Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 28 lcl|NC_015293.1_cdsid_YP_004327121.1 HHsearch (proba=100.00%)
Portal 26 lcl|NC_015293.1_cdsid_YP_004327119.1 HHsearch (proba=100.00%)
TermL 19 lcl|NC_015293.1_cdsid_YP_004327112.1 Blast (e-value=3e-94)
MTP NOT FOUND
Sheath NOT FOUND
Ad1 35 lcl|NC_015293.1_cdsid_YP_004327128.1 HHsearch (proba=99.82%)
Hc1 NOT FOUND
Ne1 37 lcl|NC_015293.1_cdsid_YP_004327130.1 HHsearch (proba=100.00%)
Tc1 NOT FOUND
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:95131
protein:vir:96792
protein:vir:102944
PA73
phiHSIC
EJ-1
33 %
27 %
17 %
Portal protein:vir:95149
protein:vir:80453
protein:vir:78393
PA73
BcepGomr
SETP3
24 %
23 %
23 %
TermL protein:vir:78394
protein:vir:94991
protein:vir:106551
SETP3
KS7
Lj965
42 %
42 %
19 %
Ad1 protein:vir:97267
protein:vir:80389
protein:vir:78383
M6
BcepGomr
SETP3
29 %
23 %
23 %
Ne1 protein:vir:94994
protein:vir:78380
protein:vir:97190
KS7
SETP3
M6
29 %
28 %
24 %