Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : H105/1 | Genbank acc : NC_015293

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 5) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 52

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	28	lcl\|NC_015293.1_cdsid_YP_004327121.1	HHsearch (proba=100.00%)
Portal	26	lcl\|NC_015293.1_cdsid_YP_004327119.1	HHsearch (proba=100.00%)
TermL	19	lcl\|NC_015293.1_cdsid_YP_004327112.1	Blast (e-value=3e-94)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	35	lcl\|NC_015293.1_cdsid_YP_004327128.1	HHsearch (proba=99.82%)
Hc1	NOT FOUND
Ne1	37	lcl\|NC_015293.1_cdsid_YP_004327130.1	HHsearch (proba=100.00%)
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:95131 protein:vir:96792 protein:vir:102944	PA73 phiHSIC EJ-1	33 % 27 % 17 %
Portal	protein:vir:95149 protein:vir:80453 protein:vir:78393	PA73 BcepGomr SETP3	24 % 23 % 23 %
TermL	protein:vir:78394 protein:vir:94991 protein:vir:106551	SETP3 KS7 Lj965	42 % 42 % 19 %
Ad1	protein:vir:97267 protein:vir:80389 protein:vir:78383	M6 BcepGomr SETP3	29 % 23 % 23 %
Ne1	protein:vir:94994 protein:vir:78380 protein:vir:97190	KS7 SETP3 M6	29 % 28 % 24 %