Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 214 lcl|NC_014467.1_cdsid_YP_003858514.1 HHsearch (proba=100.00%)
Portal 209 lcl|NC_014467.1_cdsid_YP_003858509.1 HHsearch (proba=100.00%)
TermL 206 lcl|NC_014467.1_cdsid_YP_003858506.1 Blast (e-value=0)
MTP 208 lcl|NC_014467.1_cdsid_YP_003858508.1 Blast (e-value=5e-93)
Sheath 207 lcl|NC_014467.1_cdsid_YP_003858507.1 HHsearch (proba=100.00%)
Ad1 NOT FOUND
Hc1 NOT FOUND
Ne1 NOT FOUND
Tc1 NOT FOUND
Ad2 201 lcl|NC_014467.1_cdsid_YP_003858501.1 HHsearch (proba=100.00%)
Hc2 202 lcl|NC_014467.1_cdsid_YP_003858502.1 HHsearch (proba=100.00%)
Tc2 204 lcl|NC_014467.1_cdsid_YP_003858504.1 HHsearch (proba=100.00%)
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:98143
protein:vir:100603
protein:vir:101039
RB43
25
44RR2.8t
99 %
76 %
73 %
Portal protein:vir:98265
protein:vir:101189
protein:vir:101806
RB43
44RR2.8t
31
98 %
59 %
59 %
TermL protein:vir:98262
protein:vir:108053
protein:vir:101803
RB43
JS98
31
94 %
69 %
69 %
MTP protein:vir:98264
protein:vir:101188
protein:vir:101805
RB43
44RR2.8t
31
96 %
75 %
75 %
Sheath protein:vir:98263
protein:vir:108052
protein:vir:101187
RB43
JS98
44RR2.8t
94 %
64 %
63 %
Ad2 protein:vir:98189
protein:vir:107900
protein:vir:100534
RB43
JS98
25
100 %
57 %
53 %
Hc2 protein:vir:98258
protein:vir:80995
protein:vir:6590
RB43
Phi1
RB49
99 %
54 %
53 %
Tc2 protein:vir:98260
protein:vir:107931
protein:vir:81023
RB43
JS98
Phi1
94 %
57 %
56 %