Query lcl|NC_014467.1_cdsid_YP_003858502.1 [gene=14] [protein=gp14 neck protein] [protein_id=YP_003858502.1] [location=123085..123831] Match_columns 248 No_of_seqs 32 out of 35 Neff 3.8 Searched_HMMs 1612 Date Thu Nov 7 15:23:34 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_202 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_202_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:98258 Length: 248 100.0 9E-140 6E-143 782.8 18.3 248 1-248 1-248 (248) 2 protein:vir:6890 Length: 254 # 100.0 9E-136 6E-139 760.8 19.1 248 1-248 1-252 (254) 3 protein:vir:80995 Length: 246 100.0 2E-135 2E-138 758.5 18.1 245 3-247 1-246 (246) 4 protein:vir:6590 Length: 246 # 100.0 4E-135 2E-138 757.5 18.1 245 3-247 1-246 (246) 5 protein:vir:7199 Length: 256 # 100.0 2E-134 1E-137 753.2 17.8 248 1-248 1-249 (256) 6 protein:vir:103452 Length: 256 100.0 3E-134 2E-137 752.8 18.0 248 1-248 1-249 (256) 7 protein:vir:107937 Length: 257 100.0 8E-133 5E-136 744.8 18.4 248 1-248 1-249 (257) 8 protein:vir:106285 Length: 262 100.0 4E-132 3E-135 740.8 16.1 245 1-248 1-248 (262) 9 protein:vir:101800 Length: 252 100.0 2E-131 1E-134 736.8 17.8 245 3-248 1-251 (252) 10 protein:vir:101154 Length: 252 100.0 2E-131 1E-134 736.8 17.8 245 3-248 1-251 (252) 11 protein:vir:100535 Length: 253 100.0 2E-129 1E-132 725.9 17.0 245 3-248 1-251 (253) 12 protein:vir:5658 Length: 278 # 100.0 9E-125 6E-128 700.6 16.1 248 1-248 1-260 (278) 13 protein:vir:104476 Length: 308 100.0 4E-112 3E-115 631.1 12.5 238 1-248 1-249 (308) 14 protein:vir:106986 Length: 292 100.0 7E-107 4E-110 602.7 13.6 223 25-248 1-235 (292) 15 protein:vir:103005 Length: 390 100.0 1.6E-95 1E-98 540.3 12.3 239 10-248 1-249 (390) 16 protein:vir:104739 Length: 470 100.0 2.3E-84 1.4E-87 479.1 12.5 211 25-248 1-230 (470) No 1 >protein:vir:98258 Length: 248 # NCBI annotation: gp14 head completion # Family: family:all:1104 # MgeID: mge:1667 # MgeName: RB43 # Cross-refs: genbank:acc:YP_239191;genbank:gi:66391666;genbank:GeneID:3416360 Probab=100.00 E-value=9.4e-140 Score=782.77 Aligned_cols=248 Identities=99% Similarity=1.524 Sum_probs=247.8 Q ss_pred CcccccceeeeecCccchhhhhhhccccceecccccchhHHHHHHHHHHHHHhcCcceEEeeheeccccccccccccccc Q lcl|NC_014467. 1 MQNWDESLFAQLSTGEGVDRNLKDQVTNPYVNWYKYNPTQQLHDSLTAESIQMKSPDMYYVRREFVNIDKILGEDRESKF 80 (248) Q Consensus 1 m~~~~~~~fa~le~~~gy~~~~~~~alnpyfN~~~~~~eQ~L~~~LV~E~Iqm~G~dv~YlpRe~v~~D~v~~E~~~skF 80 (248) |+|||+|||||||+++||++|++++|||||||+|+|++||+|+++||+|||||||+|||||||++|++|+||||+++||| T Consensus 1 m~~~d~~lfa~l~~~~gy~~t~~~~~lnPYfN~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~skF 80 (248) T protein:vir:98 1 MQNWDESLFAQLSTGEGVDRNLKDQVTNPYVNWYKYNPTQQLHDSLTAESIQMKSPDMYYVRREFVNIDKILGEDRESKF 80 (248) T ss_pred CcccccceeeEecCCcchhhhhhcccccceeeccccCchhHHHHHHHHHHHHHcCceEEEcchhhhcccccccccccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccceeeeeccchhhccCccchhhhhcCceeeeeEEEEEccchhhhccCCCCCccccEEEEcCCCceEEEEecccchhhhh Q lcl|NC_014467. 81 TKSWKIAAYIESYANYEGQRDFFRKFGLSSNDEMTLVLNPRLFAHQTDGGIPVLGDLVYFPMDNSLFEITWVEADPFYQF 160 (248) Q Consensus 81 ~~a~~IeaY~~n~egf~g~~d~~SKFG~~~~DE~t~~IS~~~F~~q~~~~~P~EGDLIYfPm~n~LFEI~~VE~dPFYQ~ 160 (248) ++||+||||++||+||+|+|+||||||||++|||||+|||+||+++++++||+|||||||||+|+||||+||||+||||+ T Consensus 81 ~ka~~ieaYl~~~egy~G~~d~~SKFG~~~~DEvt~~Is~~rF~~~~~~~rP~EGDLIYfPm~n~LFEI~~VE~dPFYQ~ 160 (248) T protein:vir:98 81 TKSWKIAAYIESYANYEGQRDFFSKFGLSSNDEMTLVLNPRLFAHQTDGGIPVLGDLVYFPMDNSLFEITWVEADPFYQF 160 (248) T ss_pred ccceeEEEeeehhhccCCccceeeecCceecceEEEEEccchhhhcCCCCCCccccEEEEcCCCceEEEEecCCCchhhh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCceEEEEEEEEeecCCccccccccccccccCCcccchhHHHHHHHhhhhccccccccchHHHHhhcccccccceeecCC Q lcl|NC_014467. 161 GDRPQRKINLAKFIYTGEELAPELQRNEGIHIEPDAELDLEPIRNLDGLADINIEQYEEDKEFEREGDEFIESFDVVNGR 240 (248) Q Consensus 161 GKn~vy~l~c~~F~Ys~E~i~t~~~~~D~i~~~~~~~~dl~~i~~Ldg~~d~~~~q~ee~~~~~~e~~~f~~~~~~v~~~ 240 (248) ||||||+|+|+||+||||+|+|+|+++|+|++++++++||+||+||||++||++++++|++++++||++|++||+||||| T Consensus 161 Gkn~~~~l~ce~F~Ys~E~~~~~l~~~d~i~~~~~~~iDl~~i~~ldg~~Di~~~~~~e~~~~~~E~~~~~~~~~vin~~ 240 (248) T protein:vir:98 161 GDRPQRKINLAKFIYTGEELAPELQRNEGIHIEPDAELDLEPIRNLDGLADINIEQYEEDKEFEREGDEFIESFDVVNGR 240 (248) T ss_pred CCCeEEEEEEEEeeeCCccccccCCCccccCCCCCcchhHHHhhcCccccccCcccccchhhhhhhhhhhhcccceecCc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCCCCCC Q lcl|NC_014467. 241 GSPFASLP 248 (248) Q Consensus 241 gs~~~~~p 248 (248) ||||++|| T Consensus 241 g~~~~~~~ 248 (248) T protein:vir:98 241 GSPFATLP 248 (248) T ss_pred CCCccCCC Confidence 99999999 No 2 >protein:vir:6890 Length: 254 # NCBI annotation: gp14 neck protein # Family: family:all:1104 # MgeID: mge:140 # MgeName: RB69 # Cross-refs: genbank:acc:NP_861866;genbank:gi:32453657;genbank:GeneID:1494292 Probab=100.00 E-value=9.5e-136 Score=760.83 Aligned_cols=248 Identities=51% Similarity=0.927 Sum_probs=244.1 Q ss_pred CcccccceeeeecCccchhhhhhhccccceecccccchhHHHHHHHHHHHHHhcCcceEEeeheeccccccccccccccc Q lcl|NC_014467. 1 MQNWDESLFAQLSTGEGVDRNLKDQVTNPYVNWYKYNPTQQLHDSLTAESIQMKSPDMYYVRREFVNIDKILGEDRESKF 80 (248) Q Consensus 1 m~~~~~~~fa~le~~~gy~~~~~~~alnpyfN~~~~~~eQ~L~~~LV~E~Iqm~G~dv~YlpRe~v~~D~v~~E~~~skF 80 (248) |+|||+|||||||+++||++||++++||||||+|||++||+|+++||+|||||||+|||||||++|++|+||||+++||| T Consensus 1 m~~~d~~lfa~le~~~gy~~t~~~~~lNPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~skF 80 (254) T protein:vir:68 1 MATYDKNLFAKLENRGGYSQTNETEILNPFVNFNNYENSQTLADVLVAESIQMRGIECFYVPREYVAVDLIFGEDLKNKF 80 (254) T ss_pred CcccccceeeeecCCcchhhhhhccccceeEEeeccCchhHHHHHHHHHHHHHcCceEEEechhhhcccccccccccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccceeeeeccchhhccCccchhhhhcCceeeeeEEEEEccchhhhccCCCCCccccEEEEcCCCceEEEEeccc-chhhh Q lcl|NC_014467. 81 TKSWKIAAYIESYANYEGQRDFFRKFGLSSNDEMTLVLNPRLFAHQTDGGIPVLGDLVYFPMDNSLFEITWVEA-DPFYQ 159 (248) Q Consensus 81 ~~a~~IeaY~~n~egf~g~~d~~SKFG~~~~DE~t~~IS~~~F~~q~~~~~P~EGDLIYfPm~n~LFEI~~VE~-dPFYQ 159 (248) ++||+||||++||+||+|+++||||||||++|||||+|||+||+++++++||+|||||||||+|+||||+|||+ +|||| T Consensus 81 ~ka~~ieaYl~s~egy~G~~d~~SKFG~~v~DEvt~~Is~~rF~~~v~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ 160 (254) T protein:vir:68 81 TKAWKFAAYLNSFEGYEGAKSFFSNFGMQVQDEVTLSINPGLFKHQVNNQEPKEGDLIYFPMDNSLFEINWVEPYDPFYQ 160 (254) T ss_pred ccceeEEEeeehhhccCCcccchhhcCceecceEEEEEcCchhhhhcCCCCCccccEEEEcCCCceEEEeccCCCCchhh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 69999 Q ss_pred hCCceEEEEEEEEeecCCccccccccccccccCCcccchhHHHHHHHhhhhccccccccchHHHHhhcccccccceeecC Q lcl|NC_014467. 160 FGDRPQRKINLAKFIYTGEELAPELQRNEGIHIEPDAELDLEPIRNLDGLADINIEQYEEDKEFEREGDEFIESFDVVNG 239 (248) Q Consensus 160 ~GKn~vy~l~c~~F~Ys~E~i~t~~~~~D~i~~~~~~~~dl~~i~~Ldg~~d~~~~q~ee~~~~~~e~~~f~~~~~~v~~ 239 (248) +||||||+|+|+||+||||+|+|+|++||+|+..+..++||+||++|||++||+++|++|.+++++||++||+||+|||| T Consensus 161 ~GKn~~~~l~ce~F~Ys~E~idt~i~~id~I~~~e~~~ldl~~i~~ldG~~di~~~~~~E~~~~~~e~~~f~e~~~~vn~ 240 (254) T protein:vir:68 161 VGKNAIRKITAGKFIYSGEEINPVLQKNEGINIPEFSDLELNPVRNLDGIHDINIDEYSEVEQINSEASEYVEPYVVVNN 240 (254) T ss_pred hCCceEEEEEEEEEeeCCccccCCCcccCCccCcccCCcchhhHhhhcchhhccccchhhHHHHHhhhhhhcccceeecC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CC---CCCCCCC Q lcl|NC_014467. 240 RG---SPFASLP 248 (248) Q Consensus 240 ~g---s~~~~~p 248 (248) || |||++-= T Consensus 241 ~g~~~~pf~~~~ 252 (254) T protein:vir:68 241 RGRQNSPFDDGF 252 (254) T ss_pred CCCCCCcccccc Confidence 99 6665544 No 3 >protein:vir:80995 Length: 246 # NCBI annotation: gp14 neck protein # Family: family:all:1104 # MgeID: mge:1888 # MgeName: Phi1 # Cross-refs: genbank:acc:YP_001469495;genbank:gi:157311452;genbank:GeneID:5602161 Probab=100.00 E-value=2.5e-135 Score=758.55 Aligned_cols=245 Identities=54% Similarity=0.963 Sum_probs=243.9 Q ss_pred ccccceeeeecCccchhhhhhhccccceecccccchhHHHHHHHHHHHHHhcCcceEEeeheeccccccccccccccccc Q lcl|NC_014467. 3 NWDESLFAQLSTGEGVDRNLKDQVTNPYVNWYKYNPTQQLHDSLTAESIQMKSPDMYYVRREFVNIDKILGEDRESKFTK 82 (248) Q Consensus 3 ~~~~~~fa~le~~~gy~~~~~~~alnpyfN~~~~~~eQ~L~~~LV~E~Iqm~G~dv~YlpRe~v~~D~v~~E~~~skF~~ 82 (248) -||+|||||||+|+||++|+++++||||||++||++||+|+++||+|||||||+|||||||++|++|+||||+++|||++ T Consensus 1 ~~~~~lfa~l~~~~gy~~~~~~~~lNPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~skF~k 80 (246) T protein:vir:80 1 MFDSTLFARLESQKDYENTRQTEILNPYVNFNSHTNTQTLADIMVAESIQMRGVEMYYIPREFVKPDMIFGEDVQSKFTK 80 (246) T ss_pred CCcccceeeecCCcchhhhcccccccceeeeCCCCchhhHHHHHHHHHHHHcCceEEEechhhhcccccccccccccccc Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeeeeccchhhccCccchhhhhcCceeeeeEEEEEccchhhhccCCCCCccccEEEEcCCCceEEEEeccc-chhhhhC Q lcl|NC_014467. 83 SWKIAAYIESYANYEGQRDFFRKFGLSSNDEMTLVLNPRLFAHQTDGGIPVLGDLVYFPMDNSLFEITWVEA-DPFYQFG 161 (248) Q Consensus 83 a~~IeaY~~n~egf~g~~d~~SKFG~~~~DE~t~~IS~~~F~~q~~~~~P~EGDLIYfPm~n~LFEI~~VE~-dPFYQ~G 161 (248) ||+||||++||+||+|+|+||||||||++|||||+|||+||+++++++||+|||||||||+|+||||+|||+ +||||+| T Consensus 81 a~~ieaYl~s~egy~G~gd~~SKFG~~v~DEvt~~Is~~rF~~~~~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~G 160 (246) T protein:vir:80 81 AWKFAAYINSFDGYEGAGNFFQSFGYTANDELTITINPNLFKHQVDNKEPKSGDLFYIPMSNDLFEISYVEPYQPFFQAG 160 (246) T ss_pred ceeEEEeeehhhccCCccceeeecCceecceEEEEEccchHhhhhCCCCCccccEEEEcCCCceEEEecccCCCchhhhC Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 6999999 Q ss_pred CceEEEEEEEEeecCCccccccccccccccCCcccchhHHHHHHHhhhhccccccccchHHHHhhcccccccceeecCCC Q lcl|NC_014467. 162 DRPQRKINLAKFIYTGEELAPELQRNEGIHIEPDAELDLEPIRNLDGLADINIEQYEEDKEFEREGDEFIESFDVVNGRG 241 (248) Q Consensus 162 Kn~vy~l~c~~F~Ys~E~i~t~~~~~D~i~~~~~~~~dl~~i~~Ldg~~d~~~~q~ee~~~~~~e~~~f~~~~~~v~~~g 241 (248) |||||+|+|+||+||||+|+|++++||+|++++.+++||+||+||||++|||+++|+|+++++.||++||+||+|||||| T Consensus 161 Kn~v~~l~ce~F~Ys~E~~~t~i~~~d~I~~de~~~ldl~~i~nldg~~Din~~~~~e~~~~~~e~~~f~~~~~~~~~~g 240 (246) T protein:vir:80 161 KNAMRKIIAEKFVYSGEELRPELQRNEGINVDEFADLDLAPITNLDGLTDINLDQYKEDKQFRSEGQDFIDPFDPINGKG 240 (246) T ss_pred CCeEEEEEEEEEeecCcccccCCCCccccCCCCcccccHHHHhhcccccccCcccchhhhhhhcchhhhcccceeecCCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCCCC Q lcl|NC_014467. 242 SPFASL 247 (248) Q Consensus 242 s~~~~~ 247 (248) |||+++ T Consensus 241 spf~~~ 246 (246) T protein:vir:80 241 SPFADF 246 (246) T ss_pred CccccC Confidence 999999 No 4 >protein:vir:6590 Length: 246 # NCBI annotation: neck protein # Family: family:all:1104 # MgeID: mge:139 # MgeName: RB49 # Cross-refs: genbank:acc:NP_891721;genbank:gi:33620667;genbank:GeneID:1725307 Probab=100.00 E-value=3.8e-135 Score=757.51 Aligned_cols=245 Identities=53% Similarity=0.971 Sum_probs=243.9 Q ss_pred ccccceeeeecCccchhhhhhhccccceecccccchhHHHHHHHHHHHHHhcCcceEEeeheeccccccccccccccccc Q lcl|NC_014467. 3 NWDESLFAQLSTGEGVDRNLKDQVTNPYVNWYKYNPTQQLHDSLTAESIQMKSPDMYYVRREFVNIDKILGEDRESKFTK 82 (248) Q Consensus 3 ~~~~~~fa~le~~~gy~~~~~~~alnpyfN~~~~~~eQ~L~~~LV~E~Iqm~G~dv~YlpRe~v~~D~v~~E~~~skF~~ 82 (248) -||+|||||||+|+||++|+++++||||||+|||.+||+|+++||+|||||||+|||||||++|++|+||||+++|||++ T Consensus 1 ~~~~~lfa~l~~~~gy~~~~~~~~lNPYfN~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~skF~k 80 (246) T protein:vir:65 1 MFNNTLFARLESQKDYENTRQTEILNPYVNFHKYTNTQTLADVMVAEAIQMRGVELYYIPREFVKPDMIFGEDVQSKFTK 80 (246) T ss_pred CCcccceeeecCCcchhhhcccccccceeecCCCcchhhHHHHHHHHHHHHcCceEEEechhhccccccccccccccccc Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeeeeccchhhccCccchhhhhcCceeeeeEEEEEccchhhhccCCCCCccccEEEEcCCCceEEEEeccc-chhhhhC Q lcl|NC_014467. 83 SWKIAAYIESYANYEGQRDFFRKFGLSSNDEMTLVLNPRLFAHQTDGGIPVLGDLVYFPMDNSLFEITWVEA-DPFYQFG 161 (248) Q Consensus 83 a~~IeaY~~n~egf~g~~d~~SKFG~~~~DE~t~~IS~~~F~~q~~~~~P~EGDLIYfPm~n~LFEI~~VE~-dPFYQ~G 161 (248) ||+||||++||+||+|+|+||||||||++|||||+|||+||+++++++||+|||||||||+|+||||+|||+ +||||+| T Consensus 81 a~~ieaYl~~~egy~G~~d~~SKFG~~v~DEvt~~Is~~rF~~~~~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~G 160 (246) T protein:vir:65 81 AWKFAAYINSFDGYEGAGNFFSSFGYQANDELTFTVNPNLFKHQVDDQEPKSGDLIYIPMSNDLFEINYVEPYQPFFQAG 160 (246) T ss_pred ceeEEEeeehhhccCCccceeeecCceecceEEEEEcCchhhhhcCCCCCccccEEEEcCCCcEEEEecccCCCchhhhC Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 6999999 Q ss_pred CceEEEEEEEEeecCCccccccccccccccCCcccchhHHHHHHHhhhhccccccccchHHHHhhcccccccceeecCCC Q lcl|NC_014467. 162 DRPQRKINLAKFIYTGEELAPELQRNEGIHIEPDAELDLEPIRNLDGLADINIEQYEEDKEFEREGDEFIESFDVVNGRG 241 (248) Q Consensus 162 Kn~vy~l~c~~F~Ys~E~i~t~~~~~D~i~~~~~~~~dl~~i~~Ldg~~d~~~~q~ee~~~~~~e~~~f~~~~~~v~~~g 241 (248) |||||+|+|+||+||||+|+|++++||+|++++.+++||+||+||||++|||+++|+|+++++.||++||+||+|||||| T Consensus 161 Kn~v~~l~ce~F~Ys~E~~~~~i~~~d~I~~de~~~ldl~~i~~ldg~~Din~~~~~e~~~~~~e~~~f~~~~~~~~~~g 240 (246) T protein:vir:65 161 KNAMRKIIAEKFVYSGEELRPELQRNEGINVDEFADLDLAPITNLDGLTDINLDQYKEDKQFRSEGQDFIDPFDPINGKG 240 (246) T ss_pred CCeEEEEEEEEEeecCcccccCCCCccccCCCCcccccHHHHhhcccccccCccchhhhhhhhcchhhhcccceeecCCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCCCC Q lcl|NC_014467. 242 SPFASL 247 (248) Q Consensus 242 s~~~~~ 247 (248) |||+++ T Consensus 241 spf~~~ 246 (246) T protein:vir:65 241 SPFADF 246 (246) T ss_pred CccccC Confidence 999999 No 5 >protein:vir:7199 Length: 256 # NCBI annotation: gp14 neck protein # Family: family:all:1104 # MgeID: mge:142 # MgeName: T4 # Cross-refs: genbank:acc:NP_049773;genbank:gi:9632588;genbank:GeneID:1258695 Probab=100.00 E-value=2.3e-134 Score=753.19 Aligned_cols=248 Identities=52% Similarity=0.937 Sum_probs=247.1 Q ss_pred CcccccceeeeecCccchhhhhhhccccceecccccchhHHHHHHHHHHHHHhcCcceEEeeheeccccccccccccccc Q lcl|NC_014467. 1 MQNWDESLFAQLSTGEGVDRNLKDQVTNPYVNWYKYNPTQQLHDSLTAESIQMKSPDMYYVRREFVNIDKILGEDRESKF 80 (248) Q Consensus 1 m~~~~~~~fa~le~~~gy~~~~~~~alnpyfN~~~~~~eQ~L~~~LV~E~Iqm~G~dv~YlpRe~v~~D~v~~E~~~skF 80 (248) |+|||+|||||||+++||++||++++||||||++||++||+|+++||+|||||||+|||||||++|++|+||||+++||| T Consensus 1 m~~~d~~lfa~l~~~~gy~~~~~~~~lNPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlpRe~v~~D~i~~Ed~~skF 80 (256) T protein:vir:71 1 MATYDKNLFAKLENRTGYSQTNETEILNPYVNFNHYKNSQILADVLVAESIQMRGVECYYVPREYVSPDLIFGEDLKNKF 80 (256) T ss_pred CcccccceeeeecCCcchhhhhhhcccceeeeeeccCchhhHHHHHHHHHHHHcCceEEEechhhccccccccccccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccceeeeeccchhhccCccchhhhhcCceeeeeEEEEEccchhhhccCCCCCccccEEEEcCCCceEEEEeccc-chhhh Q lcl|NC_014467. 81 TKSWKIAAYIESYANYEGQRDFFRKFGLSSNDEMTLVLNPRLFAHQTDGGIPVLGDLVYFPMDNSLFEITWVEA-DPFYQ 159 (248) Q Consensus 81 ~~a~~IeaY~~n~egf~g~~d~~SKFG~~~~DE~t~~IS~~~F~~q~~~~~P~EGDLIYfPm~n~LFEI~~VE~-dPFYQ 159 (248) ++||+||||++||+||+|+++||||||||++|||||+|||+||+++++++||+|||||||||+|+||||+|||| +|||| T Consensus 81 ~ka~~ieaYl~~~egy~G~~d~~SKFG~~~~DEvt~~Is~~rF~~~v~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ 160 (256) T protein:vir:71 81 TKAWKFAAYLNSFEGYEGAKSFFSNFGMQVQDEVTLSINPNLFKHQVNGKEPKEGDLIYFPMDNSLFEINWVEPYDPFYQ 160 (256) T ss_pred ccceeEEEEeehhhccCCccccceecCceecceEEEEEccchhhhhhcCCCCccccEEEEcCCCcEEEEEcccCCCchhh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 69999 Q ss_pred hCCceEEEEEEEEeecCCccccccccccccccCCcccchhHHHHHHHhhhhccccccccchHHHHhhcccccccceeecC Q lcl|NC_014467. 160 FGDRPQRKINLAKFIYTGEELAPELQRNEGIHIEPDAELDLEPIRNLDGLADINIEQYEEDKEFEREGDEFIESFDVVNG 239 (248) Q Consensus 160 ~GKn~vy~l~c~~F~Ys~E~i~t~~~~~D~i~~~~~~~~dl~~i~~Ldg~~d~~~~q~ee~~~~~~e~~~f~~~~~~v~~ 239 (248) +||||||+|+|+||+||||+|+|+++++|+|..++.+.+||+||++|+|++||++++++|++++++||++|++|++|||| T Consensus 161 ~Gkn~~~~l~ce~F~Ys~E~~~~~l~~~d~i~~~e~~eldl~~i~~ldg~~di~~~~~~e~~~i~~e~~~~ve~~~~in~ 240 (256) T protein:vir:71 161 LGQNAIRKITAGKFIYSGEEINPVLQKNEGINIPEFSELELNAVRNLNGIHDINIDQYAEVDQINSEAKEYVEPYVVVNN 240 (256) T ss_pred hCCCeEEEEEEEEEecCCceecccCCCCCcccCCcccccccccccccCcccccccccccchhhhhhccccccccceeecC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCCCCCCC Q lcl|NC_014467. 240 RGSPFASLP 248 (248) Q Consensus 240 ~gs~~~~~p 248 (248) ||+|++.+| T Consensus 241 ~G~~~~~~p 249 (256) T protein:vir:71 241 RGKSFESSP 249 (256) T ss_pred CCCCCcCCC Confidence 999999999 No 6 >protein:vir:103452 Length: 256 # NCBI annotation: head completion # Family: family:all:1104 # MgeID: mge:1542 # MgeName: RB32 # Cross-refs: genbank:acc:YP_803104;genbank:gi:116326384;genbank:GeneID:4405481 Probab=100.00 E-value=2.8e-134 Score=752.77 Aligned_cols=248 Identities=52% Similarity=0.946 Sum_probs=247.0 Q ss_pred CcccccceeeeecCccchhhhhhhccccceecccccchhHHHHHHHHHHHHHhcCcceEEeeheeccccccccccccccc Q lcl|NC_014467. 1 MQNWDESLFAQLSTGEGVDRNLKDQVTNPYVNWYKYNPTQQLHDSLTAESIQMKSPDMYYVRREFVNIDKILGEDRESKF 80 (248) Q Consensus 1 m~~~~~~~fa~le~~~gy~~~~~~~alnpyfN~~~~~~eQ~L~~~LV~E~Iqm~G~dv~YlpRe~v~~D~v~~E~~~skF 80 (248) |+|||+|||||||+++||++||++++||||||++||++||+|+++||+|||||||+|||||||++|++|+||||+++||| T Consensus 1 m~~~d~~lfa~l~~~~gy~~~~~~~~lNPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~skF 80 (256) T protein:vir:10 1 MATYDKNLFAKLENHTGYSQTNETEILNPYVNFNHYKNSQILADVLVAESIQMRGVECYYVPREYVSPDLIFGEDLKNKF 80 (256) T ss_pred CcccccceeeeecCCcchhhhhhhcccceeeeeeccCchhhHHHHHHHHHHHHcCceEEEechhhccccccccccccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccceeeeeccchhhccCccchhhhhcCceeeeeEEEEEccchhhhccCCCCCccccEEEEcCCCceEEEEeccc-chhhh Q lcl|NC_014467. 81 TKSWKIAAYIESYANYEGQRDFFRKFGLSSNDEMTLVLNPRLFAHQTDGGIPVLGDLVYFPMDNSLFEITWVEA-DPFYQ 159 (248) Q Consensus 81 ~~a~~IeaY~~n~egf~g~~d~~SKFG~~~~DE~t~~IS~~~F~~q~~~~~P~EGDLIYfPm~n~LFEI~~VE~-dPFYQ 159 (248) ++||+||||++||+||+|+++||||||||++|||||+|||+||+++++++||+|||||||||+|+||||+|||+ +|||| T Consensus 81 ~ka~~ieaYl~~~egy~G~~d~~SKFG~~~~DEvt~~Is~~rF~~~v~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ 160 (256) T protein:vir:10 81 TKAWKFAAYLNSFEGYEGAKSFFSNFGMQVQDEVTLSINPNLFKHQVNGKEPKEGDLIYFPMDNSLFEINWVEPYDPFYQ 160 (256) T ss_pred ccceeEEEEeehhhccCCccccceecCceecceEEEEEcCchhhhhccCCCCccccEEEEcCCCcEEEEEeccCCCchhh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 69999 Q ss_pred hCCceEEEEEEEEeecCCccccccccccccccCCcccchhHHHHHHHhhhhccccccccchHHHHhhcccccccceeecC Q lcl|NC_014467. 160 FGDRPQRKINLAKFIYTGEELAPELQRNEGIHIEPDAELDLEPIRNLDGLADINIEQYEEDKEFEREGDEFIESFDVVNG 239 (248) Q Consensus 160 ~GKn~vy~l~c~~F~Ys~E~i~t~~~~~D~i~~~~~~~~dl~~i~~Ldg~~d~~~~q~ee~~~~~~e~~~f~~~~~~v~~ 239 (248) +||||||+|+|+||+||||+|+|+++++|+|++++.+.+||+||++|+|++|+++.+++|.+++++|++.|++|++|||| T Consensus 161 ~Gkn~~~~l~ce~F~Ys~E~~~~~l~~~d~i~~~~~~eldl~pi~~ldG~~di~~~~~~e~~~~~~e~~~~v~~~~~in~ 240 (256) T protein:vir:10 161 LGQNAIRKITAGKFIYSGEEINPVLQKNEGINIPEFSELELNPVRNLNGIHDINIDQYAEVDQINSEAKEYVEPYVVVNN 240 (256) T ss_pred hCCCeEEEEEEEEEeeCCceecccCCCCccccCCccchhhhccccccccccccCccccccchhhhhccccccccceEecC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCCCCCCC Q lcl|NC_014467. 240 RGSPFASLP 248 (248) Q Consensus 240 ~gs~~~~~p 248 (248) ||+|++.+| T Consensus 241 ~G~~~~~~p 249 (256) T protein:vir:10 241 RGKSFESSP 249 (256) T ss_pred CCCCCcCCC Confidence 999999999 No 7 >protein:vir:107937 Length: 257 # NCBI annotation: gp14 neck protein # Family: family:all:1104 # MgeID: mge:2002 # MgeName: JS98 # Cross-refs: genbank:acc:YP_001595290;genbank:gi:161622596;genbank:GeneID:5783656 Probab=100.00 E-value=7.9e-133 Score=744.81 Aligned_cols=248 Identities=52% Similarity=0.941 Sum_probs=244.6 Q ss_pred CcccccceeeeecCccchhhhhhhccccceecccccchhHHHHHHHHHHHHHhcCcceEEeeheeccccccccccccccc Q lcl|NC_014467. 1 MQNWDESLFAQLSTGEGVDRNLKDQVTNPYVNWYKYNPTQQLHDSLTAESIQMKSPDMYYVRREFVNIDKILGEDRESKF 80 (248) Q Consensus 1 m~~~~~~~fa~le~~~gy~~~~~~~alnpyfN~~~~~~eQ~L~~~LV~E~Iqm~G~dv~YlpRe~v~~D~v~~E~~~skF 80 (248) |+|||+|||||||+|+||++||++++||||||++||.+||+|+++||+|||||||+|||||||++|++|+||||+++||| T Consensus 1 m~~~d~~lfa~le~~~gy~~t~~~~~lnPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~skF 80 (257) T protein:vir:10 1 MATFDSSLFAKLENNTGYANTNETEIMNPFVNFYRHENTQTLADALVAESIQMRGIELYYIPREYVNPDQLFGEDLQNKF 80 (257) T ss_pred CcccccceeeeecCCcchhhhhhhccccceeecccCCchhHHHHHHHHHHHHHcCceEEEcchhhhcccccccccccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccceeeeeccchhhccCccchhhhhcCceeeeeEEEEEccchhhhccCCCCCccccEEEEcCCCceEEEEeccc-chhhh Q lcl|NC_014467. 81 TKSWKIAAYIESYANYEGQRDFFRKFGLSSNDEMTLVLNPRLFAHQTDGGIPVLGDLVYFPMDNSLFEITWVEA-DPFYQ 159 (248) Q Consensus 81 ~~a~~IeaY~~n~egf~g~~d~~SKFG~~~~DE~t~~IS~~~F~~q~~~~~P~EGDLIYfPm~n~LFEI~~VE~-dPFYQ 159 (248) ++||+||||++||+||+|+++||||||||++|||||+|||+||+++++++||+|||||||||+|+||||+|||+ +|||| T Consensus 81 ~ka~~ieaYl~s~egy~G~~d~~SKFG~~v~DEvt~~Is~~rF~~~v~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ 160 (257) T protein:vir:10 81 TKAWKFAGYLDSFEGYSGDNTYFSKFGMMVNDEVTITINPNLFKHQCNGTEPVSGDLIYFPMDNSLFEINWVQPYDPFYQ 160 (257) T ss_pred ccceeEEEeeehhhccCCCcceeeecCceecceEEEEEccchhhhhccCCCCccccEEEEcCCCceEEEecccCCCchhh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 69999 Q ss_pred hCCceEEEEEEEEeecCCccccccccccccccCCcccchhHHHHHHHhhhhccccccccchHHHHhhcccccccceeecC Q lcl|NC_014467. 160 FGDRPQRKINLAKFIYTGEELAPELQRNEGIHIEPDAELDLEPIRNLDGLADINIEQYEEDKEFEREGDEFIESFDVVNG 239 (248) Q Consensus 160 ~GKn~vy~l~c~~F~Ys~E~i~t~~~~~D~i~~~~~~~~dl~~i~~Ldg~~d~~~~q~ee~~~~~~e~~~f~~~~~~v~~ 239 (248) +||||||+|+|+||+||||+|.|++++++++..++..++||+||++|||++||++++++|++++++||++||+||+|||| T Consensus 161 ~Gkn~~~~l~ce~F~Ys~E~l~pel~~n~~~~V~e~~eldl~~~~~ldG~~di~~~~~~E~~~~~~e~~~fi~p~~~~n~ 240 (257) T protein:vir:10 161 VGTNVQRRITATKFIYNGEELRPELQRNEGINIPEFSELDLMPVKNIDGLADISDIQYEEVNEINAEAAEFVHPYVVING 240 (257) T ss_pred hCCceEEEEEEEEeeeCCcccccccCCcccCCCCCccchhhhhhhhccchhhcCCchhhhHHHHHHhhhhhhccccccCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCCCCCCC Q lcl|NC_014467. 240 RGSPFASLP 248 (248) Q Consensus 240 ~gs~~~~~p 248 (248) ||++..-.| T Consensus 241 ~g~~~~~~p 249 (257) T protein:vir:10 241 RGEDAPPTA 249 (257) T ss_pred CCCCCCCCc Confidence 997765555 No 8 >protein:vir:106285 Length: 262 # NCBI annotation: gp14 neck protein # Family: family:all:1104 # MgeID: mge:1474 # MgeName: Aeh1 # Cross-refs: genbank:acc:NP_944101;genbank:gi:38640145;genbank:GeneID:2658033 Probab=100.00 E-value=4.2e-132 Score=740.84 Aligned_cols=245 Identities=48% Similarity=0.869 Sum_probs=239.9 Q ss_pred CcccccceeeeecCccchhhhhhhccccceecccccchhHHHHHHHHHHHHHhcCcceEEeeheeccccccccccccccc Q lcl|NC_014467. 1 MQNWDESLFAQLSTGEGVDRNLKDQVTNPYVNWYKYNPTQQLHDSLTAESIQMKSPDMYYVRREFVNIDKILGEDRESKF 80 (248) Q Consensus 1 m~~~~~~~fa~le~~~gy~~~~~~~alnpyfN~~~~~~eQ~L~~~LV~E~Iqm~G~dv~YlpRe~v~~D~v~~E~~~skF 80 (248) |+|||+|||||||+|+||++|+++++||||||+++|++||+|+++||+|||||||+|||||||++|++|+||||+++||| T Consensus 1 m~~~d~~lfa~le~~~gy~~~~~~~vlNPYfN~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlpRe~v~~D~i~gEd~~SkF 80 (262) T protein:vir:10 1 MFARNQSMFAQLETGAGYNKTYQTNVLNPYVNKHEYEPTLSLHEMLVAESIQMTGVEMYYIRREFVNFDRIFGEDMQSKF 80 (262) T ss_pred CcccccceeeEecCCCcccCcchhccccceeccCCcCchhhHHHHHHHHHHHHcCceEEEcchhhhcccccccccccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccceeeeeccchhhccCccchhhhhcCceeeeeEEEEEccchhhhccCCCCCccccEEEEcCCCceEEEEeccc-chhhh Q lcl|NC_014467. 81 TKSWKIAAYIESYANYEGQRDFFRKFGLSSNDEMTLVLNPRLFAHQTDGGIPVLGDLVYFPMDNSLFEITWVEA-DPFYQ 159 (248) Q Consensus 81 ~~a~~IeaY~~n~egf~g~~d~~SKFG~~~~DE~t~~IS~~~F~~q~~~~~P~EGDLIYfPm~n~LFEI~~VE~-dPFYQ 159 (248) ++||+||||++||+||+|+|+||||||||++|||||+|||+||+++++++||+|||||||||+|+||||+|||+ +|||| T Consensus 81 ~ka~~ieaYl~s~egy~G~~d~~SKFG~~v~DEvt~~Is~~rF~~~~~~~rP~EGDLIYfPl~nsLFEI~~VE~~~PFYQ 160 (262) T protein:vir:10 81 KKTYKVAMYLESFDEYSGQRDFFSKFGMQVNDEITMSVSPKLFETQADGDRVKEGDLIYFPLNNSLFEVTWVEPSSPVVK 160 (262) T ss_pred ccceeEEEeeehhhccCCccceeeecCceecceEEEEEccchhhhhhcCCCCccccEEEEcCCCceEEEeeccCCCchhh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 69999 Q ss_pred hCCceEEEEEEEEeecCCccccccccccccccCCcccchhHHHHHHHhhhhccccccccchHHHHhhcccccccceeecC Q lcl|NC_014467. 160 FGDRPQRKINLAKFIYTGEELAPELQRNEGIHIEPDAELDLEPIRNLDGLADINIEQYEEDKEFEREGDEFIESFDVVNG 239 (248) Q Consensus 160 ~GKn~vy~l~c~~F~Ys~E~i~t~~~~~D~i~~~~~~~~dl~~i~~Ldg~~d~~~~q~ee~~~~~~e~~~f~~~~~~v~~ 239 (248) +||||||+|+|+||+||||+|+|+|++||+|+...+ +|+||++|||++|||++|++|.+++++|+++|+++|++||| T Consensus 161 ~Gkn~~~~l~ce~F~Ys~E~i~~~i~~id~i~~e~~---~l~~i~~lDg~~di~~~q~~e~~~~~~e~~~fv~~~d~v~~ 237 (262) T protein:vir:10 161 REQLAKYKVTAQKFIYSGEEIKPEFDPNRYVLGEDD---PLSQIKALDGRADISLDEFAEDDAFNEEAEDFVVEFDNIIG 237 (262) T ss_pred hCCceEEEEEEEEEeeCCccccccCccccccccccc---cccccccccceeecccccccchhHHhhhhhhhcchhcccCC Confidence 999999999999999999999999999999987644 69999999999999999999999999999999999999999 Q ss_pred CCCCCCC--CC Q lcl|NC_014467. 240 RGSPFAS--LP 248 (248) Q Consensus 240 ~gs~~~~--~p 248 (248) |||||++ || T Consensus 238 ~gsp~~~~~~~ 248 (262) T protein:vir:10 238 NGTPIAEHKPT 248 (262) T ss_pred CCCcccccCCC Confidence 9999964 33 No 9 >protein:vir:101800 Length: 252 # NCBI annotation: gp14 neck protein # Family: family:all:1104 # MgeID: mge:1580 # MgeName: 31 # Cross-refs: genbank:acc:YP_238877;genbank:gi:66391952;genbank:GeneID:3416627 Probab=100.00 E-value=2.3e-131 Score=736.75 Aligned_cols=245 Identities=46% Similarity=0.830 Sum_probs=240.8 Q ss_pred ccccceeeeecCccchhhhhhhccccceecccccchhHHHHHHHHHHHHHhcCcceEEeeheeccccccccccccccccc Q lcl|NC_014467. 3 NWDESLFAQLSTGEGVDRNLKDQVTNPYVNWYKYNPTQQLHDSLTAESIQMKSPDMYYVRREFVNIDKILGEDRESKFTK 82 (248) Q Consensus 3 ~~~~~~fa~le~~~gy~~~~~~~alnpyfN~~~~~~eQ~L~~~LV~E~Iqm~G~dv~YlpRe~v~~D~v~~E~~~skF~~ 82 (248) -+|+|||||||+++||++||++++||||||++||++||+|+++||+|||||||+|||||||++|++|+||||+++|||++ T Consensus 1 m~d~~lfa~le~~~gy~~t~~~~~lNPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlpRe~v~~D~i~~Ed~~SkF~k 80 (252) T protein:vir:10 1 MMDKSLFATLENRGGYMRTNEKNILNPYVKFNKHEGTQALQDTLVAESIQMRGIEFYYLEREFTDLDLLFGEDVNSRFEK 80 (252) T ss_pred CCCccceeEecCCcchhhhhhhccccceeeecCccchhHHHHHHHHHHHHHcCceEEEechhhccccccccccccccccc Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeeeeccchhhccCccchhhhhcCceeeeeEEEEEccchhhhccCCCCCccccEEEEcCCCceEEEEeccc-chhhhhC Q lcl|NC_014467. 83 SWKIAAYIESYANYEGQRDFFRKFGLSSNDEMTLVLNPRLFAHQTDGGIPVLGDLVYFPMDNSLFEITWVEA-DPFYQFG 161 (248) Q Consensus 83 a~~IeaY~~n~egf~g~~d~~SKFG~~~~DE~t~~IS~~~F~~q~~~~~P~EGDLIYfPm~n~LFEI~~VE~-dPFYQ~G 161 (248) ||+||||++||+||+|+|+||||||||++|||||+|||+||+++++++||+|||||||||+|+||||+|||+ +||||+| T Consensus 81 a~~ieaYl~s~egy~G~gd~~SKFG~~~~DEvt~~Is~~rF~~qv~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~G 160 (252) T protein:vir:10 81 AWKFAAWLNSFESYEGQQSFFSKFGHTQNDEIRISINPGLFKYQVNGKEPALGDLIYMPMDNSLFEITWVEPYSPFYQNG 160 (252) T ss_pred ceeEEEeeehhhccCCccceeeecCceecceEEEEEcCchhhhhccCCCCccccEEEEcCCCcEEEEeccCCCCchhhhC Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 6999999 Q ss_pred CceEEEEEEEEeecCCccccccccccccccCCcccchhHHHHHHHhhhhccccccccchHHHHhhcccccccceeecCCC Q lcl|NC_014467. 162 DRPQRKINLAKFIYTGEELAPELQRNEGIHIEPDAELDLEPIRNLDGLADINIEQYEEDKEFEREGDEFIESFDVVNGRG 241 (248) Q Consensus 162 Kn~vy~l~c~~F~Ys~E~i~t~~~~~D~i~~~~~~~~dl~~i~~Ldg~~d~~~~q~ee~~~~~~e~~~f~~~~~~v~~~g 241 (248) |||||+|+|+||+||||+|+|+++++|+|+ +..+.+||+||++|||++||+++|++|++++++||++||+||+|||||| T Consensus 161 kn~~~~l~ce~F~Ys~E~idt~~~~id~Ie-~~~s~ldl~~i~~ldG~~Di~~~~~~e~~~~~~e~~~~~e~~~~i~~~~ 239 (252) T protein:vir:10 161 KNPIRVIVAQKFIYSGEKITPVVQEKPEIE-DMYNGLDLAPLLNLDGMIDQKIDQFAENIAVQQKVKQYAEPFDPISTNS 239 (252) T ss_pred CCeEEEEEEEEEeeCCceecCcccccCccc-hhhhccchHHHhhcCCeeccccccchhhHHHHHhhhhhhccceeecCCC Confidence 999999999999999999999999999999 7788999999999999999999999999999999999999999999999 Q ss_pred -----CCCCCCC Q lcl|NC_014467. 242 -----SPFASLP 248 (248) Q Consensus 242 -----s~~~~~p 248 (248) |||+.-- T Consensus 240 ~~~~~~pf~~~~ 251 (252) T protein:vir:10 240 FGNFDSPFGKHE 251 (252) T ss_pred CCCcCCcccccC Confidence 7777666 No 10 >protein:vir:101154 Length: 252 # NCBI annotation: neck protein # Family: family:all:1104 # MgeID: mge:1582 # MgeName: 44RR2.8t # Cross-refs: genbank:acc:NP_932505;genbank:gi:37651631;genbank:GeneID:2610647 Probab=100.00 E-value=2.3e-131 Score=736.75 Aligned_cols=245 Identities=46% Similarity=0.830 Sum_probs=240.8 Q ss_pred ccccceeeeecCccchhhhhhhccccceecccccchhHHHHHHHHHHHHHhcCcceEEeeheeccccccccccccccccc Q lcl|NC_014467. 3 NWDESLFAQLSTGEGVDRNLKDQVTNPYVNWYKYNPTQQLHDSLTAESIQMKSPDMYYVRREFVNIDKILGEDRESKFTK 82 (248) Q Consensus 3 ~~~~~~fa~le~~~gy~~~~~~~alnpyfN~~~~~~eQ~L~~~LV~E~Iqm~G~dv~YlpRe~v~~D~v~~E~~~skF~~ 82 (248) -+|+|||||||+++||++||++++||||||++||++||+|+++||+|||||||+|||||||++|++|+||||+++|||++ T Consensus 1 m~d~~lfa~le~~~gy~~t~~~~~lNPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlpRe~v~~D~i~~Ed~~SkF~k 80 (252) T protein:vir:10 1 MMDKSLFATLENRGGYMRTNEKNILNPYVKFNKHEGTQALQDTLVAESIQMRGIEFYYLEREFTDLDLLFGEDVNSRFEK 80 (252) T ss_pred CCCccceeEecCCcchhhhhhhccccceeeecCccchhHHHHHHHHHHHHHcCceEEEechhhccccccccccccccccc Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeeeeccchhhccCccchhhhhcCceeeeeEEEEEccchhhhccCCCCCccccEEEEcCCCceEEEEeccc-chhhhhC Q lcl|NC_014467. 83 SWKIAAYIESYANYEGQRDFFRKFGLSSNDEMTLVLNPRLFAHQTDGGIPVLGDLVYFPMDNSLFEITWVEA-DPFYQFG 161 (248) Q Consensus 83 a~~IeaY~~n~egf~g~~d~~SKFG~~~~DE~t~~IS~~~F~~q~~~~~P~EGDLIYfPm~n~LFEI~~VE~-dPFYQ~G 161 (248) ||+||||++||+||+|+|+||||||||++|||||+|||+||+++++++||+|||||||||+|+||||+|||+ +||||+| T Consensus 81 a~~ieaYl~s~egy~G~gd~~SKFG~~~~DEvt~~Is~~rF~~qv~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~G 160 (252) T protein:vir:10 81 AWKFAAWLNSFESYEGQQSFFSKFGHTQNDEIRISINPGLFKYQVNGKEPALGDLIYMPMDNSLFEITWVEPYSPFYQNG 160 (252) T ss_pred ceeEEEeeehhhccCCccceeeecCceecceEEEEEcCchhhhhccCCCCccccEEEEcCCCcEEEEeccCCCCchhhhC Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 6999999 Q ss_pred CceEEEEEEEEeecCCccccccccccccccCCcccchhHHHHHHHhhhhccccccccchHHHHhhcccccccceeecCCC Q lcl|NC_014467. 162 DRPQRKINLAKFIYTGEELAPELQRNEGIHIEPDAELDLEPIRNLDGLADINIEQYEEDKEFEREGDEFIESFDVVNGRG 241 (248) Q Consensus 162 Kn~vy~l~c~~F~Ys~E~i~t~~~~~D~i~~~~~~~~dl~~i~~Ldg~~d~~~~q~ee~~~~~~e~~~f~~~~~~v~~~g 241 (248) |||||+|+|+||+||||+|+|+++++|+|+ +..+.+||+||++|||++||+++|++|++++++||++||+||+|||||| T Consensus 161 kn~~~~l~ce~F~Ys~E~idt~~~~id~Ie-~~~s~ldl~~i~~ldG~~Di~~~~~~e~~~~~~e~~~~~e~~~~i~~~~ 239 (252) T protein:vir:10 161 KNPIRVIVAQKFIYSGEKITPVVQEKPEIE-DMYNGLDLAPLLNLDGMIDQKIDQFAENIAVQQKVKQYAEPFDPISTNS 239 (252) T ss_pred CCeEEEEEEEEEeeCCceecCcccccCccc-hhhhccchHHHhhcCCeeccccccchhhHHHHHhhhhhhccceeecCCC Confidence 999999999999999999999999999999 7788999999999999999999999999999999999999999999999 Q ss_pred -----CCCCCCC Q lcl|NC_014467. 242 -----SPFASLP 248 (248) Q Consensus 242 -----s~~~~~p 248 (248) |||+.-- T Consensus 240 ~~~~~~pf~~~~ 251 (252) T protein:vir:10 240 FGNFDSPFGKHE 251 (252) T ss_pred CCCcCCcccccC Confidence 7777666 No 11 >protein:vir:100535 Length: 253 # NCBI annotation: gp14 head completion protein # Family: family:all:1104 # MgeID: mge:1488 # MgeName: 25 # Cross-refs: genbank:acc:YP_656376;genbank:gi:109290127;genbank:GeneID:4156513 Probab=100.00 E-value=2.3e-129 Score=725.87 Aligned_cols=245 Identities=48% Similarity=0.877 Sum_probs=238.9 Q ss_pred ccccceeeeecCccchhhhhhhccccceecccccchhHHHHHHHHHHHHHhcCcceEEeeheeccccccccccccccccc Q lcl|NC_014467. 3 NWDESLFAQLSTGEGVDRNLKDQVTNPYVNWYKYNPTQQLHDSLTAESIQMKSPDMYYVRREFVNIDKILGEDRESKFTK 82 (248) Q Consensus 3 ~~~~~~fa~le~~~gy~~~~~~~alnpyfN~~~~~~eQ~L~~~LV~E~Iqm~G~dv~YlpRe~v~~D~v~~E~~~skF~~ 82 (248) -+|+|||||||+++||++|+++++||||||++||++||+|+++||+|||||||+|||||||++|++|+||||+++|||++ T Consensus 1 ~~~~~lfa~l~~~~gy~~t~~~~~lNPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~skF~k 80 (253) T protein:vir:10 1 MMDKSLFATLENRSGYQQTNEQNILNPYVKFNRYEGSQALHDTLVAESIQMRGLEFYYLEREYTNLDLLFGEDPNSRFEK 80 (253) T ss_pred CcCccceeEecCCcchhhhhhhccccceeeccccCchhHHHHHHHHHHHHHcCceEEEcchhhccccCcccccccccccc Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeeeeccchhhccCccchhhhhcCceeeeeEEEEEccchhhhccCCCCCccccEEEEcCCCceEEEEeccc-chhhhhC Q lcl|NC_014467. 83 SWKIAAYIESYANYEGQRDFFRKFGLSSNDEMTLVLNPRLFAHQTDGGIPVLGDLVYFPMDNSLFEITWVEA-DPFYQFG 161 (248) Q Consensus 83 a~~IeaY~~n~egf~g~~d~~SKFG~~~~DE~t~~IS~~~F~~q~~~~~P~EGDLIYfPm~n~LFEI~~VE~-dPFYQ~G 161 (248) ||+||||++||+||+|+++||||||||++|||||+|||+||+++++++||+|||||||||+|+||||+|||+ +||||+| T Consensus 81 a~~ieaYl~~~egy~G~gd~~SKFG~~v~DEvt~~Is~~rF~~~v~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~G 160 (253) T protein:vir:10 81 AWKFAAWLNSFESYEGQQSFFSKFGHQQNDEVRISINPGLFKYQVNGKEPKLGDLIYMPMDNSLFEITWVEPYTPFYQMG 160 (253) T ss_pred ceeEEEeeehhhccCCccceeeecCceecceEEEEEcCchhhhhccCCCCccccEEEEcCCCcEEEEeccCCCCchhhhC Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 6999999 Q ss_pred CceEEEEEEEEeecCCccccccccccccccCCcccchhHHHHHHHhhhhccccccccchHHHHhhcccccccceee---- Q lcl|NC_014467. 162 DRPQRKINLAKFIYTGEELAPELQRNEGIHIEPDAELDLEPIRNLDGLADINIEQYEEDKEFEREGDEFIESFDVV---- 237 (248) Q Consensus 162 Kn~vy~l~c~~F~Ys~E~i~t~~~~~D~i~~~~~~~~dl~~i~~Ldg~~d~~~~q~ee~~~~~~e~~~f~~~~~~v---- 237 (248) |||||+|+|+||+||||+|+|++++||+|+ +..++|||+||++|+|++||++.|++|.+++++||++||++|+|| T Consensus 161 kn~~~~l~ce~F~Ys~E~i~tgi~~id~Ie-~~~~~ldl~~i~~l~G~~Di~~~~~~e~~~~~~e~~~~v~~~~~~~~~~ 239 (253) T protein:vir:10 161 KNPIRVIVAQKFIYSGEKLAPQFQEKPEIE-DQYNGLDLEPILNLDGFIDQKINEFGENVQAQNEARPFVEPFDPISTNP 239 (253) T ss_pred CceEEEEEEEEEecCCccccccCccccccc-chhhhhhhhhhhcCCCccccccccccccchhhhccccccccceeccCCC Confidence 999999999999999999999999999999 566899999999999999999999999999999999999999997 Q ss_pred -cCCCCCCCCCC Q lcl|NC_014467. 238 -NGRGSPFASLP 248 (248) Q Consensus 238 -~~~gs~~~~~p 248 (248) +|++|||+.-- T Consensus 240 ~~g~~spf~~~~ 251 (253) T protein:vir:10 240 VNSFNSPFGRHE 251 (253) T ss_pred CccccCcccccC Confidence 55568888776 No 12 >protein:vir:5658 Length: 278 # NCBI annotation: gp14 # Family: family:all:1104 # MgeID: mge:119 # MgeName: KVP40 # Cross-refs: genbank:acc:NP_899597;genbank:gi:34419584;genbank:GeneID:2545699 Probab=100.00 E-value=9.1e-125 Score=700.62 Aligned_cols=248 Identities=42% Similarity=0.761 Sum_probs=237.4 Q ss_pred Cccccc---ceeeeecCccchhhhhhhccccceecccccchhHHHHHHHHHHHHHhcCcceEEeeheecccccccccccc Q lcl|NC_014467. 1 MQNWDE---SLFAQLSTGEGVDRNLKDQVTNPYVNWYKYNPTQQLHDSLTAESIQMKSPDMYYVRREFVNIDKILGEDRE 77 (248) Q Consensus 1 m~~~~~---~~fa~le~~~gy~~~~~~~alnpyfN~~~~~~eQ~L~~~LV~E~Iqm~G~dv~YlpRe~v~~D~v~~E~~~ 77 (248) |++||+ |||||||+++||++|+++++||||||++||++||+|+++||+|||||||+|||||||++|++|+||+|+++ T Consensus 1 m~~~d~~~~~lfa~l~~~~gy~~~~~~~~~NpYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~ 80 (278) T protein:vir:56 1 MGAYDTNTGGMFAKLESQKGYDQIYNNHLVNPYFNWVNHTNEQNLTDMLVAESIINRGVECVYLRREMEKVDLVFGEDPM 80 (278) T ss_pred CccccccCceEEEEecCCcccchhcccccccceeeccCCCchhHHHHHHHHHHHHHcCceEEEcchhhhccccccccccc Confidence 999999 79999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cccccceeeeeccchhhccCccchhhhhcCceeeeeEEEEEccchhhhccCCCCCccccEEEEcCCCceEEEEeccc-ch Q lcl|NC_014467. 78 SKFTKSWKIAAYIESYANYEGQRDFFRKFGLSSNDEMTLVLNPRLFAHQTDGGIPVLGDLVYFPMDNSLFEITWVEA-DP 156 (248) Q Consensus 78 skF~~a~~IeaY~~n~egf~g~~d~~SKFG~~~~DE~t~~IS~~~F~~q~~~~~P~EGDLIYfPm~n~LFEI~~VE~-dP 156 (248) |||++||+||||++||+||+|+++||||||||++|||||+|||+||+++++++||+|||||||||+|+||||+|||+ +| T Consensus 81 skF~ka~~ieaYl~~~egy~G~~d~~SKFG~~~~DEvt~~Is~~rF~~~~~~~rP~EGDLIYfPm~n~LFEI~~VE~~~P 160 (278) T protein:vir:56 81 SKFTQNFRMSLYVESFEGWDGDGDWYSKFGFQVNDEMNVCINPKLFAQQGDGKQPLMGDLIYFPLANSLFEISWIEREDP 160 (278) T ss_pred cccccceeEEEEeehhhccCCCceeeeecCceecceEEEEEccchhhhcCCCCCCccccEEEEcCCCcEEEEEccCCCCc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 69 Q ss_pred hhhhCCceEEEEEEEEeecCCcccccc-----ccccccccC---CcccchhHHHHHHHhhhhccccccccchHHHHhhcc Q lcl|NC_014467. 157 FYQFGDRPQRKINLAKFIYTGEELAPE-----LQRNEGIHI---EPDAELDLEPIRNLDGLADINIEQYEEDKEFEREGD 228 (248) Q Consensus 157 FYQ~GKn~vy~l~c~~F~Ys~E~i~t~-----~~~~D~i~~---~~~~~~dl~~i~~Ldg~~d~~~~q~ee~~~~~~e~~ 228 (248) |||+||||||+|+|+||+||||+|+++ +++++.|.. .....+|+.||.+|+|++|+++++++|.+++++|++ T Consensus 161 FYQ~Gk~~~~~l~ce~F~Ys~E~~dtg~pe~~~d~i~~i~ef~e~~~~~ld~~~~~~l~G~~di~~~~~~e~~~~~~e~~ 240 (278) T protein:vir:56 161 WYMNGVLPMRKMKMTKFVYSGEEINLEKPEAVIDSIDDILNFGEDTDEMIDIDKINALDGRWDIGIEQGAEITQIEDEVD 240 (278) T ss_pred hhhhCCceEEEEEEEEeeecCceecccCCccccccccchhhcccchhhcccccccccccchhcccchhhhhhhhhhhccc Confidence 999999999999999999999999887 555666533 233459999999999999999999999999999999 Q ss_pred cccccceeecCCCCCCCCCC Q lcl|NC_014467. 229 EFIESFDVVNGRGSPFASLP 248 (248) Q Consensus 229 ~f~~~~~~v~~~gs~~~~~p 248 (248) .|++|++||+++|++...+| T Consensus 241 ~f~~~~~v~~~~~~~~~t~~ 260 (278) T protein:vir:56 241 KFYESEQVVPSGSDVQPTDP 260 (278) T ss_pred eeeecCceecCCCCccccCc Confidence 99999999999998777777 No 13 >protein:vir:104476 Length: 308 # NCBI annotation: gp14 # Family: family:all:1104 # MgeID: mge:1548 # MgeName: P-SSM4 # Cross-refs: genbank:acc:YP_214650;genbank:gi:61806291;genbank:GeneID:3294531 Probab=100.00 E-value=4.4e-112 Score=631.07 Aligned_cols=238 Identities=26% Similarity=0.445 Sum_probs=215.1 Q ss_pred CcccccceeeeecCccchhhhhhhccccceecccccchhHHHHHHHHHHHHHhcCcceEEeeheeccccccccccccccc Q lcl|NC_014467. 1 MQNWDESLFAQLSTGEGVDRNLKDQVTNPYVNWYKYNPTQQLHDSLTAESIQMKSPDMYYVRREFVNIDKILGEDRESKF 80 (248) Q Consensus 1 m~~~~~~~fa~le~~~gy~~~~~~~alnpyfN~~~~~~eQ~L~~~LV~E~Iqm~G~dv~YlpRe~v~~D~v~~E~~~skF 80 (248) |. |..+.- +-|= -+..++|||||+|||++||+|+|+||+|||||||+|||||||++|++|+||+|+++||| T Consensus 1 ~~-~~~~~~------~py~--~~~~~~~~~~n~~~~~~eQ~L~e~LV~EsIqm~G~dvyYlpRe~v~~D~i~~Ed~~skF 71 (308) T protein:vir:10 1 MA-IQNSPA------QDYV--QSDYSNAGRLKANASSQEQKFIENLVVESIEIYGQDIYYVPRTIVNRDSVFEEDSDGKF 71 (308) T ss_pred Cc-cccCCC------CCcc--cccccccceEEEeccCchhHHHHHHHHHHHHhcCceEEEechhhccccccccccccccc Confidence 21 211110 0010 01234455579999999999999999999999999999999999999999999999999 Q ss_pred ccceeeeeccchhhccCccchhhhhcCceeeeeEEEEEccchhhhccCC-------CCCccccEEEEcCCCceEEEEecc Q lcl|NC_014467. 81 TKSWKIAAYIESYANYEGQRDFFRKFGLSSNDEMTLVLNPRLFAHQTDG-------GIPVLGDLVYFPMDNSLFEITWVE 153 (248) Q Consensus 81 ~~a~~IeaY~~n~egf~g~~d~~SKFG~~~~DE~t~~IS~~~F~~q~~~-------~~P~EGDLIYfPm~n~LFEI~~VE 153 (248) ++||+|||||+||+||+|+++||||||||++|||||+|||+||++++++ +||+|||||||||+|+|||||||| T Consensus 72 ~~a~~ieaY~~~~egy~g~~~~~SKFG~~~~DE~t~~is~~rF~~~v~~~~~~~~~~rP~EGDLIYfPl~~~lFEI~~VE 151 (308) T protein:vir:10 72 ESAKAIRAYVNNVEGWEGQGELLSKFGIRIEDKTTFIFSREKFKEHVDDSVTLNVEGRPNEGDLIWFPITKHLFEIKFVE 151 (308) T ss_pred ccceeEEEEeechhccCCCcceeeecCceecceEEEEEccchhhhhcCCccccccCCCCccccEEEecCCCceEEEEccc Confidence 9999999999999999999999999999999999999999999999988 599999999999999999999999 Q ss_pred c-chhhhhCCceEEEEEEEEeecCCccccccccccccccCCcccchhHHHHHHHhhhhccccccccchHHHHhhcccc-- Q lcl|NC_014467. 154 A-DPFYQFGDRPQRKINLAKFIYTGEELAPELQRNEGIHIEPDAELDLEPIRNLDGLADINIEQYEEDKEFEREGDEF-- 230 (248) Q Consensus 154 ~-dPFYQ~GKn~vy~l~c~~F~Ys~E~i~t~~~~~D~i~~~~~~~~dl~~i~~Ldg~~d~~~~q~ee~~~~~~e~~~f-- 230 (248) | +||||+||||||+|+|+||+||||+|+|+|++||+|++++++.|||+||++++|.+|+++.++++..++++|++.| T Consensus 152 ~~~PFyQ~Gk~~~~~l~ce~F~Ys~E~~~~~i~~iD~i~~~~~~~LdL~pIs~l~G~fdInE~v~gest~itAEv~~wds 231 (308) T protein:vir:10 152 VERPFYQLGRNYVWECQCELFEYSDEEINTGITELDAIETAFANAITVGLVAGGTGTFTVGETITGGTSNVTAEVKSFDA 231 (308) T ss_pred CCCchhhhCCceEEEEEEEEEeeCCcccccCCccccccccccccceeeeeeccCCccccccceecccccceEEEEEEecC Confidence 9 6999999999999999999999999999999999999999999999999999999999999999999999999998 Q ss_pred -cccceeecCCCCCCCCCC Q lcl|NC_014467. 231 -IESFDVVNGRGSPFASLP 248 (248) Q Consensus 231 -~~~~~~v~~~gs~~~~~p 248 (248) +.+..|+|++| .|++|| T Consensus 232 ~v~~ItV~N~gG-sftspp 249 (308) T protein:vir:10 232 STRTLIVINRSG-TFTVPE 249 (308) T ss_pred CceEEEEEeCCC-ceeeCc Confidence 66666667666 677899 No 14 >protein:vir:106986 Length: 292 # NCBI annotation: neck protein gp14 # Family: family:all:1104 # MgeID: mge:1459 # MgeName: S-PM2 # Cross-refs: genbank:acc:YP_195128;genbank:gi:58532905;uniprot:Q5GQV9;genbank:GeneID:3260483 Probab=100.00 E-value=6.6e-107 Score=602.71 Aligned_cols=223 Identities=23% Similarity=0.423 Sum_probs=215.0 Q ss_pred ccccceec--ccccchhHHHHHHHHHHHHHhcCcceEEeeheecccccccccccccccccceeeeeccchhhccCccchh Q lcl|NC_014467. 25 QVTNPYVN--WYKYNPTQQLHDSLTAESIQMKSPDMYYVRREFVNIDKILGEDRESKFTKSWKIAAYIESYANYEGQRDF 102 (248) Q Consensus 25 ~alnpyfN--~~~~~~eQ~L~~~LV~E~Iqm~G~dv~YlpRe~v~~D~v~~E~~~skF~~a~~IeaY~~n~egf~g~~d~ 102 (248) -||||||| +|||.+||+|+|+||+|||||||+|||||||++|+ |++|+|+++|||++||+|||||+||+||+|+++| T Consensus 1 m~~npyfn~~~~~~~~eQ~L~~~LV~Esiq~~G~dvyYlpRe~~~-d~~~~E~~~skF~~a~~ieaY~~~~eg~~g~~~~ 79 (292) T protein:vir:10 1 MPTSPYFPSYYSGYSGEQNLVQDLVDEQIKLFGTDIYYLPRTILR-DNTLDDVIYNKFERQFQVEMLLQNVEGFGSPSEF 79 (292) T ss_pred CCcCccccccccCcCchhHHHHHHHHHHHHhcCceEEEechhhhc-ccccccccccccccceeEEEEeechhccCCCcce Confidence 89999999 57999999999999999999999999999999999 9999999999999999999999999999999999 Q ss_pred hhhcCceeeeeEEEEEccchhhhccCC------CCCccccEEEEcCCCceEEEEeccc-chhhhhCCceEEEEEEEEeec Q lcl|NC_014467. 103 FRKFGLSSNDEMTLVLNPRLFAHQTDG------GIPVLGDLVYFPMDNSLFEITWVEA-DPFYQFGDRPQRKINLAKFIY 175 (248) Q Consensus 103 ~SKFG~~~~DE~t~~IS~~~F~~q~~~------~~P~EGDLIYfPm~n~LFEI~~VE~-dPFYQ~GKn~vy~l~c~~F~Y 175 (248) |||||||++|||||+|||+||++++++ +||+|||||||||+|+||||+|||| +||||+||||||+|+|+||+| T Consensus 80 ~sKFG~~~~De~t~~is~~~f~~~~~~~~~~~~~~P~eGDLIYfPl~~~lFEI~~ve~~~PfyQ~gk~~~~~l~~~~F~Y 159 (292) T protein:vir:10 80 ISKFGLRITDEVRFIVSQRRWDEEAVNYDLNVNGRPNEGDLLYFPLTQDIYEIKFVEREDPFYQLGKNYFYIMTAEIYEY 159 (292) T ss_pred eeecCceecceEEEEEccchhhhhcCcccccccCCCccccEEEEcCCCcEEEEEcccCCCchhhhCCceEEEEEEEEEee Confidence 999999999999999999999999987 8999999999999999999999999 699999999999999999999 Q ss_pred CCccccccccccccccCCcccchhHHHHHHHhhhhccccccccchHHHHhhcccccc---cceeecCCCCCCCCCC Q lcl|NC_014467. 176 TGEELAPELQRNEGIHIEPDAELDLEPIRNLDGLADINIEQYEEDKEFEREGDEFIE---SFDVVNGRGSPFASLP 248 (248) Q Consensus 176 s~E~i~t~~~~~D~i~~~~~~~~dl~~i~~Ldg~~d~~~~q~ee~~~~~~e~~~f~~---~~~~v~~~gs~~~~~p 248 (248) |+|+|+|+|+++|+|++....+++|+|++++.|.++++..+.++...+++||+.|.. +..|+|++||.-+.-+ T Consensus 160 s~E~idtgl~eiD~i~~~~sseLdL~pi~~g~G~f~inE~vtge~sg~~AEv~sw~~~t~~L~V~n~~GsF~T~e~ 235 (292) T protein:vir:10 160 GSDNISTGVEEIDELETLFSSAIAIALSIGGTGDFDLGEIVTGGISGTEAEVKSWDSSSRILQVINRTGTFEEGES 235 (292) T ss_pred cCceecCCCCcccccccccccccceeecccCCccccCCceeeecccceEEEEEEccCCCceEEEEeCccccccCce Confidence 999999999999999999999999999999999999999999999999999999966 5558999987665555 No 15 >protein:vir:103005 Length: 390 # NCBI annotation: gp110 # Family: family:all:1104 # MgeID: mge:1583 # MgeName: Syn9 # Cross-refs: genbank:acc:YP_717777;genbank:gi:113200614;genbank:GeneID:4239009 Probab=100.00 E-value=1.6e-95 Score=540.25 Aligned_cols=239 Identities=26% Similarity=0.380 Sum_probs=204.4 Q ss_pred eeecCccchhhhhhhccccceecccccchhHHHHHHHHHHHHHhcCcceEEeeheecccccccccccccccccceeeeec Q lcl|NC_014467. 10 AQLSTGEGVDRNLKDQVTNPYVNWYKYNPTQQLHDSLTAESIQMKSPDMYYVRREFVNIDKILGEDRESKFTKSWKIAAY 89 (248) Q Consensus 10 a~le~~~gy~~~~~~~alnpyfN~~~~~~eQ~L~~~LV~E~Iqm~G~dv~YlpRe~v~~D~v~~E~~~skF~~a~~IeaY 89 (248) -...+..||+++++++++|||||+|||.+||+|+|+||+|||||||+||||||||+|++|+||+|+++|||++||+|||| T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~~~lv~e~i~~~g~~~~y~~r~~~~~d~~~~e~~~~~f~~~~~~~~y 80 (390) T protein:vir:10 1 MTYSNDPPNNCIQSDYTSSCRLNLNGSAQEQTFMENLIVESIELYGQNVYYLPRIYVNRDTILNEVETSRFEQALSVRAY 80 (390) T ss_pred CeecCCCcccceecceeeccEEEEeccCchhHHHHHHHHHHhHhcCceEEEechheeccccccccccccccccceEEEEE Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cchhhccCccchhhhhcCceeeeeEEEEEccchhhhccCC-------CCCccccEEEEcCCCceEEEEeccc-chhhhhC Q lcl|NC_014467. 90 IESYANYEGQRDFFRKFGLSSNDEMTLVLNPRLFAHQTDG-------GIPVLGDLVYFPMDNSLFEITWVEA-DPFYQFG 161 (248) Q Consensus 90 ~~n~egf~g~~d~~SKFG~~~~DE~t~~IS~~~F~~q~~~-------~~P~EGDLIYfPm~n~LFEI~~VE~-dPFYQ~G 161 (248) |+|||||+|++|||||||||++|||||+|||+||++++++ +||+|||||||||+++||||+|||| +||||+| T Consensus 81 ~~~~~~~~~~~~~~skfg~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~p~egdliy~p~~~~lfei~~ve~~~p~yq~G 160 (390) T protein:vir:10 81 VNNVEGWEGQGDLLSKFGVRIEDKTTFIFSRKKFTTAVDDNAVLNVEGRPNEGDLIWFPATRHLFEIKFVEAERPFYQLG 160 (390) T ss_pred eechhccCCccceeeecCceecceEEEEECCcchhhhhCCcccccccCCCCCCceEEecCCCCEEEEEecCCCCCceEcc Confidence 9999999999999999999999999999999999999987 6999999999999999999999999 6999999 Q ss_pred CceEEEEEEEEeecCCccccccccccccccCCcccchhHHHHHHHhhhhccccccccchHHHH--hhcccccccceeecC Q lcl|NC_014467. 162 DRPQRKINLAKFIYTGEELAPELQRNEGIHIEPDAELDLEPIRNLDGLADINIEQYEEDKEFE--REGDEFIESFDVVNG 239 (248) Q Consensus 162 Kn~vy~l~c~~F~Ys~E~i~t~~~~~D~i~~~~~~~~dl~~i~~Ldg~~d~~~~q~ee~~~~~--~e~~~f~~~~~~v~~ 239 (248) |+|+|+|+|++|+||+|.+++++++++.+.......+.+..+..--+............-... .-+..--..-..|.+ T Consensus 161 ~nyt~~i~a~lf~ySge~iat~~seid~I~~~~~~~v~~~~~t~g~~~~t~~~~v~~~g~ga~~~a~v~~g~Vt~vtItn 240 (390) T protein:vir:10 161 KGYVWECQCELFEYSDEDLDTGVAEIDAIETAFANAIKLVMDAGGTGAFTVGEEIVGDLYLATATATISGDAVDAVTVTD 240 (390) T ss_pred CceeeeeEEeeeccCCccccccccccccccccccceeeeeeccCCcccccccceeeecCcceeEEEEecCCeEEEEEEee Confidence 999999999999999999999999999999887777776655544443332111111110000 001111123456778 Q ss_pred CCCCCCCCC Q lcl|NC_014467. 240 RGSPFASLP 248 (248) Q Consensus 240 ~gs~~~~~p 248 (248) .|+++...| T Consensus 241 ~GsGYt~~~ 249 (390) T protein:vir:10 241 GGEHYKSAL 249 (390) T ss_pred CCCCcccCc Confidence 899988764 No 16 >protein:vir:104739 Length: 470 # NCBI annotation: T4-like neck protein # Family: family:all:1104 # MgeID: mge:1630 # MgeName: P-SSM2 # Cross-refs: genbank:acc:YP_214353;genbank:gi:61805993;genbank:GeneID:3294259 Probab=100.00 E-value=2.3e-84 Score=479.08 Aligned_cols=211 Identities=30% Similarity=0.492 Sum_probs=180.9 Q ss_pred ccccceecccccchhHHHHHHHHHHHHHhcCcceEEeeheecccccccccccccccccceeeeeccchhhccCccchhhh Q lcl|NC_014467. 25 QVTNPYVNWYKYNPTQQLHDSLTAESIQMKSPDMYYVRREFVNIDKILGEDRESKFTKSWKIAAYIESYANYEGQRDFFR 104 (248) Q Consensus 25 ~alnpyfN~~~~~~eQ~L~~~LV~E~Iqm~G~dv~YlpRe~v~~D~v~~E~~~skF~~a~~IeaY~~n~egf~g~~d~~S 104 (248) -+|||||| |+|.+||+|+|+||+|||||||+||||||||+|++|+||+|+++|||++||+|||||+|||||+|+++||| T Consensus 1 ~~~~~~~~-~~~~~~~~~~~~~~~e~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (470) T protein:vir:10 1 MALNPFFL-QGTSSEQRLTQDLINEHLKIYGVEVTYIPRKYVNTKSIIEEVQSSKFDDNFAIEAYVNTYEGYGGQGDVLT 79 (470) T ss_pred CcccceeE-cCCCchhHHHHHHHHHHhHhccceEEEechhhcccccccccccccccccceeEEEEeecccCcCCcceeee Confidence 89999997 99999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hcCceeeeeEEEEEccchhh------------------hccCCCCCccccEEEEcCCCceEEEEeccc-chhhhhCCceE Q lcl|NC_014467. 105 KFGLSSNDEMTLVLNPRLFA------------------HQTDGGIPVLGDLVYFPMDNSLFEITWVEA-DPFYQFGDRPQ 165 (248) Q Consensus 105 KFG~~~~DE~t~~IS~~~F~------------------~q~~~~~P~EGDLIYfPm~n~LFEI~~VE~-dPFYQ~GKn~v 165 (248) |||++++|||+|+|||+||+ +|+..+||+|||||||||+|+||||+|||+ +||||+||+|+ T Consensus 80 ~fg~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~p~egdl~~~p~~~~~~~i~~ve~~~p~~~~G~~~~ 159 (470) T protein:vir:10 80 KFGMSIRDEVTLTISKERFEDFIAPFMAGLDDGPGGNEEVILATRPREGDLVFFPLGSRLFEVKFVEHEDPFYQLGKNYV 159 (470) T ss_pred ecCcccceEEEEEECCccccccccchhhcccCcccccccccccCCcccccEEEecCCCCEEEEEecCCCCcchhcCccee Confidence 99999999999999999995 566679999999999999999999999998 69999999999 Q ss_pred EEEEEEEeecCCccccccccccccccCCcccchhHHHHHHHhhhhccccccccchHHHHhhcccccccceeecCCCCCCC Q lcl|NC_014467. 166 RKINLAKFIYTGEELAPELQRNEGIHIEPDAELDLEPIRNLDGLADINIEQYEEDKEFEREGDEFIESFDVVNGRGSPFA 245 (248) Q Consensus 166 y~l~c~~F~Ys~E~i~t~~~~~D~i~~~~~~~~dl~~i~~Ldg~~d~~~~q~ee~~~~~~e~~~f~~~~~~v~~~gs~~~ 245 (248) |+|+|++|+|++|.+++.+..++.......+..... +.+.-- . ... -.....-.-.-..+.+.|+.+. T Consensus 160 ~~it~~~f~ysge~~s~~v~~~~~~~~~~g~~~t~t----~~~~g~-~---~~~----t~~~~~g~vt~ititn~Gsgyt 227 (470) T protein:vir:10 160 YQLKCELFEYEDEVIDTSIDAIDTVVQDDGYISKLQ----LVGIGR-T---AEV----AASIGVGYVREIFLNNDGSGFT 227 (470) T ss_pred EEeeeceeEecCCccccceecccccccccccceeee----ecCCCc-c---cee----eeeecceeeeEeEeecccccee Confidence 999999999999999999999998887655533322 111000 0 000 0011112223356677788888 Q ss_pred CCC Q lcl|NC_014467. 246 SLP 248 (248) Q Consensus 246 ~~p 248 (248) .+| T Consensus 228 ~~p 230 (470) T protein:vir:10 228 SPP 230 (470) T ss_pred ccC Confidence 888 Done!