Query lcl|NC_014467.1_cdsid_YP_003858501.1 [gene=13] [protein=gp13 neck protein] [protein_id=YP_003858501.1] [location=122153..123076] Match_columns 307 No_of_seqs 33 out of 40 Neff 4.3 Searched_HMMs 1612 Date Thu Nov 7 15:23:32 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_201 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_201_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:98189 Length: 307 100.0 8E-169 5E-172 942.0 24.6 307 1-307 1-307 (307) 2 protein:vir:6889 Length: 308 # 100.0 3E-154 2E-157 862.2 24.1 300 1-307 1-306 (308) 3 protein:vir:101857 Length: 307 100.0 3E-153 2E-156 857.0 24.0 303 1-307 1-307 (307) 4 protein:vir:101153 Length: 307 100.0 3E-153 2E-156 857.0 24.0 303 1-307 1-307 (307) 5 protein:vir:107900 Length: 311 100.0 4E-152 3E-155 850.4 23.2 303 1-307 1-310 (311) 6 protein:vir:100534 Length: 314 100.0 1E-149 9E-153 836.6 25.4 303 1-307 1-314 (314) 7 protein:vir:5657 Length: 307 # 100.0 2E-149 9E-153 836.5 23.5 301 1-307 4-306 (307) 8 protein:vir:81013 Length: 310 100.0 4E-148 2E-151 828.9 26.1 302 1-307 4-310 (310) 9 protein:vir:6589 Length: 310 # 100.0 4E-148 2E-151 828.9 26.1 302 1-307 4-310 (310) 10 protein:vir:7198 Length: 309 # 100.0 2E-148 9E-152 831.0 23.1 300 1-307 1-307 (309) 11 protein:vir:103451 Length: 309 100.0 5E-148 3E-151 828.4 24.0 301 1-307 1-308 (309) 12 protein:vir:106428 Length: 306 100.0 3E-147 2E-150 823.7 26.4 301 1-307 1-306 (306) 13 protein:vir:106985 Length: 276 100.0 7E-128 4E-131 717.9 20.8 272 1-307 1-275 (276) 14 protein:vir:104694 Length: 281 100.0 5E-127 3E-130 713.2 18.9 273 1-307 1-280 (281) 15 protein:vir:104585 Length: 268 100.0 9E-117 6E-120 656.7 17.8 259 1-307 4-267 (268) 16 protein:vir:103004 Length: 268 100.0 3E-116 2E-119 653.7 14.8 259 1-307 1-267 (268) 17 protein:vir:104694 Length: 281 95.2 0.00045 2.8E-07 39.0 8.7 216 1-271 24-281 (281) 18 protein:vir:103004 Length: 268 92.4 0.00042 2.6E-07 39.1 3.2 213 1-276 26-268 (268) No 1 >protein:vir:98189 Length: 307 # NCBI annotation: gp13 head completion # Family: family:all:1103 # MgeID: mge:1667 # MgeName: RB43 # Cross-refs: genbank:acc:YP_239190;genbank:gi:66391665;genbank:GeneID:3416291 Probab=100.00 E-value=8.4e-169 Score=942.04 Aligned_cols=307 Identities=100% Similarity=1.498 Sum_probs=306.1 Q ss_pred CCcCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhccchhceeEEEEeeeeccccceecCCCceeEEEE Q lcl|NC_014467. 1 MITNNPEQLKDEILRRLGAPIIKIEITQDQIYDCIQRALDLYAEYHYNGTNKSYIILTLGEDNPRNVFDLSKEHIFAVTK 80 (307) Q Consensus 1 ~~~~sr~~Lkd~ilrrLGAPvi~VeVtd~Qi~dcId~Alqly~EyHydG~~k~yl~~~~ted~~~~~~~~~~~~v~aVt~ 80 (307) ||||||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|++||||++|+|+++|++|||||+ T Consensus 1 m~t~s~~eLKdyiLRrLGAPvi~InVtd~Qi~DcId~ALqly~EyHydG~~k~y~~~~i~~d~~~~~~~~~~~~v~aVT~ 80 (307) T protein:vir:98 1 MITNNPEQLKDEILRRLGAPIIKIEITQDQIYDCIQRALDLYAEYHYNGTNKSYIILTLGEDNPRNVFDLSKEHIFAVTK 80 (307) T ss_pred CCcCCHHHHHHHHHHhcCCceeEEecCHHHHHHHHHHHHHHHHhhhcccccceeEEEEecccccccceecCCchHhHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred EEeeccccccccCcccccccccchhhcccccccCCcccccccccccccchhHHHHHHHHHHHHHHHhcCccccccccCcc Q lcl|NC_014467. 81 VLRTNIGSLVSMDGTAVYPWFTDFLMGLTGGSLGGRCASSVYGMNAYGADLGYFTQMMSYQRSMQELLAPLPDYWYNDDT 160 (307) Q Consensus 81 i~r~~~g~~~~~~g~a~y~~~~dfv~g~~~~~~gg~~~~~~~g~na~g~~l~~f~~~~~Yq~~l~d~f~p~~~y~yn~~t 160 (307) |+|+++|+++||||+|||||||||++|++|+++||+|||++||||+||++||||+|+||||+||+|+|+|+||||||+++ T Consensus 81 iirt~~g~~~s~dg~aty~w~~d~~~g~~~~~~g~~~~s~~~g~n~~g~~l~yf~q~~~Y~~~l~dl~~p~~dy~yn~~~ 160 (307) T protein:vir:98 81 VLRTNIGSLVSMDGTAVYPWFTDFLMGLTGGSLGGRCASSVYGMNAYGADLGYFTQMMSYQRSMQELLAPLPDYWYNDDT 160 (307) T ss_pred HhhcCccceecccccccccccCcceeecCCcccccccccceecCccccchHHHHHHHHHHHHHHHHhhccccceeecCcc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceEEEEeeeccCceEEEeeecchhccchhhhhceecccccCCcccccCCchhhccChhhhhhcceeeccCCCCccccccC Q lcl|NC_014467. 161 GQFCVWGKVNNGDIIVIEVMVRSFVDVPSAVGSVAGYATAGSNAVEDQSIADIYDNPYNAVVGGVRAGQGTTVTGGTSAY 240 (307) Q Consensus 161 ~~L~i~gn~~~gd~l~~e~~vk~f~~~~~~v~~~~~y~~~~~~~~~d~~~~~~~~n~y~~~~~~~r~~~~~~~~~~~~~Y 240 (307) +||+++|||++||+||+|+|||||+++++++++++||+++++++|+||+++|+|+|||+++++||||++|++++++|++| T Consensus 161 ~~l~~~gn~~~~d~i~~e~~~ks~ld~~~~i~~~~~y~~~~~~~~~d~~~~d~~~n~y~~~~~~yra~~~~~~~~~t~aY 240 (307) T protein:vir:98 161 GQFCVWGKVNNGDIIVIEVMVRSFVDVPSAVGSVAGYATAGSNAVEDQSIADIYDNPYNAVVGGVRAGQGTTVTGGTSAY 240 (307) T ss_pred cceeeeeccccCceEEEEEeecccccchHHhcccccceeecccccccccchhhccchhhhhhcceeecCCCCcccccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHHhhcCCCCcccC Q lcl|NC_014467. 241 NNRWVKDYSTALVKEINGQILAKFQGMQLPGGVAPDGTRLIQEAETKLQGLRDELISMSDAVPIIMV 307 (307) Q Consensus 241 Nn~WvKdyATALvK~~wGqnL~KfqG~qLPGGvtlnG~~i~~eA~~Eie~LreeL~~~~~~ppl~mi 307 (307) ||||||||||||+||+|||||+|||||||||||||||+|||+||++|||+|||||+++|+|||++|| T Consensus 241 NnrWvKdYaTALvK~~wGq~L~K~qG~qLPGGVTlnG~~i~eeA~~E~e~LreEl~~~~~~ppi~mi 307 (307) T protein:vir:98 241 NNRWVKDYSTALVKEINGQILAKFQGMQLPGGVAPDGTRLIQEAETKLQGLRDELISMSDAVPIIMV 307 (307) T ss_pred chhHHHHHHHHHHHHHHHHHHHHhcCccCCCceeecHHHHHHHHHHHHHHHHHHHhhcCCCCccccC Confidence 9999999999999999999999999999999999999999999999999999999999999999999 No 2 >protein:vir:6889 Length: 308 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:140 # MgeName: RB69 # Cross-refs: genbank:acc:NP_861865;genbank:gi:32453656;genbank:GeneID:1494291 Probab=100.00 E-value=3e-154 Score=862.22 Aligned_cols=300 Identities=50% Similarity=0.927 Sum_probs=287.5 Q ss_pred CC---cCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhccchhceeEEEEeeeecc--ccceecCCCce Q lcl|NC_014467. 1 MI---TNNPEQLKDEILRRLGAPIIKIEITQDQIYDCIQRALDLYAEYHYNGTNKSYIILTLGEDNP--RNVFDLSKEHI 75 (307) Q Consensus 1 ~~---~~sr~~Lkd~ilrrLGAPvi~VeVtd~Qi~dcId~Alqly~EyHydG~~k~yl~~~~ted~~--~~~~~~~~~~v 75 (307) |= ++||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|++|+|++ .|+|++++.+| T Consensus 1 m~~~~~~s~~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~Alely~EyHydG~~k~y~~~~i~~d~~~k~g~f~~~d~~v 80 (308) T protein:vir:68 1 MSGYNAQNPKELKDVILRRLGAPIVNVELTTDQIYDCISRALELYGEYHFDGLNKGFHVFFVDDEEKYRHGVFDMRGSNV 80 (308) T ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhhccccccceEEEEeChhhhhccceeecCCccc Confidence 43 49999999999999999999999999999999999999999999999999999999998775 49999999999 Q ss_pred eEEEEEEeeccccccccCcccccccccchhhcccccccC-CcccccccccccccchhHHHHHHHHHHHHHHHhcCccccc Q lcl|NC_014467. 76 FAVTKVLRTNIGSLVSMDGTAVYPWFTDFLMGLTGGSLG-GRCASSVYGMNAYGADLGYFTQMMSYQRSMQELLAPLPDY 154 (307) Q Consensus 76 ~aVt~i~r~~~g~~~~~~g~a~y~~~~dfv~g~~~~~~g-g~~~~~~~g~na~g~~l~~f~~~~~Yq~~l~d~f~p~~~y 154 (307) ||||+|+||++|++++|||+|||+||||||+|++|++++ +++|++.||||+||+++|||+|+||||+||+|||+|+|+| T Consensus 81 ~avT~i~rt~~gs~~t~dg~a~Y~~~~dfv~g~~g~~g~~~~~~~~~~g~n~~g~~lgy~~~~~~Y~~~l~dl~~p~~~~ 160 (308) T protein:vir:68 81 FAVTRIIRTNVGSITSMDGNATYPWFTDFLLGMAGVSGGMGSNCGKFYGPNAFGADLGYYSQLVSYMGMLQDMIAPLPDF 160 (308) T ss_pred hhhhhhhhccccccccccccccccccCceeeeecccCcccccccchhcccccccchhhhHHHHHHHHHHHHHhccccccc Confidence 999999999999999999999999999999999999987 6788999999999999999999999999999999999999 Q ss_pred cccCccceEEEEeeeccCceEEEeeecchhccchhhhhceecccccCCcccccCCchhhccChhhhhhcceeeccCCCCc Q lcl|NC_014467. 155 WYNDDTGQFCVWGKVNNGDIIVIEVMVRSFVDVPSAVGSVAGYATAGSNAVEDQSIADIYDNPYNAVVGGVRAGQGTTVT 234 (307) Q Consensus 155 ~yn~~t~~L~i~gn~~~gd~l~~e~~vk~f~~~~~~v~~~~~y~~~~~~~~~d~~~~~~~~n~y~~~~~~~r~~~~~~~~ 234 (307) |||++++||++++|+++||+|++|+|||||++++++|+|.+||+++++|+| |++++.|++|+..+++|||+.+|++. T Consensus 161 ~~n~~~~ql~i~~n~~~~d~~i~e~~~ks~le~~~~v~n~~~y~~~~~rl~--~~~~~~~~~~~~~l~~~~~~~~p~~~- 237 (308) T protein:vir:68 161 WFNSANEQLKVMGNFRQKDVIIVESYVRSYIETHKMVGNTVGYGQVGPRDS--WSISERYDNPDHNLVGRRVGEDPATK- 237 (308) T ss_pred ccCCcceeEEEeeeeccCceEEEEEeeecccccchhhccceeeeeeccccc--CccccccccchhhheeeeeccCCCcc- Confidence 999999999999999999999999999999999999999999999999988 55667899999999999999999986 Q ss_pred cccccCCchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHHhhcCCCCcccC Q lcl|NC_014467. 235 GGTSAYNNRWVKDYSTALVKEINGQILAKFQGMQLPGGVAPDGTRLIQEAETKLQGLRDELISMSDAVPIIMV 307 (307) Q Consensus 235 ~~~~~YNn~WvKdyATALvK~~wGqnL~KfqG~qLPGGvtlnG~~i~~eA~~Eie~LreeL~~~~~~ppl~mi 307 (307) |++|||||||||||||+|++|||||+|||||||||||||||+|||+||++|||+|||||+++| ||++|| T Consensus 238 --~~~YNnrWvKdYaTAL~K~~wGqnL~K~qG~qLPGGvTlnG~~i~eeA~~E~e~LreEl~~~~--pP~~~i 306 (308) T protein:vir:68 238 --QGAYNNRWVKDYASALAKELNGQILAKHQGMMLPGGVTVDGVRLIEEARLEKEALREELYLLD--PPAGIL 306 (308) T ss_pred --ccccchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHhhcc--CCCcee Confidence 779999999999999999999999999999999999999999999999999999999999999 455555 No 3 >protein:vir:101857 Length: 307 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:1580 # MgeName: 31 # Cross-refs: genbank:acc:YP_238876;genbank:gi:66391951;genbank:GeneID:3416684 Probab=100.00 E-value=2.7e-153 Score=857.04 Aligned_cols=303 Identities=51% Similarity=0.919 Sum_probs=290.1 Q ss_pred CCc--CCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhccchhceeEEEEeeeecc-ccceecCCCceeE Q lcl|NC_014467. 1 MIT--NNPEQLKDEILRRLGAPIIKIEITQDQIYDCIQRALDLYAEYHYNGTNKSYIILTLGEDNP-RNVFDLSKEHIFA 77 (307) Q Consensus 1 ~~~--~sr~~Lkd~ilrrLGAPvi~VeVtd~Qi~dcId~Alqly~EyHydG~~k~yl~~~~ted~~-~~~~~~~~~~v~a 77 (307) |.+ +||+|||||||||||||||||||||+||+||||||||+|+||||||++|+|++|++||||+ +|+|++++++||| T Consensus 1 m~~~~~s~~eLkdyiLRrLGAPii~InVtd~Qi~DcId~Alely~EyHydG~~k~y~~~~ite~~~~~g~~d~~d~~v~a 80 (307) T protein:vir:10 1 MSYTCNNPLELKDAILRRLGAPIVHVEVTEEQVFDCISRALELYGEYHYDGFHRTYATVVLTEQQAKTGIIDMKGGNVFA 80 (307) T ss_pred CCCCCCCHHHHHHHHHHhcCCceEEEEcCHHHHHHHHHHHHHHhhhhcccccccceEEEEechhhccCCEEecCCcchhh Confidence 888 9999999999999999999999999999999999999999999999999999999999998 5899999999999 Q ss_pred EEEEEeeccccccccCcccccccccchhhcccccccCCcccccccccccccchhHHHHHHHHHHHHHHHhcCcccccccc Q lcl|NC_014467. 78 VTKVLRTNIGSLVSMDGTAVYPWFTDFLMGLTGGSLGGRCASSVYGMNAYGADLGYFTQMMSYQRSMQELLAPLPDYWYN 157 (307) Q Consensus 78 Vt~i~r~~~g~~~~~~g~a~y~~~~dfv~g~~~~~~gg~~~~~~~g~na~g~~l~~f~~~~~Yq~~l~d~f~p~~~y~yn 157 (307) ||+|+||++|++.+|+|+|+|||||||++|++|.+++++ +++||||+||+++|||+++||||.+|+|||+|+|||||| T Consensus 81 vt~iirt~~~~~~t~dG~a~y~w~~d~~~g~~g~~~~~~--~~~~~~n~~g~~l~y~t~l~sy~~~m~d~~~pl~d~~yn 158 (307) T protein:vir:10 81 VTQVLRTNVGSIITMDGTAVYPWFTDFVMGMTGASIGGQ--CKWYGPNAFGGDLGYFTQLMSYRSMMGDLLSPLPDFYYN 158 (307) T ss_pred hhhhhhhccccccccCcccccccccccceeecCCcccee--eeeecccccccchhhhhHHHHHHHHHHhhcccccceeec Confidence 999999999999999999999999999999999887754 489999999999999999999999999999999999999 Q ss_pred CccceEEEEeeeccCceEEEeeecchhccchhhhhc-eecccccCCcccccCCchhhccChhhhhhcceeeccCCCCccc Q lcl|NC_014467. 158 DDTGQFCVWGKVNNGDIIVIEVMVRSFVDVPSAVGS-VAGYATAGSNAVEDQSIADIYDNPYNAVVGGVRAGQGTTVTGG 236 (307) Q Consensus 158 ~~t~~L~i~gn~~~gd~l~~e~~vk~f~~~~~~v~~-~~~y~~~~~~~~~d~~~~~~~~n~y~~~~~~~r~~~~~~~~~~ 236 (307) ++|+||+|++||++||+|+.|++||||+++++++++ +++|.+++.+..++|++.++|+||| ++++|||+++|++.++ T Consensus 159 ~~t~~l~i~~nf~~~d~i~~e~~~k~yle~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~t~- 236 (307) T protein:vir:10 159 SSSEMMKIAGQFKAGDLIVFEVYCKSYANVDTMLAGTSAGYGFAMSCDGDEPSQSQLYGNPN-LAGGAIYAGGSNGMLK- 236 (307) T ss_pred CCceeEEEeeeccCCceEEEEEEeccccchhhhhhcccccceEeeccccCCccchhhcCCch-hhcccccccCcccccc- Confidence 999999999999999999999999999999999966 4566655555556888999999997 9999999999999876 Q ss_pred cccCCchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHHhhcCCCCcccC Q lcl|NC_014467. 237 TSAYNNRWVKDYSTALVKEINGQILAKFQGMQLPGGVAPDGTRLIQEAETKLQGLRDELISMSDAVPIIMV 307 (307) Q Consensus 237 ~~~YNn~WvKdyATALvK~~wGqnL~KfqG~qLPGGvtlnG~~i~~eA~~Eie~LreeL~~~~~~ppl~mi 307 (307) +++|||||||||||||+||+|||||+|||||||||||||||+|||+||++|||+|||||+++|+||||+|= T Consensus 237 ~~~YNn~WvKdYaTAL~K~~wGq~L~K~qG~qLPGGvTldG~~i~eeA~~E~e~LreeL~~~~~~ppi~mg 307 (307) T protein:vir:10 237 DGAYNNRWVKDMSTAYVKELNGQVLAKHQGMQLPGGITIDGVRLIEEARIDIDKLRNELELLDAPPPIIMG 307 (307) T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHhhcCCCCccccC Confidence 89999999999999999999999999999999999999999999999999999999999999999999999 No 4 >protein:vir:101153 Length: 307 # NCBI annotation: neck protein # Family: family:all:1103 # MgeID: mge:1582 # MgeName: 44RR2.8t # Cross-refs: genbank:acc:NP_932504;genbank:gi:37651630;genbank:GeneID:2610646 Probab=100.00 E-value=2.7e-153 Score=857.04 Aligned_cols=303 Identities=51% Similarity=0.919 Sum_probs=290.1 Q ss_pred CCc--CCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhccchhceeEEEEeeeecc-ccceecCCCceeE Q lcl|NC_014467. 1 MIT--NNPEQLKDEILRRLGAPIIKIEITQDQIYDCIQRALDLYAEYHYNGTNKSYIILTLGEDNP-RNVFDLSKEHIFA 77 (307) Q Consensus 1 ~~~--~sr~~Lkd~ilrrLGAPvi~VeVtd~Qi~dcId~Alqly~EyHydG~~k~yl~~~~ted~~-~~~~~~~~~~v~a 77 (307) |.+ +||+|||||||||||||||||||||+||+||||||||+|+||||||++|+|++|++||||+ +|+|++++++||| T Consensus 1 m~~~~~s~~eLkdyiLRrLGAPii~InVtd~Qi~DcId~Alely~EyHydG~~k~y~~~~ite~~~~~g~~d~~d~~v~a 80 (307) T protein:vir:10 1 MSYTCNNPLELKDAILRRLGAPIVHVEVTEEQVFDCISRALELYGEYHYDGFHRTYATVVLTEQQAKTGIIDMKGGNVFA 80 (307) T ss_pred CCCCCCCHHHHHHHHHHhcCCceEEEEcCHHHHHHHHHHHHHHhhhhcccccccceEEEEechhhccCCEEecCCcchhh Confidence 888 9999999999999999999999999999999999999999999999999999999999998 5899999999999 Q ss_pred EEEEEeeccccccccCcccccccccchhhcccccccCCcccccccccccccchhHHHHHHHHHHHHHHHhcCcccccccc Q lcl|NC_014467. 78 VTKVLRTNIGSLVSMDGTAVYPWFTDFLMGLTGGSLGGRCASSVYGMNAYGADLGYFTQMMSYQRSMQELLAPLPDYWYN 157 (307) Q Consensus 78 Vt~i~r~~~g~~~~~~g~a~y~~~~dfv~g~~~~~~gg~~~~~~~g~na~g~~l~~f~~~~~Yq~~l~d~f~p~~~y~yn 157 (307) ||+|+||++|++.+|+|+|+|||||||++|++|.+++++ +++||||+||+++|||+++||||.+|+|||+|+|||||| T Consensus 81 vt~iirt~~~~~~t~dG~a~y~w~~d~~~g~~g~~~~~~--~~~~~~n~~g~~l~y~t~l~sy~~~m~d~~~pl~d~~yn 158 (307) T protein:vir:10 81 VTQVLRTNVGSIITMDGTAVYPWFTDFVMGMTGASIGGQ--CKWYGPNAFGGDLGYFTQLMSYRSMMGDLLSPLPDFYYN 158 (307) T ss_pred hhhhhhhccccccccCcccccccccccceeecCCcccee--eeeecccccccchhhhhHHHHHHHHHHhhcccccceeec Confidence 999999999999999999999999999999999887754 489999999999999999999999999999999999999 Q ss_pred CccceEEEEeeeccCceEEEeeecchhccchhhhhc-eecccccCCcccccCCchhhccChhhhhhcceeeccCCCCccc Q lcl|NC_014467. 158 DDTGQFCVWGKVNNGDIIVIEVMVRSFVDVPSAVGS-VAGYATAGSNAVEDQSIADIYDNPYNAVVGGVRAGQGTTVTGG 236 (307) Q Consensus 158 ~~t~~L~i~gn~~~gd~l~~e~~vk~f~~~~~~v~~-~~~y~~~~~~~~~d~~~~~~~~n~y~~~~~~~r~~~~~~~~~~ 236 (307) ++|+||+|++||++||+|+.|++||||+++++++++ +++|.+++.+..++|++.++|+||| ++++|||+++|++.++ T Consensus 159 ~~t~~l~i~~nf~~~d~i~~e~~~k~yle~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~t~- 236 (307) T protein:vir:10 159 SSSEMMKIAGQFKAGDLIVFEVYCKSYANVDTMLAGTSAGYGFAMSCDGDEPSQSQLYGNPN-LAGGAIYAGGSNGMLK- 236 (307) T ss_pred CCceeEEEeeeccCCceEEEEEEeccccchhhhhhcccccceEeeccccCCccchhhcCCch-hhcccccccCcccccc- Confidence 999999999999999999999999999999999966 4566655555556888999999997 9999999999999876 Q ss_pred cccCCchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHHhhcCCCCcccC Q lcl|NC_014467. 237 TSAYNNRWVKDYSTALVKEINGQILAKFQGMQLPGGVAPDGTRLIQEAETKLQGLRDELISMSDAVPIIMV 307 (307) Q Consensus 237 ~~~YNn~WvKdyATALvK~~wGqnL~KfqG~qLPGGvtlnG~~i~~eA~~Eie~LreeL~~~~~~ppl~mi 307 (307) +++|||||||||||||+||+|||||+|||||||||||||||+|||+||++|||+|||||+++|+||||+|= T Consensus 237 ~~~YNn~WvKdYaTAL~K~~wGq~L~K~qG~qLPGGvTldG~~i~eeA~~E~e~LreeL~~~~~~ppi~mg 307 (307) T protein:vir:10 237 DGAYNNRWVKDMSTAYVKELNGQVLAKHQGMQLPGGITIDGVRLIEEARIDIDKLRNELELLDAPPPIIMG 307 (307) T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHhhcCCCCccccC Confidence 89999999999999999999999999999999999999999999999999999999999999999999999 No 5 >protein:vir:107900 Length: 311 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:2002 # MgeName: JS98 # Cross-refs: genbank:acc:YP_001595289;genbank:gi:161622595;genbank:GeneID:5783619 Probab=100.00 E-value=4.3e-152 Score=850.45 Aligned_cols=303 Identities=57% Similarity=0.946 Sum_probs=288.2 Q ss_pred CCc--CCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhccchhceeEEEEeeeecc----ccceecCCCc Q lcl|NC_014467. 1 MIT--NNPEQLKDEILRRLGAPIIKIEITQDQIYDCIQRALDLYAEYHYNGTNKSYIILTLGEDNP----RNVFDLSKEH 74 (307) Q Consensus 1 ~~~--~sr~~Lkd~ilrrLGAPvi~VeVtd~Qi~dcId~Alqly~EyHydG~~k~yl~~~~ted~~----~~~~~~~~~~ 74 (307) |.| +||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|++|+|++ .|+|++++.+ T Consensus 1 MA~~~~s~~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~ALely~EyHydG~~k~y~~~~it~dd~~~~~~g~~d~~~~~ 80 (311) T protein:vir:10 1 MASESYNPKQLKDAILRRLGAPITNIEVTTDQVYDCIQRALELYGEYHYNGYNKGYQAFYIGHDDEEKFRNGVFDLKGRN 80 (311) T ss_pred CCCCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhhccccccceEEEEecchhhhhccCCceecCCcc Confidence 885 8999999999999999999999999999999999999999999999999999999999875 6999999999 Q ss_pred eeEEEEEEeeccccccccCcccccccccchhhcccccccCCcccccccccccccchhHHHHHHHHHHHHHHHhcCccccc Q lcl|NC_014467. 75 IFAVTKVLRTNIGSLVSMDGTAVYPWFTDFLMGLTGGSLGGRCASSVYGMNAYGADLGYFTQMMSYQRSMQELLAPLPDY 154 (307) Q Consensus 75 v~aVt~i~r~~~g~~~~~~g~a~y~~~~dfv~g~~~~~~gg~~~~~~~g~na~g~~l~~f~~~~~Yq~~l~d~f~p~~~y 154 (307) |||||+|+||++|++++|+|+|||+||||||+|++|+++++++||+.||||+||++||||++++|||+||+|||+|+||| T Consensus 81 v~avt~i~~t~~gs~~s~dg~atY~w~~d~v~G~~~v~g~~~s~~~~~g~n~fg~~lgyf~~l~~Y~~~l~dl~~p~~d~ 160 (311) T protein:vir:10 81 IFAVTQILRTNVGSLTSMDGQATYPWFTDFVLGLAGINGGLGSSCNSFGPNAFGADLGYFTQLMQYRSMMQDLLVPLPDY 160 (311) T ss_pred hhHHHHhhccccccccCCCCcccccccCchhhhhhhhhccccccccccccccccchHHHHHHHHHHHHHHHHhhcccccc Confidence 99999999999999999999999999999999999998887666789999999999999999999999999999999999 Q ss_pred cccCccceEEEEeeeccCceEEEeeecchhccchhhhhceecccccCCcc-cccCCchhhccChhhhhhcceeeccCCCC Q lcl|NC_014467. 155 WYNDDTGQFCVWGKVNNGDIIVIEVMVRSFVDVPSAVGSVAGYATAGSNA-VEDQSIADIYDNPYNAVVGGVRAGQGTTV 233 (307) Q Consensus 155 ~yn~~t~~L~i~gn~~~gd~l~~e~~vk~f~~~~~~v~~~~~y~~~~~~~-~~d~~~~~~~~n~y~~~~~~~r~~~~~~~ 233 (307) |||++|+||+++|||++||+|++|+++|+|++++.+++++++|..++... ...|.+.++|+||| ++++|||||..++. T Consensus 161 ~yn~~t~~l~i~gnf~~g~~i~~e~~~k~~~~v~~~v~~~~~~~~~~~~~~~d~~~~~~~~~n~~-~~l~~~rag~dp~~ 239 (311) T protein:vir:10 161 WYNDATEQLKVMGNFVKGDFIVIEVYTRSFNGVDSMVGNTAGYGYASGGCDENEWSPGAIWDNPA-RRISGMRAGEDLGL 239 (311) T ss_pred ccccccceEEEeeccccccEEEEEEeccccccchhhhhhhhhhhcccccccccccccchhhcccc-cccccceeecCcch Confidence 99999999999999999999999999999999999999999999777654 56678899999997 89999999744444 Q ss_pred ccccccCCchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHHhhcCCCCcccC Q lcl|NC_014467. 234 TGGTSAYNNRWVKDYSTALVKEINGQILAKFQGMQLPGGVAPDGTRLIQEAETKLQGLRDELISMSDAVPIIMV 307 (307) Q Consensus 234 ~~~~~~YNn~WvKdyATALvK~~wGqnL~KfqG~qLPGGvtlnG~~i~~eA~~Eie~LreeL~~~~~~ppl~mi 307 (307) + |++|||||||||||||+|++|||||+|||||||||||||||+|||+||++|||+|||||++ +++||.+|| T Consensus 240 ~--~~~YNnrWvKdYaTALvK~~wGq~L~K~qG~qLPGGvTlnG~~i~eeA~~E~e~LreEl~~-~~~Pp~~li 310 (311) T protein:vir:10 240 Q--DGAYNNRWVKDYATALVKEVNGNILAKHQGMQLAGGTTVDGIRLIEEARLEKERLREELDL-LDPPTPILI 310 (311) T ss_pred h--hhhhhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCceeecHHHHHHHHHHHHHHHHHHHhh-cCCCchhcc Confidence 3 7899999999999999999999999999999999999999999999999999999999976 889999999 No 6 >protein:vir:100534 Length: 314 # NCBI annotation: gp13 head completion protein # Family: family:all:1103 # MgeID: mge:1488 # MgeName: 25 # Cross-refs: genbank:acc:YP_656375;genbank:gi:109290126;genbank:GeneID:4156512 Probab=100.00 E-value=1.4e-149 Score=836.60 Aligned_cols=303 Identities=53% Similarity=0.940 Sum_probs=293.6 Q ss_pred CCc--CCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhccchhceeEEEEeeeecc-ccceecCCCceeE Q lcl|NC_014467. 1 MIT--NNPEQLKDEILRRLGAPIIKIEITQDQIYDCIQRALDLYAEYHYNGTNKSYIILTLGEDNP-RNVFDLSKEHIFA 77 (307) Q Consensus 1 ~~~--~sr~~Lkd~ilrrLGAPvi~VeVtd~Qi~dcId~Alqly~EyHydG~~k~yl~~~~ted~~-~~~~~~~~~~v~a 77 (307) |.| +||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|++|||++ +|+|++++.++|| T Consensus 1 ma~~~~s~~eLkdyiLRrLGAPvi~InVtddQI~DcId~ALqlf~EyHyDG~~k~yl~~~ite~~~k~g~~d~~~~~v~a 80 (314) T protein:vir:10 1 MSYTTNNPLELKDAILRRLGAPIVHVEVTEQQVFDCISRALELYGEYHYDGFHKTYATVVLTEEQAKTGVISFAGGNVFA 80 (314) T ss_pred CCCCCCCHHHHHHHHHHhcCCceEEEEcCHHHHHHHHHHHHHHhhhhcccccccceEEEEechhhhcCCEEeeCCcccee Confidence 988 9999999999999999999999999999999999999999999999999999999999997 5899999999999 Q ss_pred EEEEEeeccccccccCcccccccccchhhcccccccCCcccccccccccccchhHHHHHHHHHHHHHHHhcCcccccccc Q lcl|NC_014467. 78 VTKVLRTNIGSLVSMDGTAVYPWFTDFLMGLTGGSLGGRCASSVYGMNAYGADLGYFTQMMSYQRSMQELLAPLPDYWYN 157 (307) Q Consensus 78 Vt~i~r~~~g~~~~~~g~a~y~~~~dfv~g~~~~~~gg~~~~~~~g~na~g~~l~~f~~~~~Yq~~l~d~f~p~~~y~yn 157 (307) ||+|+||+++++.+|+|+|||+|||||++|++|++++++| +.||||+||+++|||+|+||||+||+|||+|+|||||| T Consensus 81 vt~i~rt~~~~~~~~~g~a~Y~~~~d~~lG~~~~~~~~~~--~~~~pn~fg~~~~yf~~~m~y~~ml~d~~~pl~d~~~n 158 (314) T protein:vir:10 81 VTQVIRTNIGSIITMDGTAVYPWFTDFVMGMTGASIGGQC--RWYGPNAFGADLGYFTQLMSYRDMMGDMLSPLPDFFFN 158 (314) T ss_pred hhhhhhcccccccccCccccccccCceeeeeccccccccc--ceeccccccchhHHHHHHHHHHHHHHhhhccccccccc Confidence 9999999999999999999999999999999999988765 69999999999999999999999999999999999999 Q ss_pred CccceEEEEeeeccCceEEEeeecchhccchhhh--------hceecccccCCcccccCCchhhccChhhhhhcceeecc Q lcl|NC_014467. 158 DDTGQFCVWGKVNNGDIIVIEVMVRSFVDVPSAV--------GSVAGYATAGSNAVEDQSIADIYDNPYNAVVGGVRAGQ 229 (307) Q Consensus 158 ~~t~~L~i~gn~~~gd~l~~e~~vk~f~~~~~~v--------~~~~~y~~~~~~~~~d~~~~~~~~n~y~~~~~~~r~~~ 229 (307) ++|+||+|++||++||+|++|+++|+|+++++++ ++.+||.++.++....|++.++|.||+ +.+.++|||+ T Consensus 159 ~~~~~l~i~~nf~~~Dll~~e~~~k~~~~~d~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~nP~-~~~~~~~~g~ 237 (314) T protein:vir:10 159 STTEMMRVAGKLQKGDLLVFEVYCKSYANVDSMLSGVDSTLSGTSAGYGFAMSDDDSVPSVAQKYANPN-MSHGQIYAGQ 237 (314) T ss_pred CCcceEEEeecccCCcEEEEEEEeccccccchhccccccccceeeeeceecccccccchhhhhhhcCcc-cccceeeecc Confidence 9999999999999999999999999999999998 567899999999999999999999997 7779999999 Q ss_pred CCCCccccccCCchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHHhhcCCCCcccC Q lcl|NC_014467. 230 GTTVTGGTSAYNNRWVKDYSTALVKEINGQILAKFQGMQLPGGVAPDGTRLIQEAETKLQGLRDELISMSDAVPIIMV 307 (307) Q Consensus 230 ~~~~~~~~~~YNn~WvKdyATALvK~~wGqnL~KfqG~qLPGGvtlnG~~i~~eA~~Eie~LreeL~~~~~~ppl~mi 307 (307) |++.+ +|++|||||||||||||+||+|||||+|||||||||||||||+|||+||++|||+|||||+++|+|||++|= T Consensus 238 ~~~~~-~~~~yNnrWvKdYaTALvK~~wGqnL~K~qG~qLPGGVTldG~~l~eea~~E~e~Lreel~~~~~~pp~~mg 314 (314) T protein:vir:10 238 SNGMS-KDNSYNNRWVKDMATAFVKELNGQVLAKHQGMQLPGGVTIDGIRLIEEARIDIDKLRQELELLDGPPPIIMG 314 (314) T ss_pred ccccc-cccccchhhHHHHHHHHHHHHHHHHHHHhCCcccCCceeecHHHHHHHHHHHHHHHHHHHhhccCCCccccC Confidence 99875 499999999999999999999999999999999999999999999999999999999999999999999999 No 7 >protein:vir:5657 Length: 307 # NCBI annotation: gp13 # Family: family:all:1103 # MgeID: mge:119 # MgeName: KVP40 # Cross-refs: genbank:acc:NP_899596;genbank:gi:34419583;genbank:GeneID:2545698 Probab=100.00 E-value=1.5e-149 Score=836.48 Aligned_cols=301 Identities=39% Similarity=0.696 Sum_probs=288.7 Q ss_pred CCcCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhccchhceeEEEEeeeeccc-cceecCCCceeEEE Q lcl|NC_014467. 1 MITNNPEQLKDEILRRLGAPIIKIEITQDQIYDCIQRALDLYAEYHYNGTNKSYIILTLGEDNPR-NVFDLSKEHIFAVT 79 (307) Q Consensus 1 ~~~~sr~~Lkd~ilrrLGAPvi~VeVtd~Qi~dcId~Alqly~EyHydG~~k~yl~~~~ted~~~-~~~~~~~~~v~aVt 79 (307) --++||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|++||||++ |+|++ +++||||| T Consensus 4 ~~~~s~~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~Alqly~EyHydG~~k~y~~~~vte~~~~~G~~d~-~~~v~avt 82 (307) T protein:vir:56 4 YNATSPREMKDLILRRLGAPIVNVEVSEDQVYDCISRALELYIEYHPDGVNKTYSIISLSEEQAQTGIIDL-DIPATAIT 82 (307) T ss_pred CCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhhccccccceEEEEechhhccCCeEec-Ccchhhhh Confidence 23499999999999999999999999999999999999999999999999999999999999974 78888 55899999 Q ss_pred EEEeeccccccccCcccccccccchhhcccccccCCcccccccccccccchhHHHHHHHHHHHHHHHhcCccccccccCc Q lcl|NC_014467. 80 KVLRTNIGSLVSMDGTAVYPWFTDFLMGLTGGSLGGRCASSVYGMNAYGADLGYFTQMMSYQRSMQELLAPLPDYWYNDD 159 (307) Q Consensus 80 ~i~r~~~g~~~~~~g~a~y~~~~dfv~g~~~~~~gg~~~~~~~g~na~g~~l~~f~~~~~Yq~~l~d~f~p~~~y~yn~~ 159 (307) +|+|++ ++.+||+|+|+|+||||||+|++|++++++ |++.++++++|++||||+++||||++|+|+|+|+|+||||++ T Consensus 83 ~Iirt~-~s~~t~dg~aty~w~tdfi~~~~gv~g~~~-~~~~~~~~~~~~~l~y~~~~~sy~~~l~d~~~p~~d~~yn~~ 160 (307) T protein:vir:56 83 KILRAE-SSFFTMDGNATYSWFSDFLQGLAGGPGAGS-CNSYHQGMLGQGSLSDYWNLMSYKNMLTDLLSPEYDYWYNGV 160 (307) T ss_pred hhhccC-cccccCCCccccCccccceecccccccccc-eeeecccccchhhhhHHHHHHHHHHHHHhhcccccceeecCc Confidence 999999 999999999999999999999999997754 679999999999999999999999999999999999999999 Q ss_pred cceEEEEeeeccCceEEEeeecchhccchhhhhceecccccCCcccccCCchhhccChhhhhhcceeec-cCCCCccccc Q lcl|NC_014467. 160 TGQFCVWGKVNNGDIIVIEVMVRSFVDVPSAVGSVAGYATAGSNAVEDQSIADIYDNPYNAVVGGVRAG-QGTTVTGGTS 238 (307) Q Consensus 160 t~~L~i~gn~~~gd~l~~e~~vk~f~~~~~~v~~~~~y~~~~~~~~~d~~~~~~~~n~y~~~~~~~r~~-~~~~~~~~~~ 238 (307) |+||++++||++||+|++|+++|+|++++++++++++|+.+++|+|+||+++|+|+||| ++++|||++ +|++.+ +|+ T Consensus 161 ~~qL~~~~n~~~g~~~ive~~~~s~~~~~~~~~~~~~~~~~~~r~y~~~~~~~~~~n~~-~~~~~~~~~~dp~~~t-~~~ 238 (307) T protein:vir:56 161 NKQLRINANLSAGELIVVEAFVPSALLVSESATGIIGNKAATIGSYEDTTAQERWDDPY-SILRQNNTIGNPNQFA-EQN 238 (307) T ss_pred ceeeeeeeeeccCCeEEEEeeccchhhhhhhhhhhcceeeecCcccccCCchhhccCcc-eeeeccccccCCcccc-ccc Confidence 99999999999999999999999999999999999999999999999999999999998 999999985 888864 488 Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHHhhcCCCCcccC Q lcl|NC_014467. 239 AYNNRWVKDYSTALVKEINGQILAKFQGMQLPGGVAPDGTRLIQEAETKLQGLRDELISMSDAVPIIMV 307 (307) Q Consensus 239 ~YNn~WvKdyATALvK~~wGqnL~KfqG~qLPGGvtlnG~~i~~eA~~Eie~LreeL~~~~~~ppl~mi 307 (307) +|||||||||||||+||+|||||+|||||||||||||||+|||+||++|||||||||++ +++||.+|| T Consensus 239 ~YNn~WvKdYaTALvK~~wGqnL~K~qG~qLPGGVTlnG~~i~eeA~~E~e~LreEl~~-~~~P~~~li 306 (307) T protein:vir:56 239 AYSVRWVKDMATAMTKQMNGVILKKHQGLQLPGGITIDGKEIYDEATQEIERLREELMS-LTVPLGVFM 306 (307) T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHhh-ccCCchhhc Confidence 99999999999999999999999999999999999999999999999999999999999 999999999 No 8 >protein:vir:81013 Length: 310 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:1888 # MgeName: Phi1 # Cross-refs: genbank:acc:YP_001469493;genbank:gi:157311450;genbank:GeneID:5602275 Probab=100.00 E-value=3.6e-148 Score=828.92 Aligned_cols=302 Identities=52% Similarity=0.929 Sum_probs=276.5 Q ss_pred CCcCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhccchhceeEEEEeeeecc-ccceecCCCceeEEE Q lcl|NC_014467. 1 MITNNPEQLKDEILRRLGAPIIKIEITQDQIYDCIQRALDLYAEYHYNGTNKSYIILTLGEDNP-RNVFDLSKEHIFAVT 79 (307) Q Consensus 1 ~~~~sr~~Lkd~ilrrLGAPvi~VeVtd~Qi~dcId~Alqly~EyHydG~~k~yl~~~~ted~~-~~~~~~~~~~v~aVt 79 (307) -.++||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|++||||+ +|+|++++++||||| T Consensus 4 ~~~~s~~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~Alely~EyHydG~~k~yl~~~ited~~~~g~~d~~d~~v~avt 83 (310) T protein:vir:81 4 YVTNNPRELKDAILRRLGAPVINVEVTEDQIYDCIQRALELYGEYHFDGVNKGYKVFRVSAEQAQHGVFDLSDSGVFAVT 83 (310) T ss_pred CCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhcccccccceEEEEechhhhcCCeeeeCCcceeeee Confidence 2349999999999999999999999999999999999999999999999999999999999997 589999999999999 Q ss_pred EEEeeccccccccCcccccccccchhhcccccccC-CcccccccccccccchhHHHHHHHHHHHHHHHhcCccccccccC Q lcl|NC_014467. 80 KVLRTNIGSLVSMDGTAVYPWFTDFLMGLTGGSLG-GRCASSVYGMNAYGADLGYFTQMMSYQRSMQELLAPLPDYWYND 158 (307) Q Consensus 80 ~i~r~~~g~~~~~~g~a~y~~~~dfv~g~~~~~~g-g~~~~~~~g~na~g~~l~~f~~~~~Yq~~l~d~f~p~~~y~yn~ 158 (307) +|+||++|++++|||+|||+||||||+|++|++++ |++|++.||||++|++|+||+++|||++++++||+|+|+||||+ T Consensus 84 ~i~~t~~g~~~t~dg~a~Y~~~~d~v~Gi~~v~g~~~~~~~~~~~~~~~g~~l~y~~~l~~y~~~~q~~ln~lpdy~yn~ 163 (310) T protein:vir:81 84 KIIRTNVGSAATMDGTAVYPWFTDFLLGLAGVNGGLGSGCSKFYGPNAMGGDLGYFEQLMSYRATMQNMLNPLPDYWYNS 163 (310) T ss_pred hhhhccccccccccccccccccCceeeeeccccccccchhhhhccccccchhhhhhhHHHHHHHHHHHHhCcccccccCC Confidence 99999999999999999999999999999999988 67888999999999999999999999999999999999999999 Q ss_pred ccceEEEEeeeccCceEEEeeecchhccchhhhhceeccc---ccCCcccccCCchhhccChhhhhhcceeeccCCCCcc Q lcl|NC_014467. 159 DTGQFCVWGKVNNGDIIVIEVMVRSFVDVPSAVGSVAGYA---TAGSNAVEDQSIADIYDNPYNAVVGGVRAGQGTTVTG 235 (307) Q Consensus 159 ~t~~L~i~gn~~~gd~l~~e~~vk~f~~~~~~v~~~~~y~---~~~~~~~~d~~~~~~~~n~y~~~~~~~r~~~~~~~~~ 235 (307) +||||+|++||++||+|++|+|||||+|+++++++.++|. .++++.|.+.++.+...+.+ .+++|||..+|. T Consensus 164 ~~~ql~i~~nf~~gd~ii~e~~~ks~le~~d~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---- 238 (310) T protein:vir:81 164 ANGQLKITGNFREGDLIVVELYVKSYVDVPDMIGAVAGYAHAGGCSTAGGISAVYDNPTAGLS-GIVAGMGPISEN---- 238 (310) T ss_pred ccceeeeeeecccCcEEEEEEEeecccCchhhhhcccceeEEcccCCccccccccccchhhhc-eeeeecccCCCc---- Confidence 9999999999999999999999999999999999966555 44555554444443333333 455666665553 Q ss_pred ccccCCchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHHhhcCCCCcccC Q lcl|NC_014467. 236 GTSAYNNRWVKDYSTALVKEINGQILAKFQGMQLPGGVAPDGTRLIQEAETKLQGLRDELISMSDAVPIIMV 307 (307) Q Consensus 236 ~~~~YNn~WvKdyATALvK~~wGqnL~KfqG~qLPGGvtlnG~~i~~eA~~Eie~LreeL~~~~~~ppl~mi 307 (307) +|++|||||||||||||+||+|||||+|||||||||||||||+|||+||++|||+|||||+.+.+|+|++|| T Consensus 239 ~~~~YNnrWvKdYaTAL~K~~wGqnL~K~qG~qLPGGVTlnG~~i~eeA~~E~e~LreEl~~~~pP~~i~~~ 310 (310) T protein:vir:81 239 KQGAYNNRWVKDMATAFTKEVWGSIMAKHQGLQLPGGVTVDGIRIIEEARADIEKLRQELELLDPPFGILMI 310 (310) T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHHhhCCCCCeeeC Confidence 388999999999999999999999999999999999999999999999999999999999989999999999 No 9 >protein:vir:6589 Length: 310 # NCBI annotation: neck protein # Family: family:all:1103 # MgeID: mge:139 # MgeName: RB49 # Cross-refs: genbank:acc:NP_891720;genbank:gi:33620666;genbank:GeneID:1725419 Probab=100.00 E-value=3.6e-148 Score=828.92 Aligned_cols=302 Identities=52% Similarity=0.929 Sum_probs=276.5 Q ss_pred CCcCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhccchhceeEEEEeeeecc-ccceecCCCceeEEE Q lcl|NC_014467. 1 MITNNPEQLKDEILRRLGAPIIKIEITQDQIYDCIQRALDLYAEYHYNGTNKSYIILTLGEDNP-RNVFDLSKEHIFAVT 79 (307) Q Consensus 1 ~~~~sr~~Lkd~ilrrLGAPvi~VeVtd~Qi~dcId~Alqly~EyHydG~~k~yl~~~~ted~~-~~~~~~~~~~v~aVt 79 (307) -.++||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|++||||+ +|+|++++++||||| T Consensus 4 ~~~~s~~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~Alely~EyHydG~~k~yl~~~ited~~~~g~~d~~d~~v~avt 83 (310) T protein:vir:65 4 YVTNNPRELKDAILRRLGAPVINVEVTEDQIYDCIQRALELYGEYHFDGVNKGYKVFRVSAEQAQHGVFDLSDSGVFAVT 83 (310) T ss_pred CCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhcccccccceEEEEechhhhcCCeeeeCCcceeeee Confidence 2349999999999999999999999999999999999999999999999999999999999997 589999999999999 Q ss_pred EEEeeccccccccCcccccccccchhhcccccccC-CcccccccccccccchhHHHHHHHHHHHHHHHhcCccccccccC Q lcl|NC_014467. 80 KVLRTNIGSLVSMDGTAVYPWFTDFLMGLTGGSLG-GRCASSVYGMNAYGADLGYFTQMMSYQRSMQELLAPLPDYWYND 158 (307) Q Consensus 80 ~i~r~~~g~~~~~~g~a~y~~~~dfv~g~~~~~~g-g~~~~~~~g~na~g~~l~~f~~~~~Yq~~l~d~f~p~~~y~yn~ 158 (307) +|+||++|++++|||+|||+||||||+|++|++++ |++|++.||||++|++|+||+++|||++++++||+|+|+||||+ T Consensus 84 ~i~~t~~g~~~t~dg~a~Y~~~~d~v~Gi~~v~g~~~~~~~~~~~~~~~g~~l~y~~~l~~y~~~~q~~ln~lpdy~yn~ 163 (310) T protein:vir:65 84 KIIRTNVGSAATMDGTAVYPWFTDFLLGLAGVNGGLGSGCSKFYGPNAMGGDLGYFEQLMSYRATMQNMLNPLPDYWYNS 163 (310) T ss_pred hhhhccccccccccccccccccCceeeeeccccccccchhhhhccccccchhhhhhhHHHHHHHHHHHHhCcccccccCC Confidence 99999999999999999999999999999999988 67888999999999999999999999999999999999999999 Q ss_pred ccceEEEEeeeccCceEEEeeecchhccchhhhhceeccc---ccCCcccccCCchhhccChhhhhhcceeeccCCCCcc Q lcl|NC_014467. 159 DTGQFCVWGKVNNGDIIVIEVMVRSFVDVPSAVGSVAGYA---TAGSNAVEDQSIADIYDNPYNAVVGGVRAGQGTTVTG 235 (307) Q Consensus 159 ~t~~L~i~gn~~~gd~l~~e~~vk~f~~~~~~v~~~~~y~---~~~~~~~~d~~~~~~~~n~y~~~~~~~r~~~~~~~~~ 235 (307) +||||+|++||++||+|++|+|||||+|+++++++.++|. .++++.|.+.++.+...+.+ .+++|||..+|. T Consensus 164 ~~~ql~i~~nf~~gd~ii~e~~~ks~le~~d~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---- 238 (310) T protein:vir:65 164 ANGQLKITGNFREGDLIVVELYVKSYVDVPDMIGAVAGYAHAGGCSTAGGISAVYDNPTAGLS-GIVAGMGPISEN---- 238 (310) T ss_pred ccceeeeeeecccCcEEEEEEEeecccCchhhhhcccceeEEcccCCccccccccccchhhhc-eeeeecccCCCc---- Confidence 9999999999999999999999999999999999966555 44555554444443333333 455666665553 Q ss_pred ccccCCchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHHhhcCCCCcccC Q lcl|NC_014467. 236 GTSAYNNRWVKDYSTALVKEINGQILAKFQGMQLPGGVAPDGTRLIQEAETKLQGLRDELISMSDAVPIIMV 307 (307) Q Consensus 236 ~~~~YNn~WvKdyATALvK~~wGqnL~KfqG~qLPGGvtlnG~~i~~eA~~Eie~LreeL~~~~~~ppl~mi 307 (307) +|++|||||||||||||+||+|||||+|||||||||||||||+|||+||++|||+|||||+.+.+|+|++|| T Consensus 239 ~~~~YNnrWvKdYaTAL~K~~wGqnL~K~qG~qLPGGVTlnG~~i~eeA~~E~e~LreEl~~~~pP~~i~~~ 310 (310) T protein:vir:65 239 KQGAYNNRWVKDMATAFTKEVWGSIMAKHQGLQLPGGVTVDGIRIIEEARADIEKLRQELELLDPPFGILMI 310 (310) T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHHhhCCCCCeeeC Confidence 388999999999999999999999999999999999999999999999999999999999989999999999 No 10 >protein:vir:7198 Length: 309 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:142 # MgeName: T4 # Cross-refs: genbank:acc:NP_049772;genbank:gi:9632587;genbank:GeneID:1258809 Probab=100.00 E-value=1.5e-148 Score=830.96 Aligned_cols=300 Identities=52% Similarity=0.942 Sum_probs=287.2 Q ss_pred CC---cCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhccchhceeEEEEeeeecc---ccceecCCCc Q lcl|NC_014467. 1 MI---TNNPEQLKDEILRRLGAPIIKIEITQDQIYDCIQRALDLYAEYHYNGTNKSYIILTLGEDNP---RNVFDLSKEH 74 (307) Q Consensus 1 ~~---~~sr~~Lkd~ilrrLGAPvi~VeVtd~Qi~dcId~Alqly~EyHydG~~k~yl~~~~ted~~---~~~~~~~~~~ 74 (307) |= ++||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|++|++|. +|+|++++++ T Consensus 1 m~~~~p~s~~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~Alqly~EyHydG~~k~yl~~~i~~de~~~~~gv~d~~~~~ 80 (309) T protein:vir:71 1 MSGYNPQNPKELKDVILRRLGAPIINVELTPDQIYDCIQRALELYGEYHFDGLNKGFHVFYVGDDEERYKTGVFDLRGSN 80 (309) T ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhhccccccceEEEEeCchhhhhcccceecCCcc Confidence 43 49999999999999999999999999999999999999999999999999999999998764 7999999999 Q ss_pred eeEEEEEEeeccccccccCcccccccccchhhcccccccC-CcccccccccccccchhHHHHHHHHHHHHHHHhcCcccc Q lcl|NC_014467. 75 IFAVTKVLRTNIGSLVSMDGTAVYPWFTDFLMGLTGGSLG-GRCASSVYGMNAYGADLGYFTQMMSYQRSMQELLAPLPD 153 (307) Q Consensus 75 v~aVt~i~r~~~g~~~~~~g~a~y~~~~dfv~g~~~~~~g-g~~~~~~~g~na~g~~l~~f~~~~~Yq~~l~d~f~p~~~ 153 (307) |||||+|+||++|++++|+|+|||+||||||+|++|+++| |++|++.||||+||++++||++++|||+||+|||+|+|| T Consensus 81 v~aVt~i~~t~~gs~~t~dg~aty~w~~dfi~g~~gi~g~~~~s~~~~~~pn~fg~dl~Y~~~l~sy~~m~qd~l~~~pd 160 (309) T protein:vir:71 81 VFAVTRILRTNIGSITSMDGNATYPWFTDFLLGMAGINGGMGTSCNRFYGPNAFGADLGYFTQLTSYMGMMQDMLSPIPD 160 (309) T ss_pred hhhhhhhhcCCcccccccCcccccccccchhhhhhhhhcccccccccccccchhhhhhHHHHHHHHHHHHHHHHhcccCC Confidence 9999999999999999999999999999999999998877 567788999999999999999999999999999999999 Q ss_pred ccccCccceEEEEeeeccCceEEEeeecchhccchhhhhceecccccCCcccccCCchhhccChhhhhhcceeeccCCCC Q lcl|NC_014467. 154 YWYNDDTGQFCVWGKVNNGDIIVIEVMVRSFVDVPSAVGSVAGYATAGSNAVEDQSIADIYDNPYNAVVGGVRAGQGTTV 233 (307) Q Consensus 154 y~yn~~t~~L~i~gn~~~gd~l~~e~~vk~f~~~~~~v~~~~~y~~~~~~~~~d~~~~~~~~n~y~~~~~~~r~~~~~~~ 233 (307) ||||++++||++++||++||+|++|+|+|+|++++++++++++|+.+++ ..+|.+.+.|+||...+.+|||+.+|++. T Consensus 161 ~~~N~~~~~l~i~gnf~~~~~i~~e~~~k~y~d~~~~v~~~~g~~~~~~--~d~~~~~~~y~~~~~~l~~~~r~~dp~~~ 238 (309) T protein:vir:71 161 FWFNSANEQLKVMGNFQKYDLIIVESWTKSYIDTNKMVGNTVGYGTVGP--QDSWSLSERYNNPDHNLVGRVVGQDPNVK 238 (309) T ss_pred cccccccceEEEEEeeeecceEEEEEeeccccccchhhhcchhhccccc--cccccceehhcccchhhhcceeccCCcch Confidence 9999999999999999999999999999999999999999999999865 46899999999999999999999999885 Q ss_pred ccccccCCchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHHhhcCCCCcccC Q lcl|NC_014467. 234 TGGTSAYNNRWVKDYSTALVKEINGQILAKFQGMQLPGGVAPDGTRLIQEAETKLQGLRDELISMSDAVPIIMV 307 (307) Q Consensus 234 ~~~~~~YNn~WvKdyATALvK~~wGqnL~KfqG~qLPGGvtlnG~~i~~eA~~Eie~LreeL~~~~~~ppl~mi 307 (307) |++|||||||||||||+|+||||||+|||||||||||||||+|||+||++|+|+|||||++++ ||++|| T Consensus 239 ---~~~YNn~WvKdYaTAL~K~~wGqnL~K~qG~qLPGGVTlnG~~i~eeA~~E~e~LreeL~~~~--pP~d~i 307 (309) T protein:vir:71 239 ---QGAYNNRWVKDYATALAKELNGQILARHQGMMLPGGVTIDGQRLIEEARLEKEALREELYLLD--PPFGIL 307 (309) T ss_pred ---hhhcchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHhhcc--CCCcce Confidence 779999999999999999999999999999999999999999999999999999999999988 555556 No 11 >protein:vir:103451 Length: 309 # NCBI annotation: neck protein # Family: family:all:1103 # MgeID: mge:1542 # MgeName: RB32 # Cross-refs: genbank:acc:YP_803103;genbank:gi:116326383;genbank:GeneID:4405480 Probab=100.00 E-value=4.6e-148 Score=828.36 Aligned_cols=301 Identities=52% Similarity=0.940 Sum_probs=285.6 Q ss_pred CC---cCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhccchhceeEEEEeeeecc---ccceecCCCc Q lcl|NC_014467. 1 MI---TNNPEQLKDEILRRLGAPIIKIEITQDQIYDCIQRALDLYAEYHYNGTNKSYIILTLGEDNP---RNVFDLSKEH 74 (307) Q Consensus 1 ~~---~~sr~~Lkd~ilrrLGAPvi~VeVtd~Qi~dcId~Alqly~EyHydG~~k~yl~~~~ted~~---~~~~~~~~~~ 74 (307) |= ++||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|+++++|. +|+|++++.+ T Consensus 1 ms~~~~~s~~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~Alqly~EyHydG~~k~y~~~~i~~de~~~~~gv~d~~~~~ 80 (309) T protein:vir:10 1 MSGYNSQNPKELKDVILRRLGAPIINVELTPDQIYDCIQRALELYGEYHFDGLNKGFHVFYVGDDEEKYKTGVFDLRGSN 80 (309) T ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhhccccccceEEEEeCchhhhhccceeeccCcc Confidence 43 49999999999999999999999999999999999999999999999999999999998764 5999999999 Q ss_pred eeEEEEEEeeccccccccCcccccccccchhhcccccccC-CcccccccccccccchhHHHHHHHHHHHHHHHhcCcccc Q lcl|NC_014467. 75 IFAVTKVLRTNIGSLVSMDGTAVYPWFTDFLMGLTGGSLG-GRCASSVYGMNAYGADLGYFTQMMSYQRSMQELLAPLPD 153 (307) Q Consensus 75 v~aVt~i~r~~~g~~~~~~g~a~y~~~~dfv~g~~~~~~g-g~~~~~~~g~na~g~~l~~f~~~~~Yq~~l~d~f~p~~~ 153 (307) |||||+|+||++|++.+|+|+|||+||||||+|++|+++| +++|++.||||+||++|+||++++|||++|+|+|+|+|+ T Consensus 81 v~avt~i~~t~~gs~~s~dg~aty~w~~dfi~g~~~v~g~~~~s~~~~~~pn~~g~dl~y~~~l~sy~~m~~d~l~~~pd 160 (309) T protein:vir:10 81 VFAVTRILRTNVGSITSMDGNATYPWFTDFLLGMAGINGGMGTSCNRFYGPNAFGADLGYFTQLTSYMGMMQDMLSPIPD 160 (309) T ss_pred hhhhhhhhhcccccccccCcccccccccchhhhhhhhhcccccccccccCcccceehhHHHHhHHHHHHHHHHHhcccCC Confidence 9999999999999999999999999999999999998877 567889999999999999999999999999999999999 Q ss_pred ccccCccceEEEEeeeccCceEEEeeecchhccchhhhhceecccccCCcccccCCchhhccChhhhhhcceeeccCCCC Q lcl|NC_014467. 154 YWYNDDTGQFCVWGKVNNGDIIVIEVMVRSFVDVPSAVGSVAGYATAGSNAVEDQSIADIYDNPYNAVVGGVRAGQGTTV 233 (307) Q Consensus 154 y~yn~~t~~L~i~gn~~~gd~l~~e~~vk~f~~~~~~v~~~~~y~~~~~~~~~d~~~~~~~~n~y~~~~~~~r~~~~~~~ 233 (307) ||||++++||++++||++||+|++|+|||+|+|++++|+++++|+.++. ...|.+.+.|+||...+++|||+.+|++. T Consensus 161 ~~yN~~~~~l~i~gn~~~~~~i~~e~~~k~y~d~~~~v~~~~g~~~~~~--~d~~~~~~~~~~~~~~l~~~~r~~dp~~~ 238 (309) T protein:vir:10 161 FWFNSANEQLKVMGNFQKYDLIIVESWTKSYIDTNKMVGNTVGYGTVGP--QDSWSLSERYNNPDHNLVGRVVGQDPDVK 238 (309) T ss_pred ceeccccceEEEEEeeecCceEEEEEecchhcccchhhccccccccccC--cccccccccccccchhhhcceeccCCcch Confidence 9999999999999999999999999999999999999999999999875 45799999999999999999999999885 Q ss_pred ccccccCCchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHHhhcCCCCcccC Q lcl|NC_014467. 234 TGGTSAYNNRWVKDYSTALVKEINGQILAKFQGMQLPGGVAPDGTRLIQEAETKLQGLRDELISMSDAVPIIMV 307 (307) Q Consensus 234 ~~~~~~YNn~WvKdyATALvK~~wGqnL~KfqG~qLPGGvtlnG~~i~~eA~~Eie~LreeL~~~~~~ppl~mi 307 (307) |++|||||||||||||+|++|||||+|||||||||||||||+|||+||++|+|+|||||+++.+|+|+ +| T Consensus 239 ---~~~YNn~WvKdYaTAL~K~~wGqnL~K~qG~qLPGGVTlnG~~i~eeA~~E~e~LreeL~~l~pP~~~-i~ 308 (309) T protein:vir:10 239 ---QGAYNNRWVKDYATALAKELNGQILARHQGMMLPGGVTIDGQRLIEEARLEKEALREELYLLDPPFGI-FV 308 (309) T ss_pred ---hhhcchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHHhccCCccc-cc Confidence 77999999999999999999999999999999999999999999999999999999999985444443 34 No 12 >protein:vir:106428 Length: 306 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:1474 # MgeName: Aeh1 # Cross-refs: genbank:acc:NP_944100;genbank:gi:38640144;genbank:GeneID:2658189 Probab=100.00 E-value=3.2e-147 Score=823.70 Aligned_cols=301 Identities=42% Similarity=0.717 Sum_probs=291.0 Q ss_pred CCc----CCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhccchhceeEEEEeeeecc-ccceecCCCce Q lcl|NC_014467. 1 MIT----NNPEQLKDEILRRLGAPIIKIEITQDQIYDCIQRALDLYAEYHYNGTNKSYIILTLGEDNP-RNVFDLSKEHI 75 (307) Q Consensus 1 ~~~----~sr~~Lkd~ilrrLGAPvi~VeVtd~Qi~dcId~Alqly~EyHydG~~k~yl~~~~ted~~-~~~~~~~~~~v 75 (307) |++ +||+|||||||||||||||||||||+||+||||||||+|+||||||++|+|++|++|||++ +|+|+++|++| T Consensus 1 ~Ms~~~~~s~~eLkdyiLRrLGAPii~IeVtd~Qi~DcIdrAlely~EyHydG~~k~y~~~~i~ed~~~~g~~d~~~~~v 80 (306) T protein:vir:10 1 MMSNNFVRNPRELKDLILRRLGAPVIQVEVTEDHIYDSIGRALELYKEYHHDGLNKAYLSVKLNQEQAATGYIDISAYPV 80 (306) T ss_pred CCCccCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHHhhhhccccccceEEEEechhcccCCeEecCCccc Confidence 666 9999999999999999999999999999999999999999999999999999999999997 48999999999 Q ss_pred eEEEEEEeeccccccccCcccccccccchhhcccccccCCcccccccccccccchhHHHHHHHHHHHHHHHhcCcccccc Q lcl|NC_014467. 76 FAVTKVLRTNIGSLVSMDGTAVYPWFTDFLMGLTGGSLGGRCASSVYGMNAYGADLGYFTQMMSYQRSMQELLAPLPDYW 155 (307) Q Consensus 76 ~aVt~i~r~~~g~~~~~~g~a~y~~~~dfv~g~~~~~~gg~~~~~~~g~na~g~~l~~f~~~~~Yq~~l~d~f~p~~~y~ 155 (307) ||||+|+|+++|++.+|+|+|+|+||+||++|++|++. |++.|||++||++|+||+++||||++|+|||+|+|||| T Consensus 81 ~aVtkI~r~~~g~~~tm~Gna~~~~~q~FL~~l~~~~~----~~~~~g~~~~g~dL~yy~~~~sy~~~lq~ml~p~pDf~ 156 (306) T protein:vir:10 81 FAITKIIRHKSMMWGGLGGGATLNFFTDFLTTLGGGPQ----GISYHGPFGALGNIGFFAQFQSYQNMMMDQLDPLPDYW 156 (306) T ss_pred eeeeeeeccCcceeeeccccccccchhhhhhhhccccc----chhhccchhhhhhhhHHHHHHHHHHHHHHHhcccccee Confidence 99999999999999999999999999999999987654 56889999999999999999999999999999999999 Q ss_pred ccCccceEEEEeeeccCceEEEeeecchhccchhhhhceecccccCCcccccCCchhhccChhhhhhcceeeccCCCCcc Q lcl|NC_014467. 156 YNDDTGQFCVWGKVNNGDIIVIEVMVRSFVDVPSAVGSVAGYATAGSNAVEDQSIADIYDNPYNAVVGGVRAGQGTTVTG 235 (307) Q Consensus 156 yn~~t~~L~i~gn~~~gd~l~~e~~vk~f~~~~~~v~~~~~y~~~~~~~~~d~~~~~~~~n~y~~~~~~~r~~~~~~~~~ 235 (307) ||++++||+|.+||++||.|++|++||+|++++++++++++|+.+++.. .+|+..++|+||| +.+.+||||++++++. T Consensus 157 ~n~~~~ql~i~~nf~~~D~l~~e~~~ks~~~v~~~~~~~~g~g~~~~~~-~~~~~~~~~~np~-~~l~~~~~g~~~~~~~ 234 (306) T protein:vir:10 157 LDPVNGVVQLTGNFRENDVIIMEVHIQNFVELEKSVRGVAGAGIVAGGP-TSADNKDKWMNPY-SRMPSNVAGRARSEFP 234 (306) T ss_pred EcCCcceEEEEEeecCCcEEEEEeecccccccchhhhcccccccccCCc-cccchhhhhccch-hhhccccccccCCCcc Confidence 9999999999999999999999999999999999999999999997554 4789999999998 8899999999999999 Q ss_pred ccccCCchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHHhhcCCCCcccC Q lcl|NC_014467. 236 GTSAYNNRWVKDYSTALVKEINGQILAKFQGMQLPGGVAPDGTRLIQEAETKLQGLRDELISMSDAVPIIMV 307 (307) Q Consensus 236 ~~~~YNn~WvKdyATALvK~~wGqnL~KfqG~qLPGGvtlnG~~i~~eA~~Eie~LreeL~~~~~~ppl~mi 307 (307) +|++|||||||||||||+|++|||||+|||||||||||||||+|||+||++|+|+|||||+++|+|||++|= T Consensus 235 ~~~~YNnrWvKdYaTAL~K~~wGq~L~K~qG~qLPGGVTvdG~~i~eeA~~E~e~LreEL~~~~~~ppi~mg 306 (306) T protein:vir:10 235 DQGVYNVRWVKDYATTLTKEVWGEILAKHQGMSLPGGVTVDGTRLVEEARQEKEVLRQELLLLEEPLPILMG 306 (306) T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHhhhccCCCccccC Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 No 13 >protein:vir:106985 Length: 276 # NCBI annotation: neck protein gp13 # Family: family:all:1103 # MgeID: mge:1459 # MgeName: S-PM2 # Cross-refs: genbank:acc:YP_195127;genbank:gi:58532904;uniprot:Q5GQW0;genbank:GeneID:3260482 Probab=100.00 E-value=6.5e-128 Score=717.85 Aligned_cols=272 Identities=23% Similarity=0.400 Sum_probs=251.1 Q ss_pred CCc-CCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhccchhceeEEEEeeeeccccceecCCCceeEEE Q lcl|NC_014467. 1 MIT-NNPEQLKDEILRRLGAPIIKIEITQDQIYDCIQRALDLYAEYHYNGTNKSYIILTLGEDNPRNVFDLSKEHIFAVT 79 (307) Q Consensus 1 ~~~-~sr~~Lkd~ilrrLGAPvi~VeVtd~Qi~dcId~Alqly~EyHydG~~k~yl~~~~ted~~~~~~~~~~~~v~aVt 79 (307) |=+ +||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|++||||+.. +++ T Consensus 1 ma~p~s~~eLkdyiLRrLGaPii~InVtd~Qi~DcId~Alely~EyHydG~~k~y~~~~i~~dd~~~----------~~~ 70 (276) T protein:vir:10 1 MAKPSSKQELIDYCKRQLGAPVLQINTDSAQDDDIIDQAIQYYHEYHFDGIERMYLKHQFTADDVTR----------FTS 70 (276) T ss_pred CCCCCCHHHHHHHHHHhcCCceEEEEcCHHHHHHHHHHHHHHhhhhcccccccceEEEEechHHhhh----------hhh Confidence 655 999999999999999999999999999999999999999999999999999999999999732 367 Q ss_pred EEEeeccccccccCcccccccccchhhcccccccCCcccccccccccccchhHHHHHHHHHHHHHHHhcCccccccccCc Q lcl|NC_014467. 80 KVLRTNIGSLVSMDGTAVYPWFTDFLMGLTGGSLGGRCASSVYGMNAYGADLGYFTQMMSYQRSMQELLAPLPDYWYNDD 159 (307) Q Consensus 80 ~i~r~~~g~~~~~~g~a~y~~~~dfv~g~~~~~~gg~~~~~~~g~na~g~~l~~f~~~~~Yq~~l~d~f~p~~~y~yn~~ 159 (307) .+++|++|++++|+|+|||+||||||+|++|+++ +||+.+|+|+||+++++| |+|+ ||++ T Consensus 71 ~~~~~~~~s~~~~~g~~~Y~~~pd~v~gi~~v~~---g~s~~~g~n~f~~~~q~f---------l~d~--------~~~~ 130 (276) T protein:vir:10 71 SDQLTTAPNNDDWENRNNYIQVPDAVIGISKVFG---VSSNFLRNNLFGLSNQYY---------LMDL--------FSFS 130 (276) T ss_pred hhhcccccceeeeeccCcceecCcchhhhhhhcc---cCccccCCccccccHHHH---------HHHH--------hccc Confidence 7899999999999999999999999999999974 356999999999975555 6676 8999 Q ss_pred cceEEEEeeeccCceEEEeeecchhccchhhhhcee--cccccCCcccccCCchhhccChhhhhhcceeeccCCCCcccc Q lcl|NC_014467. 160 TGQFCVWGKVNNGDIIVIEVMVRSFVDVPSAVGSVA--GYATAGSNAVEDQSIADIYDNPYNAVVGGVRAGQGTTVTGGT 237 (307) Q Consensus 160 t~~L~i~gn~~~gd~l~~e~~vk~f~~~~~~v~~~~--~y~~~~~~~~~d~~~~~~~~n~y~~~~~~~r~~~~~~~~~~~ 237 (307) ++||+++|||+.+|++++|+++++ ++..-.....+ +|+.+++++|.|.++.++++||| ++++|||+++|.+. | T Consensus 131 ~~ql~~~g~~~~~dy~~ve~~~~~-id~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~r~~dP~~~---~ 205 (276) T protein:vir:10 131 TGSAFSFGNFDLTNYYMIKQHFET-IDMIINTGSLIEYRFNKRQDRLYIDIDTSRIVEDQY-LLIDCYRYLNPDDF---T 205 (276) T ss_pred ccceeeccceeeeeEEEEEEEecc-cceeecCCceeEEeeeccCCccccccccccccCCHH-HHhhcccccCCccc---c Confidence 999999999999999988888887 55555555555 55799999999999999999998 99999999999874 7 Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHHhhcCCCCcccC Q lcl|NC_014467. 238 SAYNNRWVKDYSTALVKEINGQILAKFQGMQLPGGVAPDGTRLIQEAETKLQGLRDELISMSDAVPIIMV 307 (307) Q Consensus 238 ~~YNn~WvKdyATALvK~~wGqnL~KfqG~qLPGGvtlnG~~i~~eA~~Eie~LreeL~~~~~~ppl~mi 307 (307) ++|||||||||||||+|++|||||+|||||||||||||||+|||+||++|+|+|||||+++|++||++|| T Consensus 206 ~~YNn~WvKdYaTAL~K~~wGq~L~K~qG~qLPGGvTvnG~~i~eeA~~E~e~L~eel~~~~~~Pp~~mi 275 (276) T protein:vir:10 206 QVYDDSFVKRYATALLKRQWGQNLIKYNSVQLPGGITLNGRQIWEDGNNEVRELESRMMTDYSLPPMDMI 275 (276) T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeeCHHHHHHHHHHHHHHHHHHHHhhcCCCceeec Confidence 8999999999999999999999999999999999999999999999999999999999999999999999 No 14 >protein:vir:104694 Length: 281 # NCBI annotation: T4-like neck protein # Family: family:all:1103 # MgeID: mge:1630 # MgeName: P-SSM2 # Cross-refs: genbank:acc:YP_214352;genbank:gi:61805992;genbank:GeneID:3294213 Probab=100.00 E-value=4.6e-127 Score=713.21 Aligned_cols=273 Identities=26% Similarity=0.428 Sum_probs=252.4 Q ss_pred CCc-CCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhccchhceeEEEEeeeecc-ccceecCCCceeEE Q lcl|NC_014467. 1 MIT-NNPEQLKDEILRRLGAPIIKIEITQDQIYDCIQRALDLYAEYHYNGTNKSYIILTLGEDNP-RNVFDLSKEHIFAV 78 (307) Q Consensus 1 ~~~-~sr~~Lkd~ilrrLGAPvi~VeVtd~Qi~dcId~Alqly~EyHydG~~k~yl~~~~ted~~-~~~~~~~~~~v~aV 78 (307) |=+ +||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|++|+|++ +|+|+++++++||| T Consensus 1 ma~p~s~~eLkdyiLRrLGAPii~InVtd~Qi~DcId~Alely~EyHydG~~k~y~~~~i~~d~~~~g~~d~~~~~~~av 80 (281) T protein:vir:10 1 MAKPASRQQLIDYCLRKLGAPVLEINLDDDQIDDSVDDAIQLFNERHFDGVERMFLKYKITQADLDRGRAKGTDGVGIVT 80 (281) T ss_pred CCCCCCHHHHHHHHHHhcCCceEEEEcCHHHHHHHHHHHHHHhhhhcccccccceEEEEechhhhhcceeeecCcceeEE Confidence 655 9999999999999999999999999999999999999999999999999999999999997 69999999999999 Q ss_pred EEEEeeccccccccCccccccccc--chhhcccccccCCcccccccccccccchhHHHHHHHHHHHHHHHhcCccccccc Q lcl|NC_014467. 79 TKVLRTNIGSLVSMDGTAVYPWFT--DFLMGLTGGSLGGRCASSVYGMNAYGADLGYFTQMMSYQRSMQELLAPLPDYWY 156 (307) Q Consensus 79 t~i~r~~~g~~~~~~g~a~y~~~~--dfv~g~~~~~~gg~~~~~~~g~na~g~~l~~f~~~~~Yq~~l~d~f~p~~~y~y 156 (307) |+|+||+++ |+|+|+||||+ +|+.+-.++ .+++++||++++++++|+|+ ++||.+|+|+ ||| T Consensus 81 t~i~~t~~~----~~G~at~~w~~~~ny~~~p~~v----~G~~~~~g~~s~~~~~~~f~--~~yq~~lndl------y~~ 144 (281) T protein:vir:10 81 TTATSTNIA----GYGTTTSSWYETSNFLQVPDSV----VGIEKIFKFDTSTISGGMFS--IKYQLFLNDL------YNF 144 (281) T ss_pred Eeeeccccc----cccccccchhhcccceecCccc----eeeeeeccccccccCcceee--cchhhhhhhh------ccC Confidence 999999866 89999999987 222222211 11348899999999999998 6999999999 777 Q ss_pred cCccceEEEEeeeccCceEEEeeecchhccchhhhhce---ecccccCCcccccCCchhhccChhhhhhcceeeccCCCC Q lcl|NC_014467. 157 NDDTGQFCVWGKVNNGDIIVIEVMVRSFVDVPSAVGSV---AGYATAGSNAVEDQSIADIYDNPYNAVVGGVRAGQGTTV 233 (307) Q Consensus 157 n~~t~~L~i~gn~~~gd~l~~e~~vk~f~~~~~~v~~~---~~y~~~~~~~~~d~~~~~~~~n~y~~~~~~~r~~~~~~~ 233 (307) ++.. |+.++|+++|+++++++++. ++|+++++|+|.|.+++++++||| .+++|||+++|++. T Consensus 145 ~~~~--------------L~~y~m~~qyl~~~d~v~n~~~~~~~n~~~drL~~d~d~~~~~~d~~-~~~~~y~~~dP~~~ 209 (281) T protein:vir:10 145 NSVE--------------LLQYSMVKSYLEDIDFLLTTDKQVRFNKRQDRLYLDIDWGAESLDNF-LVLDCYRALDPTSF 209 (281) T ss_pred Cchh--------------hhhhhhhhhhhhhhHhhcCCCceEEEeeeCCeEEEEEecccccCCCc-eEEeeeeccCCccc Confidence 7643 78899999999999999995 899999999999999999999998 99999999999885 Q ss_pred ccccccCCchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHHhhcCCCCcccC Q lcl|NC_014467. 234 TGGTSAYNNRWVKDYSTALVKEINGQILAKFQGMQLPGGVAPDGTRLIQEAETKLQGLRDELISMSDAVPIIMV 307 (307) Q Consensus 234 ~~~~~~YNn~WvKdyATALvK~~wGqnL~KfqG~qLPGGvtlnG~~i~~eA~~Eie~LreeL~~~~~~ppl~mi 307 (307) |++|||||||||||||+|++|||||+|||||||||||||||+|||+||++|+|+|||||+++|++||++|| T Consensus 210 ---~~~YNnrWvKdYaTAL~K~~wGq~L~K~qG~qLPGGvTvnG~~i~eeA~~E~e~L~eel~~~~~~pP~dmi 280 (281) T protein:vir:10 210 ---TQVYNDPFLKLYLTALMKRQWGQNLIKFRGVKLPGGIELNGREIFDDAERDIESLRSRMASEYELPPYDFV 280 (281) T ss_pred ---ccccchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHhhccCCCccccc Confidence 78999999999999999999999999999999999999999999999999999999999999999999999 No 15 >protein:vir:104585 Length: 268 # NCBI annotation: gp13 # Family: family:all:1103 # MgeID: mge:1548 # MgeName: P-SSM4 # Cross-refs: genbank:acc:YP_214649;genbank:gi:61806290;genbank:GeneID:3294640 Probab=100.00 E-value=9.4e-117 Score=656.69 Aligned_cols=259 Identities=23% Similarity=0.401 Sum_probs=232.0 Q ss_pred CCcCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhccchhceeEEEEeeeeccccceecCCCceeEEEE Q lcl|NC_014467. 1 MITNNPEQLKDEILRRLGAPIIKIEITQDQIYDCIQRALDLYAEYHYNGTNKSYIILTLGEDNPRNVFDLSKEHIFAVTK 80 (307) Q Consensus 1 ~~~~sr~~Lkd~ilrrLGAPvi~VeVtd~Qi~dcId~Alqly~EyHydG~~k~yl~~~~ted~~~~~~~~~~~~v~aVt~ 80 (307) --++||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|++|+++ T Consensus 4 ~~~~s~~eLkdyiLRrLGaPii~InVtd~Qi~DcId~Alely~EyHydG~~k~y~~f~vT~~~----------------- 66 (268) T protein:vir:10 4 TRPASKTELKDYALRRLGFPTIDINVATEQLDDLVEEAIDYYQEYHYNGSFQTFMRIEVTEAI----------------- 66 (268) T ss_pred CCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhcccccccceEEEEechHH----------------- Confidence 334999999999999999999999999999999999999999999999999999987665555 Q ss_pred EEeeccccccccCcccccccccchhhcccccccCCcccccccccccccchhHHHHHHHHHHHHHHHhcCccccccccCcc Q lcl|NC_014467. 81 VLRTNIGSLVSMDGTAVYPWFTDFLMGLTGGSLGGRCASSVYGMNAYGADLGYFTQMMSYQRSMQELLAPLPDYWYNDDT 160 (307) Q Consensus 81 i~r~~~g~~~~~~g~a~y~~~~dfv~g~~~~~~gg~~~~~~~g~na~g~~l~~f~~~~~Yq~~l~d~f~p~~~y~yn~~t 160 (307) |++.+++ +++|+++|+|+++|+ .|+|+++|+ +++|+++|+|++++++||+|+|+||||+.. T Consensus 67 --rt~~~~~-t~~~t~~~~~~~nyi---------------~~p~~~~Gv-~~vf~~~~~~~~~~~nm~~~~~q~~lnd~~ 127 (268) T protein:vir:10 67 --KTQAKGF-TQEGSTPWYGQDNYV---------------STPPGTLGI-NHVYTNIGASSIVPGNIFNIKYQIFLNDIY 127 (268) T ss_pred --hhccccc-cccccccccCCCcce---------------ecCccccch-hhhhccccccccccchhhcccchhhccccc Confidence 5665555 889999999888766 578999998 899999999999999999999999999966 Q ss_pred ceEEEEeeeccCceEEEeeecchhccchhhhh-c----eecccccCCcccccCCchhhccChhhhhhcceeeccCCCCcc Q lcl|NC_014467. 161 GQFCVWGKVNNGDIIVIEVMVRSFVDVPSAVG-S----VAGYATAGSNAVEDQSIADIYDNPYNAVVGGVRAGQGTTVTG 235 (307) Q Consensus 161 ~~L~i~gn~~~gd~l~~e~~vk~f~~~~~~v~-~----~~~y~~~~~~~~~d~~~~~~~~n~y~~~~~~~r~~~~~~~~~ 235 (307) ++..+| |+.+++.++|+++.++++ + .++|+.+++|+|.+.+|.+.+.+++ .+++|||..+|.+. T Consensus 128 -------~~~~~~-i~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~-~l~~~~~~~dp~~~-- 196 (268) T protein:vir:10 128 -------SMTHGQ-ILHYFLTSQYLETLDFVTNSQANRRVKWNEHSNRLYLDFDWDDLTVGDY-IMVDMTMRQDPTTF-- 196 (268) T ss_pred -------ccccee-EEEEEEeeeeecchhhhhccCCCcceeeecccCceeeeeeccCcccchh-hhhhhhhccCCccc-- Confidence 567777 555555556666555544 4 3788999999999999999998886 89999999999875 Q ss_pred ccccCCchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHHhhcCCCCcccC Q lcl|NC_014467. 236 GTSAYNNRWVKDYSTALVKEINGQILAKFQGMQLPGGVAPDGTRLIQEAETKLQGLRDELISMSDAVPIIMV 307 (307) Q Consensus 236 ~~~~YNn~WvKdyATALvK~~wGqnL~KfqG~qLPGGvtlnG~~i~~eA~~Eie~LreeL~~~~~~ppl~mi 307 (307) |++|||||||||||||+|++|||||+|||||||||||||||+|||+||++|+|+|||||++++++||++|| T Consensus 197 -~~~YNn~WvKdYaTAL~K~~wGq~L~K~qG~qLPGGvTvnG~~i~eea~~E~e~L~eel~~~~~~Pp~~li 267 (268) T protein:vir:10 197 -TDMFNDNWLKDYVEALFQQQWGRNLSKYDGIQMLGGVTLNGRQILEDASKFKEDLEKDIRDRYEIPPLDLI 267 (268) T ss_pred -chhhhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCceeecHHHHHHHHHHHHHHHHHHHHhhcCCCccccc Confidence 78999999999999999999999999999999999999999999999999999999999999999999999 No 16 >protein:vir:103004 Length: 268 # NCBI annotation: gp109 # Family: family:all:1103 # MgeID: mge:1583 # MgeName: Syn9 # Cross-refs: genbank:acc:YP_717776;genbank:gi:113200738;genbank:GeneID:4239008 Probab=100.00 E-value=3.2e-116 Score=653.73 Aligned_cols=259 Identities=21% Similarity=0.359 Sum_probs=238.8 Q ss_pred CC---cCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhccchhceeEEEEeeeeccccceecCCCceeE Q lcl|NC_014467. 1 MI---TNNPEQLKDEILRRLGAPIIKIEITQDQIYDCIQRALDLYAEYHYNGTNKSYIILTLGEDNPRNVFDLSKEHIFA 77 (307) Q Consensus 1 ~~---~~sr~~Lkd~ilrrLGAPvi~VeVtd~Qi~dcId~Alqly~EyHydG~~k~yl~~~~ted~~~~~~~~~~~~v~a 77 (307) |= .+||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|++|+|++ T Consensus 1 Ms~~~~~s~~eLkdyiLRrLGaPii~InVtd~Qi~DcId~Alelf~EyHydG~~k~y~~~~it~~~~------------- 67 (268) T protein:vir:10 1 MSATRPASKTELKNYALRRLGYPAIDINVCDEQLDDLVEEAIDYFQEYHYNGSYQSMMKIEVTDAIK------------- 67 (268) T ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhhccchhcceEEEEechHHh------------- Confidence 32 39999999999999999999999999999999999999999999999999999999999996 Q ss_pred EEEEEeeccccccccCcccccccccchhhcccccccCCcccccccccccccchhHHHHHHHHHHHHHHHhcCcccccccc Q lcl|NC_014467. 78 VTKVLRTNIGSLVSMDGTAVYPWFTDFLMGLTGGSLGGRCASSVYGMNAYGADLGYFTQMMSYQRSMQELLAPLPDYWYN 157 (307) Q Consensus 78 Vt~i~r~~~g~~~~~~g~a~y~~~~dfv~g~~~~~~gg~~~~~~~g~na~g~~l~~f~~~~~Yq~~l~d~f~p~~~y~yn 157 (307) +.|++++|+|+++|+|++|||. ++|+++|+ +++|++.++|+++++++|+|.|+||+| T Consensus 68 -------~~g~~~t~~g~~~~~~~~~fi~---------------~pp~v~gv-~~vf~~~~~~~~~~~n~~~~~~q~~ln 124 (268) T protein:vir:10 68 -------TAAQSTTQQGSTNWYENNNYVS---------------LPPGVLGV-NHVYTNIGASSVVPGNIFNIKYQIFLN 124 (268) T ss_pred -------hhhhhcccCcccccccccccee---------------cCCceeeh-hhhhhcccccccccccccccchhhhhc Confidence 4578999999999999999993 67999999 699999999999999999999999999 Q ss_pred CccceEEEEeeeccCceEEEeeecchhccchhhhhc-----eecccccCCcccccCCchhhccChhhhhhcceeeccCCC Q lcl|NC_014467. 158 DDTGQFCVWGKVNNGDIIVIEVMVRSFVDVPSAVGS-----VAGYATAGSNAVEDQSIADIYDNPYNAVVGGVRAGQGTT 232 (307) Q Consensus 158 ~~t~~L~i~gn~~~gd~l~~e~~vk~f~~~~~~v~~-----~~~y~~~~~~~~~d~~~~~~~~n~y~~~~~~~r~~~~~~ 232 (307) +.++++. |+ |+-++|+++|+++.+++++ .++|++++.|+|.|.+|+....++| .+++|+|..+|++ T Consensus 125 d~~~~~~-------g~-il~y~~~~~~l~~~~~~~~s~~~~~~~~~~~~~rly~d~d~~~~~~~~~-~~i~~~~~~dP~~ 195 (268) T protein:vir:10 125 DIYAMTH-------GQ-ILHYFMTSQYLETLDWVTNSQANRRVKFNEHQARLYLDFDWDTLQAGDF-IMVDLTMRQDPDE 195 (268) T ss_pred chhhhhH-------Hh-hhhhhhccceeehhhhhhcccCccceEEEeeeceeEEeeccCCcccchh-hhhHhhcccCCch Confidence 9998872 11 4445566667777666654 3899999999999999999999997 7999999999987 Q ss_pred CccccccCCchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHHhhcCCCCcccC Q lcl|NC_014467. 233 VTGGTSAYNNRWVKDYSTALVKEINGQILAKFQGMQLPGGVAPDGTRLIQEAETKLQGLRDELISMSDAVPIIMV 307 (307) Q Consensus 233 ~~~~~~~YNn~WvKdyATALvK~~wGqnL~KfqG~qLPGGvtlnG~~i~~eA~~Eie~LreeL~~~~~~ppl~mi 307 (307) . |++|||||||||||||+|++|||||+|||||||||||||||+|||+||++|+|+|||||+++|++||++|| T Consensus 196 ~---~~~YNn~WvKdYatAL~K~~wGq~L~K~qG~qLPGGvTlnG~~i~eeA~~E~e~L~eel~~~~~~Pp~~li 267 (268) T protein:vir:10 196 Y---TGMYNDAWLKDYVEALFQQQWGRNLSKYDGIQMLGGVTLNGRQILEDASQFKKDLEENIRKEYELPPMDLI 267 (268) T ss_pred h---hhhhhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCceeeCHHHHHHHHHHHHHHHHHHHHhhcCCCcceec Confidence 4 78999999999999999999999999999999999999999999999999999999999999999999999 No 17 >protein:vir:104694 Length: 281 # NCBI annotation: T4-like neck protein # Family: family:all:1103 # MgeID: mge:1630 # MgeName: P-SSM2 # Cross-refs: genbank:acc:YP_214352;genbank:gi:61805992;genbank:GeneID:3294213 Probab=95.23 E-value=0.00045 Score=38.95 Aligned_cols=216 Identities=13% Similarity=0.174 Sum_probs=116.7 Q ss_pred CCcCCHHHHHHHH---HHhcC--------CceEEEEecHHHHHHHHHHHHHHHHHhhccchhceeEEEEeeeecccccee Q lcl|NC_014467. 1 MITNNPEQLKDEI---LRRLG--------APIIKIEITQDQIYDCIQRALDLYAEYHYNGTNKSYIILTLGEDNPRNVFD 69 (307) Q Consensus 1 ~~~~sr~~Lkd~i---lrrLG--------APvi~VeVtd~Qi~dcId~Alqly~EyHydG~~k~yl~~~~ted~~~~~~~ 69 (307) =+-=..+++-|-| |..-| ---+.+.||+||+.+ .+..+ + ++ ++|- T Consensus 24 ~InVtd~Qi~DcId~Alely~EyHydG~~k~y~~~~i~~d~~~~-------------------g~~d~--~-~~--~~~a 79 (281) T protein:vir:10 24 EINLDDDQIDDSVDDAIQLFNERHFDGVERMFLKYKITQADLDR-------------------GRAKG--T-DG--VGIV 79 (281) T ss_pred EEEcCHHHHHHHHHHHHHHhhhhcccccccceEEEEechhhhhc-------------------ceeee--c-Cc--ceeE Confidence 1112233333333 33222 346789999999843 22222 1 11 2221 Q ss_pred cCCCceeEEEEEEeeccccccccCcccccccccchhhcccccccCCcc--cccccc--ccc--------ccchhHHHHHH Q lcl|NC_014467. 70 LSKEHIFAVTKVLRTNIGSLVSMDGTAVYPWFTDFLMGLTGGSLGGRC--ASSVYG--MNA--------YGADLGYFTQM 137 (307) Q Consensus 70 ~~~~~v~aVt~i~r~~~g~~~~~~g~a~y~~~~dfv~g~~~~~~gg~~--~~~~~g--~na--------~g~~l~~f~~~ 137 (307) ++ ++.-|.+- ..-....+|.+.++|...||+|+|++++.+..++ .++.|. ++. .+++|.+|.+. T Consensus 80 vt---~i~~t~~~-~~G~at~~w~~~~ny~~~p~~v~G~~~~~g~~s~~~~~~~f~~~yq~~lndly~~~~~~L~~y~m~ 155 (281) T protein:vir:10 80 TT---TATSTNIA-GYGTTTSSWYETSNFLQVPDSVVGIEKIFKFDTSTISGGMFSIKYQLFLNDLYNFNSVELLQYSMV 155 (281) T ss_pred EE---eeeccccc-cccccccchhhcccceecCccceeeeeeccccccccCcceeecchhhhhhhhccCCchhhhhhhhh Confidence 11 11111121 2323456888889999999999999997765443 222222 111 13788999999 Q ss_pred HHHHHHHHHhcCccccccccCccceEEEEe---eeccCceEEEeeecchhccchhhhhceecccccCCcccccCCchhhc Q lcl|NC_014467. 138 MSYQRSMQELLAPLPDYWYNDDTGQFCVWG---KVNNGDIIVIEVMVRSFVDVPSAVGSVAGYATAGSNAVEDQSIADIY 214 (307) Q Consensus 138 ~~Yq~~l~d~f~p~~~y~yn~~t~~L~i~g---n~~~gd~l~~e~~vk~f~~~~~~v~~~~~y~~~~~~~~~d~~~~~~~ 214 (307) +||++++..+|++.|.|+||.+.++|++-= ....++.++++++..- .|. +..++| T Consensus 156 ~qyl~~~d~v~n~~~~~~~n~~~drL~~d~d~~~~~~d~~~~~~~y~~~---dP~-------------------~~~~~Y 213 (281) T protein:vir:10 156 KSYLEDIDFLLTTDKQVRFNKRQDRLYLDIDWGAESLDNFLVLDCYRAL---DPT-------------------SFTQVY 213 (281) T ss_pred hhhhhhhHhhcCCCceEEEeeeCCeEEEEEecccccCCCceEEeeeecc---CCc-------------------cccccc Confidence 999999999999999999999999998733 5666777777776643 111 123344 Q ss_pred cChhhh-------------hhcceeecc-CCCCccccccCCchHHHHHHHHHHHHHHHHHHHHhc--CCcCCC Q lcl|NC_014467. 215 DNPYNA-------------VVGGVRAGQ-GTTVTGGTSAYNNRWVKDYSTALVKEINGQILAKFQ--GMQLPG 271 (307) Q Consensus 215 ~n~y~~-------------~~~~~r~~~-~~~~~~~~~~YNn~WvKdyATALvK~~wGqnL~Kfq--G~qLPG 271 (307) +|.|-+ ++.=|+-.+ |-.. .=|.+=+-+=|.+.+.+.-=+-+.++. .+-+-| T Consensus 214 NnrWvKdYaTAL~K~~wGq~L~K~qG~qLPGGv-----TvnG~~i~eeA~~E~e~L~eel~~~~~~pP~dmiG 281 (281) T protein:vir:10 214 NDPFLKLYLTALMKRQWGQNLIKFRGVKLPGGI-----ELNGREIFDDAERDIESLRSRMASEYELPPYDFVG 281 (281) T ss_pred chhHHHHHHHHHHHHHHHHHHHHhCCccCCCce-----eecHHHHHHHHHHHHHHHHHHHhhccCCCcccccC Confidence 444311 111111000 1111 234444555555555555555555553 122222 No 18 >protein:vir:103004 Length: 268 # NCBI annotation: gp109 # Family: family:all:1103 # MgeID: mge:1583 # MgeName: Syn9 # Cross-refs: genbank:acc:YP_717776;genbank:gi:113200738;genbank:GeneID:4239008 Probab=92.41 E-value=0.00042 Score=39.11 Aligned_cols=213 Identities=18% Similarity=0.238 Sum_probs=110.4 Q ss_pred CCcCCHHHHHHHHHH---hc--------CCceEEEEecHHHHHHHHHHHHHHHHHhhccchhceeEEEEeeeecccccee Q lcl|NC_014467. 1 MITNNPEQLKDEILR---RL--------GAPIIKIEITQDQIYDCIQRALDLYAEYHYNGTNKSYIILTLGEDNPRNVFD 69 (307) Q Consensus 1 ~~~~sr~~Lkd~ilr---rL--------GAPvi~VeVtd~Qi~dcId~Alqly~EyHydG~~k~yl~~~~ted~~~~~~~ 69 (307) =+-=..+++-|-|-| .- ----+.++||++++..- +. -..+|. ..+ .. .+.|. T Consensus 26 ~InVtd~Qi~DcId~Alelf~EyHydG~~k~y~~~~it~~~~~~g-----~~---~t~~g~----~~~----~~-~~~fi 88 (268) T protein:vir:10 26 DINVCDEQLDDLVEEAIDYFQEYHYNGSYQSMMKIEVTDAIKTAA-----QS---TTQQGS----TNW----YE-NNNYV 88 (268) T ss_pred EEecCHHHHHHHHHHHHHHhhhhhccchhcceEEEEechHHhhhh-----hh---cccCcc----ccc----cc-cccce Confidence 111122333333322 22 23456899999997311 00 001111 000 00 25566 Q ss_pred cCCCceeEEEEEEeeccccccccCcccccccccchhhcccccccCCcccccccccccccchhHHHHHHHHHHHHHHHhcC Q lcl|NC_014467. 70 LSKEHIFAVTKVLRTNIGSLVSMDGTAVYPWFTDFLMGLTGGSLGGRCASSVYGMNAYGADLGYFTQMMSYQRSMQELLA 149 (307) Q Consensus 70 ~~~~~v~aVt~i~r~~~g~~~~~~g~a~y~~~~dfv~g~~~~~~gg~~~~~~~g~na~g~~l~~f~~~~~Yq~~l~d~f~ 149 (307) ..|.+|++|++|+ +++++..++.|+...|+...|+.++++.. +|.-|+|| +..+|...+.-+++ T Consensus 89 ~~pp~v~gv~~vf-~~~~~~~~~~~n~~~~~~q~~lnd~~~~~--------------~g~il~y~-~~~~~l~~~~~~~~ 152 (268) T protein:vir:10 89 SLPPGVLGVNHVY-TNIGASSVVPGNIFNIKYQIFLNDIYAMT--------------HGQILHYF-MTSQYLETLDWVTN 152 (268) T ss_pred ecCCceeehhhhh-hcccccccccccccccchhhhhcchhhhh--------------HHhhhhhh-hccceeehhhhhhc Confidence 6788899998887 67788888888888888888888776432 23345666 33556655554433 Q ss_pred --ccccccccCccceEEEEee---eccCceEEEeeecchhccchhhhhceecccccCCcccccCCchhhccChhhh---- Q lcl|NC_014467. 150 --PLPDYWYNDDTGQFCVWGK---VNNGDIIVIEVMVRSFVDVPSAVGSVAGYATAGSNAVEDQSIADIYDNPYNA---- 220 (307) Q Consensus 150 --p~~~y~yn~~t~~L~i~gn---~~~gd~l~~e~~vk~f~~~~~~v~~~~~y~~~~~~~~~d~~~~~~~~n~y~~---- 220 (307) +...+-||.+.++|++..+ ...+|.+++|+.... .+. +....|+|.|-+ T Consensus 153 s~~~~~~~~~~~~~rly~d~d~~~~~~~~~~~i~~~~~~-----------------dP~-----~~~~~YNn~WvKdYat 210 (268) T protein:vir:10 153 SQANRRVKFNEHQARLYLDFDWDTLQAGDFIMVDLTMRQ-----------------DPD-----EYTGMYNDAWLKDYVE 210 (268) T ss_pred ccCccceEEEeeeceeEEeeccCCcccchhhhhHhhccc-----------------CCc-----hhhhhhhhhHHHHHHH Confidence 4455788888888888664 334444544444333 111 123344443311 Q ss_pred ---------hhcceeecc-CCCCccccccCCchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeec Q lcl|NC_014467. 221 ---------VVGGVRAGQ-GTTVTGGTSAYNNRWVKDYSTALVKEINGQILAKFQGMQLPGGVAPD 276 (307) Q Consensus 221 ---------~~~~~r~~~-~~~~~~~~~~YNn~WvKdyATALvK~~wGqnL~KfqG~qLPGGvtln 276 (307) ++.=|+..+ |-.. .=|.+=+-+=|.+.+++.-=+-+.++. +|-|+-+- T Consensus 211 AL~K~~wGq~L~K~qG~qLPGGv-----TlnG~~i~eeA~~E~e~L~eel~~~~~---~Pp~~liG 268 (268) T protein:vir:10 211 ALFQQQWGRNLSKYDGIQMLGGV-----TLNGRQILEDASQFKKDLEENIRKEYE---LPPMDLIG 268 (268) T ss_pred HHHHHHHHHHHHHhcCccCCCce-----eeCHHHHHHHHHHHHHHHHHHHHhhcC---CCcceecC Confidence 111222111 1111 245566666666666666666666665 44444443 Done!