Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : IME08 | Genbank acc : NC_014260

Category to which the Query Phage was assigned : Myoviridae of Type2 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 253

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	164	lcl\|NC_014260.1_cdsid_YP_003734314.1	HHsearch (proba=100.00%)
Portal	159	lcl\|NC_014260.1_cdsid_YP_003734309.1	HHsearch (proba=100.00%)
TermL	156	lcl\|NC_014260.1_cdsid_YP_003734306.1	Blast (e-value=0)
MTP	158	lcl\|NC_014260.1_cdsid_YP_003734308.1	Blast (e-value=2e-96)
Sheath	157	lcl\|NC_014260.1_cdsid_YP_003734307.1	HHsearch (proba=100.00%)
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	152	lcl\|NC_014260.1_cdsid_YP_003734302.1	HHsearch (proba=100.00%)
Hc2	153	lcl\|NC_014260.1_cdsid_YP_003734303.1	HHsearch (proba=100.00%)
Tc2	154	lcl\|NC_014260.1_cdsid_YP_003734304.1	HHsearch (proba=100.00%)
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:107947 protein:vir:103463 protein:vir:7214	JS98 RB32 T4	100 % 84 % 84 %
Portal	protein:vir:108049 protein:vir:7208 protein:vir:6896	JS98 T4 RB69	100 % 76 % 76 %
TermL	protein:vir:108053 protein:vir:6893 protein:vir:103455	JS98 RB69 RB32	100 % 84 % 83 %
MTP	protein:vir:108048 protein:vir:6895 protein:vir:98264	JS98 RB69 RB43	100 % 75 % 74 %
Sheath	protein:vir:108052 protein:vir:103456 protein:vir:6894	JS98 RB32 RB69	97 % 72 % 72 %
Ad2	protein:vir:107900 protein:vir:103451 protein:vir:7198	JS98 RB32 T4	96 % 67 % 66 %
Hc2	protein:vir:107937 protein:vir:103452 protein:vir:6890	JS98 RB32 RB69	98 % 69 % 69 %
Tc2	protein:vir:107931 protein:vir:81023 protein:vir:6591	JS98 Phi1 RB49	98 % 58 % 58 %