Query lcl|NC_014260.1_cdsid_YP_003734303.1 [gene=14] [protein=gp14 neck protein] [protein_id=YP_003734303.1] [location=92414..93232] Match_columns 272 No_of_seqs 30 out of 34 Neff 3.4 Searched_HMMs 1612 Date Thu Nov 7 15:05:29 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_153 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_153_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:107937 Length: 257 100.0 2E-145 1E-148 814.1 19.9 257 16-272 1-257 (257) 2 protein:vir:6890 Length: 254 # 100.0 1E-144 8E-148 809.5 20.1 254 16-271 1-254 (254) 3 protein:vir:7199 Length: 256 # 100.0 2E-144 1E-147 808.2 18.9 256 16-271 1-256 (256) 4 protein:vir:103452 Length: 256 100.0 8E-144 5E-147 805.1 18.8 256 16-271 1-256 (256) 5 protein:vir:98258 Length: 248 100.0 2E-137 1E-140 770.4 18.7 248 16-264 1-248 (248) 6 protein:vir:101154 Length: 252 100.0 2E-136 1E-139 764.8 19.1 252 18-270 1-252 (252) 7 protein:vir:101800 Length: 252 100.0 2E-136 1E-139 764.8 19.1 252 18-270 1-252 (252) 8 protein:vir:80995 Length: 246 100.0 3E-136 2E-139 763.9 18.7 246 18-268 1-246 (246) 9 protein:vir:6590 Length: 246 # 100.0 4E-136 3E-139 762.9 18.6 246 18-268 1-246 (246) 10 protein:vir:106285 Length: 262 100.0 8E-135 5E-138 755.7 17.3 253 16-272 1-262 (262) 11 protein:vir:100535 Length: 253 100.0 5E-134 3E-137 751.4 18.3 253 18-271 1-253 (253) 12 protein:vir:5658 Length: 278 # 100.0 6E-129 4E-132 723.4 17.4 257 16-272 1-268 (278) 13 protein:vir:104476 Length: 308 100.0 7E-113 4E-116 635.5 13.6 247 1-272 1-273 (308) 14 protein:vir:106986 Length: 292 100.0 4E-108 3E-111 609.3 14.5 232 40-272 1-252 (292) 15 protein:vir:103005 Length: 390 100.0 2.5E-96 1.6E-99 544.7 13.8 245 25-272 1-272 (390) 16 protein:vir:104739 Length: 470 100.0 1.6E-84 9.7E-88 480.0 12.7 229 40-272 1-254 (470) 17 protein:vir:97237 Length: 122 36.7 1.2 0.00072 20.2 10.2 121 42-188 1-122 (122) 18 protein:vir:1385 Length: 107 # 32.6 1.4 0.00088 19.8 8.4 106 68-190 1-107 (107) No 1 >protein:vir:107937 Length: 257 # NCBI annotation: gp14 neck protein # Family: family:all:1104 # MgeID: mge:2002 # MgeName: JS98 # Cross-refs: genbank:acc:YP_001595290;genbank:gi:161622596;genbank:GeneID:5783656 Probab=100.00 E-value=1.8e-145 Score=814.09 Aligned_cols=257 Identities=98% Similarity=1.509 Sum_probs=256.7 Q ss_pred eeecccceeeeecCCcchhhhhhhccccceeeccCcchhHHHHHHHHHHHHHhcCceEEEeeheeccccccccccccccc Q lcl|NC_014260. 16 MATFDSSLFAKLEDNTGYANTNETEIMNPFVNFYKHENTQTLADALVAESIQMRGIELYYIPREYVKPDQLFGEDLQNKF 95 (272) Q Consensus 16 m~~~d~~lfa~le~~~gy~~t~~~~~~NpYfN~~g~~~eQ~L~~~LV~EsIqm~Gvdv~YlpRe~v~~D~v~~Ed~~skF 95 (272) |+|||+|||||||+++||++||+++|||||||++||.+||+|+|+||+|||||||+|||||||++|++|+||+|+++||| T Consensus 1 m~~~d~~lfa~le~~~gy~~t~~~~~lnPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~skF 80 (257) T protein:vir:10 1 MATFDSSLFAKLENNTGYANTNETEIMNPFVNFYRHENTQTLADALVAESIQMRGIELYYIPREYVNPDQLFGEDLQNKF 80 (257) T ss_pred CcccccceeeeecCCcchhhhhhhccccceeecccCCchhHHHHHHHHHHHHHcCceEEEcchhhhcccccccccccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccceeeeeechhhhccCCccchhhhcCceeeeeEEEEEcchhHhHhhcCCCCccccEEEecCCCceEEEEeeccCCchhh Q lcl|NC_014260. 96 TKAWKFAGYLDSFEGYSGDNTYFSKFGMMVNDEVTITINPNLFKHQCNGTEPVSGDLIYFPMDNSLFEINWVQPYDPFYQ 175 (272) Q Consensus 96 ~~A~~ieaYl~n~eGy~g~gd~~SKFG~~~~DE~Tf~IS~~rF~~~v~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ 175 (272) ++||+|||||+||+||+|+|+||||||||++|||||+|||+||+++++|+||+|||||||||+|+||||+||||++|||| T Consensus 81 ~ka~~ieaYl~s~egy~G~~d~~SKFG~~v~DEvt~~Is~~rF~~~v~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ 160 (257) T protein:vir:10 81 TKAWKFAGYLDSFEGYSGDNTYFSKFGMMVNDEVTITINPNLFKHQCNGTEPVSGDLIYFPMDNSLFEINWVQPYDPFYQ 160 (257) T ss_pred ccceeEEEeeehhhccCCCcceeeecCceecceEEEEEccchhhhhccCCCCccccEEEEcCCCceEEEecccCCCchhh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cCCceEEEEEEEEEecCCCccCcCCccccccccCccchhhhhhhhhhcchhhcccchhhhhhhhhhhhhhhhccccccCC Q lcl|NC_014260. 176 VGANVQRRITATKFIYNGEELRPELQRNEGINIPEFSELDLMPVKNIDGLADISDIQYEEVNEINAEAAEFVHPYVVING 255 (272) Q Consensus 176 ~GK~yv~~l~ce~F~Ys~E~i~t~~~~iD~i~~~~~~~l~ld~I~~lDG~~d~~idq~~E~~~~~~e~~~~iep~~~i~~ 255 (272) +||+|||+|+|+||+||||+|.|++++++++.++++.+|||+||+|||||+|++++||+|++++++||++||||++|||| T Consensus 161 ~Gkn~~~~l~ce~F~Ys~E~l~pel~~n~~~~V~e~~eldl~~~~~ldG~~di~~~~~~E~~~~~~e~~~fi~p~~~~n~ 240 (257) T protein:vir:10 161 VGTNVQRRITATKFIYNGEELRPELQRNEGINIPEFSELDLMPVKNIDGLADISDIQYEEVNEINAEAAEFVHPYVVING 240 (257) T ss_pred hCCceEEEEEEEEeeeCCcccccccCCcccCCCCCccchhhhhhhhccchhhcCCchhhhHHHHHHhhhhhhccccccCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCCCccCccccccccC Q lcl|NC_014260. 256 RGEDAPPTAFDDAFLDD 272 (272) Q Consensus 256 ~g~~~~~~pf~~~~~~~ 272 (272) ||+++++|||||+|||+ T Consensus 241 ~g~~~~~~pf~~~~~~~ 257 (257) T protein:vir:10 241 RGEDAPPTAFDDAFLDD 257 (257) T ss_pred CCCCCCCCcccchhccC Confidence 99999999999999999 No 2 >protein:vir:6890 Length: 254 # NCBI annotation: gp14 neck protein # Family: family:all:1104 # MgeID: mge:140 # MgeName: RB69 # Cross-refs: genbank:acc:NP_861866;genbank:gi:32453657;genbank:GeneID:1494292 Probab=100.00 E-value=1.3e-144 Score=809.50 Aligned_cols=254 Identities=69% Similarity=1.183 Sum_probs=252.7 Q ss_pred eeecccceeeeecCCcchhhhhhhccccceeeccCcchhHHHHHHHHHHHHHhcCceEEEeeheeccccccccccccccc Q lcl|NC_014260. 16 MATFDSSLFAKLEDNTGYANTNETEIMNPFVNFYKHENTQTLADALVAESIQMRGIELYYIPREYVKPDQLFGEDLQNKF 95 (272) Q Consensus 16 m~~~d~~lfa~le~~~gy~~t~~~~~~NpYfN~~g~~~eQ~L~~~LV~EsIqm~Gvdv~YlpRe~v~~D~v~~Ed~~skF 95 (272) |+|||+|||||||+++||++||+++|||||||+|||++||+|+|+||+|||||||+|||||||++|++|+||+|+++||| T Consensus 1 m~~~d~~lfa~le~~~gy~~t~~~~~lNPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~skF 80 (254) T protein:vir:68 1 MATYDKNLFAKLENRGGYSQTNETEILNPFVNFNNYENSQTLADVLVAESIQMRGIECFYVPREYVAVDLIFGEDLKNKF 80 (254) T ss_pred CcccccceeeeecCCcchhhhhhccccceeEEeeccCchhHHHHHHHHHHHHHcCceEEEechhhhcccccccccccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccceeeeeechhhhccCCccchhhhcCceeeeeEEEEEcchhHhHhhcCCCCccccEEEecCCCceEEEEeeccCCchhh Q lcl|NC_014260. 96 TKAWKFAGYLDSFEGYSGDNTYFSKFGMMVNDEVTITINPNLFKHQCNGTEPVSGDLIYFPMDNSLFEINWVQPYDPFYQ 175 (272) Q Consensus 96 ~~A~~ieaYl~n~eGy~g~gd~~SKFG~~~~DE~Tf~IS~~rF~~~v~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ 175 (272) ++||+|||||+||+||+|+++||||||||++|||||+|||+||+++++++||+|||||||||+|+||||+||||++|||| T Consensus 81 ~ka~~ieaYl~s~egy~G~~d~~SKFG~~v~DEvt~~Is~~rF~~~v~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ 160 (254) T protein:vir:68 81 TKAWKFAAYLNSFEGYEGAKSFFSNFGMQVQDEVTLSINPGLFKHQVNNQEPKEGDLIYFPMDNSLFEINWVEPYDPFYQ 160 (254) T ss_pred ccceeEEEeeehhhccCCcccchhhcCceecceEEEEEcCchhhhhcCCCCCccccEEEEcCCCceEEEeccCCCCchhh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cCCceEEEEEEEEEecCCCccCcCCccccccccCccchhhhhhhhhhcchhhcccchhhhhhhhhhhhhhhhccccccCC Q lcl|NC_014260. 176 VGANVQRRITATKFIYNGEELRPELQRNEGINIPEFSELDLMPVKNIDGLADISDIQYEEVNEINAEAAEFVHPYVVING 255 (272) Q Consensus 176 ~GK~yv~~l~ce~F~Ys~E~i~t~~~~iD~i~~~~~~~l~ld~I~~lDG~~d~~idq~~E~~~~~~e~~~~iep~~~i~~ 255 (272) +||+|||+|+|+||+||||+|+||+++||+|+++++.+|||+||++|||++|++++||+|+++|++||++|||||+|||| T Consensus 161 ~GKn~~~~l~ce~F~Ys~E~idt~i~~id~I~~~e~~~ldl~~i~~ldG~~di~~~~~~E~~~~~~e~~~f~e~~~~vn~ 240 (254) T protein:vir:68 161 VGKNAIRKITAGKFIYSGEEINPVLQKNEGINIPEFSDLELNPVRNLDGIHDINIDEYSEVEQINSEASEYVEPYVVVNN 240 (254) T ss_pred hCCceEEEEEEEEEeeCCccccCCCcccCCccCcccCCcchhhHhhhcchhhccccchhhHHHHHhhhhhhcccceeecC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCCCccCcccccccc Q lcl|NC_014260. 256 RGEDAPPTAFDDAFLD 271 (272) Q Consensus 256 ~g~~~~~~pf~~~~~~ 271 (272) +|++ +|||||+||+ T Consensus 241 ~g~~--~~pf~~~~~~ 254 (254) T protein:vir:68 241 RGRQ--NSPFDDGFMN 254 (254) T ss_pred CCCC--CCcccccccC Confidence 9986 6999999999 No 3 >protein:vir:7199 Length: 256 # NCBI annotation: gp14 neck protein # Family: family:all:1104 # MgeID: mge:142 # MgeName: T4 # Cross-refs: genbank:acc:NP_049773;genbank:gi:9632588;genbank:GeneID:1258695 Probab=100.00 E-value=2.1e-144 Score=808.23 Aligned_cols=256 Identities=68% Similarity=1.181 Sum_probs=255.7 Q ss_pred eeecccceeeeecCCcchhhhhhhccccceeeccCcchhHHHHHHHHHHHHHhcCceEEEeeheeccccccccccccccc Q lcl|NC_014260. 16 MATFDSSLFAKLEDNTGYANTNETEIMNPFVNFYKHENTQTLADALVAESIQMRGIELYYIPREYVKPDQLFGEDLQNKF 95 (272) Q Consensus 16 m~~~d~~lfa~le~~~gy~~t~~~~~~NpYfN~~g~~~eQ~L~~~LV~EsIqm~Gvdv~YlpRe~v~~D~v~~Ed~~skF 95 (272) |+|||+|||||||+++||++||+++|||||||++||++||+|+|+||+|||||||+|||||||++|++|+||+|+++||| T Consensus 1 m~~~d~~lfa~l~~~~gy~~~~~~~~lNPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlpRe~v~~D~i~~Ed~~skF 80 (256) T protein:vir:71 1 MATYDKNLFAKLENRTGYSQTNETEILNPYVNFNHYKNSQILADVLVAESIQMRGVECYYVPREYVSPDLIFGEDLKNKF 80 (256) T ss_pred CcccccceeeeecCCcchhhhhhhcccceeeeeeccCchhhHHHHHHHHHHHHcCceEEEechhhccccccccccccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccceeeeeechhhhccCCccchhhhcCceeeeeEEEEEcchhHhHhhcCCCCccccEEEecCCCceEEEEeeccCCchhh Q lcl|NC_014260. 96 TKAWKFAGYLDSFEGYSGDNTYFSKFGMMVNDEVTITINPNLFKHQCNGTEPVSGDLIYFPMDNSLFEINWVQPYDPFYQ 175 (272) Q Consensus 96 ~~A~~ieaYl~n~eGy~g~gd~~SKFG~~~~DE~Tf~IS~~rF~~~v~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ 175 (272) ++||+|||||+||+||+|+++||||||||++|||||+|||+||+++++|+||+|||||||||+|+||||+||||++|||| T Consensus 81 ~ka~~ieaYl~~~egy~G~~d~~SKFG~~~~DEvt~~Is~~rF~~~v~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ 160 (256) T protein:vir:71 81 TKAWKFAAYLNSFEGYEGAKSFFSNFGMQVQDEVTLSINPNLFKHQVNGKEPKEGDLIYFPMDNSLFEINWVEPYDPFYQ 160 (256) T ss_pred ccceeEEEEeehhhccCCccccceecCceecceEEEEEccchhhhhhcCCCCccccEEEEcCCCcEEEEEcccCCCchhh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cCCceEEEEEEEEEecCCCccCcCCccccccccCccchhhhhhhhhhcchhhcccchhhhhhhhhhhhhhhhccccccCC Q lcl|NC_014260. 176 VGANVQRRITATKFIYNGEELRPELQRNEGINIPEFSELDLMPVKNIDGLADISDIQYEEVNEINAEAAEFVHPYVVING 255 (272) Q Consensus 176 ~GK~yv~~l~ce~F~Ys~E~i~t~~~~iD~i~~~~~~~l~ld~I~~lDG~~d~~idq~~E~~~~~~e~~~~iep~~~i~~ 255 (272) +||+|||+|+|+||+||+|+|+||++++|+|+++++++|+|+||++|||++|+++++++|+++|++||++||||++|||| T Consensus 161 ~Gkn~~~~l~ce~F~Ys~E~~~~~l~~~d~i~~~e~~eldl~~i~~ldg~~di~~~~~~e~~~i~~e~~~~ve~~~~in~ 240 (256) T protein:vir:71 161 LGQNAIRKITAGKFIYSGEEINPVLQKNEGINIPEFSELELNAVRNLNGIHDINIDQYAEVDQINSEAKEYVEPYVVVNN 240 (256) T ss_pred hCCCeEEEEEEEEEecCCceecccCCCCCcccCCcccccccccccccCcccccccccccchhhhhhccccccccceeecC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCCCccCcccccccc Q lcl|NC_014260. 256 RGEDAPPTAFDDAFLD 271 (272) Q Consensus 256 ~g~~~~~~pf~~~~~~ 271 (272) ||++++++||||+||+ T Consensus 241 ~G~~~~~~pfd~~~~~ 256 (256) T protein:vir:71 241 RGKSFESSPFDNDFMD 256 (256) T ss_pred CCCCCcCCCccccccC Confidence 9999999999999999 No 4 >protein:vir:103452 Length: 256 # NCBI annotation: head completion # Family: family:all:1104 # MgeID: mge:1542 # MgeName: RB32 # Cross-refs: genbank:acc:YP_803104;genbank:gi:116326384;genbank:GeneID:4405481 Probab=100.00 E-value=7.9e-144 Score=805.12 Aligned_cols=256 Identities=69% Similarity=1.192 Sum_probs=255.7 Q ss_pred eeecccceeeeecCCcchhhhhhhccccceeeccCcchhHHHHHHHHHHHHHhcCceEEEeeheeccccccccccccccc Q lcl|NC_014260. 16 MATFDSSLFAKLEDNTGYANTNETEIMNPFVNFYKHENTQTLADALVAESIQMRGIELYYIPREYVKPDQLFGEDLQNKF 95 (272) Q Consensus 16 m~~~d~~lfa~le~~~gy~~t~~~~~~NpYfN~~g~~~eQ~L~~~LV~EsIqm~Gvdv~YlpRe~v~~D~v~~Ed~~skF 95 (272) |+|||+|||||||+++||++||+++|||||||++||++||+|+|+||+|||||||+|||||||++|++|+||+|+++||| T Consensus 1 m~~~d~~lfa~l~~~~gy~~~~~~~~lNPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~skF 80 (256) T protein:vir:10 1 MATYDKNLFAKLENHTGYSQTNETEILNPYVNFNHYKNSQILADVLVAESIQMRGVECYYVPREYVSPDLIFGEDLKNKF 80 (256) T ss_pred CcccccceeeeecCCcchhhhhhhcccceeeeeeccCchhhHHHHHHHHHHHHcCceEEEechhhccccccccccccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccceeeeeechhhhccCCccchhhhcCceeeeeEEEEEcchhHhHhhcCCCCccccEEEecCCCceEEEEeeccCCchhh Q lcl|NC_014260. 96 TKAWKFAGYLDSFEGYSGDNTYFSKFGMMVNDEVTITINPNLFKHQCNGTEPVSGDLIYFPMDNSLFEINWVQPYDPFYQ 175 (272) Q Consensus 96 ~~A~~ieaYl~n~eGy~g~gd~~SKFG~~~~DE~Tf~IS~~rF~~~v~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ 175 (272) ++||+|||||+||+||+|+++||||||||++|||||+|||+||+++++|+||+|||||||||+|+||||+||||++|||| T Consensus 81 ~ka~~ieaYl~~~egy~G~~d~~SKFG~~~~DEvt~~Is~~rF~~~v~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ 160 (256) T protein:vir:10 81 TKAWKFAAYLNSFEGYEGAKSFFSNFGMQVQDEVTLSINPNLFKHQVNGKEPKEGDLIYFPMDNSLFEINWVEPYDPFYQ 160 (256) T ss_pred ccceeEEEEeehhhccCCccccceecCceecceEEEEEcCchhhhhccCCCCccccEEEEcCCCcEEEEEeccCCCchhh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cCCceEEEEEEEEEecCCCccCcCCccccccccCccchhhhhhhhhhcchhhcccchhhhhhhhhhhhhhhhccccccCC Q lcl|NC_014260. 176 VGANVQRRITATKFIYNGEELRPELQRNEGINIPEFSELDLMPVKNIDGLADISDIQYEEVNEINAEAAEFVHPYVVING 255 (272) Q Consensus 176 ~GK~yv~~l~ce~F~Ys~E~i~t~~~~iD~i~~~~~~~l~ld~I~~lDG~~d~~idq~~E~~~~~~e~~~~iep~~~i~~ 255 (272) +||+|||+|+|+||+||+|+|+||++++|+|+++++++|+++||++|||++|+++++++|++++++||++||+|++|||| T Consensus 161 ~Gkn~~~~l~ce~F~Ys~E~~~~~l~~~d~i~~~~~~eldl~pi~~ldG~~di~~~~~~e~~~~~~e~~~~v~~~~~in~ 240 (256) T protein:vir:10 161 LGQNAIRKITAGKFIYSGEEINPVLQKNEGINIPEFSELELNPVRNLNGIHDINIDQYAEVDQINSEAKEYVEPYVVVNN 240 (256) T ss_pred hCCCeEEEEEEEEEeeCCceecccCCCCccccCCccchhhhccccccccccccCccccccchhhhhccccccccceEecC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCCCccCcccccccc Q lcl|NC_014260. 256 RGEDAPPTAFDDAFLD 271 (272) Q Consensus 256 ~g~~~~~~pf~~~~~~ 271 (272) ||++++++||||+||+ T Consensus 241 ~G~~~~~~pfd~~~~~ 256 (256) T protein:vir:10 241 RGKSFESSPFDNDFMD 256 (256) T ss_pred CCCCCcCCCccccccC Confidence 9999999999999999 No 5 >protein:vir:98258 Length: 248 # NCBI annotation: gp14 head completion # Family: family:all:1104 # MgeID: mge:1667 # MgeName: RB43 # Cross-refs: genbank:acc:YP_239191;genbank:gi:66391666;genbank:GeneID:3416360 Probab=100.00 E-value=1.7e-137 Score=770.36 Aligned_cols=248 Identities=53% Similarity=0.940 Sum_probs=246.9 Q ss_pred eeecccceeeeecCCcchhhhhhhccccceeeccCcchhHHHHHHHHHHHHHhcCceEEEeeheeccccccccccccccc Q lcl|NC_014260. 16 MATFDSSLFAKLEDNTGYANTNETEIMNPFVNFYKHENTQTLADALVAESIQMRGIELYYIPREYVKPDQLFGEDLQNKF 95 (272) Q Consensus 16 m~~~d~~lfa~le~~~gy~~t~~~~~~NpYfN~~g~~~eQ~L~~~LV~EsIqm~Gvdv~YlpRe~v~~D~v~~Ed~~skF 95 (272) |+|||+|||||||+++||++||++++||||||+|+|++||+|+|+||+|||||||+|||||||++|++|+||+|+++||| T Consensus 1 m~~~d~~lfa~l~~~~gy~~t~~~~~lnPYfN~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~skF 80 (248) T protein:vir:98 1 MQNWDESLFAQLSTGEGVDRNLKDQVTNPYVNWYKYNPTQQLHDSLTAESIQMKSPDMYYVRREFVNIDKILGEDRESKF 80 (248) T ss_pred CcccccceeeEecCCcchhhhhhcccccceeeccccCchhHHHHHHHHHHHHHcCceEEEcchhhhcccccccccccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccceeeeeechhhhccCCccchhhhcCceeeeeEEEEEcchhHhHhhcCCCCccccEEEecCCCceEEEEeeccCCchhh Q lcl|NC_014260. 96 TKAWKFAGYLDSFEGYSGDNTYFSKFGMMVNDEVTITINPNLFKHQCNGTEPVSGDLIYFPMDNSLFEINWVQPYDPFYQ 175 (272) Q Consensus 96 ~~A~~ieaYl~n~eGy~g~gd~~SKFG~~~~DE~Tf~IS~~rF~~~v~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ 175 (272) ++||+|||||+||+||+|+|+||||||||++|||||+|||+||+++++++||+|||||||||+|+||||+|||| +|||| T Consensus 81 ~ka~~ieaYl~~~egy~G~~d~~SKFG~~~~DEvt~~Is~~rF~~~~~~~rP~EGDLIYfPm~n~LFEI~~VE~-dPFYQ 159 (248) T protein:vir:98 81 TKSWKIAAYIESYANYEGQRDFFSKFGLSSNDEMTLVLNPRLFAHQTDGGIPVLGDLVYFPMDNSLFEITWVEA-DPFYQ 159 (248) T ss_pred ccceeEEEeeehhhccCCccceeeecCceecceEEEEEccchhhhcCCCCCCccccEEEEcCCCceEEEEecCC-Cchhh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998 69999 Q ss_pred cCCceEEEEEEEEEecCCCccCcCCccccccccCccchhhhhhhhhhcchhhcccchhhhhhhhhhhhhhhhccccccCC Q lcl|NC_014260. 176 VGANVQRRITATKFIYNGEELRPELQRNEGINIPEFSELDLMPVKNIDGLADISDIQYEEVNEINAEAAEFVHPYVVING 255 (272) Q Consensus 176 ~GK~yv~~l~ce~F~Ys~E~i~t~~~~iD~i~~~~~~~l~ld~I~~lDG~~d~~idq~~E~~~~~~e~~~~iep~~~i~~ 255 (272) +||+|||+|+|+||+||+|+|+|+++++|+|+++.+.+|||+||+||||++|++++||+|++++++||++||+||+|||| T Consensus 160 ~Gkn~~~~l~ce~F~Ys~E~~~~~l~~~d~i~~~~~~~iDl~~i~~ldg~~Di~~~~~~e~~~~~~E~~~~~~~~~vin~ 239 (248) T protein:vir:98 160 FGDRPQRKINLAKFIYTGEELAPELQRNEGIHIEPDAELDLEPIRNLDGLADINIEQYEEDKEFEREGDEFIESFDVVNG 239 (248) T ss_pred hCCCeEEEEEEEEeeeCCccccccCCCccccCCCCCcchhHHHhhcCccccccCcccccchhhhhhhhhhhhcccceecC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCCCccCc Q lcl|NC_014260. 256 RGEDAPPTA 264 (272) Q Consensus 256 ~g~~~~~~p 264 (272) +|+|.+..| T Consensus 240 ~g~~~~~~~ 248 (248) T protein:vir:98 240 RGSPFATLP 248 (248) T ss_pred cCCCccCCC Confidence 999999999 No 6 >protein:vir:101154 Length: 252 # NCBI annotation: neck protein # Family: family:all:1104 # MgeID: mge:1582 # MgeName: 44RR2.8t # Cross-refs: genbank:acc:NP_932505;genbank:gi:37651631;genbank:GeneID:2610647 Probab=100.00 E-value=1.8e-136 Score=764.81 Aligned_cols=252 Identities=51% Similarity=0.881 Sum_probs=247.7 Q ss_pred ecccceeeeecCCcchhhhhhhccccceeeccCcchhHHHHHHHHHHHHHhcCceEEEeeheeccccccccccccccccc Q lcl|NC_014260. 18 TFDSSLFAKLEDNTGYANTNETEIMNPFVNFYKHENTQTLADALVAESIQMRGIELYYIPREYVKPDQLFGEDLQNKFTK 97 (272) Q Consensus 18 ~~d~~lfa~le~~~gy~~t~~~~~~NpYfN~~g~~~eQ~L~~~LV~EsIqm~Gvdv~YlpRe~v~~D~v~~Ed~~skF~~ 97 (272) -+|+|||||||+++||++||+++|||||||++||++||+|+|+||+|||||||+|||||||++|++|+||+|+++|||++ T Consensus 1 m~d~~lfa~le~~~gy~~t~~~~~lNPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlpRe~v~~D~i~~Ed~~SkF~k 80 (252) T protein:vir:10 1 MMDKSLFATLENRGGYMRTNEKNILNPYVKFNKHEGTQALQDTLVAESIQMRGIEFYYLEREFTDLDLLFGEDVNSRFEK 80 (252) T ss_pred CCCccceeEecCCcchhhhhhhccccceeeecCccchhHHHHHHHHHHHHHcCceEEEechhhccccccccccccccccc Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeeeeechhhhccCCccchhhhcCceeeeeEEEEEcchhHhHhhcCCCCccccEEEecCCCceEEEEeeccCCchhhcC Q lcl|NC_014260. 98 AWKFAGYLDSFEGYSGDNTYFSKFGMMVNDEVTITINPNLFKHQCNGTEPVSGDLIYFPMDNSLFEINWVQPYDPFYQVG 177 (272) Q Consensus 98 A~~ieaYl~n~eGy~g~gd~~SKFG~~~~DE~Tf~IS~~rF~~~v~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~G 177 (272) ||+|||||+||+||+|+|+||||||||++|||||+|||+||+++++|+||+|||||||||+|+||||+||||++||||+| T Consensus 81 a~~ieaYl~s~egy~G~gd~~SKFG~~~~DEvt~~Is~~rF~~qv~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~G 160 (252) T protein:vir:10 81 AWKFAAWLNSFESYEGQQSFFSKFGHTQNDEIRISINPGLFKYQVNGKEPALGDLIYMPMDNSLFEITWVEPYSPFYQNG 160 (252) T ss_pred ceeEEEeeehhhccCCccceeeecCceecceEEEEEcCchhhhhccCCCCccccEEEEcCCCcEEEEeccCCCCchhhhC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CceEEEEEEEEEecCCCccCcCCccccccccCccchhhhhhhhhhcchhhcccchhhhhhhhhhhhhhhhccccccCCCC Q lcl|NC_014260. 178 ANVQRRITATKFIYNGEELRPELQRNEGINIPEFSELDLMPVKNIDGLADISDIQYEEVNEINAEAAEFVHPYVVINGRG 257 (272) Q Consensus 178 K~yv~~l~ce~F~Ys~E~i~t~~~~iD~i~~~~~~~l~ld~I~~lDG~~d~~idq~~E~~~~~~e~~~~iep~~~i~~~g 257 (272) |+|||+|+|+||+||||+|+|+++++|+|+ +.+++|||+||+|||||+|++++||+|++++++||++|||||+||||+| T Consensus 161 kn~~~~l~ce~F~Ys~E~idt~~~~id~Ie-~~~s~ldl~~i~~ldG~~Di~~~~~~e~~~~~~e~~~~~e~~~~i~~~~ 239 (252) T protein:vir:10 161 KNPIRVIVAQKFIYSGEKITPVVQEKPEIE-DMYNGLDLAPLLNLDGMIDQKIDQFAENIAVQQKVKQYAEPFDPISTNS 239 (252) T ss_pred CCeEEEEEEEEEeeCCceecCcccccCccc-hhhhccchHHHhhcCCeeccccccchhhHHHHHhhhhhhccceeecCCC Confidence 999999999999999999999999999999 7899999999999999999999999999999999999999999999999 Q ss_pred CCCccCccccccc Q lcl|NC_014260. 258 EDAPPTAFDDAFL 270 (272) Q Consensus 258 ~~~~~~pf~~~~~ 270 (272) .+.++|||...=- T Consensus 240 ~~~~~~pf~~~~~ 252 (252) T protein:vir:10 240 FGNFDSPFGKHEA 252 (252) T ss_pred CCCcCCcccccCC Confidence 9999999975322 No 7 >protein:vir:101800 Length: 252 # NCBI annotation: gp14 neck protein # Family: family:all:1104 # MgeID: mge:1580 # MgeName: 31 # Cross-refs: genbank:acc:YP_238877;genbank:gi:66391952;genbank:GeneID:3416627 Probab=100.00 E-value=1.8e-136 Score=764.81 Aligned_cols=252 Identities=51% Similarity=0.881 Sum_probs=247.7 Q ss_pred ecccceeeeecCCcchhhhhhhccccceeeccCcchhHHHHHHHHHHHHHhcCceEEEeeheeccccccccccccccccc Q lcl|NC_014260. 18 TFDSSLFAKLEDNTGYANTNETEIMNPFVNFYKHENTQTLADALVAESIQMRGIELYYIPREYVKPDQLFGEDLQNKFTK 97 (272) Q Consensus 18 ~~d~~lfa~le~~~gy~~t~~~~~~NpYfN~~g~~~eQ~L~~~LV~EsIqm~Gvdv~YlpRe~v~~D~v~~Ed~~skF~~ 97 (272) -+|+|||||||+++||++||+++|||||||++||++||+|+|+||+|||||||+|||||||++|++|+||+|+++|||++ T Consensus 1 m~d~~lfa~le~~~gy~~t~~~~~lNPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlpRe~v~~D~i~~Ed~~SkF~k 80 (252) T protein:vir:10 1 MMDKSLFATLENRGGYMRTNEKNILNPYVKFNKHEGTQALQDTLVAESIQMRGIEFYYLEREFTDLDLLFGEDVNSRFEK 80 (252) T ss_pred CCCccceeEecCCcchhhhhhhccccceeeecCccchhHHHHHHHHHHHHHcCceEEEechhhccccccccccccccccc Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeeeeechhhhccCCccchhhhcCceeeeeEEEEEcchhHhHhhcCCCCccccEEEecCCCceEEEEeeccCCchhhcC Q lcl|NC_014260. 98 AWKFAGYLDSFEGYSGDNTYFSKFGMMVNDEVTITINPNLFKHQCNGTEPVSGDLIYFPMDNSLFEINWVQPYDPFYQVG 177 (272) Q Consensus 98 A~~ieaYl~n~eGy~g~gd~~SKFG~~~~DE~Tf~IS~~rF~~~v~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~G 177 (272) ||+|||||+||+||+|+|+||||||||++|||||+|||+||+++++|+||+|||||||||+|+||||+||||++||||+| T Consensus 81 a~~ieaYl~s~egy~G~gd~~SKFG~~~~DEvt~~Is~~rF~~qv~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~G 160 (252) T protein:vir:10 81 AWKFAAWLNSFESYEGQQSFFSKFGHTQNDEIRISINPGLFKYQVNGKEPALGDLIYMPMDNSLFEITWVEPYSPFYQNG 160 (252) T ss_pred ceeEEEeeehhhccCCccceeeecCceecceEEEEEcCchhhhhccCCCCccccEEEEcCCCcEEEEeccCCCCchhhhC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CceEEEEEEEEEecCCCccCcCCccccccccCccchhhhhhhhhhcchhhcccchhhhhhhhhhhhhhhhccccccCCCC Q lcl|NC_014260. 178 ANVQRRITATKFIYNGEELRPELQRNEGINIPEFSELDLMPVKNIDGLADISDIQYEEVNEINAEAAEFVHPYVVINGRG 257 (272) Q Consensus 178 K~yv~~l~ce~F~Ys~E~i~t~~~~iD~i~~~~~~~l~ld~I~~lDG~~d~~idq~~E~~~~~~e~~~~iep~~~i~~~g 257 (272) |+|||+|+|+||+||||+|+|+++++|+|+ +.+++|||+||+|||||+|++++||+|++++++||++|||||+||||+| T Consensus 161 kn~~~~l~ce~F~Ys~E~idt~~~~id~Ie-~~~s~ldl~~i~~ldG~~Di~~~~~~e~~~~~~e~~~~~e~~~~i~~~~ 239 (252) T protein:vir:10 161 KNPIRVIVAQKFIYSGEKITPVVQEKPEIE-DMYNGLDLAPLLNLDGMIDQKIDQFAENIAVQQKVKQYAEPFDPISTNS 239 (252) T ss_pred CCeEEEEEEEEEeeCCceecCcccccCccc-hhhhccchHHHhhcCCeeccccccchhhHHHHHhhhhhhccceeecCCC Confidence 999999999999999999999999999999 7899999999999999999999999999999999999999999999999 Q ss_pred CCCccCccccccc Q lcl|NC_014260. 258 EDAPPTAFDDAFL 270 (272) Q Consensus 258 ~~~~~~pf~~~~~ 270 (272) .+.++|||...=- T Consensus 240 ~~~~~~pf~~~~~ 252 (252) T protein:vir:10 240 FGNFDSPFGKHEA 252 (252) T ss_pred CCCcCCcccccCC Confidence 9999999975322 No 8 >protein:vir:80995 Length: 246 # NCBI annotation: gp14 neck protein # Family: family:all:1104 # MgeID: mge:1888 # MgeName: Phi1 # Cross-refs: genbank:acc:YP_001469495;genbank:gi:157311452;genbank:GeneID:5602161 Probab=100.00 E-value=2.6e-136 Score=763.90 Aligned_cols=246 Identities=62% Similarity=1.108 Sum_probs=243.3 Q ss_pred ecccceeeeecCCcchhhhhhhccccceeeccCcchhHHHHHHHHHHHHHhcCceEEEeeheeccccccccccccccccc Q lcl|NC_014260. 18 TFDSSLFAKLEDNTGYANTNETEIMNPFVNFYKHENTQTLADALVAESIQMRGIELYYIPREYVKPDQLFGEDLQNKFTK 97 (272) Q Consensus 18 ~~d~~lfa~le~~~gy~~t~~~~~~NpYfN~~g~~~eQ~L~~~LV~EsIqm~Gvdv~YlpRe~v~~D~v~~Ed~~skF~~ 97 (272) -||+|||||||+|+||++|++++|||||||++||++||+|+|+||+|||||||+|||||||++|++|+||+|+++|||++ T Consensus 1 ~~~~~lfa~l~~~~gy~~~~~~~~lNPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~skF~k 80 (246) T protein:vir:80 1 MFDSTLFARLESQKDYENTRQTEILNPYVNFNSHTNTQTLADIMVAESIQMRGVEMYYIPREFVKPDMIFGEDVQSKFTK 80 (246) T ss_pred CCcccceeeecCCcchhhhcccccccceeeeCCCCchhhHHHHHHHHHHHHcCceEEEechhhhcccccccccccccccc Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeeeeechhhhccCCccchhhhcCceeeeeEEEEEcchhHhHhhcCCCCccccEEEecCCCceEEEEeeccCCchhhcC Q lcl|NC_014260. 98 AWKFAGYLDSFEGYSGDNTYFSKFGMMVNDEVTITINPNLFKHQCNGTEPVSGDLIYFPMDNSLFEINWVQPYDPFYQVG 177 (272) Q Consensus 98 A~~ieaYl~n~eGy~g~gd~~SKFG~~~~DE~Tf~IS~~rF~~~v~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~G 177 (272) ||+|||||+||+||+|+|+||||||||++|||||+|||+||+++++++||+|||||||||+|+||||+||||++||||+| T Consensus 81 a~~ieaYl~s~egy~G~gd~~SKFG~~v~DEvt~~Is~~rF~~~~~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~G 160 (246) T protein:vir:80 81 AWKFAAYINSFDGYEGAGNFFQSFGYTANDELTITINPNLFKHQVDNKEPKSGDLFYIPMSNDLFEISYVEPYQPFFQAG 160 (246) T ss_pred ceeEEEeeehhhccCCccceeeecCceecceEEEEEccchHhhhhCCCCCccccEEEEcCCCceEEEecccCCCchhhhC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CceEEEEEEEEEecCCCccCcCCccccccccCccchhhhhhhhhhcchhhcccchhhhhhhhhhhhhhhhccccccCCCC Q lcl|NC_014260. 178 ANVQRRITATKFIYNGEELRPELQRNEGINIPEFSELDLMPVKNIDGLADISDIQYEEVNEINAEAAEFVHPYVVINGRG 257 (272) Q Consensus 178 K~yv~~l~ce~F~Ys~E~i~t~~~~iD~i~~~~~~~l~ld~I~~lDG~~d~~idq~~E~~~~~~e~~~~iep~~~i~~~g 257 (272) |||||+|+|+||+||||+|+||++++|+|+++++.+|||+||+||||++|++++||+|++++++||++|||||+|||||| T Consensus 161 Kn~v~~l~ce~F~Ys~E~~~t~i~~~d~I~~de~~~ldl~~i~nldg~~Din~~~~~e~~~~~~e~~~f~~~~~~~~~~g 240 (246) T protein:vir:80 161 KNAMRKIIAEKFVYSGEELRPELQRNEGINVDEFADLDLAPITNLDGLTDINLDQYKEDKQFRSEGQDFIDPFDPINGKG 240 (246) T ss_pred CCeEEEEEEEEEeecCcccccCCCCccccCCCCcccccHHHHhhcccccccCcccchhhhhhhcchhhhcccceeecCCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCccCccccc Q lcl|NC_014260. 258 EDAPPTAFDDA 268 (272) Q Consensus 258 ~~~~~~pf~~~ 268 (272) |||+|- T Consensus 241 -----spf~~~ 246 (246) T protein:vir:80 241 -----SPFADF 246 (246) T ss_pred -----CccccC Confidence 777764 No 9 >protein:vir:6590 Length: 246 # NCBI annotation: neck protein # Family: family:all:1104 # MgeID: mge:139 # MgeName: RB49 # Cross-refs: genbank:acc:NP_891721;genbank:gi:33620667;genbank:GeneID:1725307 Probab=100.00 E-value=4e-136 Score=762.86 Aligned_cols=246 Identities=61% Similarity=1.101 Sum_probs=243.3 Q ss_pred ecccceeeeecCCcchhhhhhhccccceeeccCcchhHHHHHHHHHHHHHhcCceEEEeeheeccccccccccccccccc Q lcl|NC_014260. 18 TFDSSLFAKLEDNTGYANTNETEIMNPFVNFYKHENTQTLADALVAESIQMRGIELYYIPREYVKPDQLFGEDLQNKFTK 97 (272) Q Consensus 18 ~~d~~lfa~le~~~gy~~t~~~~~~NpYfN~~g~~~eQ~L~~~LV~EsIqm~Gvdv~YlpRe~v~~D~v~~Ed~~skF~~ 97 (272) -||+|||||||+|+||++|++++|||||||+|||.+||+|+|+||+|||||||+|||||||++|++|+||+|+++|||++ T Consensus 1 ~~~~~lfa~l~~~~gy~~~~~~~~lNPYfN~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~skF~k 80 (246) T protein:vir:65 1 MFNNTLFARLESQKDYENTRQTEILNPYVNFHKYTNTQTLADVMVAEAIQMRGVELYYIPREFVKPDMIFGEDVQSKFTK 80 (246) T ss_pred CCcccceeeecCCcchhhhcccccccceeecCCCcchhhHHHHHHHHHHHHcCceEEEechhhccccccccccccccccc Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeeeeechhhhccCCccchhhhcCceeeeeEEEEEcchhHhHhhcCCCCccccEEEecCCCceEEEEeeccCCchhhcC Q lcl|NC_014260. 98 AWKFAGYLDSFEGYSGDNTYFSKFGMMVNDEVTITINPNLFKHQCNGTEPVSGDLIYFPMDNSLFEINWVQPYDPFYQVG 177 (272) Q Consensus 98 A~~ieaYl~n~eGy~g~gd~~SKFG~~~~DE~Tf~IS~~rF~~~v~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~G 177 (272) ||+|||||+||+||+|+|+||||||||++|||||+|||+||+++++++||+|||||||||+|+||||+||||++||||+| T Consensus 81 a~~ieaYl~~~egy~G~~d~~SKFG~~v~DEvt~~Is~~rF~~~~~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~G 160 (246) T protein:vir:65 81 AWKFAAYINSFDGYEGAGNFFSSFGYQANDELTFTVNPNLFKHQVDDQEPKSGDLIYIPMSNDLFEINYVEPYQPFFQAG 160 (246) T ss_pred ceeEEEeeehhhccCCccceeeecCceecceEEEEEcCchhhhhcCCCCCccccEEEEcCCCcEEEEecccCCCchhhhC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CceEEEEEEEEEecCCCccCcCCccccccccCccchhhhhhhhhhcchhhcccchhhhhhhhhhhhhhhhccccccCCCC Q lcl|NC_014260. 178 ANVQRRITATKFIYNGEELRPELQRNEGINIPEFSELDLMPVKNIDGLADISDIQYEEVNEINAEAAEFVHPYVVINGRG 257 (272) Q Consensus 178 K~yv~~l~ce~F~Ys~E~i~t~~~~iD~i~~~~~~~l~ld~I~~lDG~~d~~idq~~E~~~~~~e~~~~iep~~~i~~~g 257 (272) |||||+|+|+||+||||+|+||++++|+|+++++.+|||+||+||||++|++++||+|++++++||++|||||+|||||| T Consensus 161 Kn~v~~l~ce~F~Ys~E~~~~~i~~~d~I~~de~~~ldl~~i~~ldg~~Din~~~~~e~~~~~~e~~~f~~~~~~~~~~g 240 (246) T protein:vir:65 161 KNAMRKIIAEKFVYSGEELRPELQRNEGINVDEFADLDLAPITNLDGLTDINLDQYKEDKQFRSEGQDFIDPFDPINGKG 240 (246) T ss_pred CCeEEEEEEEEEeecCcccccCCCCccccCCCCcccccHHHHhhcccccccCccchhhhhhhhcchhhhcccceeecCCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCccCccccc Q lcl|NC_014260. 258 EDAPPTAFDDA 268 (272) Q Consensus 258 ~~~~~~pf~~~ 268 (272) |||+|- T Consensus 241 -----spf~~~ 246 (246) T protein:vir:65 241 -----SPFADF 246 (246) T ss_pred -----CccccC Confidence 777764 No 10 >protein:vir:106285 Length: 262 # NCBI annotation: gp14 neck protein # Family: family:all:1104 # MgeID: mge:1474 # MgeName: Aeh1 # Cross-refs: genbank:acc:NP_944101;genbank:gi:38640145;genbank:GeneID:2658033 Probab=100.00 E-value=8.1e-135 Score=755.72 Aligned_cols=253 Identities=46% Similarity=0.785 Sum_probs=243.1 Q ss_pred eeecccceeeeecCCcchhhhhhhccccceeeccCcchhHHHHHHHHHHHHHhcCceEEEeeheeccccccccccccccc Q lcl|NC_014260. 16 MATFDSSLFAKLEDNTGYANTNETEIMNPFVNFYKHENTQTLADALVAESIQMRGIELYYIPREYVKPDQLFGEDLQNKF 95 (272) Q Consensus 16 m~~~d~~lfa~le~~~gy~~t~~~~~~NpYfN~~g~~~eQ~L~~~LV~EsIqm~Gvdv~YlpRe~v~~D~v~~Ed~~skF 95 (272) |+|||+|||||||+|+||++|++++|||||||+++|++||+|+|+||+|||||||+|||||||++|++|+||+|+++||| T Consensus 1 m~~~d~~lfa~le~~~gy~~~~~~~vlNPYfN~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlpRe~v~~D~i~gEd~~SkF 80 (262) T protein:vir:10 1 MFARNQSMFAQLETGAGYNKTYQTNVLNPYVNKHEYEPTLSLHEMLVAESIQMTGVEMYYIRREFVNFDRIFGEDMQSKF 80 (262) T ss_pred CcccccceeeEecCCCcccCcchhccccceeccCCcCchhhHHHHHHHHHHHHcCceEEEcchhhhcccccccccccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccceeeeeechhhhccCCccchhhhcCceeeeeEEEEEcchhHhHhhcCCCCccccEEEecCCCceEEEEeeccCCchhh Q lcl|NC_014260. 96 TKAWKFAGYLDSFEGYSGDNTYFSKFGMMVNDEVTITINPNLFKHQCNGTEPVSGDLIYFPMDNSLFEINWVQPYDPFYQ 175 (272) Q Consensus 96 ~~A~~ieaYl~n~eGy~g~gd~~SKFG~~~~DE~Tf~IS~~rF~~~v~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ 175 (272) ++||+|||||+||+||+|+|+||||||||++|||||+|||+||+++++|+||+|||||||||+|+||||+||||++|||| T Consensus 81 ~ka~~ieaYl~s~egy~G~~d~~SKFG~~v~DEvt~~Is~~rF~~~~~~~rP~EGDLIYfPl~nsLFEI~~VE~~~PFYQ 160 (262) T protein:vir:10 81 KKTYKVAMYLESFDEYSGQRDFFSKFGMQVNDEITMSVSPKLFETQADGDRVKEGDLIYFPLNNSLFEVTWVEPSSPVVK 160 (262) T ss_pred ccceeEEEeeehhhccCCccceeeecCceecceEEEEEccchhhhhhcCCCCccccEEEEcCCCceEEEeeccCCCchhh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cCCceEEEEEEEEEecCCCccCcCCccccccccCccchhhhhhhhhhcchhhcccchhhhhhhhhhhhhhhhccccccCC Q lcl|NC_014260. 176 VGANVQRRITATKFIYNGEELRPELQRNEGINIPEFSELDLMPVKNIDGLADISDIQYEEVNEINAEAAEFVHPYVVING 255 (272) Q Consensus 176 ~GK~yv~~l~ce~F~Ys~E~i~t~~~~iD~i~~~~~~~l~ld~I~~lDG~~d~~idq~~E~~~~~~e~~~~iep~~~i~~ 255 (272) +||+|||+|+|+||+||||+|+|++++||+|... ..+|+||++|||++|++++|++|++++++||++||+||++||| T Consensus 161 ~Gkn~~~~l~ce~F~Ys~E~i~~~i~~id~i~~e---~~~l~~i~~lDg~~di~~~q~~e~~~~~~e~~~fv~~~d~v~~ 237 (262) T protein:vir:10 161 REQLAKYKVTAQKFIYSGEEIKPEFDPNRYVLGE---DDPLSQIKALDGRADISLDEFAEDDAFNEEAEDFVVEFDNIIG 237 (262) T ss_pred hCCceEEEEEEEEEeeCCccccccCccccccccc---cccccccccccceeecccccccchhHHhhhhhhhcchhcccCC Confidence 9999999999999999999999999999999632 2249999999999999999999999999999999999999999 Q ss_pred CCCCC---------ccCccccccccC Q lcl|NC_014260. 256 RGEDA---------PPTAFDDAFLDD 272 (272) Q Consensus 256 ~g~~~---------~~~pf~~~~~~~ 272 (272) +|||+ .++||||- -|= T Consensus 238 ~gsp~~~~~~~~~~~~~~fdd~-~~~ 262 (262) T protein:vir:10 238 NGTPIAEHKPTKPAPVSAFDDL-ESF 262 (262) T ss_pred CCCcccccCCCCCCCCChhhhh-hcC Confidence 99774 57899872 111 No 11 >protein:vir:100535 Length: 253 # NCBI annotation: gp14 head completion protein # Family: family:all:1104 # MgeID: mge:1488 # MgeName: 25 # Cross-refs: genbank:acc:YP_656376;genbank:gi:109290127;genbank:GeneID:4156513 Probab=100.00 E-value=5e-134 Score=751.40 Aligned_cols=253 Identities=51% Similarity=0.884 Sum_probs=247.4 Q ss_pred ecccceeeeecCCcchhhhhhhccccceeeccCcchhHHHHHHHHHHHHHhcCceEEEeeheeccccccccccccccccc Q lcl|NC_014260. 18 TFDSSLFAKLEDNTGYANTNETEIMNPFVNFYKHENTQTLADALVAESIQMRGIELYYIPREYVKPDQLFGEDLQNKFTK 97 (272) Q Consensus 18 ~~d~~lfa~le~~~gy~~t~~~~~~NpYfN~~g~~~eQ~L~~~LV~EsIqm~Gvdv~YlpRe~v~~D~v~~Ed~~skF~~ 97 (272) -+|+|||||||+++||++||+++|||||||++||++||+|+|+||+|||||||+|||||||++|++|+||+|+++|||++ T Consensus 1 ~~~~~lfa~l~~~~gy~~t~~~~~lNPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~skF~k 80 (253) T protein:vir:10 1 MMDKSLFATLENRSGYQQTNEQNILNPYVKFNRYEGSQALHDTLVAESIQMRGLEFYYLEREYTNLDLLFGEDPNSRFEK 80 (253) T ss_pred CcCccceeEecCCcchhhhhhhccccceeeccccCchhHHHHHHHHHHHHHcCceEEEcchhhccccCcccccccccccc Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeeeeechhhhccCCccchhhhcCceeeeeEEEEEcchhHhHhhcCCCCccccEEEecCCCceEEEEeeccCCchhhcC Q lcl|NC_014260. 98 AWKFAGYLDSFEGYSGDNTYFSKFGMMVNDEVTITINPNLFKHQCNGTEPVSGDLIYFPMDNSLFEINWVQPYDPFYQVG 177 (272) Q Consensus 98 A~~ieaYl~n~eGy~g~gd~~SKFG~~~~DE~Tf~IS~~rF~~~v~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~G 177 (272) ||+|||||+||+||+|+|+||||||||++|||||+|||+||+++++|+||+|||||||||+|+||||+||||++||||+| T Consensus 81 a~~ieaYl~~~egy~G~gd~~SKFG~~v~DEvt~~Is~~rF~~~v~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~G 160 (253) T protein:vir:10 81 AWKFAAWLNSFESYEGQQSFFSKFGHQQNDEVRISINPGLFKYQVNGKEPKLGDLIYMPMDNSLFEITWVEPYTPFYQMG 160 (253) T ss_pred ceeEEEeeehhhccCCccceeeecCceecceEEEEEcCchhhhhccCCCCccccEEEEcCCCcEEEEeccCCCCchhhhC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CceEEEEEEEEEecCCCccCcCCccccccccCccchhhhhhhhhhcchhhcccchhhhhhhhhhhhhhhhccccccCCCC Q lcl|NC_014260. 178 ANVQRRITATKFIYNGEELRPELQRNEGINIPEFSELDLMPVKNIDGLADISDIQYEEVNEINAEAAEFVHPYVVINGRG 257 (272) Q Consensus 178 K~yv~~l~ce~F~Ys~E~i~t~~~~iD~i~~~~~~~l~ld~I~~lDG~~d~~idq~~E~~~~~~e~~~~iep~~~i~~~g 257 (272) |+|||+|+|+||+||+|+|+||+++||+|+ ++++.||++||++|||++|++++|++|++++++||++|||||+||+|+| T Consensus 161 kn~~~~l~ce~F~Ys~E~i~tgi~~id~Ie-~~~~~ldl~~i~~l~G~~Di~~~~~~e~~~~~~e~~~~v~~~~~~~~~~ 239 (253) T protein:vir:10 161 KNPIRVIVAQKFIYSGEKLAPQFQEKPEIE-DQYNGLDLEPILNLDGFIDQKINEFGENVQAQNEARPFVEPFDPISTNP 239 (253) T ss_pred CceEEEEEEEEEecCCccccccCccccccc-chhhhhhhhhhhcCCCccccccccccccchhhhccccccccceeccCCC Confidence 999999999999999999999999999999 6899999999999999999999999999999999999999999999999 Q ss_pred CCCccCcccccccc Q lcl|NC_014260. 258 EDAPPTAFDDAFLD 271 (272) Q Consensus 258 ~~~~~~pf~~~~~~ 271 (272) +..++|||...=-. T Consensus 240 ~~g~~spf~~~~~~ 253 (253) T protein:vir:10 240 VNSFNSPFGRHEGQ 253 (253) T ss_pred CccccCcccccCCC Confidence 99999999753222 No 12 >protein:vir:5658 Length: 278 # NCBI annotation: gp14 # Family: family:all:1104 # MgeID: mge:119 # MgeName: KVP40 # Cross-refs: genbank:acc:NP_899597;genbank:gi:34419584;genbank:GeneID:2545699 Probab=100.00 E-value=6.4e-129 Score=723.37 Aligned_cols=257 Identities=40% Similarity=0.715 Sum_probs=239.9 Q ss_pred eeeccc---ceeeeecCCcchhhhhhhccccceeeccCcchhHHHHHHHHHHHHHhcCceEEEeeheecccccccccccc Q lcl|NC_014260. 16 MATFDS---SLFAKLEDNTGYANTNETEIMNPFVNFYKHENTQTLADALVAESIQMRGIELYYIPREYVKPDQLFGEDLQ 92 (272) Q Consensus 16 m~~~d~---~lfa~le~~~gy~~t~~~~~~NpYfN~~g~~~eQ~L~~~LV~EsIqm~Gvdv~YlpRe~v~~D~v~~Ed~~ 92 (272) |+|||+ |||||||+++||++|++++|||||||++||++||+|+|+||+|||||||+|||||||++|++|+||+|+++ T Consensus 1 m~~~d~~~~~lfa~l~~~~gy~~~~~~~~~NpYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~ 80 (278) T protein:vir:56 1 MGAYDTNTGGMFAKLESQKGYDQIYNNHLVNPYFNWVNHTNEQNLTDMLVAESIINRGVECVYLRREMEKVDLVFGEDPM 80 (278) T ss_pred CccccccCceEEEEecCCcccchhcccccccceeeccCCCchhHHHHHHHHHHHHHcCceEEEcchhhhccccccccccc Confidence 999999 79999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cccccceeeeeechhhhccCCccchhhhcCceeeeeEEEEEcchhHhHhhcCCCCccccEEEecCCCceEEEEeeccCCc Q lcl|NC_014260. 93 NKFTKAWKFAGYLDSFEGYSGDNTYFSKFGMMVNDEVTITINPNLFKHQCNGTEPVSGDLIYFPMDNSLFEINWVQPYDP 172 (272) Q Consensus 93 skF~~A~~ieaYl~n~eGy~g~gd~~SKFG~~~~DE~Tf~IS~~rF~~~v~~~rP~EGDLIYfPm~n~LFEI~~VE~~~P 172 (272) |||++||+|||||+||+||+|+|+||||||||++|||||+|||+||+++++++||+|||||||||+|+||||+||||++| T Consensus 81 skF~ka~~ieaYl~~~egy~G~~d~~SKFG~~~~DEvt~~Is~~rF~~~~~~~rP~EGDLIYfPm~n~LFEI~~VE~~~P 160 (278) T protein:vir:56 81 SKFTQNFRMSLYVESFEGWDGDGDWYSKFGFQVNDEMNVCINPKLFAQQGDGKQPLMGDLIYFPLANSLFEISWIEREDP 160 (278) T ss_pred cccccceeEEEEeehhhccCCCceeeeecCceecceEEEEEccchhhhcCCCCCCccccEEEEcCCCcEEEEEccCCCCc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hhhcCCceEEEEEEEEEecCCCccCcC---CccccccccCccch-----hhhhhhhhhcchhhcccchhhhhhhhhhhhh Q lcl|NC_014260. 173 FYQVGANVQRRITATKFIYNGEELRPE---LQRNEGINIPEFSE-----LDLMPVKNIDGLADISDIQYEEVNEINAEAA 244 (272) Q Consensus 173 FYQ~GK~yv~~l~ce~F~Ys~E~i~t~---~~~iD~i~~~~~~~-----l~ld~I~~lDG~~d~~idq~~E~~~~~~e~~ 244 (272) |||+||+|||+|+|+||+||+|+|++| +++.+.++++++++ ||++||++|||++|+++++++|.+++++||+ T Consensus 161 FYQ~Gk~~~~~l~ce~F~Ys~E~~dtg~pe~~~d~i~~i~ef~e~~~~~ld~~~~~~l~G~~di~~~~~~e~~~~~~e~~ 240 (278) T protein:vir:56 161 WYMNGVLPMRKMKMTKFVYSGEEINLEKPEAVIDSIDDILNFGEDTDEMIDIDKINALDGRWDIGIEQGAEITQIEDEVD 240 (278) T ss_pred hhhhCCceEEEEEEEEeeecCceecccCCccccccccchhhcccchhhcccccccccccchhcccchhhhhhhhhhhccc Confidence 999999999999999999999999866 44555556678887 9999999999999999999999999999999 Q ss_pred hhhccccccCCCCCCCccCccccccccC Q lcl|NC_014260. 245 EFVHPYVVINGRGEDAPPTAFDDAFLDD 272 (272) Q Consensus 245 ~~iep~~~i~~~g~~~~~~pf~~~~~~~ 272 (272) +|++|+.|++++|++.+..|.....=.. T Consensus 241 ~f~~~~~v~~~~~~~~~t~~~n~~~g~~ 268 (278) T protein:vir:56 241 KFYESEQVVPSGSDVQPTDPRNATIGFN 268 (278) T ss_pred eeeecCceecCCCCccccCcccccCCCc Confidence 9999999999887655433332222100 No 13 >protein:vir:104476 Length: 308 # NCBI annotation: gp14 # Family: family:all:1104 # MgeID: mge:1548 # MgeName: P-SSM4 # Cross-refs: genbank:acc:YP_214650;genbank:gi:61806291;genbank:GeneID:3294531 Probab=100.00 E-value=6.8e-113 Score=635.53 Aligned_cols=247 Identities=27% Similarity=0.497 Sum_probs=219.7 Q ss_pred Cccc-cccccceeeeeeeecccceeeeecCCcchhhhhhhccccceeeccCcchhHHHHHHHHHHHHHhcCceEEEeehe Q lcl|NC_014260. 1 MRFT-RPTNTYFNWIIMATFDSSLFAKLEDNTGYANTNETEIMNPFVNFYKHENTQTLADALVAESIQMRGIELYYIPRE 79 (272) Q Consensus 1 ~~~~-~~~~~~~~~~~m~~~d~~lfa~le~~~gy~~t~~~~~~NpYfN~~g~~~eQ~L~~~LV~EsIqm~Gvdv~YlpRe 79 (272) |.+. .|+|.|| +|.| .+|||||+|||++||+|+|+||+|||||||+|||||||+ T Consensus 1 ~~~~~~~~~py~------------------~~~~-------~~~~~~n~~~~~~eQ~L~e~LV~EsIqm~G~dvyYlpRe 55 (308) T protein:vir:10 1 MAIQNSPAQDYV------------------QSDY-------SNAGRLKANASSQEQKFIENLVVESIEIYGQDIYYVPRT 55 (308) T ss_pred CccccCCCCCcc------------------cccc-------cccceEEEeccCchhHHHHHHHHHHHHhcCceEEEechh Confidence 3332 3444443 1122 236778999999999999999999999999999999999 Q ss_pred ecccccccccccccccccceeeeeechhhhccCCccchhhhcCceeeeeEEEEEcchhHhHhhcCC-------CCccccE Q lcl|NC_014260. 80 YVKPDQLFGEDLQNKFTKAWKFAGYLDSFEGYSGDNTYFSKFGMMVNDEVTITINPNLFKHQCNGT-------EPVSGDL 152 (272) Q Consensus 80 ~v~~D~v~~Ed~~skF~~A~~ieaYl~n~eGy~g~gd~~SKFG~~~~DE~Tf~IS~~rF~~~v~~~-------rP~EGDL 152 (272) +|++|+||+|+++|||++||+|||||+||+||+|+|+||||||||++|||||+|||+||++++++. ||+|||| T Consensus 56 ~v~~D~i~~Ed~~skF~~a~~ieaY~~~~egy~g~~~~~SKFG~~~~DE~t~~is~~rF~~~v~~~~~~~~~~rP~EGDL 135 (308) T protein:vir:10 56 IVNRDSVFEEDSDGKFESAKAIRAYVNNVEGWEGQGELLSKFGIRIEDKTTFIFSREKFKEHVDDSVTLNVEGRPNEGDL 135 (308) T ss_pred hcccccccccccccccccceeEEEEeechhccCCCcceeeecCceecceEEEEEccchhhhhcCCccccccCCCCccccE Confidence 999999999999999999999999999999999999999999999999999999999999999984 9999999 Q ss_pred EEecCCCceEEEEeeccCCchhhcCCceEEEEEEEEEecCCCccCcCCccccccccCccchhhhhhhhhhcchhhcccch Q lcl|NC_014260. 153 IYFPMDNSLFEINWVQPYDPFYQVGANVQRRITATKFIYNGEELRPELQRNEGINIPEFSELDLMPVKNIDGLADISDIQ 232 (272) Q Consensus 153 IYfPm~n~LFEI~~VE~~~PFYQ~GK~yv~~l~ce~F~Ys~E~i~t~~~~iD~i~~~~~~~l~ld~I~~lDG~~d~~idq 232 (272) |||||+|+|||||||||++||||+||+|||+|+|+||+||+|+|+|||+++|+|++++++.|+|+||++++|.+++++++ T Consensus 136 IYfPl~~~lFEI~~VE~~~PFyQ~Gk~~~~~l~ce~F~Ys~E~~~~~i~~iD~i~~~~~~~LdL~pIs~l~G~fdInE~v 215 (308) T protein:vir:10 136 IWFPITKHLFEIKFVEVERPFYQLGRNYVWECQCELFEYSDEEINTGITELDAIETAFANAITVGLVAGGTGTFTVGETI 215 (308) T ss_pred EEecCCCceEEEEcccCCCchhhhCCceEEEEEEEEEeeCCcccccCCccccccccccccceeeeeeccCCcccccccee Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hhhhhhhhhhhhhh---hccccccCCCCCCCc--------------cCcccc-ccccC Q lcl|NC_014260. 233 YEEVNEINAEAAEF---VHPYVVINGRGEDAP--------------PTAFDD-AFLDD 272 (272) Q Consensus 233 ~~E~~~~~~e~~~~---iep~~~i~~~g~~~~--------------~~pf~~-~~~~~ 272 (272) +++.++++.||+.| ++|..|+|++|+... ..-++. +.+++ T Consensus 216 ~gest~itAEv~~wds~v~~ItV~N~gGsftspptItGsts~a~~t~~s~~~~~nt~~ 273 (308) T protein:vir:10 216 TGGTSNVTAEVKSFDASTRTLIVINRSGTFTVPETVTGGTSSASWTTATYNTIDNQNL 273 (308) T ss_pred cccccceEEEEEEecCCceEEEEEeCCCceeeCcEEEeccCCceeEEEeeeecccCCC Confidence 99999999999988 778999988886431 001111 11111 No 14 >protein:vir:106986 Length: 292 # NCBI annotation: neck protein gp14 # Family: family:all:1104 # MgeID: mge:1459 # MgeName: S-PM2 # Cross-refs: genbank:acc:YP_195128;genbank:gi:58532905;uniprot:Q5GQV9;genbank:GeneID:3260483 Probab=100.00 E-value=4e-108 Score=609.35 Aligned_cols=232 Identities=25% Similarity=0.467 Sum_probs=215.8 Q ss_pred ccccceee--ccCcchhHHHHHHHHHHHHHhcCceEEEeeheecccccccccccccccccceeeeeechhhhccCCccch Q lcl|NC_014260. 40 EIMNPFVN--FYKHENTQTLADALVAESIQMRGIELYYIPREYVKPDQLFGEDLQNKFTKAWKFAGYLDSFEGYSGDNTY 117 (272) Q Consensus 40 ~~~NpYfN--~~g~~~eQ~L~~~LV~EsIqm~Gvdv~YlpRe~v~~D~v~~Ed~~skF~~A~~ieaYl~n~eGy~g~gd~ 117 (272) --|||||| +|||++||+|+|+||+|||||||+|||||||++|+ |+||+|+++|||++||+|||||+||+||+|+|+| T Consensus 1 m~~npyfn~~~~~~~~eQ~L~~~LV~Esiq~~G~dvyYlpRe~~~-d~~~~E~~~skF~~a~~ieaY~~~~eg~~g~~~~ 79 (292) T protein:vir:10 1 MPTSPYFPSYYSGYSGEQNLVQDLVDEQIKLFGTDIYYLPRTILR-DNTLDDVIYNKFERQFQVEMLLQNVEGFGSPSEF 79 (292) T ss_pred CCcCccccccccCcCchhHHHHHHHHHHHHhcCceEEEechhhhc-ccccccccccccccceeEEEEeechhccCCCcce Confidence 56999999 69999999999999999999999999999999999 9999999999999999999999999999999999 Q ss_pred hhhcCceeeeeEEEEEcchhHhHhhcC------CCCccccEEEecCCCceEEEEeeccCCchhhcCCceEEEEEEEEEec Q lcl|NC_014260. 118 FSKFGMMVNDEVTITINPNLFKHQCNG------TEPVSGDLIYFPMDNSLFEINWVQPYDPFYQVGANVQRRITATKFIY 191 (272) Q Consensus 118 ~SKFG~~~~DE~Tf~IS~~rF~~~v~~------~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~GK~yv~~l~ce~F~Y 191 (272) |||||||++|||||+|||+||++++++ +||+|||||||||+|+|||||||||++||||+||+|||+|+|+||+| T Consensus 80 ~sKFG~~~~De~t~~is~~~f~~~~~~~~~~~~~~P~eGDLIYfPl~~~lFEI~~ve~~~PfyQ~gk~~~~~l~~~~F~Y 159 (292) T protein:vir:10 80 ISKFGLRITDEVRFIVSQRRWDEEAVNYDLNVNGRPNEGDLLYFPLTQDIYEIKFVEREDPFYQLGKNYFYIMTAEIYEY 159 (292) T ss_pred eeecCceecceEEEEEccchhhhhcCcccccccCCCccccEEEEcCCCcEEEEEcccCCCchhhhCCceEEEEEEEEEee Confidence 999999999999999999999999998 89999999999999999999999999999999999999999999999 Q ss_pred CCCccCcCCccccccccCccchhhhhhhhhhcchhhcccchhhhhhhhhhhhhhhhc---cccccCCCCCCCccCcccc- Q lcl|NC_014260. 192 NGEELRPELQRNEGINIPEFSELDLMPVKNIDGLADISDIQYEEVNEINAEAAEFVH---PYVVINGRGEDAPPTAFDD- 267 (272) Q Consensus 192 s~E~i~t~~~~iD~i~~~~~~~l~ld~I~~lDG~~d~~idq~~E~~~~~~e~~~~ie---p~~~i~~~g~~~~~~pf~~- 267 (272) |+|+|+||++++|+|+++.+.+|+++++++++|.++++..++.+.+.+..||..|++ |+.|+|++|+.....+=-- T Consensus 160 s~E~idtgl~eiD~i~~~~sseLdL~pi~~g~G~f~inE~vtge~sg~~AEv~sw~~~t~~L~V~n~~GsF~T~e~i~G~ 239 (292) T protein:vir:10 160 GSDNISTGVEEIDELETLFSSAIAIALSIGGTGDFDLGEIVTGGISGTEAEVKSWDSSSRILQVINRTGTFEEGESVTGN 239 (292) T ss_pred cCceecCCCCcccccccccccccceeecccCCccccCCceeeecccceEEEEEEccCCCceEEEEeCccccccCceeeEe Confidence 999999999999999999999999999999999999999999999999999999966 8889999987642211110 Q ss_pred --------ccccC Q lcl|NC_014260. 268 --------AFLDD 272 (272) Q Consensus 268 --------~~~~~ 272 (272) +.... T Consensus 240 ~Sga~~~v~si~~ 252 (292) T protein:vir:10 240 DSGSVWVVDSFDT 252 (292) T ss_pred ecCCeEEeeEEEE Confidence 00000 No 15 >protein:vir:103005 Length: 390 # NCBI annotation: gp110 # Family: family:all:1104 # MgeID: mge:1583 # MgeName: Syn9 # Cross-refs: genbank:acc:YP_717777;genbank:gi:113200614;genbank:GeneID:4239009 Probab=100.00 E-value=2.5e-96 Score=544.68 Aligned_cols=245 Identities=24% Similarity=0.426 Sum_probs=191.1 Q ss_pred eeecCCcchhhhhhhccccceeeccCcchhHHHHHHHHHHHHHhcCceEEEeeheecccccccccccccccccceeeeee Q lcl|NC_014260. 25 AKLEDNTGYANTNETEIMNPFVNFYKHENTQTLADALVAESIQMRGIELYYIPREYVKPDQLFGEDLQNKFTKAWKFAGY 104 (272) Q Consensus 25 a~le~~~gy~~t~~~~~~NpYfN~~g~~~eQ~L~~~LV~EsIqm~Gvdv~YlpRe~v~~D~v~~Ed~~skF~~A~~ieaY 104 (272) -...+.+||+++++.+++|||||+|||.+||+|+|+||+|||||||+||||||||+|++|+||+||++|||+|||+|||| T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~~~lv~e~i~~~g~~~~y~~r~~~~~d~~~~e~~~~~f~~~~~~~~y 80 (390) T protein:vir:10 1 MTYSNDPPNNCIQSDYTSSCRLNLNGSAQEQTFMENLIVESIELYGQNVYYLPRIYVNRDTILNEVETSRFEQALSVRAY 80 (390) T ss_pred CeecCCCcccceecceeeccEEEEeccCchhHHHHHHHHHHhHhcCceEEEechheeccccccccccccccccceEEEEE Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred chhhhccCCccchhhhcCceeeeeEEEEEcchhHhHhhcC-------CCCccccEEEecCCCceEEEEeeccCCchhhcC Q lcl|NC_014260. 105 LDSFEGYSGDNTYFSKFGMMVNDEVTITINPNLFKHQCNG-------TEPVSGDLIYFPMDNSLFEINWVQPYDPFYQVG 177 (272) Q Consensus 105 l~n~eGy~g~gd~~SKFG~~~~DE~Tf~IS~~rF~~~v~~-------~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~G 177 (272) |+|||||+|++|||||||||++|||||+|||+||++++++ +||+|||||||||+++||||+||||++||||+| T Consensus 81 ~~~~~~~~~~~~~~skfg~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~p~egdliy~p~~~~lfei~~ve~~~p~yq~G 160 (390) T protein:vir:10 81 VNNVEGWEGQGDLLSKFGVRIEDKTTFIFSRKKFTTAVDDNAVLNVEGRPNEGDLIWFPATRHLFEIKFVEAERPFYQLG 160 (390) T ss_pred eechhccCCccceeeecCceecceEEEEECCcchhhhhCCcccccccCCCCCCceEEecCCCCEEEEEecCCCCCceEcc Confidence 9999999999999999999999999999999999999998 499999999999999999999999999999999 Q ss_pred CceEEEEEEEEEecCCCccCcCCccccccccCccchhhhhhhhhhcchhhcccc--------------hhhh--hhhhhh Q lcl|NC_014260. 178 ANVQRRITATKFIYNGEELRPELQRNEGINIPEFSELDLMPVKNIDGLADISDI--------------QYEE--VNEINA 241 (272) Q Consensus 178 K~yv~~l~ce~F~Ys~E~i~t~~~~iD~i~~~~~~~l~ld~I~~lDG~~d~~id--------------q~~E--~~~~~~ 241 (272) |+|+|+|+|++|+||+|++++++++++.+............+..-.+....... .-.. .-.+-+ T Consensus 161 ~nyt~~i~a~lf~ySge~iat~~seid~I~~~~~~~v~~~~~t~g~~~~t~~~~v~~~g~ga~~~a~v~~g~Vt~vtItn 240 (390) T protein:vir:10 161 KGYVWECQCELFEYSDEDLDTGVAEIDAIETAFANAIKLVMDAGGTGAFTVGEEIVGDLYLATATATISGDAVDAVTVTD 240 (390) T ss_pred CceeeeeEEeeeccCCccccccccccccccccccceeeeeeccCCcccccccceeeecCcceeEEEEecCCeEEEEEEee Confidence 999999999999999999999999999887765443333332221111100000 0000 001122 Q ss_pred hhhhhhc-cccccC--C-CCCCCccCccccccccC Q lcl|NC_014260. 242 EAAEFVH-PYVVIN--G-RGEDAPPTAFDDAFLDD 272 (272) Q Consensus 242 e~~~~ie-p~~~i~--~-~g~~~~~~pf~~~~~~~ 272 (272) -|.-|.. |...|. | .|+++...+ ..-.. T Consensus 241 ~GsGYt~~~~ptVtisgg~gtgAt~ta---tv~~~ 272 (390) T protein:vir:10 241 GGEHYKSALPPTVTITGGGGSGATATA---TVSSA 272 (390) T ss_pred CCCCcccCceeEEEecCCCCccceeee---eeccc Confidence 2232322 111111 1 111111100 00011 No 16 >protein:vir:104739 Length: 470 # NCBI annotation: T4-like neck protein # Family: family:all:1104 # MgeID: mge:1630 # MgeName: P-SSM2 # Cross-refs: genbank:acc:YP_214353;genbank:gi:61805993;genbank:GeneID:3294259 Probab=100.00 E-value=1.6e-84 Score=480.03 Aligned_cols=229 Identities=28% Similarity=0.526 Sum_probs=175.6 Q ss_pred ccccceeeccCcchhHHHHHHHHHHHHHhcCceEEEeeheecccccccccccccccccceeeeeechhhhccCCccchhh Q lcl|NC_014260. 40 EIMNPFVNFYKHENTQTLADALVAESIQMRGIELYYIPREYVKPDQLFGEDLQNKFTKAWKFAGYLDSFEGYSGDNTYFS 119 (272) Q Consensus 40 ~~~NpYfN~~g~~~eQ~L~~~LV~EsIqm~Gvdv~YlpRe~v~~D~v~~Ed~~skF~~A~~ieaYl~n~eGy~g~gd~~S 119 (272) -.|||||| |||.+||+|+|+||+|||||||+||||||||+|++|+||+||++|||+|||+|||||+|||||+|+++||| T Consensus 1 ~~~~~~~~-~~~~~~~~~~~~~~~e~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (470) T protein:vir:10 1 MALNPFFL-QGTSSEQRLTQDLINEHLKIYGVEVTYIPRKYVNTKSIIEEVQSSKFDDNFAIEAYVNTYEGYGGQGDVLT 79 (470) T ss_pred CcccceeE-cCCCchhHHHHHHHHHHhHhccceEEEechhhcccccccccccccccccceeEEEEeecccCcCCcceeee Confidence 78999997 99999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hcCceeeeeEEEEEcchhHh------------------HhhcCCCCccccEEEecCCCceEEEEeeccCCchhhcCCceE Q lcl|NC_014260. 120 KFGMMVNDEVTITINPNLFK------------------HQCNGTEPVSGDLIYFPMDNSLFEINWVQPYDPFYQVGANVQ 181 (272) Q Consensus 120 KFG~~~~DE~Tf~IS~~rF~------------------~~v~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~GK~yv 181 (272) |||++++|||+|+|||+||+ +|+.+.||+|||||||||+|+||||+|||+++||||+||+|+ T Consensus 80 ~fg~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~p~egdl~~~p~~~~~~~i~~ve~~~p~~~~G~~~~ 159 (470) T protein:vir:10 80 KFGMSIRDEVTLTISKERFEDFIAPFMAGLDDGPGGNEEVILATRPREGDLVFFPLGSRLFEVKFVEHEDPFYQLGKNYV 159 (470) T ss_pred ecCcccceEEEEEECCccccccccchhhcccCcccccccccccCCcccccEEEecCCCCEEEEEecCCCCcchhcCccee Confidence 99999999999999999995 566678999999999999999999999999999999999999 Q ss_pred EEEEEEEEecCCCccCcCCccccccccCccch--hhhhhhhhhcchhhcc---cchhhhhhhhhhhhhhhhc-cccccCC Q lcl|NC_014260. 182 RRITATKFIYNGEELRPELQRNEGINIPEFSE--LDLMPVKNIDGLADIS---DIQYEEVNEINAEAAEFVH-PYVVING 255 (272) Q Consensus 182 ~~l~ce~F~Ys~E~i~t~~~~iD~i~~~~~~~--l~ld~I~~lDG~~d~~---idq~~E~~~~~~e~~~~ie-p~~~i~~ 255 (272) |+|+|++|+|++|.+++.+..++......-.. .++.. ..+..... ....--.-.+.+.+.-|.. |-.++.+ T Consensus 160 ~~it~~~f~ysge~~s~~v~~~~~~~~~~g~~~t~t~~~---~g~~~~~t~~~~~g~vt~ititn~Gsgyt~~ptVti~~ 236 (470) T protein:vir:10 160 YQLKCELFEYEDEVIDTSIDAIDTVVQDDGYISKLQLVG---IGRTAEVAASIGVGYVREIFLNNDGSGFTSPPTITFSA 236 (470) T ss_pred EEeeeceeEecCCccccceecccccccccccceeeeecC---CCccceeeeeecceeeeEeEeeccccceeccCEEEEcc Confidence 99999999999999999999998776532111 11110 00000000 0000000123344444444 4444333 Q ss_pred CCCCCccCcc-ccccccC Q lcl|NC_014260. 256 RGEDAPPTAF-DDAFLDD 272 (272) Q Consensus 256 ~g~~~~~~pf-~~~~~~~ 272 (272) .+.......- ...-... T Consensus 237 ~~~~~~~~a~~~~~t~~~ 254 (470) T protein:vir:10 237 SPAFTDARAVGILTTRAN 254 (470) T ss_pred CCCCCCccceeeEeecce Confidence 2221111111 0000000 No 17 >protein:vir:97237 Length: 122 # NCBI annotation: hypothetical protein ORF025 # Family: family:all:704 # MgeID: mge:1657 # MgeName: M6 # Cross-refs: genbank:acc:YP_001294533;genbank:gi:149408254;genbank:GeneID:5237102 Probab=36.72 E-value=1.2 Score=20.24 Aligned_cols=121 Identities=13% Similarity=0.119 Sum_probs=78.2 Q ss_pred ccceeeccCcchhHHHHHHHHHHHHHhcCceEEEeeheecccccccccc-cccccccceeeeeechhhhccCCccchhhh Q lcl|NC_014260. 42 MNPFVNFYKHENTQTLADALVAESIQMRGIELYYIPREYVKPDQLFGED-LQNKFTKAWKFAGYLDSFEGYSGDNTYFSK 120 (272) Q Consensus 42 ~NpYfN~~g~~~eQ~L~~~LV~EsIqm~Gvdv~YlpRe~v~~D~v~~Ed-~~skF~~A~~ieaYl~n~eGy~g~gd~~SK 120 (272) .+.|. .-|+.+. +.|+-+|..|.+.+.+-..-|+-.++. +-+.-...|++.+.+.+|.--.=+|.+ T Consensus 1 M~~y~------~~~~~a~----~Li~kfG~~vtl~r~~~g~y~~~~g~~~p~~~t~~~~~~~gv~~~~~~~~idGtl--- 67 (122) T protein:vir:97 1 MARFD------SAIALAK----KLIKKNGQAVTLRGFTAGAAPDPAKPWKPGGNVAADQTIEAVFLDYEQRYIDGQT--- 67 (122) T ss_pred Cccch------HHHHHHH----HHHHHhCCceEEEEeccceeCCCCCceecCCceeeeeeeEEEeeccchhhccCcE--- Confidence 23333 3444444 455559999998888766667666653 224446778999999888754333222 Q ss_pred cCceeeeeEEEEEcchhHhHhhcCCCCccccEEEecCCCceEEEEeeccCCchhhcCCceEEEEEEEE Q lcl|NC_014260. 121 FGMMVNDEVTITINPNLFKHQCNGTEPVSGDLIYFPMDNSLFEINWVQPYDPFYQVGANVQRRITATK 188 (272) Q Consensus 121 FG~~~~DE~Tf~IS~~rF~~~v~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~GK~yv~~l~ce~ 188 (272) |+..|..-+...... .-.|+-||+|-+ +..-|.|-.|++-+| .|--..|+|..-+ T Consensus 68 --I~~GD~~l~~~a~~~------~~~P~~gD~v~~--~g~~~~Vi~v~~i~p---a~~~v~y~lqlRk 122 (122) T protein:vir:97 68 --IRMGDQRVFMPAEGL------TAPPEVEGLVLR--GLEVWKVIAVKPLNP---NGQAIMYELQVRQ 122 (122) T ss_pred --EeecCEEEEEeeCCC------ccccccCCEEEe--CCEEEEEEeccccCC---CCceEEEEEEeeC Confidence 566676554432222 347888999965 778899999987766 4555667777777 No 18 >protein:vir:1385 Length: 107 # NCBI annotation: Gp8 protein # Family: family:all:3858 # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612837;genbank:gi:20065971;genbank:GeneID:935786 Probab=32.56 E-value=1.4 Score=19.75 Aligned_cols=106 Identities=8% Similarity=0.081 Sum_probs=75.0 Q ss_pred hcCc-eEEEeeheecccccccccccccccccceeeeeechhhhccCCccchhhhcCceeeeeEEEEEcchhHhHhhcCCC Q lcl|NC_014260. 68 MRGI-ELYYIPREYVKPDQLFGEDLQNKFTKAWKFAGYLDSFEGYSGDNTYFSKFGMMVNDEVTITINPNLFKHQCNGTE 146 (272) Q Consensus 68 m~Gv-dv~YlpRe~v~~D~v~~Ed~~skF~~A~~ieaYl~n~eGy~g~gd~~SKFG~~~~DE~Tf~IS~~rF~~~v~~~r 146 (272) |.+- -|....++- ..|. .|... ..+...+++-|.+....| +++++-=+++..-.++|+| ||..-++..+ T Consensus 1 ~~~~hRI~i~~~~~-~~D~-~G~~~-~~w~~~~~~WA~v~~~~g----~E~~~a~~~~~~~~~~f~i---Ry~~~i~~~~ 70 (107) T protein:vir:13 1 MARYERISIKKLEE-KNIK-GRRQE-ECLIPFYDCWAEILDLYG----QELYGALQMKLENTIIFKI---RYCKKVEELR 70 (107) T ss_pred CCcceEEEEEeeee-eeCC-CCCee-cceEeEEEEEEEEecCCc----hheeecceeheeeeEEEEE---EecCCccccc Confidence 7664 455555554 4574 45443 469999999999998754 5677777788888888888 3444455556 Q ss_pred CccccEEEecCCCceEEEEeeccCCchhhcCCceEEEEEEEEEe Q lcl|NC_014260. 147 PVSGDLIYFPMDNSLFEINWVQPYDPFYQVGANVQRRITATKFI 190 (272) Q Consensus 147 P~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~GK~yv~~l~ce~F~ 190 (272) +..++-|.+ .+..|+|..|.+.+ .++-..+|.|+.=. T Consensus 71 ~t~~~Ri~~--~g~~y~I~~v~~~~-----~~~~~l~i~c~eV~ 107 (107) T protein:vir:13 71 NKENFIVEW--QGRKYEIYYPDFLG-----YNKQFVKLKCKEVL 107 (107) T ss_pred cCcCcEEEE--CCeEEEEEecCCcc-----cCCeEEEEEEEEeC Confidence 667777766 78999999997433 25557899999776 Done!