Virfam_CNT_anal:NC_013698

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : CMP1 | Genbank acc : NC_013698

Category to which the Query Phage was assigned :

The phage most likely belong to the Podoviridae class
However, some subunits are missing to confidently assign it to one of the 4 canonical Types characterized in Lopes et al (2014)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster.

Number of sequences analyzed : 74

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	15	lcl\|NC_013698.1_cdsid_YP_003359106.1	HHsearch (proba=100.00%)
Portal	12	lcl\|NC_013698.1_cdsid_YP_003359103.1	HHsearch (proba=100.00%)
TermL	11	lcl\|NC_013698.1_cdsid_YP_003359102.1	Blast (e-value=4e-49)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	32	lcl\|NC_013698.1_cdsid_YP_003359123.1	HHsearch (proba=94.99%)
Ad4	NOT FOUND

NB : Matched obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:95512 protein:vir:79548 protein:vir:103886	F10 cdtI D3112	19 % 18 % 14 %
Portal	protein:vir:10321 protein:vir:95542 protein:vir:3420	VHML F10 lambda	14 % 13 % 13 %
TermL	protein:vir:78228 protein:vir:7851 protein:vir:7319	Bethlehem CJW1 epsilon15	20 % 19 % 18 %
Hc3	protein:vir:3133	VpV262	19 %