Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : VpV262 | Genbank acc : NC_003907 | Aclame index mge :64

Category to which the Query Phage was assigned : Podoviridae of Type3 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 67

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	57	lcl\|Aclame:protein:vir:3136\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Portal	60	lcl\|Aclame:protein:vir:3139\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
TermL	61	lcl\|Aclame:protein:vir:3140\|NCBI_annot:hypothetical	Blast (e-value=0)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	51	lcl\|Aclame:protein:vir:3130\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Hc3	54	lcl\|Aclame:protein:vir:3133\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Ad3<->Hc3	3	2

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:3136 protein:vir:95451 protein:vir:94622	VpV262 PA11 Pf-WMP4	91 % 29 % 17 %
Portal	protein:vir:3139 protein:vir:95449 protein:vir:80165	VpV262 PA11 Pf-WMP3	98 % 32 % 16 %
TermL	protein:vir:3140 protein:vir:95431 protein:vir:2600	VpV262 PA11 SIO1	100 % 38 % 38 %
Ad3	protein:vir:3130 protein:vir:2626 protein:vir:95463	VpV262 SIO1 PA11	100 % 27 % 26 %
Hc3	protein:vir:3133 protein:vir:95475 protein:vir:2625	VpV262 PA11 SIO1	100 % 22 % 19 %