Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phiW-14 | Genbank acc : NC_013697

Category to which the Query Phage was assigned : Myoviridae of Type2 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 236

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	38	lcl\|NC_013697.1_cdsid_YP_003358893.1	HHsearch (proba=100.00%)
Portal	42	lcl\|NC_013697.1_cdsid_YP_003358897.1	HHsearch (proba=100.00%)
TermL	46	lcl\|NC_013697.1_cdsid_YP_003358901.1	Blast (e-value=7e-92)
MTP	44	lcl\|NC_013697.1_cdsid_YP_003358899.1	Blast (e-value=5e-22)
Sheath	45	lcl\|NC_013697.1_cdsid_YP_003358900.1	HHsearch (proba=100.00%)
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	50	lcl\|NC_013697.1_cdsid_YP_003358905.1	HHsearch (proba=100.00%)
Hc2	49	lcl\|NC_013697.1_cdsid_YP_003358904.1	HHsearch (proba=100.00%)
Tc2	48	lcl\|NC_013697.1_cdsid_YP_003358903.1	HHsearch (proba=100.00%)
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:104915 protein:vir:106998 protein:vir:103181	P-SSM2 S-PM2 Syn9	46 % 42 % 40 %
Portal	protein:vir:104500 protein:vir:103177 protein:vir:104892	P-SSM4 Syn9 P-SSM2	36 % 34 % 33 %
TermL	protein:vir:104536 protein:vir:103169 protein:vir:106989	P-SSM4 Syn9 S-PM2	35 % 35 % 34 %
MTP	protein:vir:106918 protein:vir:104771 protein:vir:103176	S-PM2 P-SSM2 Syn9	32 % 31 % 29 %
Sheath	protein:vir:104477 protein:vir:108052 protein:vir:80984	P-SSM4 JS98 Phi1	28 % 27 % 27 %
Ad2	protein:vir:101153 protein:vir:101857 protein:vir:100534	44RR2.8t 31 25	26 % 26 % 26 %
Hc2	protein:vir:98258 protein:vir:104739 protein:vir:103005	RB43 P-SSM2 Syn9	25 % 25 % 25 %
Tc2	protein:vir:104479 protein:vir:103006 protein:vir:81023	P-SSM4 Syn9 Phi1	25 % 23 % 22 %