Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : S1249 | Genbank acc : NC_013597

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 7) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 66

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	21	lcl\|NC_013597.1_cdsid_YP_003344801.1	HHsearch (proba=100.00%)
Portal	27	lcl\|NC_013597.1_cdsid_YP_003344807.1	HHsearch (proba=100.00%)
TermL	28	lcl\|NC_013597.1_cdsid_YP_003344808.1	Blast (e-value=0)
MTP	NOT FOUND
Sheath	16	lcl\|NC_013597.1_cdsid_YP_003344796.1	HHsearch (proba=100.00%)
Ad1	20	lcl\|NC_013597.1_cdsid_YP_003344800.1	HHsearch (proba=100.00%)
Hc1	18	lcl\|NC_013597.1_cdsid_YP_003344798.1	HHsearch (proba=100.00%)
Ne1	19	lcl\|NC_013597.1_cdsid_YP_003344799.1	HHsearch (proba=100.00%)
Tc1	17	lcl\|NC_013597.1_cdsid_YP_003344797.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:5255 protein:vir:107687 protein:vir:80068	Aaphi23 T1 B054	100 % 17 % 16 %
Portal	protein:vir:5249 protein:vir:80040 protein:vir:103219	Aaphi23 B054 JK06	97 % 22 % 21 %
TermL	protein:vir:5248 protein:vir:103223 protein:vir:80106	Aaphi23 JK06 B054	100 % 48 % 33 %
Sheath	protein:vir:5260 protein:vir:80052 protein:vir:106730	Aaphi23 B054 Bcep1	100 % 20 % 18 %
Ad1	protein:vir:5256 protein:vir:96108 protein:vir:99570	Aaphi23 F8 BcepF1	100 % 32 % 26 %
Hc1	protein:vir:5258 protein:vir:95261 protein:vir:80104	Aaphi23 Felix 01 B054	100 % 21 % 20 %
Ne1	protein:vir:5257 protein:vir:80037 protein:vir:99546	Aaphi23 B054 BcepF1	99 % 33 % 31 %
Tc1	protein:vir:5259 protein:vir:94061 protein:vir:107715	Aaphi23 OP2 BcepB1A	100 % 15 % 21 %