Virfam_CNT_anal:NC_013021

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : PSS2 | Genbank acc : NC_013021

Category to which the Query Phage was assigned :

The queried phage did not match all the conditions required to be definitively assigned to any of the 4 canonical Types characterized in Lopes et al (2014)
From the subunits detected, the phage appears as an hybrid exception containing superfamilies from different canonical Types

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 131

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	92	lcl\|NC_013021.1_cdsid_YP_003084236.1	HHsearch (proba=100.00%)
Portal	25	lcl\|NC_013021.1_cdsid_YP_003084169.1	HHsearch (proba=100.00%)
TermL	2	lcl\|NC_013021.1_cdsid_YP_003084146.1	Blast (e-value=5e-61)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	63	lcl\|NC_013021.1_cdsid_YP_003084207.1	HHsearch (proba=98.37%)
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	88	lcl\|NC_013021.1_cdsid_YP_003084232.1	HHsearch (proba=99.15%)
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matched obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:97255 protein:vir:94933 protein:vir:95318	M6 Xp15 phiV10	28 % 25 % 24 %
Portal	protein:vir:80453 protein:vir:97265 protein:vir:78393	BcepGomr M6 SETP3	20 % 20 % 19 %
TermL	protein:vir:80106 protein:vir:5248 protein:vir:101556	B054 Aaphi23 Bcep43	31 % 29 % 26 %
Ne1	protein:vir:96829 protein:vir:105330 protein:vir:107099	EW PH15 CNPH82	24 % 22 % 21 %
Hc2	protein:vir:103005 protein:vir:104739 protein:vir:104476	Syn9 P-SSM2 P-SSM4	18 % 15 % 14 %