Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : JSE | Genbank acc : NC_012740

Category to which the Query Phage was assigned : Myoviridae of Type2 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 277

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	165	lcl\|NC_012740.1_cdsid_YP_002922237.1	HHsearch (proba=100.00%)
Portal	160	lcl\|NC_012740.1_cdsid_YP_002922232.1	HHsearch (proba=100.00%)
TermL	157	lcl\|NC_012740.1_cdsid_YP_002922229.1	Blast (e-value=0)
MTP	159	lcl\|NC_012740.1_cdsid_YP_002922231.1	Blast (e-value=8e-96)
Sheath	158	lcl\|NC_012740.1_cdsid_YP_002922230.1	HHsearch (proba=100.00%)
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	152	lcl\|NC_012740.1_cdsid_YP_002922224.1	HHsearch (proba=100.00%)
Hc2	153	lcl\|NC_012740.1_cdsid_YP_002922225.1	HHsearch (proba=100.00%)
Tc2	155	lcl\|NC_012740.1_cdsid_YP_002922227.1	HHsearch (proba=100.00%)
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:80986 protein:vir:6601 protein:vir:98143	Phi1 RB49 RB43	95 % 94 % 71 %
Portal	protein:vir:81017 protein:vir:6596 protein:vir:101189	Phi1 RB49 44RR2.8t	99 % 99 % 59 %
TermL	protein:vir:80989 protein:vir:6593 protein:vir:103455	Phi1 RB49 RB32	99 % 99 % 70 %
MTP	protein:vir:80985 protein:vir:6595 protein:vir:98264	Phi1 RB49 RB43	99 % 99 % 71 %
Sheath	protein:vir:6594 protein:vir:80984 protein:vir:108052	RB49 Phi1 JS98	97 % 96 % 67 %
Ad2	protein:vir:81013 protein:vir:6589 protein:vir:6889	Phi1 RB49 RB69	97 % 97 % 65 %
Hc2	protein:vir:6590 protein:vir:80995 protein:vir:107937	RB49 Phi1 JS98	97 % 94 % 61 %
Tc2	protein:vir:81023 protein:vir:6591 protein:vir:107931	Phi1 RB49 JS98	98 % 98 % 58 %