Query lcl|NC_012740.1_cdsid_YP_002922225.1 [gene=14] [protein=neck protein] [protein_id=YP_002922225.1] [location=86770..87510] Match_columns 246 No_of_seqs 30 out of 34 Neff 3.5 Searched_HMMs 1612 Date Thu Nov 7 15:41:49 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_153 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_153_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:80995 Length: 246 100.0 6E-143 4E-146 800.3 20.2 246 1-246 1-246 (246) 2 protein:vir:6590 Length: 246 # 100.0 9E-143 6E-146 799.3 19.9 246 1-246 1-246 (246) 3 protein:vir:6890 Length: 254 # 100.0 1E-137 8E-141 771.2 19.3 246 1-246 3-251 (254) 4 protein:vir:101154 Length: 252 100.0 3E-137 2E-140 768.9 18.7 245 1-246 1-250 (252) 5 protein:vir:101800 Length: 252 100.0 3E-137 2E-140 768.9 18.7 245 1-246 1-250 (252) 6 protein:vir:98258 Length: 248 100.0 2E-135 1E-138 758.8 18.6 245 1-246 3-247 (248) 7 protein:vir:100535 Length: 253 100.0 7E-135 4E-138 756.0 18.1 245 1-246 1-250 (253) 8 protein:vir:107937 Length: 257 100.0 5E-134 3E-137 751.5 18.7 246 1-246 3-253 (257) 9 protein:vir:7199 Length: 256 # 100.0 7E-134 4E-137 750.6 18.5 246 1-246 3-254 (256) 10 protein:vir:103452 Length: 256 100.0 1E-133 7E-137 749.6 18.5 246 1-246 3-254 (256) 11 protein:vir:106285 Length: 262 100.0 5E-133 3E-136 745.8 16.8 243 1-246 3-245 (262) 12 protein:vir:5658 Length: 278 # 100.0 9E-126 6E-129 706.1 17.4 244 1-246 3-278 (278) 13 protein:vir:104476 Length: 308 100.0 4E-113 2E-116 637.0 15.4 229 18-246 1-249 (308) 14 protein:vir:106986 Length: 292 100.0 4E-108 2E-111 609.4 15.5 223 23-246 1-240 (292) 15 protein:vir:103005 Length: 390 100.0 6.1E-95 3.8E-98 537.1 15.1 238 8-246 1-255 (390) 16 protein:vir:104739 Length: 470 100.0 1.4E-83 8.4E-87 474.9 14.4 211 23-246 1-234 (470) 17 protein:vir:1385 Length: 107 # 47.9 0.69 0.00043 21.5 9.1 106 51-173 1-107 (107) 18 protein:vir:97237 Length: 122 29.1 1.7 0.001 19.3 10.6 121 25-171 1-122 (122) No 1 >protein:vir:80995 Length: 246 # NCBI annotation: gp14 neck protein # Family: family:all:1104 # MgeID: mge:1888 # MgeName: Phi1 # Cross-refs: genbank:acc:YP_001469495;genbank:gi:157311452;genbank:GeneID:5602161 Probab=100.00 E-value=6e-143 Score=800.30 Aligned_cols=246 Identities=94% Similarity=1.459 Sum_probs=245.8 Q ss_pred CCcccceeeecCCcchhhhcccccccceeEecCcchhHHHHHHHHHHHHHhcCceEEEeeheeccccccccccccccccc Q lcl|NC_012740. 1 MFNNTLFARLESQKDYENTRQTEILNPYVNFNRHTNTQTLADVMVAEAIQMRGVELYYIPREFVKPDMIFGEDVQSKFTK 80 (246) Q Consensus 1 m~~~~lfa~le~~~~y~~~~~~~~~NpYfN~~g~~~eQ~L~~~LV~EsIqm~G~dv~YlpRe~v~~D~v~~Ed~~skF~~ 80 (246) |||+|||||||+||||++||+++|||||||++||++||+|+|+||+|||||||+|||||||++|++|+||+|+++|||++ T Consensus 1 ~~~~~lfa~l~~~~gy~~~~~~~~lNPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~skF~k 80 (246) T protein:vir:80 1 MFDSTLFARLESQKDYENTRQTEILNPYVNFNSHTNTQTLADIMVAESIQMRGVEMYYIPREFVKPDMIFGEDVQSKFTK 80 (246) T ss_pred CCcccceeeecCCcchhhhcccccccceeeeCCCCchhhHHHHHHHHHHHHcCceEEEechhhhcccccccccccccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeeeeechhhhccCCCcceeeecCceeeeeEEEEEcchhhhhhhcCCCCccccEEEecCCCceEEEeeeccCCchhhcC Q lcl|NC_012740. 81 AWKFAAYINSFDGYEGAGNFFQSMGYTANDELTFTVNPNLFKHQVDDQEPKSGDLIYIPMSNDLFEINYVEPYQPFFQAG 160 (246) Q Consensus 81 a~~ieaY~~n~egy~g~~d~~SKFG~~~~DE~tf~IS~~rF~~~~~~~~P~EGDLIYfPm~n~LFEI~~VE~~~PFyQ~G 160 (246) ||+|||||+||+||+|+|+||||||||++|||||+|||+||+++++++||+|||||||||+|+||||+||||++||||+| T Consensus 81 a~~ieaYl~s~egy~G~gd~~SKFG~~v~DEvt~~Is~~rF~~~~~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~G 160 (246) T protein:vir:80 81 AWKFAAYINSFDGYEGAGNFFQSFGYTANDELTITINPNLFKHQVDNKEPKSGDLFYIPMSNDLFEISYVEPYQPFFQAG 160 (246) T ss_pred ceeEEEeeehhhccCCccceeeecCceecceEEEEEccchHhhhhCCCCCccccEEEEcCCCceEEEecccCCCchhhhC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CceEEEEEEEEeecCCccccccccccccccCCCccCccHHHHHHHhhhhhcCcccccchhhhhccccccccccceecccC Q lcl|NC_012740. 161 KNAMRKIIAEKFVYSGEELRPELQRNEGINVDEFADLDLAPITNLDGLTDINLDQYKEDKQFRSEGQDFIDPFDPINGKG 240 (246) Q Consensus 161 k~~v~~l~ce~F~Ys~E~i~t~~~~id~i~~de~~~~dld~I~~ldg~~d~n~eq~eE~~~~~~e~~~~~e~~~~~~~~g 240 (246) |||||+|+|+||+||||+|+||+++||+|++|+.++|||+||+||||++|||++||+|++++++||++|||||+|||||| T Consensus 161 Kn~v~~l~ce~F~Ys~E~~~t~i~~~d~I~~de~~~ldl~~i~nldg~~Din~~~~~e~~~~~~e~~~f~~~~~~~~~~g 240 (246) T protein:vir:80 161 KNAMRKIIAEKFVYSGEELRPELQRNEGINVDEFADLDLAPITNLDGLTDINLDQYKEDKQFRSEGQDFIDPFDPINGKG 240 (246) T ss_pred CCeEEEEEEEEEeecCcccccCCCCccccCCCCcccccHHHHhhcccccccCcccchhhhhhhcchhhhcccceeecCCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CccccC Q lcl|NC_012740. 241 SPFSDF 246 (246) Q Consensus 241 ~p~~~~ 246 (246) |||++| T Consensus 241 spf~~~ 246 (246) T protein:vir:80 241 SPFADF 246 (246) T ss_pred CccccC Confidence 999999 No 2 >protein:vir:6590 Length: 246 # NCBI annotation: neck protein # Family: family:all:1104 # MgeID: mge:139 # MgeName: RB49 # Cross-refs: genbank:acc:NP_891721;genbank:gi:33620667;genbank:GeneID:1725307 Probab=100.00 E-value=9.3e-143 Score=799.26 Aligned_cols=246 Identities=97% Similarity=1.473 Sum_probs=245.8 Q ss_pred CCcccceeeecCCcchhhhcccccccceeEecCcchhHHHHHHHHHHHHHhcCceEEEeeheeccccccccccccccccc Q lcl|NC_012740. 1 MFNNTLFARLESQKDYENTRQTEILNPYVNFNRHTNTQTLADVMVAEAIQMRGVELYYIPREFVKPDMIFGEDVQSKFTK 80 (246) Q Consensus 1 m~~~~lfa~le~~~~y~~~~~~~~~NpYfN~~g~~~eQ~L~~~LV~EsIqm~G~dv~YlpRe~v~~D~v~~Ed~~skF~~ 80 (246) |||+|||||||+||||++||+++|||||||+|||.+||+|+|+||+|||||||+|||||||++|++|+||+|+++|||++ T Consensus 1 ~~~~~lfa~l~~~~gy~~~~~~~~lNPYfN~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~skF~k 80 (246) T protein:vir:65 1 MFNNTLFARLESQKDYENTRQTEILNPYVNFHKYTNTQTLADVMVAEAIQMRGVELYYIPREFVKPDMIFGEDVQSKFTK 80 (246) T ss_pred CCcccceeeecCCcchhhhcccccccceeecCCCcchhhHHHHHHHHHHHHcCceEEEechhhccccccccccccccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeeeeechhhhccCCCcceeeecCceeeeeEEEEEcchhhhhhhcCCCCccccEEEecCCCceEEEeeeccCCchhhcC Q lcl|NC_012740. 81 AWKFAAYINSFDGYEGAGNFFQSMGYTANDELTFTVNPNLFKHQVDDQEPKSGDLIYIPMSNDLFEINYVEPYQPFFQAG 160 (246) Q Consensus 81 a~~ieaY~~n~egy~g~~d~~SKFG~~~~DE~tf~IS~~rF~~~~~~~~P~EGDLIYfPm~n~LFEI~~VE~~~PFyQ~G 160 (246) ||+|||||+||+||+|+|+||||||||++|||||+|||+||+++++++||+|||||||||+|+||||+||||++||||+| T Consensus 81 a~~ieaYl~~~egy~G~~d~~SKFG~~v~DEvt~~Is~~rF~~~~~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~G 160 (246) T protein:vir:65 81 AWKFAAYINSFDGYEGAGNFFSSFGYQANDELTFTVNPNLFKHQVDDQEPKSGDLIYIPMSNDLFEINYVEPYQPFFQAG 160 (246) T ss_pred ceeEEEeeehhhccCCccceeeecCceecceEEEEEcCchhhhhcCCCCCccccEEEEcCCCcEEEEecccCCCchhhhC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CceEEEEEEEEeecCCccccccccccccccCCCccCccHHHHHHHhhhhhcCcccccchhhhhccccccccccceecccC Q lcl|NC_012740. 161 KNAMRKIIAEKFVYSGEELRPELQRNEGINVDEFADLDLAPITNLDGLTDINLDQYKEDKQFRSEGQDFIDPFDPINGKG 240 (246) Q Consensus 161 k~~v~~l~ce~F~Ys~E~i~t~~~~id~i~~de~~~~dld~I~~ldg~~d~n~eq~eE~~~~~~e~~~~~e~~~~~~~~g 240 (246) |||||+|+|+||+||||+|+||+++||+|++|+.++|||+||+||||++|||++||+|++++++||++|||||+|||||| T Consensus 161 Kn~v~~l~ce~F~Ys~E~~~~~i~~~d~I~~de~~~ldl~~i~~ldg~~Din~~~~~e~~~~~~e~~~f~~~~~~~~~~g 240 (246) T protein:vir:65 161 KNAMRKIIAEKFVYSGEELRPELQRNEGINVDEFADLDLAPITNLDGLTDINLDQYKEDKQFRSEGQDFIDPFDPINGKG 240 (246) T ss_pred CCeEEEEEEEEEeecCcccccCCCCccccCCCCcccccHHHHhhcccccccCccchhhhhhhhcchhhhcccceeecCCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CccccC Q lcl|NC_012740. 241 SPFSDF 246 (246) Q Consensus 241 ~p~~~~ 246 (246) |||++| T Consensus 241 spf~~~ 246 (246) T protein:vir:65 241 SPFADF 246 (246) T ss_pred CccccC Confidence 999999 No 3 >protein:vir:6890 Length: 254 # NCBI annotation: gp14 neck protein # Family: family:all:1104 # MgeID: mge:140 # MgeName: RB69 # Cross-refs: genbank:acc:NP_861866;genbank:gi:32453657;genbank:GeneID:1494292 Probab=100.00 E-value=1.2e-137 Score=771.20 Aligned_cols=246 Identities=61% Similarity=1.112 Sum_probs=243.9 Q ss_pred CCcccceeeecCCcchhhhcccccccceeEecCcchhHHHHHHHHHHHHHhcCceEEEeeheeccccccccccccccccc Q lcl|NC_012740. 1 MFNNTLFARLESQKDYENTRQTEILNPYVNFNRHTNTQTLADVMVAEAIQMRGVELYYIPREFVKPDMIFGEDVQSKFTK 80 (246) Q Consensus 1 m~~~~lfa~le~~~~y~~~~~~~~~NpYfN~~g~~~eQ~L~~~LV~EsIqm~G~dv~YlpRe~v~~D~v~~Ed~~skF~~ 80 (246) -||+|||||||+++||++|++++|||||||+|||++||+|+|+||+|||||||+|||||||++|++|+||+|+++|||++ T Consensus 3 ~~d~~lfa~le~~~gy~~t~~~~~lNPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~skF~k 82 (254) T protein:vir:68 3 TYDKNLFAKLENRGGYSQTNETEILNPFVNFNNYENSQTLADVLVAESIQMRGIECFYVPREYVAVDLIFGEDLKNKFTK 82 (254) T ss_pred ccccceeeeecCCcchhhhhhccccceeEEeeccCchhHHHHHHHHHHHHHcCceEEEechhhhcccccccccccccccc Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeeeeechhhhccCCCcceeeecCceeeeeEEEEEcchhhhhhhcCCCCccccEEEecCCCceEEEeeeccCCchhhcC Q lcl|NC_012740. 81 AWKFAAYINSFDGYEGAGNFFQSMGYTANDELTFTVNPNLFKHQVDDQEPKSGDLIYIPMSNDLFEINYVEPYQPFFQAG 160 (246) Q Consensus 81 a~~ieaY~~n~egy~g~~d~~SKFG~~~~DE~tf~IS~~rF~~~~~~~~P~EGDLIYfPm~n~LFEI~~VE~~~PFyQ~G 160 (246) ||+|||||+||+||+|+++||||||||++|||||+|||+||+++++++||+|||||||||+|+||||+||||++||||+| T Consensus 83 a~~ieaYl~s~egy~G~~d~~SKFG~~v~DEvt~~Is~~rF~~~v~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~G 162 (254) T protein:vir:68 83 AWKFAAYLNSFEGYEGAKSFFSNFGMQVQDEVTLSINPGLFKHQVNNQEPKEGDLIYFPMDNSLFEINWVEPYDPFYQVG 162 (254) T ss_pred ceeEEEeeehhhccCCcccchhhcCceecceEEEEEcCchhhhhcCCCCCccccEEEEcCCCceEEEeccCCCCchhhhC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CceEEEEEEEEeecCCccccccccccccccCCCccCccHHHHHHHhhhhhcCcccccchhhhhccccccccccceecccC Q lcl|NC_012740. 161 KNAMRKIIAEKFVYSGEELRPELQRNEGINVDEFADLDLAPITNLDGLTDINLDQYKEDKQFRSEGQDFIDPFDPINGKG 240 (246) Q Consensus 161 k~~v~~l~ce~F~Ys~E~i~t~~~~id~i~~de~~~~dld~I~~ldg~~d~n~eq~eE~~~~~~e~~~~~e~~~~~~~~g 240 (246) |+|||+|+|+||+||||+|+|||++||+|+.++..+|||+||++|||++||+++|++|+++|++||++|||||+|||||| T Consensus 163 Kn~~~~l~ce~F~Ys~E~idt~i~~id~I~~~e~~~ldl~~i~~ldG~~di~~~~~~E~~~~~~e~~~f~e~~~~vn~~g 242 (254) T protein:vir:68 163 KNAIRKITAGKFIYSGEEINPVLQKNEGINIPEFSDLELNPVRNLDGIHDINIDEYSEVEQINSEASEYVEPYVVVNNRG 242 (254) T ss_pred CceEEEEEEEEEeeCCccccCCCcccCCccCcccCCcchhhHhhhcchhhccccchhhHHHHHhhhhhhcccceeecCCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ---CccccC Q lcl|NC_012740. 241 ---SPFSDF 246 (246) Q Consensus 241 ---~p~~~~ 246 (246) |||++= T Consensus 243 ~~~~pf~~~ 251 (254) T protein:vir:68 243 RQNSPFDDG 251 (254) T ss_pred CCCCccccc Confidence 898764 No 4 >protein:vir:101154 Length: 252 # NCBI annotation: neck protein # Family: family:all:1104 # MgeID: mge:1582 # MgeName: 44RR2.8t # Cross-refs: genbank:acc:NP_932505;genbank:gi:37651631;genbank:GeneID:2610647 Probab=100.00 E-value=3.3e-137 Score=768.86 Aligned_cols=245 Identities=52% Similarity=0.986 Sum_probs=244.1 Q ss_pred CCcccceeeecCCcchhhhcccccccceeEecCcchhHHHHHHHHHHHHHhcCceEEEeeheeccccccccccccccccc Q lcl|NC_012740. 1 MFNNTLFARLESQKDYENTRQTEILNPYVNFNRHTNTQTLADVMVAEAIQMRGVELYYIPREFVKPDMIFGEDVQSKFTK 80 (246) Q Consensus 1 m~~~~lfa~le~~~~y~~~~~~~~~NpYfN~~g~~~eQ~L~~~LV~EsIqm~G~dv~YlpRe~v~~D~v~~Ed~~skF~~ 80 (246) |||+|||||||+++||++|++++|||||||++||++||+|+|+||+|||||||+|||||||++|++|+||+|+++|||++ T Consensus 1 m~d~~lfa~le~~~gy~~t~~~~~lNPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlpRe~v~~D~i~~Ed~~SkF~k 80 (252) T protein:vir:10 1 MMDKSLFATLENRGGYMRTNEKNILNPYVKFNKHEGTQALQDTLVAESIQMRGIEFYYLEREFTDLDLLFGEDVNSRFEK 80 (252) T ss_pred CCCccceeEecCCcchhhhhhhccccceeeecCccchhHHHHHHHHHHHHHcCceEEEechhhccccccccccccccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeeeeechhhhccCCCcceeeecCceeeeeEEEEEcchhhhhhhcCCCCccccEEEecCCCceEEEeeeccCCchhhcC Q lcl|NC_012740. 81 AWKFAAYINSFDGYEGAGNFFQSMGYTANDELTFTVNPNLFKHQVDDQEPKSGDLIYIPMSNDLFEINYVEPYQPFFQAG 160 (246) Q Consensus 81 a~~ieaY~~n~egy~g~~d~~SKFG~~~~DE~tf~IS~~rF~~~~~~~~P~EGDLIYfPm~n~LFEI~~VE~~~PFyQ~G 160 (246) ||+|||||+||+||+|+|+||||||||++|||||+|||+||+++++|+||+|||||||||+|+||||+||||++||||+| T Consensus 81 a~~ieaYl~s~egy~G~gd~~SKFG~~~~DEvt~~Is~~rF~~qv~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~G 160 (252) T protein:vir:10 81 AWKFAAWLNSFESYEGQQSFFSKFGHTQNDEIRISINPGLFKYQVNGKEPALGDLIYMPMDNSLFEITWVEPYSPFYQNG 160 (252) T ss_pred ceeEEEeeehhhccCCccceeeecCceecceEEEEEcCchhhhhccCCCCccccEEEEcCCCcEEEEeccCCCCchhhhC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CceEEEEEEEEeecCCccccccccccccccCCCccCccHHHHHHHhhhhhcCcccccchhhhhccccccccccceecccC Q lcl|NC_012740. 161 KNAMRKIIAEKFVYSGEELRPELQRNEGINVDEFADLDLAPITNLDGLTDINLDQYKEDKQFRSEGQDFIDPFDPINGKG 240 (246) Q Consensus 161 k~~v~~l~ce~F~Ys~E~i~t~~~~id~i~~de~~~~dld~I~~ldg~~d~n~eq~eE~~~~~~e~~~~~e~~~~~~~~g 240 (246) |||||+|+|+||+||||+|+|++++||+|+ ++.+++||+||++||||+||+++|++|++++++||++|||||+|||||| T Consensus 161 kn~~~~l~ce~F~Ys~E~idt~~~~id~Ie-~~~s~ldl~~i~~ldG~~Di~~~~~~e~~~~~~e~~~~~e~~~~i~~~~ 239 (252) T protein:vir:10 161 KNPIRVIVAQKFIYSGEKITPVVQEKPEIE-DMYNGLDLAPLLNLDGMIDQKIDQFAENIAVQQKVKQYAEPFDPISTNS 239 (252) T ss_pred CCeEEEEEEEEEeeCCceecCcccccCccc-hhhhccchHHHhhcCCeeccccccchhhHHHHHhhhhhhccceeecCCC Confidence 999999999999999999999999999999 9999999999999999999999999999999999999999999999999 Q ss_pred -----CccccC Q lcl|NC_012740. 241 -----SPFSDF 246 (246) Q Consensus 241 -----~p~~~~ 246 (246) |||+.- T Consensus 240 ~~~~~~pf~~~ 250 (252) T protein:vir:10 240 FGNFDSPFGKH 250 (252) T ss_pred CCCcCCccccc Confidence 999999 No 5 >protein:vir:101800 Length: 252 # NCBI annotation: gp14 neck protein # Family: family:all:1104 # MgeID: mge:1580 # MgeName: 31 # Cross-refs: genbank:acc:YP_238877;genbank:gi:66391952;genbank:GeneID:3416627 Probab=100.00 E-value=3.3e-137 Score=768.86 Aligned_cols=245 Identities=52% Similarity=0.986 Sum_probs=244.1 Q ss_pred CCcccceeeecCCcchhhhcccccccceeEecCcchhHHHHHHHHHHHHHhcCceEEEeeheeccccccccccccccccc Q lcl|NC_012740. 1 MFNNTLFARLESQKDYENTRQTEILNPYVNFNRHTNTQTLADVMVAEAIQMRGVELYYIPREFVKPDMIFGEDVQSKFTK 80 (246) Q Consensus 1 m~~~~lfa~le~~~~y~~~~~~~~~NpYfN~~g~~~eQ~L~~~LV~EsIqm~G~dv~YlpRe~v~~D~v~~Ed~~skF~~ 80 (246) |||+|||||||+++||++|++++|||||||++||++||+|+|+||+|||||||+|||||||++|++|+||+|+++|||++ T Consensus 1 m~d~~lfa~le~~~gy~~t~~~~~lNPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlpRe~v~~D~i~~Ed~~SkF~k 80 (252) T protein:vir:10 1 MMDKSLFATLENRGGYMRTNEKNILNPYVKFNKHEGTQALQDTLVAESIQMRGIEFYYLEREFTDLDLLFGEDVNSRFEK 80 (252) T ss_pred CCCccceeEecCCcchhhhhhhccccceeeecCccchhHHHHHHHHHHHHHcCceEEEechhhccccccccccccccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeeeeechhhhccCCCcceeeecCceeeeeEEEEEcchhhhhhhcCCCCccccEEEecCCCceEEEeeeccCCchhhcC Q lcl|NC_012740. 81 AWKFAAYINSFDGYEGAGNFFQSMGYTANDELTFTVNPNLFKHQVDDQEPKSGDLIYIPMSNDLFEINYVEPYQPFFQAG 160 (246) Q Consensus 81 a~~ieaY~~n~egy~g~~d~~SKFG~~~~DE~tf~IS~~rF~~~~~~~~P~EGDLIYfPm~n~LFEI~~VE~~~PFyQ~G 160 (246) ||+|||||+||+||+|+|+||||||||++|||||+|||+||+++++|+||+|||||||||+|+||||+||||++||||+| T Consensus 81 a~~ieaYl~s~egy~G~gd~~SKFG~~~~DEvt~~Is~~rF~~qv~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~G 160 (252) T protein:vir:10 81 AWKFAAWLNSFESYEGQQSFFSKFGHTQNDEIRISINPGLFKYQVNGKEPALGDLIYMPMDNSLFEITWVEPYSPFYQNG 160 (252) T ss_pred ceeEEEeeehhhccCCccceeeecCceecceEEEEEcCchhhhhccCCCCccccEEEEcCCCcEEEEeccCCCCchhhhC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CceEEEEEEEEeecCCccccccccccccccCCCccCccHHHHHHHhhhhhcCcccccchhhhhccccccccccceecccC Q lcl|NC_012740. 161 KNAMRKIIAEKFVYSGEELRPELQRNEGINVDEFADLDLAPITNLDGLTDINLDQYKEDKQFRSEGQDFIDPFDPINGKG 240 (246) Q Consensus 161 k~~v~~l~ce~F~Ys~E~i~t~~~~id~i~~de~~~~dld~I~~ldg~~d~n~eq~eE~~~~~~e~~~~~e~~~~~~~~g 240 (246) |||||+|+|+||+||||+|+|++++||+|+ ++.+++||+||++||||+||+++|++|++++++||++|||||+|||||| T Consensus 161 kn~~~~l~ce~F~Ys~E~idt~~~~id~Ie-~~~s~ldl~~i~~ldG~~Di~~~~~~e~~~~~~e~~~~~e~~~~i~~~~ 239 (252) T protein:vir:10 161 KNPIRVIVAQKFIYSGEKITPVVQEKPEIE-DMYNGLDLAPLLNLDGMIDQKIDQFAENIAVQQKVKQYAEPFDPISTNS 239 (252) T ss_pred CCeEEEEEEEEEeeCCceecCcccccCccc-hhhhccchHHHhhcCCeeccccccchhhHHHHHhhhhhhccceeecCCC Confidence 999999999999999999999999999999 9999999999999999999999999999999999999999999999999 Q ss_pred -----CccccC Q lcl|NC_012740. 241 -----SPFSDF 246 (246) Q Consensus 241 -----~p~~~~ 246 (246) |||+.- T Consensus 240 ~~~~~~pf~~~ 250 (252) T protein:vir:10 240 FGNFDSPFGKH 250 (252) T ss_pred CCCcCCccccc Confidence 999999 No 6 >protein:vir:98258 Length: 248 # NCBI annotation: gp14 head completion # Family: family:all:1104 # MgeID: mge:1667 # MgeName: RB43 # Cross-refs: genbank:acc:YP_239191;genbank:gi:66391666;genbank:GeneID:3416360 Probab=100.00 E-value=2.2e-135 Score=758.78 Aligned_cols=245 Identities=52% Similarity=0.950 Sum_probs=243.6 Q ss_pred CCcccceeeecCCcchhhhcccccccceeEecCcchhHHHHHHHHHHHHHhcCceEEEeeheeccccccccccccccccc Q lcl|NC_012740. 1 MFNNTLFARLESQKDYENTRQTEILNPYVNFNRHTNTQTLADVMVAEAIQMRGVELYYIPREFVKPDMIFGEDVQSKFTK 80 (246) Q Consensus 1 m~~~~lfa~le~~~~y~~~~~~~~~NpYfN~~g~~~eQ~L~~~LV~EsIqm~G~dv~YlpRe~v~~D~v~~Ed~~skF~~ 80 (246) -||+|||||||+++||++|+++++||||||+|+|++||+|+|+||+|||||||+|||||||++|++|+||+|+++|||++ T Consensus 3 ~~d~~lfa~l~~~~gy~~t~~~~~lnPYfN~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~skF~k 82 (248) T protein:vir:98 3 NWDESLFAQLSTGEGVDRNLKDQVTNPYVNWYKYNPTQQLHDSLTAESIQMKSPDMYYVRREFVNIDKILGEDRESKFTK 82 (248) T ss_pred ccccceeeEecCCcchhhhhhcccccceeeccccCchhHHHHHHHHHHHHHcCceEEEcchhhhcccccccccccccccc Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeeeeechhhhccCCCcceeeecCceeeeeEEEEEcchhhhhhhcCCCCccccEEEecCCCceEEEeeeccCCchhhcC Q lcl|NC_012740. 81 AWKFAAYINSFDGYEGAGNFFQSMGYTANDELTFTVNPNLFKHQVDDQEPKSGDLIYIPMSNDLFEINYVEPYQPFFQAG 160 (246) Q Consensus 81 a~~ieaY~~n~egy~g~~d~~SKFG~~~~DE~tf~IS~~rF~~~~~~~~P~EGDLIYfPm~n~LFEI~~VE~~~PFyQ~G 160 (246) ||+|||||+||+||+|+||||||||||++|||||+|||+||+++++|+||+|||||||||+|+||||+|||| +||||+| T Consensus 83 a~~ieaYl~~~egy~G~~d~~SKFG~~~~DEvt~~Is~~rF~~~~~~~rP~EGDLIYfPm~n~LFEI~~VE~-dPFYQ~G 161 (248) T protein:vir:98 83 SWKIAAYIESYANYEGQRDFFSKFGLSSNDEMTLVLNPRLFAHQTDGGIPVLGDLVYFPMDNSLFEITWVEA-DPFYQFG 161 (248) T ss_pred ceeEEEeeehhhccCCccceeeecCceecceEEEEEccchhhhcCCCCCCccccEEEEcCCCceEEEEecCC-CchhhhC Confidence 999999999999999999999999999999999999999999999999999999999999999999999998 6999999 Q ss_pred CceEEEEEEEEeecCCccccccccccccccCCCccCccHHHHHHHhhhhhcCcccccchhhhhccccccccccceecccC Q lcl|NC_012740. 161 KNAMRKIIAEKFVYSGEELRPELQRNEGINVDEFADLDLAPITNLDGLTDINLDQYKEDKQFRSEGQDFIDPFDPINGKG 240 (246) Q Consensus 161 k~~v~~l~ce~F~Ys~E~i~t~~~~id~i~~de~~~~dld~I~~ldg~~d~n~eq~eE~~~~~~e~~~~~e~~~~~~~~g 240 (246) |+|||+|+|+||+||||+|+|||++||+|++++++++||+||+||||++|||++|++|++++++||++|||||+|||||| T Consensus 162 kn~~~~l~ce~F~Ys~E~~~~~l~~~d~i~~~~~~~iDl~~i~~ldg~~Di~~~~~~e~~~~~~E~~~~~~~~~vin~~g 241 (248) T protein:vir:98 162 DRPQRKINLAKFIYTGEELAPELQRNEGIHIEPDAELDLEPIRNLDGLADINIEQYEEDKEFEREGDEFIESFDVVNGRG 241 (248) T ss_pred CCeEEEEEEEEeeeCCccccccCCCccccCCCCCcchhHHHhhcCccccccCcccccchhhhhhhhhhhhcccceecCcC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CccccC Q lcl|NC_012740. 241 SPFSDF 246 (246) Q Consensus 241 ~p~~~~ 246 (246) |||+.- T Consensus 242 ~~~~~~ 247 (248) T protein:vir:98 242 SPFATL 247 (248) T ss_pred CCccCC Confidence 999999 No 7 >protein:vir:100535 Length: 253 # NCBI annotation: gp14 head completion protein # Family: family:all:1104 # MgeID: mge:1488 # MgeName: 25 # Cross-refs: genbank:acc:YP_656376;genbank:gi:109290127;genbank:GeneID:4156513 Probab=100.00 E-value=7.1e-135 Score=756.03 Aligned_cols=245 Identities=52% Similarity=0.989 Sum_probs=241.9 Q ss_pred CCcccceeeecCCcchhhhcccccccceeEecCcchhHHHHHHHHHHHHHhcCceEEEeeheeccccccccccccccccc Q lcl|NC_012740. 1 MFNNTLFARLESQKDYENTRQTEILNPYVNFNRHTNTQTLADVMVAEAIQMRGVELYYIPREFVKPDMIFGEDVQSKFTK 80 (246) Q Consensus 1 m~~~~lfa~le~~~~y~~~~~~~~~NpYfN~~g~~~eQ~L~~~LV~EsIqm~G~dv~YlpRe~v~~D~v~~Ed~~skF~~ 80 (246) |||+|||||||+++||++|++++|||||||++||++||+|+|+||+|||||||+|||||||++|++|+||+|+++|||++ T Consensus 1 ~~~~~lfa~l~~~~gy~~t~~~~~lNPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~skF~k 80 (253) T protein:vir:10 1 MMDKSLFATLENRSGYQQTNEQNILNPYVKFNRYEGSQALHDTLVAESIQMRGLEFYYLEREYTNLDLLFGEDPNSRFEK 80 (253) T ss_pred CcCccceeEecCCcchhhhhhhccccceeeccccCchhHHHHHHHHHHHHHcCceEEEcchhhccccCcccccccccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeeeeechhhhccCCCcceeeecCceeeeeEEEEEcchhhhhhhcCCCCccccEEEecCCCceEEEeeeccCCchhhcC Q lcl|NC_012740. 81 AWKFAAYINSFDGYEGAGNFFQSMGYTANDELTFTVNPNLFKHQVDDQEPKSGDLIYIPMSNDLFEINYVEPYQPFFQAG 160 (246) Q Consensus 81 a~~ieaY~~n~egy~g~~d~~SKFG~~~~DE~tf~IS~~rF~~~~~~~~P~EGDLIYfPm~n~LFEI~~VE~~~PFyQ~G 160 (246) ||+|||||+||+||+|++|||||||||++|||||+|||+||+++++|+||+|||||||||+|+||||+||||++||||+| T Consensus 81 a~~ieaYl~~~egy~G~gd~~SKFG~~v~DEvt~~Is~~rF~~~v~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~G 160 (253) T protein:vir:10 81 AWKFAAWLNSFESYEGQQSFFSKFGHQQNDEVRISINPGLFKYQVNGKEPKLGDLIYMPMDNSLFEITWVEPYTPFYQMG 160 (253) T ss_pred ceeEEEeeehhhccCCccceeeecCceecceEEEEEcCchhhhhccCCCCccccEEEEcCCCcEEEEeccCCCCchhhhC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CceEEEEEEEEeecCCccccccccccccccCCCccCccHHHHHHHhhhhhcCcccccchhhhhcccccccccccee---- Q lcl|NC_012740. 161 KNAMRKIIAEKFVYSGEELRPELQRNEGINVDEFADLDLAPITNLDGLTDINLDQYKEDKQFRSEGQDFIDPFDPI---- 236 (246) Q Consensus 161 k~~v~~l~ce~F~Ys~E~i~t~~~~id~i~~de~~~~dld~I~~ldg~~d~n~eq~eE~~~~~~e~~~~~e~~~~~---- 236 (246) |+|||+|+|+||+||||+|+||+++||+|+ ++.+.|||++|++|+|++||+++|++|+++++.||++|||||+|| T Consensus 161 kn~~~~l~ce~F~Ys~E~i~tgi~~id~Ie-~~~~~ldl~~i~~l~G~~Di~~~~~~e~~~~~~e~~~~v~~~~~~~~~~ 239 (253) T protein:vir:10 161 KNPIRVIVAQKFIYSGEKLAPQFQEKPEIE-DQYNGLDLEPILNLDGFIDQKINEFGENVQAQNEARPFVEPFDPISTNP 239 (253) T ss_pred CceEEEEEEEEEecCCccccccCccccccc-chhhhhhhhhhhcCCCccccccccccccchhhhccccccccceeccCCC Confidence 999999999999999999999999999999 788999999999999999999999999999999999999999998 Q ss_pred -cccCCccccC Q lcl|NC_012740. 237 -NGKGSPFSDF 246 (246) Q Consensus 237 -~~~g~p~~~~ 246 (246) +|++|||+.- T Consensus 240 ~~g~~spf~~~ 250 (253) T protein:vir:10 240 VNSFNSPFGRH 250 (253) T ss_pred CccccCccccc Confidence 5666999998 No 8 >protein:vir:107937 Length: 257 # NCBI annotation: gp14 neck protein # Family: family:all:1104 # MgeID: mge:2002 # MgeName: JS98 # Cross-refs: genbank:acc:YP_001595290;genbank:gi:161622596;genbank:GeneID:5783656 Probab=100.00 E-value=4.7e-134 Score=751.53 Aligned_cols=246 Identities=61% Similarity=1.105 Sum_probs=243.4 Q ss_pred CCcccceeeecCCcchhhhcccccccceeEecCcchhHHHHHHHHHHHHHhcCceEEEeeheeccccccccccccccccc Q lcl|NC_012740. 1 MFNNTLFARLESQKDYENTRQTEILNPYVNFNRHTNTQTLADVMVAEAIQMRGVELYYIPREFVKPDMIFGEDVQSKFTK 80 (246) Q Consensus 1 m~~~~lfa~le~~~~y~~~~~~~~~NpYfN~~g~~~eQ~L~~~LV~EsIqm~G~dv~YlpRe~v~~D~v~~Ed~~skF~~ 80 (246) -||+|||||||+|+||++|++++|||||||++||.+||+|+++||+|||||||+|||||||++|++|+||+|+++|||++ T Consensus 3 ~~d~~lfa~le~~~gy~~t~~~~~lnPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~skF~k 82 (257) T protein:vir:10 3 TFDSSLFAKLENNTGYANTNETEIMNPFVNFYRHENTQTLADALVAESIQMRGIELYYIPREYVNPDQLFGEDLQNKFTK 82 (257) T ss_pred ccccceeeeecCCcchhhhhhhccccceeecccCCchhHHHHHHHHHHHHHcCceEEEcchhhhcccccccccccccccc Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeeeeechhhhccCCCcceeeecCceeeeeEEEEEcchhhhhhhcCCCCccccEEEecCCCceEEEeeeccCCchhhcC Q lcl|NC_012740. 81 AWKFAAYINSFDGYEGAGNFFQSMGYTANDELTFTVNPNLFKHQVDDQEPKSGDLIYIPMSNDLFEINYVEPYQPFFQAG 160 (246) Q Consensus 81 a~~ieaY~~n~egy~g~~d~~SKFG~~~~DE~tf~IS~~rF~~~~~~~~P~EGDLIYfPm~n~LFEI~~VE~~~PFyQ~G 160 (246) ||+|||||+||+||+|+++||||||||++|||||+|||+||+++++|+||+|||||||||+|+||||+||||++||||+| T Consensus 83 a~~ieaYl~s~egy~G~~d~~SKFG~~v~DEvt~~Is~~rF~~~v~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~G 162 (257) T protein:vir:10 83 AWKFAGYLDSFEGYSGDNTYFSKFGMMVNDEVTITINPNLFKHQCNGTEPVSGDLIYFPMDNSLFEINWVQPYDPFYQVG 162 (257) T ss_pred ceeEEEeeehhhccCCCcceeeecCceecceEEEEEccchhhhhccCCCCccccEEEEcCCCceEEEecccCCCchhhhC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CceEEEEEEEEeecCCccccccccccccccCCCccCccHHHHHHHhhhhhcCcccccchhhhhccccccccccceecccC Q lcl|NC_012740. 161 KNAMRKIIAEKFVYSGEELRPELQRNEGINVDEFADLDLAPITNLDGLTDINLDQYKEDKQFRSEGQDFIDPFDPINGKG 240 (246) Q Consensus 161 k~~v~~l~ce~F~Ys~E~i~t~~~~id~i~~de~~~~dld~I~~ldg~~d~n~eq~eE~~~~~~e~~~~~e~~~~~~~~g 240 (246) |+|||+|+|+||+||||+|.|++++++++.+++..++||+||++||||+|||++|++|++++++||++|||||+|||||| T Consensus 163 kn~~~~l~ce~F~Ys~E~l~pel~~n~~~~V~e~~eldl~~~~~ldG~~di~~~~~~E~~~~~~e~~~fi~p~~~~n~~g 242 (257) T protein:vir:10 163 TNVQRRITATKFIYNGEELRPELQRNEGINIPEFSELDLMPVKNIDGLADISDIQYEEVNEINAEAAEFVHPYVVINGRG 242 (257) T ss_pred CceEEEEEEEEeeeCCcccccccCCcccCCCCCccchhhhhhhhccchhhcCCchhhhHHHHHHhhhhhhccccccCCCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred -----CccccC Q lcl|NC_012740. 241 -----SPFSDF 246 (246) Q Consensus 241 -----~p~~~~ 246 (246) |||++= T Consensus 243 ~~~~~~pf~~~ 253 (257) T protein:vir:10 243 EDAPPTAFDDA 253 (257) T ss_pred CCCCCCcccch Confidence 788764 No 9 >protein:vir:7199 Length: 256 # NCBI annotation: gp14 neck protein # Family: family:all:1104 # MgeID: mge:142 # MgeName: T4 # Cross-refs: genbank:acc:NP_049773;genbank:gi:9632588;genbank:GeneID:1258695 Probab=100.00 E-value=7e-134 Score=750.59 Aligned_cols=246 Identities=60% Similarity=1.114 Sum_probs=242.1 Q ss_pred CCcccceeeecCCcchhhhcccccccceeEecCcchhHHHHHHHHHHHHHhcCceEEEeeheeccccccccccccccccc Q lcl|NC_012740. 1 MFNNTLFARLESQKDYENTRQTEILNPYVNFNRHTNTQTLADVMVAEAIQMRGVELYYIPREFVKPDMIFGEDVQSKFTK 80 (246) Q Consensus 1 m~~~~lfa~le~~~~y~~~~~~~~~NpYfN~~g~~~eQ~L~~~LV~EsIqm~G~dv~YlpRe~v~~D~v~~Ed~~skF~~ 80 (246) -||+|||||||+++||++|++++|||||||++||++||+|+|+||+|||||||+|||||||++|++|+||+|+++|||++ T Consensus 3 ~~d~~lfa~l~~~~gy~~~~~~~~lNPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlpRe~v~~D~i~~Ed~~skF~k 82 (256) T protein:vir:71 3 TYDKNLFAKLENRTGYSQTNETEILNPYVNFNHYKNSQILADVLVAESIQMRGVECYYVPREYVSPDLIFGEDLKNKFTK 82 (256) T ss_pred ccccceeeeecCCcchhhhhhhcccceeeeeeccCchhhHHHHHHHHHHHHcCceEEEechhhccccccccccccccccc Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeeeeechhhhccCCCcceeeecCceeeeeEEEEEcchhhhhhhcCCCCccccEEEecCCCceEEEeeeccCCchhhcC Q lcl|NC_012740. 81 AWKFAAYINSFDGYEGAGNFFQSMGYTANDELTFTVNPNLFKHQVDDQEPKSGDLIYIPMSNDLFEINYVEPYQPFFQAG 160 (246) Q Consensus 81 a~~ieaY~~n~egy~g~~d~~SKFG~~~~DE~tf~IS~~rF~~~~~~~~P~EGDLIYfPm~n~LFEI~~VE~~~PFyQ~G 160 (246) ||+|||||+||+||+|+++||||||||++|||||+|||+||+++++|+||+|||||||||+|+||||+||||++||||+| T Consensus 83 a~~ieaYl~~~egy~G~~d~~SKFG~~~~DEvt~~Is~~rF~~~v~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~G 162 (256) T protein:vir:71 83 AWKFAAYLNSFEGYEGAKSFFSNFGMQVQDEVTLSINPNLFKHQVNGKEPKEGDLIYFPMDNSLFEINWVEPYDPFYQLG 162 (256) T ss_pred ceeEEEEeehhhccCCccccceecCceecceEEEEEccchhhhhhcCCCCccccEEEEcCCCcEEEEEcccCCCchhhhC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CceEEEEEEEEeecCCccccccccccccccCCCccCccHHHHHHHhhhhhcCcccccchhhhhccccccccccceecccC Q lcl|NC_012740. 161 KNAMRKIIAEKFVYSGEELRPELQRNEGINVDEFADLDLAPITNLDGLTDINLDQYKEDKQFRSEGQDFIDPFDPINGKG 240 (246) Q Consensus 161 k~~v~~l~ce~F~Ys~E~i~t~~~~id~i~~de~~~~dld~I~~ldg~~d~n~eq~eE~~~~~~e~~~~~e~~~~~~~~g 240 (246) |||||+|+|+||+||||+|+|||+++|+|++++++.+||++|++|+|++|+++++++|+++|++||++|+|||+|||||| T Consensus 163 kn~~~~l~ce~F~Ys~E~~~~~l~~~d~i~~~e~~eldl~~i~~ldg~~di~~~~~~e~~~i~~e~~~~ve~~~~in~~G 242 (256) T protein:vir:71 163 QNAIRKITAGKFIYSGEEINPVLQKNEGINIPEFSELELNAVRNLNGIHDINIDQYAEVDQINSEAKEYVEPYVVVNNRG 242 (256) T ss_pred CCeEEEEEEEEEecCCceecccCCCCCcccCCcccccccccccccCcccccccccccchhhhhhccccccccceeecCCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred Cc-----ccc-C Q lcl|NC_012740. 241 SP-----FSD-F 246 (246) Q Consensus 241 ~p-----~~~-~ 246 (246) +| |++ | T Consensus 243 ~~~~~~pfd~~~ 254 (256) T protein:vir:71 243 KSFESSPFDNDF 254 (256) T ss_pred CCCcCCCccccc Confidence 55 443 4 No 10 >protein:vir:103452 Length: 256 # NCBI annotation: head completion # Family: family:all:1104 # MgeID: mge:1542 # MgeName: RB32 # Cross-refs: genbank:acc:YP_803104;genbank:gi:116326384;genbank:GeneID:4405481 Probab=100.00 E-value=1.1e-133 Score=749.62 Aligned_cols=246 Identities=61% Similarity=1.123 Sum_probs=242.1 Q ss_pred CCcccceeeecCCcchhhhcccccccceeEecCcchhHHHHHHHHHHHHHhcCceEEEeeheeccccccccccccccccc Q lcl|NC_012740. 1 MFNNTLFARLESQKDYENTRQTEILNPYVNFNRHTNTQTLADVMVAEAIQMRGVELYYIPREFVKPDMIFGEDVQSKFTK 80 (246) Q Consensus 1 m~~~~lfa~le~~~~y~~~~~~~~~NpYfN~~g~~~eQ~L~~~LV~EsIqm~G~dv~YlpRe~v~~D~v~~Ed~~skF~~ 80 (246) -||+|||||||+++||++|++++|||||||++||++||+|+|+||+|||||||+|||||||++|++|+||+|+++|||++ T Consensus 3 ~~d~~lfa~l~~~~gy~~~~~~~~lNPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~skF~k 82 (256) T protein:vir:10 3 TYDKNLFAKLENHTGYSQTNETEILNPYVNFNHYKNSQILADVLVAESIQMRGVECYYVPREYVSPDLIFGEDLKNKFTK 82 (256) T ss_pred ccccceeeeecCCcchhhhhhhcccceeeeeeccCchhhHHHHHHHHHHHHcCceEEEechhhccccccccccccccccc Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeeeeechhhhccCCCcceeeecCceeeeeEEEEEcchhhhhhhcCCCCccccEEEecCCCceEEEeeeccCCchhhcC Q lcl|NC_012740. 81 AWKFAAYINSFDGYEGAGNFFQSMGYTANDELTFTVNPNLFKHQVDDQEPKSGDLIYIPMSNDLFEINYVEPYQPFFQAG 160 (246) Q Consensus 81 a~~ieaY~~n~egy~g~~d~~SKFG~~~~DE~tf~IS~~rF~~~~~~~~P~EGDLIYfPm~n~LFEI~~VE~~~PFyQ~G 160 (246) ||+|||||+||+||+|+++||||||||++|||||+|||+||+++++|+||+|||||||||+|+||||+||||++||||+| T Consensus 83 a~~ieaYl~~~egy~G~~d~~SKFG~~~~DEvt~~Is~~rF~~~v~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~G 162 (256) T protein:vir:10 83 AWKFAAYLNSFEGYEGAKSFFSNFGMQVQDEVTLSINPNLFKHQVNGKEPKEGDLIYFPMDNSLFEINWVEPYDPFYQLG 162 (256) T ss_pred ceeEEEEeehhhccCCccccceecCceecceEEEEEcCchhhhhccCCCCccccEEEEcCCCcEEEEEeccCCCchhhhC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CceEEEEEEEEeecCCccccccccccccccCCCccCccHHHHHHHhhhhhcCcccccchhhhhccccccccccceecccC Q lcl|NC_012740. 161 KNAMRKIIAEKFVYSGEELRPELQRNEGINVDEFADLDLAPITNLDGLTDINLDQYKEDKQFRSEGQDFIDPFDPINGKG 240 (246) Q Consensus 161 k~~v~~l~ce~F~Ys~E~i~t~~~~id~i~~de~~~~dld~I~~ldg~~d~n~eq~eE~~~~~~e~~~~~e~~~~~~~~g 240 (246) |||||+|+|+||+||||+|+|||++||+|++++++.|||+||++|||++|+++++++|++++++||++|++||+|||||| T Consensus 163 kn~~~~l~ce~F~Ys~E~~~~~l~~~d~i~~~~~~eldl~pi~~ldG~~di~~~~~~e~~~~~~e~~~~v~~~~~in~~G 242 (256) T protein:vir:10 163 QNAIRKITAGKFIYSGEEINPVLQKNEGINIPEFSELELNPVRNLNGIHDINIDQYAEVDQINSEAKEYVEPYVVVNNRG 242 (256) T ss_pred CCeEEEEEEEEEeeCCceecccCCCCccccCCccchhhhccccccccccccCccccccchhhhhccccccccceEecCCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred Cc-----ccc-C Q lcl|NC_012740. 241 SP-----FSD-F 246 (246) Q Consensus 241 ~p-----~~~-~ 246 (246) +| |++ | T Consensus 243 ~~~~~~pfd~~~ 254 (256) T protein:vir:10 243 KSFESSPFDNDF 254 (256) T ss_pred CCCcCCCccccc Confidence 65 443 4 No 11 >protein:vir:106285 Length: 262 # NCBI annotation: gp14 neck protein # Family: family:all:1104 # MgeID: mge:1474 # MgeName: Aeh1 # Cross-refs: genbank:acc:NP_944101;genbank:gi:38640145;genbank:GeneID:2658033 Probab=100.00 E-value=5.2e-133 Score=745.79 Aligned_cols=243 Identities=47% Similarity=0.819 Sum_probs=238.5 Q ss_pred CCcccceeeecCCcchhhhcccccccceeEecCcchhHHHHHHHHHHHHHhcCceEEEeeheeccccccccccccccccc Q lcl|NC_012740. 1 MFNNTLFARLESQKDYENTRQTEILNPYVNFNRHTNTQTLADVMVAEAIQMRGVELYYIPREFVKPDMIFGEDVQSKFTK 80 (246) Q Consensus 1 m~~~~lfa~le~~~~y~~~~~~~~~NpYfN~~g~~~eQ~L~~~LV~EsIqm~G~dv~YlpRe~v~~D~v~~Ed~~skF~~ 80 (246) -||+|||||||+|+||++|++++|||||||+++|++||+|+++||+|||||||+|||||||++|++|+||+|+++|||++ T Consensus 3 ~~d~~lfa~le~~~gy~~~~~~~vlNPYfN~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlpRe~v~~D~i~gEd~~SkF~k 82 (262) T protein:vir:10 3 ARNQSMFAQLETGAGYNKTYQTNVLNPYVNKHEYEPTLSLHEMLVAESIQMTGVEMYYIRREFVNFDRIFGEDMQSKFKK 82 (262) T ss_pred ccccceeeEecCCCcccCcchhccccceeccCCcCchhhHHHHHHHHHHHHcCceEEEcchhhhcccccccccccccccc Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeeeeechhhhccCCCcceeeecCceeeeeEEEEEcchhhhhhhcCCCCccccEEEecCCCceEEEeeeccCCchhhcC Q lcl|NC_012740. 81 AWKFAAYINSFDGYEGAGNFFQSMGYTANDELTFTVNPNLFKHQVDDQEPKSGDLIYIPMSNDLFEINYVEPYQPFFQAG 160 (246) Q Consensus 81 a~~ieaY~~n~egy~g~~d~~SKFG~~~~DE~tf~IS~~rF~~~~~~~~P~EGDLIYfPm~n~LFEI~~VE~~~PFyQ~G 160 (246) ||+|||||+||+||+|+||||||||||++|||||+|||+||+++++|+||+|||||||||+|+||||+||||++||||+| T Consensus 83 a~~ieaYl~s~egy~G~~d~~SKFG~~v~DEvt~~Is~~rF~~~~~~~rP~EGDLIYfPl~nsLFEI~~VE~~~PFYQ~G 162 (262) T protein:vir:10 83 TYKVAMYLESFDEYSGQRDFFSKFGMQVNDEITMSVSPKLFETQADGDRVKEGDLIYFPLNNSLFEVTWVEPSSPVVKRE 162 (262) T ss_pred ceeEEEeeehhhccCCccceeeecCceecceEEEEEccchhhhhhcCCCCccccEEEEcCCCceEEEeeccCCCchhhhC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CceEEEEEEEEeecCCccccccccccccccCCCccCccHHHHHHHhhhhhcCcccccchhhhhccccccccccceecccC Q lcl|NC_012740. 161 KNAMRKIIAEKFVYSGEELRPELQRNEGINVDEFADLDLAPITNLDGLTDINLDQYKEDKQFRSEGQDFIDPFDPINGKG 240 (246) Q Consensus 161 k~~v~~l~ce~F~Ys~E~i~t~~~~id~i~~de~~~~dld~I~~ldg~~d~n~eq~eE~~~~~~e~~~~~e~~~~~~~~g 240 (246) |+|||+|+|+||+||||+|+|+|++||+|+.+.. +|++|++|||++|||++|++|+++++.||++||+||+||||+| T Consensus 163 kn~~~~l~ce~F~Ys~E~i~~~i~~id~i~~e~~---~l~~i~~lDg~~di~~~q~~e~~~~~~e~~~fv~~~d~v~~~g 239 (262) T protein:vir:10 163 QLAKYKVTAQKFIYSGEEIKPEFDPNRYVLGEDD---PLSQIKALDGRADISLDEFAEDDAFNEEAEDFVVEFDNIIGNG 239 (262) T ss_pred CceEEEEEEEEEeeCCccccccCccccccccccc---cccccccccceeecccccccchhHHhhhhhhhcchhcccCCCC Confidence 9999999999999999999999999999975544 7889999999999999999999999999999999999999999 Q ss_pred CccccC Q lcl|NC_012740. 241 SPFSDF 246 (246) Q Consensus 241 ~p~~~~ 246 (246) |||++- T Consensus 240 sp~~~~ 245 (262) T protein:vir:10 240 TPIAEH 245 (262) T ss_pred Cccccc Confidence 998776 No 12 >protein:vir:5658 Length: 278 # NCBI annotation: gp14 # Family: family:all:1104 # MgeID: mge:119 # MgeName: KVP40 # Cross-refs: genbank:acc:NP_899597;genbank:gi:34419584;genbank:GeneID:2545699 Probab=100.00 E-value=9.2e-126 Score=706.08 Aligned_cols=244 Identities=41% Similarity=0.767 Sum_probs=232.8 Q ss_pred CCcc---cceeeecCCcchhhhcccccccceeEecCcchhHHHHHHHHHHHHHhcCceEEEeeheecccccccccccccc Q lcl|NC_012740. 1 MFNN---TLFARLESQKDYENTRQTEILNPYVNFNRHTNTQTLADVMVAEAIQMRGVELYYIPREFVKPDMIFGEDVQSK 77 (246) Q Consensus 1 m~~~---~lfa~le~~~~y~~~~~~~~~NpYfN~~g~~~eQ~L~~~LV~EsIqm~G~dv~YlpRe~v~~D~v~~Ed~~sk 77 (246) -||+ |||||||+|+||++|++++|||||||++||++||+|+|+||+|||||||+|||||||++|++|+||+|+++|| T Consensus 3 ~~d~~~~~lfa~l~~~~gy~~~~~~~~~NpYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~sk 82 (278) T protein:vir:56 3 AYDTNTGGMFAKLESQKGYDQIYNNHLVNPYFNWVNHTNEQNLTDMLVAESIINRGVECVYLRREMEKVDLVFGEDPMSK 82 (278) T ss_pred cccccCceEEEEecCCcccchhcccccccceeeccCCCchhHHHHHHHHHHHHHcCceEEEcchhhhccccccccccccc Confidence 7999 7999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cccceeeeeechhhhccCCCcceeeecCceeeeeEEEEEcchhhhhhhcCCCCccccEEEecCCCceEEEeeeccCCchh Q lcl|NC_012740. 78 FTKAWKFAAYINSFDGYEGAGNFFQSMGYTANDELTFTVNPNLFKHQVDDQEPKSGDLIYIPMSNDLFEINYVEPYQPFF 157 (246) Q Consensus 78 F~~a~~ieaY~~n~egy~g~~d~~SKFG~~~~DE~tf~IS~~rF~~~~~~~~P~EGDLIYfPm~n~LFEI~~VE~~~PFy 157 (246) |++||+|||||+||+||+|+++||||||||++|||||+|||+||+++++++||+|||||||||+|+||||+||||++||| T Consensus 83 F~ka~~ieaYl~~~egy~G~~d~~SKFG~~~~DEvt~~Is~~rF~~~~~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFY 162 (278) T protein:vir:56 83 FTQNFRMSLYVESFEGWDGDGDWYSKFGFQVNDEMNVCINPKLFAQQGDGKQPLMGDLIYFPLANSLFEISWIEREDPWY 162 (278) T ss_pred cccceeEEEEeehhhccCCCceeeeecCceecceEEEEEccchhhhcCCCCCCccccEEEEcCCCcEEEEEccCCCCchh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hcCCceEEEEEEEEeecCCcccccc-----ccccccccCCCccC-----ccHHHHHHHhhhhhcCcccccchhhhhcccc Q lcl|NC_012740. 158 QAGKNAMRKIIAEKFVYSGEELRPE-----LQRNEGINVDEFAD-----LDLAPITNLDGLTDINLDQYKEDKQFRSEGQ 227 (246) Q Consensus 158 Q~Gk~~v~~l~ce~F~Ys~E~i~t~-----~~~id~i~~de~~~-----~dld~I~~ldg~~d~n~eq~eE~~~~~~e~~ 227 (246) |+||+|||+|+|+||+||||+|+|| +++++.| .+..+ +|+++|++|+|++|+++++++|.+++++||+ T Consensus 163 Q~Gk~~~~~l~ce~F~Ys~E~~dtg~pe~~~d~i~~i--~ef~e~~~~~ld~~~~~~l~G~~di~~~~~~e~~~~~~e~~ 240 (278) T protein:vir:56 163 MNGVLPMRKMKMTKFVYSGEEINLEKPEAVIDSIDDI--LNFGEDTDEMIDIDKINALDGRWDIGIEQGAEITQIEDEVD 240 (278) T ss_pred hhCCceEEEEEEEEeeecCceecccCCccccccccch--hhcccchhhcccccccccccchhcccchhhhhhhhhhhccc Confidence 9999999999999999999999987 5555555 33333 9999999999999999999999999999999 Q ss_pred ccccccceecccC-------------------CccccC Q lcl|NC_012740. 228 DFIDPFDPINGKG-------------------SPFSDF 246 (246) Q Consensus 228 ~~~e~~~~~~~~g-------------------~p~~~~ 246 (246) .|++|++|||++| +||++| T Consensus 241 ~f~~~~~v~~~~~~~~~t~~~n~~~g~~v~~~~~~D~f 278 (278) T protein:vir:56 241 KFYESEQVVPSGSDVQPTDPRNATIGFNVNNSNPFDSF 278 (278) T ss_pred eeeecCceecCCCCccccCcccccCCCcCccccccccC Confidence 9999999998876 466666 No 13 >protein:vir:104476 Length: 308 # NCBI annotation: gp14 # Family: family:all:1104 # MgeID: mge:1548 # MgeName: P-SSM4 # Cross-refs: genbank:acc:YP_214650;genbank:gi:61806291;genbank:GeneID:3294531 Probab=100.00 E-value=3.7e-113 Score=636.98 Aligned_cols=229 Identities=28% Similarity=0.490 Sum_probs=215.8 Q ss_pred hhcccccc----------cceeEecCcchhHHHHHHHHHHHHHhcCceEEEeeheecccccccccccccccccceeeeee Q lcl|NC_012740. 18 NTRQTEIL----------NPYVNFNRHTNTQTLADVMVAEAIQMRGVELYYIPREFVKPDMIFGEDVQSKFTKAWKFAAY 87 (246) Q Consensus 18 ~~~~~~~~----------NpYfN~~g~~~eQ~L~~~LV~EsIqm~G~dv~YlpRe~v~~D~v~~Ed~~skF~~a~~ieaY 87 (246) -+++++.+ |||||+|||++||+|+|+||+|||||||+|||||||++|++|+||+|+++|||++||+|||| T Consensus 1 ~~~~~~~~~py~~~~~~~~~~~n~~~~~~eQ~L~e~LV~EsIqm~G~dvyYlpRe~v~~D~i~~Ed~~skF~~a~~ieaY 80 (308) T protein:vir:10 1 MAIQNSPAQDYVQSDYSNAGRLKANASSQEQKFIENLVVESIEIYGQDIYYVPRTIVNRDSVFEEDSDGKFESAKAIRAY 80 (308) T ss_pred CccccCCCCCcccccccccceEEEeccCchhHHHHHHHHHHHHhcCceEEEechhhcccccccccccccccccceeEEEE Confidence 34444444 45569999999999999999999999999999999999999999999999999999999999 Q ss_pred chhhhccCCCcceeeecCceeeeeEEEEEcchhhhhhhcC-------CCCccccEEEecCCCceEEEeeeccCCchhhcC Q lcl|NC_012740. 88 INSFDGYEGAGNFFQSMGYTANDELTFTVNPNLFKHQVDD-------QEPKSGDLIYIPMSNDLFEINYVEPYQPFFQAG 160 (246) Q Consensus 88 ~~n~egy~g~~d~~SKFG~~~~DE~tf~IS~~rF~~~~~~-------~~P~EGDLIYfPm~n~LFEI~~VE~~~PFyQ~G 160 (246) |+||+||+|+++||||||||++|||||+|||+||++++++ +||+|||||||||+|+|||||||||++||||+| T Consensus 81 ~~~~egy~g~~~~~SKFG~~~~DE~t~~is~~rF~~~v~~~~~~~~~~rP~EGDLIYfPl~~~lFEI~~VE~~~PFyQ~G 160 (308) T protein:vir:10 81 VNNVEGWEGQGELLSKFGIRIEDKTTFIFSREKFKEHVDDSVTLNVEGRPNEGDLIWFPITKHLFEIKFVEVERPFYQLG 160 (308) T ss_pred eechhccCCCcceeeecCceecceEEEEEccchhhhhcCCccccccCCCCccccEEEecCCCceEEEEcccCCCchhhhC Confidence 9999999999999999999999999999999999999998 499999999999999999999999999999999 Q ss_pred CceEEEEEEEEeecCCccccccccccccccCCCccCccHHHHHHHhhhhhcCcccccchhhhhcccccc---ccccceec Q lcl|NC_012740. 161 KNAMRKIIAEKFVYSGEELRPELQRNEGINVDEFADLDLAPITNLDGLTDINLDQYKEDKQFRSEGQDF---IDPFDPIN 237 (246) Q Consensus 161 k~~v~~l~ce~F~Ys~E~i~t~~~~id~i~~de~~~~dld~I~~ldg~~d~n~eq~eE~~~~~~e~~~~---~e~~~~~~ 237 (246) |||||+|+|+||+||||+|+|||++||+|++++.+.|+|++|++++|++|+++.++++..++..||+.| +++..|+| T Consensus 161 k~~~~~l~ce~F~Ys~E~~~~~i~~iD~i~~~~~~~LdL~pIs~l~G~fdInE~v~gest~itAEv~~wds~v~~ItV~N 240 (308) T protein:vir:10 161 RNYVWECQCELFEYSDEEINTGITELDAIETAFANAITVGLVAGGTGTFTVGETITGGTSNVTAEVKSFDASTRTLIVIN 240 (308) T ss_pred CceEEEEEEEEEeeCCcccccCCccccccccccccceeeeeeccCCccccccceecccccceEEEEEEecCCceEEEEEe Confidence 999999999999999999999999999999999999999999999999999999999999999999999 88899999 Q ss_pred ccCCccccC Q lcl|NC_012740. 238 GKGSPFSDF 246 (246) Q Consensus 238 ~~g~p~~~~ 246 (246) ++|++=.-= T Consensus 241 ~gGsftspp 249 (308) T protein:vir:10 241 RSGTFTVPE 249 (308) T ss_pred CCCceeeCc Confidence 998432110 No 14 >protein:vir:106986 Length: 292 # NCBI annotation: neck protein gp14 # Family: family:all:1104 # MgeID: mge:1459 # MgeName: S-PM2 # Cross-refs: genbank:acc:YP_195128;genbank:gi:58532905;uniprot:Q5GQV9;genbank:GeneID:3260483 Probab=100.00 E-value=4e-108 Score=609.37 Aligned_cols=223 Identities=22% Similarity=0.435 Sum_probs=213.5 Q ss_pred ccccceeE--ecCcchhHHHHHHHHHHHHHhcCceEEEeeheecccccccccccccccccceeeeeechhhhccCCCcce Q lcl|NC_012740. 23 EILNPYVN--FNRHTNTQTLADVMVAEAIQMRGVELYYIPREFVKPDMIFGEDVQSKFTKAWKFAAYINSFDGYEGAGNF 100 (246) Q Consensus 23 ~~~NpYfN--~~g~~~eQ~L~~~LV~EsIqm~G~dv~YlpRe~v~~D~v~~Ed~~skF~~a~~ieaY~~n~egy~g~~d~ 100 (246) --|||||| +|||++||+|+|+||+|||||||+|||||||++|+ |++|+|+++|||++||+|||||+||+||+|++|| T Consensus 1 m~~npyfn~~~~~~~~eQ~L~~~LV~Esiq~~G~dvyYlpRe~~~-d~~~~E~~~skF~~a~~ieaY~~~~eg~~g~~~~ 79 (292) T protein:vir:10 1 MPTSPYFPSYYSGYSGEQNLVQDLVDEQIKLFGTDIYYLPRTILR-DNTLDDVIYNKFERQFQVEMLLQNVEGFGSPSEF 79 (292) T ss_pred CCcCccccccccCcCchhHHHHHHHHHHHHhcCceEEEechhhhc-ccccccccccccccceeEEEEeechhccCCCcce Confidence 56999999 68999999999999999999999999999999999 9999999999999999999999999999999999 Q ss_pred eeecCceeeeeEEEEEcchhhhhhhcC------CCCccccEEEecCCCceEEEeeeccCCchhhcCCceEEEEEEEEeec Q lcl|NC_012740. 101 FQSMGYTANDELTFTVNPNLFKHQVDD------QEPKSGDLIYIPMSNDLFEINYVEPYQPFFQAGKNAMRKIIAEKFVY 174 (246) Q Consensus 101 ~SKFG~~~~DE~tf~IS~~rF~~~~~~------~~P~EGDLIYfPm~n~LFEI~~VE~~~PFyQ~Gk~~v~~l~ce~F~Y 174 (246) |||||||++|||||+|||+||++++++ +||+|||||||||+|+|||||||||++||||+||+|||+|+|+||+| T Consensus 80 ~sKFG~~~~De~t~~is~~~f~~~~~~~~~~~~~~P~eGDLIYfPl~~~lFEI~~ve~~~PfyQ~gk~~~~~l~~~~F~Y 159 (292) T protein:vir:10 80 ISKFGLRITDEVRFIVSQRRWDEEAVNYDLNVNGRPNEGDLLYFPLTQDIYEIKFVEREDPFYQLGKNYFYIMTAEIYEY 159 (292) T ss_pred eeecCceecceEEEEEccchhhhhcCcccccccCCCccccEEEEcCCCcEEEEEcccCCCchhhhCCceEEEEEEEEEee Confidence 999999999999999999999999998 89999999999999999999999999999999999999999999999 Q ss_pred CCccccccccccccccCCCccCccHHHHHHHhhhhhcCcccccchhhhhcccccccc---ccceecccCCcc------cc Q lcl|NC_012740. 175 SGEELRPELQRNEGINVDEFADLDLAPITNLDGLTDINLDQYKEDKQFRSEGQDFID---PFDPINGKGSPF------SD 245 (246) Q Consensus 175 s~E~i~t~~~~id~i~~de~~~~dld~I~~ldg~~d~n~eq~eE~~~~~~e~~~~~e---~~~~~~~~g~p~------~~ 245 (246) |+|+|+|||++||+|++.....|+|++++++.|.++++..+++|...++.+|+.|.+ ++.|+|++||.= +. T Consensus 160 s~E~idtgl~eiD~i~~~~sseLdL~pi~~g~G~f~inE~vtge~sg~~AEv~sw~~~t~~L~V~n~~GsF~T~e~i~G~ 239 (292) T protein:vir:10 160 GSDNISTGVEEIDELETLFSSAIAIALSIGGTGDFDLGEIVTGGISGTEAEVKSWDSSSRILQVINRTGTFEEGESVTGN 239 (292) T ss_pred cCceecCCCCcccccccccccccceeecccCCccccCCceeeecccceEEEEEEccCCCceEEEEeCccccccCceeeEe Confidence 999999999999999999999999999999999999999999999999999999955 777899997531 11 Q ss_pred C Q lcl|NC_012740. 246 F 246 (246) Q Consensus 246 ~ 246 (246) - T Consensus 240 ~ 240 (292) T protein:vir:10 240 D 240 (292) T ss_pred e Confidence 1 No 15 >protein:vir:103005 Length: 390 # NCBI annotation: gp110 # Family: family:all:1104 # MgeID: mge:1583 # MgeName: Syn9 # Cross-refs: genbank:acc:YP_717777;genbank:gi:113200614;genbank:GeneID:4239009 Probab=100.00 E-value=6.1e-95 Score=537.11 Aligned_cols=238 Identities=26% Similarity=0.458 Sum_probs=193.8 Q ss_pred eeecCCcchhhhcccccccceeEecCcchhHHHHHHHHHHHHHhcCceEEEeeheecccccccccccccccccceeeeee Q lcl|NC_012740. 8 ARLESQKDYENTRQTEILNPYVNFNRHTNTQTLADVMVAEAIQMRGVELYYIPREFVKPDMIFGEDVQSKFTKAWKFAAY 87 (246) Q Consensus 8 a~le~~~~y~~~~~~~~~NpYfN~~g~~~eQ~L~~~LV~EsIqm~G~dv~YlpRe~v~~D~v~~Ed~~skF~~a~~ieaY 87 (246) -...+.++|++++..+++|||||+|||.+||+|+|+||+|||||||+||||||||+|++|+||+||++|||+|||+|||| T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~~~lv~e~i~~~g~~~~y~~r~~~~~d~~~~e~~~~~f~~~~~~~~y 80 (390) T protein:vir:10 1 MTYSNDPPNNCIQSDYTSSCRLNLNGSAQEQTFMENLIVESIELYGQNVYYLPRIYVNRDTILNEVETSRFEQALSVRAY 80 (390) T ss_pred CeecCCCcccceecceeeccEEEEeccCchhHHHHHHHHHHhHhcCceEEEechheeccccccccccccccccceEEEEE Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred chhhhccCCCcceeeecCceeeeeEEEEEcchhhhhhhcC-------CCCccccEEEecCCCceEEEeeeccCCchhhcC Q lcl|NC_012740. 88 INSFDGYEGAGNFFQSMGYTANDELTFTVNPNLFKHQVDD-------QEPKSGDLIYIPMSNDLFEINYVEPYQPFFQAG 160 (246) Q Consensus 88 ~~n~egy~g~~d~~SKFG~~~~DE~tf~IS~~rF~~~~~~-------~~P~EGDLIYfPm~n~LFEI~~VE~~~PFyQ~G 160 (246) |+|||||+|++|||||||||++|||||+|||+||++++++ +||+|||||||||+++||||+||||++||||+| T Consensus 81 ~~~~~~~~~~~~~~skfg~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~p~egdliy~p~~~~lfei~~ve~~~p~yq~G 160 (390) T protein:vir:10 81 VNNVEGWEGQGDLLSKFGVRIEDKTTFIFSRKKFTTAVDDNAVLNVEGRPNEGDLIWFPATRHLFEIKFVEAERPFYQLG 160 (390) T ss_pred eechhccCCccceeeecCceecceEEEEECCcchhhhhCCcccccccCCCCCCceEEecCCCCEEEEEecCCCCCceEcc Confidence 9999999999999999999999999999999999999997 599999999999999999999999999999999 Q ss_pred CceEEEEEEEEeecCCccccccccccccccCCCccCccHHHHHHHhhhhhcCcccccchhhhhcc---ccccccccceec Q lcl|NC_012740. 161 KNAMRKIIAEKFVYSGEELRPELQRNEGINVDEFADLDLAPITNLDGLTDINLDQYKEDKQFRSE---GQDFIDPFDPIN 237 (246) Q Consensus 161 k~~v~~l~ce~F~Ys~E~i~t~~~~id~i~~de~~~~dld~I~~ldg~~d~n~eq~eE~~~~~~e---~~~~~e~~~~~~ 237 (246) |+|+|+|+|++|+||+|++++++++++.+.....+...+..+..--+-........-..-..... ...=|....| . T Consensus 161 ~nyt~~i~a~lf~ySge~iat~~seid~I~~~~~~~v~~~~~t~g~~~~t~~~~v~~~g~ga~~~a~v~~g~Vt~vtI-t 239 (390) T protein:vir:10 161 KGYVWECQCELFEYSDEDLDTGVAEIDAIETAFANAIKLVMDAGGTGAFTVGEEIVGDLYLATATATISGDAVDAVTV-T 239 (390) T ss_pred CceeeeeEEeeeccCCccccccccccccccccccceeeeeeccCCcccccccceeeecCcceeEEEEecCCeEEEEEE-e Confidence 99999999999999999999999999999777665555444433322222111110000000000 0011222222 2 Q ss_pred ccCCccc-------cC Q lcl|NC_012740. 238 GKGSPFS-------DF 246 (246) Q Consensus 238 ~~g~p~~-------~~ 246 (246) +.|+-+. -+ T Consensus 240 n~GsGYt~~~~ptVti 255 (390) T protein:vir:10 240 DGGEHYKSALPPTVTI 255 (390) T ss_pred eCCCCcccCceeEEEe Confidence 2232111 11 No 16 >protein:vir:104739 Length: 470 # NCBI annotation: T4-like neck protein # Family: family:all:1104 # MgeID: mge:1630 # MgeName: P-SSM2 # Cross-refs: genbank:acc:YP_214353;genbank:gi:61805993;genbank:GeneID:3294259 Probab=100.00 E-value=1.4e-83 Score=474.90 Aligned_cols=211 Identities=30% Similarity=0.580 Sum_probs=169.8 Q ss_pred ccccceeEecCcchhHHHHHHHHHHHHHhcCceEEEeeheecccccccccccccccccceeeeeechhhhccCCCcceee Q lcl|NC_012740. 23 EILNPYVNFNRHTNTQTLADVMVAEAIQMRGVELYYIPREFVKPDMIFGEDVQSKFTKAWKFAAYINSFDGYEGAGNFFQ 102 (246) Q Consensus 23 ~~~NpYfN~~g~~~eQ~L~~~LV~EsIqm~G~dv~YlpRe~v~~D~v~~Ed~~skF~~a~~ieaY~~n~egy~g~~d~~S 102 (246) -.|||||| |||.+||+|+|+||+|||||||+||||||||+|++|+||+||++|||+|||+|||||+|||||+|+++|+| T Consensus 1 ~~~~~~~~-~~~~~~~~~~~~~~~e~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (470) T protein:vir:10 1 MALNPFFL-QGTSSEQRLTQDLINEHLKIYGVEVTYIPRKYVNTKSIIEEVQSSKFDDNFAIEAYVNTYEGYGGQGDVLT 79 (470) T ss_pred CcccceeE-cCCCchhHHHHHHHHHHhHhccceEEEechhhcccccccccccccccccceeEEEEeecccCcCCcceeee Confidence 78999997 99999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ecCceeeeeEEEEEcchhhh------------------hhhcCCCCccccEEEecCCCceEEEeeeccCCchhhcCCceE Q lcl|NC_012740. 103 SMGYTANDELTFTVNPNLFK------------------HQVDDQEPKSGDLIYIPMSNDLFEINYVEPYQPFFQAGKNAM 164 (246) Q Consensus 103 KFG~~~~DE~tf~IS~~rF~------------------~~~~~~~P~EGDLIYfPm~n~LFEI~~VE~~~PFyQ~Gk~~v 164 (246) |||++++|||+|+|||+||+ +|+...||+|||||||||+|+||||+|||++.||||+||+|+ T Consensus 80 ~fg~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~p~egdl~~~p~~~~~~~i~~ve~~~p~~~~G~~~~ 159 (470) T protein:vir:10 80 KFGMSIRDEVTLTISKERFEDFIAPFMAGLDDGPGGNEEVILATRPREGDLVFFPLGSRLFEVKFVEHEDPFYQLGKNYV 159 (470) T ss_pred ecCcccceEEEEEECCccccccccchhhcccCcccccccccccCCcccccEEEecCCCCEEEEEecCCCCcchhcCccee Confidence 99999999999999999995 556679999999999999999999999999999999999999 Q ss_pred EEEEEEEeecCCccccccccccccccCCCccCccHHHHHHHhhhhhcCcccccchhhhhccccccccccceecccCCccc Q lcl|NC_012740. 165 RKIIAEKFVYSGEELRPELQRNEGINVDEFADLDLAPITNLDGLTDINLDQYKEDKQFRSEGQDFIDPFDPINGKGSPFS 244 (246) Q Consensus 165 ~~l~ce~F~Ys~E~i~t~~~~id~i~~de~~~~dld~I~~ldg~~d~n~eq~eE~~~~~~e~~~~~e~~~~~~~~g~p~~ 244 (246) |+|+|++|+|++|.+++++..++............. +.+. ... ...-- ..+..-+-... +++.|+=+. T Consensus 160 ~~it~~~f~ysge~~s~~v~~~~~~~~~~g~~~t~t----~~~~-g~~---~~~t~---~~~~g~vt~it-itn~Gsgyt 227 (470) T protein:vir:10 160 YQLKCELFEYEDEVIDTSIDAIDTVVQDDGYISKLQ----LVGI-GRT---AEVAA---SIGVGYVREIF-LNNDGSGFT 227 (470) T ss_pred EEeeeceeEecCCccccceecccccccccccceeee----ecCC-Ccc---ceeee---eecceeeeEeE-eecccccee Confidence 999999999999999999999988875443322211 1110 000 00000 00001111111 122221111 Q ss_pred -----cC Q lcl|NC_012740. 245 -----DF 246 (246) Q Consensus 245 -----~~ 246 (246) -+ T Consensus 228 ~~ptVti 234 (470) T protein:vir:10 228 SPPTITF 234 (470) T ss_pred ccCEEEE Confidence 11 No 17 >protein:vir:1385 Length: 107 # NCBI annotation: Gp8 protein # Family: family:all:3858 # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612837;genbank:gi:20065971;genbank:GeneID:935786 Probab=47.92 E-value=0.69 Score=21.48 Aligned_cols=106 Identities=12% Similarity=0.144 Sum_probs=76.6 Q ss_pred hcCc-eEEEeeheecccccccccccccccccceeeeeechhhhccCCCcceeeecCceeeeeEEEEEcchhhhhhhcCCC Q lcl|NC_012740. 51 MRGV-ELYYIPREFVKPDMIFGEDVQSKFTKAWKFAAYINSFDGYEGAGNFFQSMGYTANDELTFTVNPNLFKHQVDDQE 129 (246) Q Consensus 51 m~G~-dv~YlpRe~v~~D~v~~Ed~~skF~~a~~ieaY~~n~egy~g~~d~~SKFG~~~~DE~tf~IS~~rF~~~~~~~~ 129 (246) |.+- -|....++- ..|.. |... ..+...+++-|.+....| .++++--+++..-.++|+|. |..-++..+ T Consensus 1 ~~~~hRI~i~~~~~-~~D~~-G~~~-~~w~~~~~~WA~v~~~~g----~E~~~a~~~~~~~~~~f~iR---y~~~i~~~~ 70 (107) T protein:vir:13 1 MARYERISIKKLEE-KNIKG-RRQE-ECLIPFYDCWAEILDLYG----QELYGALQMKLENTIIFKIR---YCKKVEELR 70 (107) T ss_pred CCcceEEEEEeeee-eeCCC-CCee-cceEeEEEEEEEEecCCc----hheeecceeheeeeEEEEEE---ecCCccccc Confidence 7664 455555554 45755 6554 469999999999998754 57888888888888888883 444455555 Q ss_pred CccccEEEecCCCceEEEeeeccCCchhhcCCceEEEEEEEEee Q lcl|NC_012740. 130 PKSGDLIYIPMSNDLFEINYVEPYQPFFQAGKNAMRKIIAEKFV 173 (246) Q Consensus 130 P~EGDLIYfPm~n~LFEI~~VE~~~PFyQ~Gk~~v~~l~ce~F~ 173 (246) +..++-|.+ .++.|+|..|.+.+ +++-..+|.|+.=. T Consensus 71 ~t~~~Ri~~--~g~~y~I~~v~~~~-----~~~~~l~i~c~eV~ 107 (107) T protein:vir:13 71 NKENFIVEW--QGRKYEIYYPDFLG-----YNKQFVKLKCKEVL 107 (107) T ss_pred cCcCcEEEE--CCeEEEEEecCCcc-----cCCeEEEEEEEEeC Confidence 667777766 78999999997433 25557899998776 No 18 >protein:vir:97237 Length: 122 # NCBI annotation: hypothetical protein ORF025 # Family: family:all:704 # MgeID: mge:1657 # MgeName: M6 # Cross-refs: genbank:acc:YP_001294533;genbank:gi:149408254;genbank:GeneID:5237102 Probab=29.12 E-value=1.7 Score=19.34 Aligned_cols=121 Identities=13% Similarity=0.153 Sum_probs=77.6 Q ss_pred ccceeEecCcchhHHHHHHHHHHHHHhcCceEEEeeheecccccccccc-cccccccceeeeeechhhhccCCCcceeee Q lcl|NC_012740. 25 LNPYVNFNRHTNTQTLADVMVAEAIQMRGVELYYIPREFVKPDMIFGED-VQSKFTKAWKFAAYINSFDGYEGAGNFFQS 103 (246) Q Consensus 25 ~NpYfN~~g~~~eQ~L~~~LV~EsIqm~G~dv~YlpRe~v~~D~v~~Ed-~~skF~~a~~ieaY~~n~egy~g~~d~~SK 103 (246) .+.| ..-++.+. +.|+-+|..|.+.+..-..-|+-.++. +-+.-...|+..+.+.+|.--.=+|.+ T Consensus 1 M~~y------~~~~~~a~----~Li~kfG~~vtl~r~~~g~y~~~~g~~~p~~~t~~~~~~~gv~~~~~~~~idGtl--- 67 (122) T protein:vir:97 1 MARF------DSAIALAK----KLIKKNGQAVTLRGFTAGAAPDPAKPWKPGGNVAADQTIEAVFLDYEQRYIDGQT--- 67 (122) T ss_pred Cccc------hHHHHHHH----HHHHHhCCceEEEEeccceeCCCCCceecCCceeeeeeeEEEeeccchhhccCcE--- Confidence 2223 23444444 445559999998877766666665642 224446778999999888754444433 Q ss_pred cCceeeeeEEEEEcchhhhhhhcCCCCccccEEEecCCCceEEEeeeccCCchhhcCCceEEEEEEEE Q lcl|NC_012740. 104 MGYTANDELTFTVNPNLFKHQVDDQEPKSGDLIYIPMSNDLFEINYVEPYQPFFQAGKNAMRKIIAEK 171 (246) Q Consensus 104 FG~~~~DE~tf~IS~~rF~~~~~~~~P~EGDLIYfPm~n~LFEI~~VE~~~PFyQ~Gk~~v~~l~ce~ 171 (246) |+..|..-+...... .-.|+-||+|-+ +..-|.|-.|++-+| .|--..|+|..-+ T Consensus 68 --I~~GD~~l~~~a~~~------~~~P~~gD~v~~--~g~~~~Vi~v~~i~p---a~~~v~y~lqlRk 122 (122) T protein:vir:97 68 --IRMGDQRVFMPAEGL------TAPPEVEGLVLR--GLEVWKVIAVKPLNP---NGQAIMYELQVRQ 122 (122) T ss_pred --EeecCEEEEEeeCCC------ccccccCCEEEe--CCEEEEEEeccccCC---CCceEEEEEEeeC Confidence 455665544332221 357888999965 778899999987666 4555667777777 Done!