Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phiSauS-IPLA88 | Genbank acc : NC_011614

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 1) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 60

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	41	lcl\|NC_011614.1_cdsid_YP_002332517.1	HHsearch (proba=100.00%)
Portal	36	lcl\|NC_011614.1_cdsid_YP_002332512.1	HHsearch (proba=100.00%)
TermL	35	lcl\|NC_011614.1_cdsid_YP_002332511.1	Blast (e-value=0)
MTP	46	lcl\|NC_011614.1_cdsid_YP_002332522.1	Blast (e-value=1e-106)
Sheath	NOT FOUND
Ad1	43	lcl\|NC_011614.1_cdsid_YP_002332519.1	HHsearch (proba=100.00%)
Hc1	NOT FOUND
Ne1	44	lcl\|NC_011614.1_cdsid_YP_002332520.1	HHsearch (proba=100.00%)
Tc1	45	lcl\|NC_011614.1_cdsid_YP_002332521.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:103955 protein:vir:9309 protein:vir:78830	phiNM phi 11 80alpha	99 % 99 % 98 %
Portal	protein:vir:96240 protein:vir:78805 protein:vir:103951	69 80alpha phiNM	99 % 98 % 98 %
TermL	protein:vir:97165 protein:vir:95761 protein:vir:94525	85 SMP phiJL-1	85 % 64 % 43 %
MTP	protein:vir:103919 protein:vir:96224 protein:vir:99775	phiNM 69 phiETA2	94 % 94 % 94 %
Ad1	protein:vir:78849 protein:vir:103957 protein:vir:97145	80alpha phiNM 85	95 % 95 % 95 %
Ne1	protein:vir:78858 protein:vir:103917 protein:vir:97144	80alpha phiNM 85	95 % 95 % 95 %
Tc1	protein:vir:78854 protein:vir:96355 protein:vir:9313	80alpha 53 phi 11	98 % 98 % 98 %