BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|NC_011614.1_cdsid_YP_002332511.1 [gene=SauSIPLA88_gp36] [protein=putative terminase large subunit] [protein_id=YP_002332511.1] [location=15596..16885] (429 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|9289|lcl|protein:vir:97165 Length: 431 # NCBI annotation: ORF... 764 0.0 gi|6093|lcl|protein:vir:95761 Length: 432 # NCBI annotation: ter... 580 e-167 gi|3326|lcl|protein:vir:94525 Length: 440 # NCBI annotation: put... 373 e-105 gi|9829|lcl|protein:vir:103950 Length: 425 # NCBI annotation: ph... 209 6e-56 gi|2779|lcl|protein:vir:99776 Length: 425 # NCBI annotation: lar... 208 8e-56 gi|17691|lcl|protein:vir:9305 Length: 447 # NCBI annotation: lar... 208 9e-56 gi|7643|lcl|protein:vir:96370 Length: 447 # NCBI annotation: ORF... 208 9e-56 gi|11588|lcl|protein:vir:78831 Length: 447 # NCBI annotation: te... 208 9e-56 gi|7301|lcl|protein:vir:96238 Length: 447 # NCBI annotation: ORF... 208 1e-55 gi|5208|lcl|protein:vir:106641 Length: 446 # NCBI annotation: OR... 194 2e-51 gi|5321|lcl|protein:vir:99534 Length: 422 # NCBI annotation: put... 186 5e-49 gi|15353|lcl|protein:vir:9921 Length: 425 # NCBI annotation: put... 183 4e-48 gi|7076|lcl|protein:vir:96147 Length: 419 # NCBI annotation: ORF... 179 6e-47 gi|11736|lcl|protein:vir:79016 Length: 417 # NCBI annotation: pu... 173 3e-45 gi|5891|lcl|protein:vir:107098 Length: 421 # NCBI annotation: pu... 169 4e-44 gi|4983|lcl|protein:vir:95058 Length: 421 # NCBI annotation: ORF... 159 5e-41 gi|10354|lcl|protein:vir:97448 Length: 421 # NCBI annotation: OR... 159 7e-41 gi|3182|lcl|protein:vir:94499 Length: 421 # NCBI annotation: ORF... 159 7e-41 gi|6284|lcl|protein:vir:95890 Length: 421 # NCBI annotation: ORF... 158 9e-41 gi|10483|lcl|protein:vir:105297 Length: 446 # NCBI annotation: p... 158 1e-40 gi|7569|lcl|protein:vir:96300 Length: 421 # NCBI annotation: ORF... 157 2e-40 gi|8730|lcl|protein:vir:96840 Length: 421 # NCBI annotation: ORF... 147 3e-37 gi|18074|lcl|protein:vir:5954 Length: 422 # NCBI annotation: hyp... 145 9e-37 gi|10799|lcl|protein:vir:78055 Length: 440 # NCBI annotation: Te... 94 3e-21 gi|15836|lcl|protein:vir:37 Length: 443 # NCBI annotation: putat... 94 5e-21 gi|13020|lcl|protein:vir:80960 Length: 443 # NCBI annotation: Te... 91 3e-20 gi|8380|lcl|protein:vir:96782 Length: 408 # NCBI annotation: put... 83 5e-18 gi|2819|lcl|protein:vir:105705 Length: 439 # NCBI annotation: gp... 83 8e-18 gi|13903|lcl|protein:vir:9870 Length: 273 # NCBI annotation: put... 76 8e-16 gi|19292|lcl|protein:vir:4781 Length: 436 # NCBI annotation: put... 69 8e-14 gi|1165|lcl|protein:vir:102941 Length: 421 # NCBI annotation: te... 67 4e-13 gi|5794|lcl|protein:vir:98922 Length: 453 # NCBI annotation: ter... 67 4e-13 gi|655|lcl|protein:vir:1588 Length: 447 # NCBI annotation: putat... 65 1e-12 gi|6886|lcl|protein:vir:106551 Length: 424 # NCBI annotation: pu... 57 3e-10 gi|21526|lcl|protein:vir:104262 Length: 438 # NCBI annotation: t... 56 9e-10 gi|4914|lcl|protein:vir:99572 Length: 459 # NCBI annotation: Ter... 52 2e-08 gi|5142|lcl|protein:vir:105417 Length: 470 # NCBI annotation: ge... 44 4e-06 gi|17761|lcl|protein:vir:171 Length: 470 # NCBI annotation: term... 44 4e-06 gi|6775|lcl|protein:vir:96067 Length: 460 # NCBI annotation: con... 44 5e-06 gi|1596|lcl|protein:vir:93748 Length: 403 # NCBI annotation: ORF... 40 5e-05 gi|14951|lcl|protein:vir:1235 Length: 405 # NCBI annotation: sim... 40 5e-05 gi|4261|lcl|protein:vir:94806 Length: 402 # NCBI annotation: ORF... 39 1e-04 gi|9935|lcl|protein:vir:97273 Length: 402 # NCBI annotation: ORF... 37 4e-04 gi|2931|lcl|protein:vir:105460 Length: 409 # NCBI annotation: pu... 37 6e-04 gi|18891|lcl|protein:vir:8847 Length: 482 # NCBI annotation: ter... 36 9e-04 gi|16025|lcl|protein:vir:9814 Length: 403 # NCBI annotation: put... 35 0.002 gi|16299|lcl|protein:vir:3027 Length: 375 # NCBI annotation: ter... 35 0.002 gi|11622|lcl|protein:vir:78869 Length: 439 # NCBI annotation: Te... 34 0.003 gi|15201|lcl|protein:vir:7028 Length: 631 # NCBI annotation: lar... 32 0.015 gi|10294|lcl|protein:vir:105656 Length: 405 # NCBI annotation: p... 28 0.21 gi|8927|lcl|protein:vir:97005 Length: 632 # NCBI annotation: 40 ... 28 0.22 gi|7495|lcl|protein:vir:103312 Length: 624 # NCBI annotation: Te... 27 0.48 gi|5072|lcl|protein:vir:95130 Length: 531 # NCBI annotation: hyp... 26 0.90 gi|12899|lcl|protein:vir:80432 Length: 510 # NCBI annotation: Bc... 25 1.7 gi|3763|lcl|protein:vir:107694 Length: 527 # NCBI annotation: pu... 24 3.7 gi|8126|lcl|protein:vir:102661 Length: 568 # NCBI annotation: te... 24 4.0 gi|8001|lcl|protein:vir:100241 Length: 154 # NCBI annotation: gp... 24 4.2 >gi|9289|lcl|protein:vir:97165 Length: 431 # NCBI annotation: ORF008 # Family: family:all:54 # MgeID: mge:1654 # MgeName: 85 # Cross-refs: genbank:acc:YP_239721;genbank:gi:66394878;genbank:GeneID :5130898 Length = 431 Score = 764 bits (1973), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/431 (85%), Positives = 396/431 (91%), Gaps = 2/431 (0%) Query: 1 MYEILDLKNKIGGGYNKFWHNKSFYRVVKGSRGSKKSKTTAINFIYRIMKYDWANILVVR 60 MYEILDLKNKIGGGYNKFWHNK+FYRVVKGSRGSKKSKTTAIN IYRIMKYDWANILVVR Sbjct: 1 MYEILDLKNKIGGGYNKFWHNKNFYRVVKGSRGSKKSKTTAINLIYRIMKYDWANILVVR 60 Query: 61 RFSNTNKQSTYTDLKWATNQLGVAHLFKFNESLPEITYKPTGQKILFRGLDDPLKITSIT 120 RFSNTNKQSTYTDLKWATNQLGVAHLFKFNESLPEITYKPTGQKILFRGLDDPLKITSIT Sbjct: 61 RFSNTNKQSTYTDLKWATNQLGVAHLFKFNESLPEITYKPTGQKILFRGLDDPLKITSIT 120 Query: 121 VDTGILCWAWFEEAYQIETFAKFSTVVESIRGSYDSPDFFKQITVTFNPWSERHWLKSTF 180 VDTGILCWAWFEEAYQIETFAKFSTVVESIRGSYDSP+FFKQITVTFNPWSERHWLK TF Sbjct: 121 VDTGILCWAWFEEAYQIETFAKFSTVVESIRGSYDSPEFFKQITVTFNPWSERHWLKPTF 180 Query: 181 FDEETKLNNTFSDTTTYRVNEWLDKVDIERYEDLYIKNPRRARIVCDGDWGVAEGLVFDN 240 FDEETKLNNTFSDTTTYRVNEWLDKVDIERYEDLYIKNPRRARIVCDGDWGVAEGLVFDN Sbjct: 181 FDEETKLNNTFSDTTTYRVNEWLDKVDIERYEDLYIKNPRRARIVCDGDWGVAEGLVFDN 240 Query: 241 FKVTDFDWREKFKRTQEIAHGMDFGFTFDPTTLINTVVDLKNKELWIYDEHSEKAMLTDD 300 FKV DFDW E+FKRTQEI HGMDFGF+ DPTT+++TVVDLKNK+L+IYDEH +KAMLTDD Sbjct: 241 FKVEDFDWFEEFKRTQEITHGMDFGFSQDPTTVVSTVVDLKNKKLFIYDEHYKKAMLTDD 300 Query: 301 IINMIKRKGYQDAHIVAD--SAEKRLITEISRKGVPNIKPSVKGANTIMQGVQFIQGFKV 358 I M+ +KG D I AD + R+I+E+ KG+ I+ ++KGANTI+ G+QFIQGF+V Sbjct: 301 IKQMLIKKGLGDVDIAADYGAGGDRVISELKSKGIKGIRKALKGANTILPGIQFIQGFEV 360 Query: 359 YVHPSCVHTIEELNTYTFDQDSEGNWINKPIDKNNHLMDALRYSLEKYHIKLKKRKKNAE 418 +HPSC H IEE NTYTFDQD++G W+NKPID NNH++DALRYSLEKYHI KKRKKN E Sbjct: 361 IIHPSCEHAIEEFNTYTFDQDNDGKWLNKPIDANNHIIDALRYSLEKYHIVRKKRKKNIE 420 Query: 419 SKTKVIKSLGL 429 SKTKVIKSLGL Sbjct: 421 SKTKVIKSLGL 431 >gi|6093|lcl|protein:vir:95761 Length: 432 # NCBI annotation: terminase large subunit # Family: family:all:54 # MgeID: mge:1578 # MgeName: SMP # Cross-refs: genbank:acc:YP_950582;genbank:gi:119953777;genbank:GeneI D:5076831 Length = 432 Score = 580 bits (1495), Expect = e-167, Method: Compositional matrix adjust. Identities = 270/408 (66%), Positives = 325/408 (79%) Query: 5 LDLKNKIGGGYNKFWHNKSFYRVVKGSRGSKKSKTTAINFIYRIMKYDWANILVVRRFSN 64 ++L +G GY +FW +K+FYRVVKG RGSKKSKTTA+ +I I+KY+WAN+LVVRRFSN Sbjct: 9 VNLPEIVGKGYGQFWRSKNFYRVVKGGRGSKKSKTTALYYIVAILKYNWANLLVVRRFSN 68 Query: 65 TNKQSTYTDLKWATNQLGVAHLFKFNESLPEITYKPTGQKILFRGLDDPLKITSITVDTG 124 TNKQSTYTDLKWA N+L V+HLFKFNESLPEIT K TGQKILFRGLDDPLKITSITVDTG Sbjct: 69 TNKQSTYTDLKWAANRLNVSHLFKFNESLPEITVKATGQKILFRGLDDPLKITSITVDTG 128 Query: 125 ILCWAWFEEAYQIETFAKFSTVVESIRGSYDSPDFFKQITVTFNPWSERHWLKSTFFDEE 184 +L W W EEAYQ+E KF T+VESIRGS D+PDFFKQITVTFNPWSERHWLKS FFDE+ Sbjct: 129 LLSWLWLEEAYQVENQDKFETLVESIRGSIDAPDFFKQITVTFNPWSERHWLKSAFFDED 188 Query: 185 TKLNNTFSDTTTYRVNEWLDKVDIERYEDLYIKNPRRARIVCDGDWGVAEGLVFDNFKVT 244 T+ + F+DTTTYRVNEWLD+ DI+RYEDL+ NPRRA +V +GDWGVAEGLVF+N++V Sbjct: 189 TRKKDVFADTTTYRVNEWLDQQDIDRYEDLWRTNPRRAAVVANGDWGVAEGLVFENYEVK 248 Query: 245 DFDWREKFKRTQEIAHGMDFGFTFDPTTLINTVVDLKNKELWIYDEHSEKAMLTDDIINM 304 DFD KR E G+DFGFT DPTT VDL+ KELWIY EH E AM TDDI M Sbjct: 249 DFDIVSTIKRIGETTAGLDFGFTHDPTTFPRLAVDLEKKELWIYAEHYEHAMTTDDIFKM 308 Query: 305 IKRKGYQDAHIVADSAEKRLITEISRKGVPNIKPSVKGANTIMQGVQFIQGFKVYVHPSC 364 I Q+A I ADSAE+RLI E+ KG+ + PS+KG +I G+ F++ FK+Y+HPSC Sbjct: 309 IVDADMQNAVITADSAEQRLIAELQAKGIRRLVPSIKGKGSINAGIDFMKQFKIYIHPSC 368 Query: 365 VHTIEELNTYTFDQDSEGNWINKPIDKNNHLMDALRYSLEKYHIKLKK 412 + TIEE +TY + QD +G W+N+PID NNH++DA+RY+LE+YHI+ K Sbjct: 369 IKTIEEFDTYIYKQDKDGKWLNEPIDSNNHIIDAIRYALERYHIQTSK 416 >gi|3326|lcl|protein:vir:94525 Length: 440 # NCBI annotation: putative large subunit terminase # Family: family:all:54 # MgeID: mge:1510 # MgeName: phiJL-1 # Cross-refs: genbank:acc:YP_223885;genbank:gi:62327097;genbank:GeneID :5075541 Length = 440 Score = 373 bits (957), Expect = e-105, Method: Compositional matrix adjust. Identities = 190/427 (44%), Positives = 272/427 (63%), Gaps = 5/427 (1%) Query: 5 LDLKNKIGGGYNKFWHNKSFYRVVKGSRGSKKSKTTAINFIYRIMKYDWANILVVRRFSN 64 L++ + Y ++++ Y V KGSRGS KS TA I IM Y + N LV R+++ Sbjct: 17 LNVPYIVSKAYYPMFNSRDRYLVYKGSRGSGKSYATAAKVIIDIMMYPYVNWLVTRQYAT 76 Query: 65 TNKQSTYTDLKWATNQLGVAHLFKFNESLPEITYKPTGQKILFRGLDDPLKITSITVDTG 124 T K ST+ ++ + +GV LFKF +S EITYK TGQK+ FRG+DDPLKITSI TG Sbjct: 77 TQKDSTFATIRKVAHSMGVLDLFKFTKSPLEITYKQTGQKVFFRGMDDPLKITSIQPVTG 136 Query: 125 ILCWAWFEEAYQIETFAKFSTVVESIRGSYDSPDFFKQITVTFNPWSERHWLKSTFFDEE 184 +C W EEAY++++ F TV ES+RG P F Q +TFNPWS+RHWLK FFD++ Sbjct: 137 FICRRWCEEAYELKSLDAFDTVEESMRGEL-PPGGFYQTVITFNPWSDRHWLKHEFFDDK 195 Query: 185 TKLNNTFSDTTTYRVNEWLDKVDIERYEDLYIKNPRRARIVCDGDWGVAEGLVFDN-FKV 243 TK N++ + TTTY+ N+ L+ ++ +++ ++NP RAR+ G+WG+AEGLVFD F+ Sbjct: 196 TKRNHSRAITTTYKDNDHLNADYVDSLKEMLVRNPNRARVAVLGEWGIAEGLVFDGLFEQ 255 Query: 244 TDFDWREKFKRTQEIAHGMDFGFTFDPTTLINTVVDLKNKELWIYDEHSEKAMLTDDIIN 303 DF + E + + G+DFGF DPT VD N+ ++IYDE ++ +LT+ I Sbjct: 256 RDFSYDEIANLPKSV--GLDFGFKHDPTAGEFIAVDQDNRIVYIYDEFYKQHLLTNQIAQ 313 Query: 304 MIKRKGYQDAHIVADSAEKRLITEISRKG-VPNIKPSVKGANTIMQGVQFIQGFKVYVHP 362 + + I ADSAE+R+I E+S++ VPNIKPS KG ++++QG+Q++Q ++ VHP Sbjct: 314 ELAKHKAFGLPITADSAEQRMIVELSQQHRVPNIKPSGKGKDSVIQGIQYMQSYRFVVHP 373 Query: 363 SCVHTIEELNTYTFDQDSEGNWINKPIDKNNHLMDALRYSLEKYHIKLKKRKKNAESKTK 422 +EE NTY +D D EGNW+NKP D NNH +DALRY+LEKY N + + Sbjct: 374 RVKGLMEEFNTYVYDMDKEGNWLNKPKDANNHAIDALRYALEKYMFVRAGHYMNYQERVS 433 Query: 423 VIKSLGL 429 +K+LGL Sbjct: 434 TLKNLGL 440 >gi|9829|lcl|protein:vir:103950 Length: 425 # NCBI annotation: phage terminase large subunit # Family: family:all:54 # MgeID: mge:1662 # MgeName: phiNM # Cross-refs: genbank:acc:YP_873987;genbank:gi:118430762;genbank:GeneI D:4525444 Length = 425 Score = 209 bits (531), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 129/387 (33%), Positives = 217/387 (56%), Gaps = 26/387 (6%) Query: 52 DWA---NILVVRRFSNTNKQSTYTDLKWATNQLGVAHLFKFNESLPEITYKPTGQKILFR 108 DW IL +R+ +T K S + D+K G+ + +N++ ++ P G LF+ Sbjct: 56 DWKYPRRILWLRKVQSTIKDSLFEDVKDCLINFGIWDMCLWNKTDNKVEL-PNGAVFLFK 114 Query: 109 GLDDPLKITSITVDTGILCWAWFEEAYQIETFAKFSTVVESIRGSYDSPDFFKQITVTFN 168 GLD+P KI SI + I+ EEA + T ++ + +R + KQI + FN Sbjct: 115 GLDNPEKIKSIKGISDIV----MEEASEF-TLNDYTQLTLRLR---ERKHVNKQIFLMFN 166 Query: 169 PWSERHWLKSTFFDEETKLNNTFSDTTTYRVNEWLDKVDIERYEDLYIKNPRRARIVCDG 228 P S+ +W+ FF+ + N ++YR N++LD++ + E L +NP +I G Sbjct: 167 PVSKLNWVYKYFFEHGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPAYYKIYALG 226 Query: 229 DWGVAEGLVFDNFKVTDFDWREKFKRTQEIAH-----GMDFGFTFDPTTLINTVVDLKNK 283 ++ + LVF ++ ++ E+ H G+DFG+ DP+ I++ +D+K K Sbjct: 227 EFATLDKLVFPKYE-------KRLINKDELRHLPSYFGLDFGYVNDPSAFIHSKIDVKKK 279 Query: 284 ELWIYDEHSEKAMLTDDIINMIKRKGYQDAHIVADSAEKRLITEISRKGVPNIKPSVKGA 343 +L+I +E+ ++ ML D+I N+IK+ GY I ADSAE++ I E+ G+ I P+ KG Sbjct: 280 KLYIIEEYVKQGMLNDEIANVIKQLGYAKEEITADSAEQKSIAELRNLGLKRILPTKKGK 339 Query: 344 NTIMQGVQFIQGFKVYVHPSCVHTIEELNTYTFDQDSE-GNWINKPIDKNNHLMDALRYS 402 +++QG+QF+ F++ V C TIEE + YT+ +D + G + N+P+D NH +D+LRYS Sbjct: 340 GSVVQGLQFLMQFEIIVDERCFKTIEEFDNYTWQKDKDTGEYTNEPVDTYNHCIDSLRYS 399 Query: 403 LEKYHIKLKKRKKNAESKTKVIKSLGL 429 +E+++ ++KR N SK IKSLGL Sbjct: 400 VERFYRPVRKR-TNVSSKVDTIKSLGL 425 >gi|2779|lcl|protein:vir:99776 Length: 425 # NCBI annotation: large terminase # Family: family:all:54 # MgeID: mge:1497 # MgeName: phiETA2 # Cross-refs: genbank:acc:YP_001004302;genbank:gi:122891756;genbank:Ge neID:4712331 Length = 425 Score = 208 bits (530), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 129/387 (33%), Positives = 217/387 (56%), Gaps = 26/387 (6%) Query: 52 DWA---NILVVRRFSNTNKQSTYTDLKWATNQLGVAHLFKFNESLPEITYKPTGQKILFR 108 DW IL +R+ +T K S + D+K G+ + +N++ ++ P G LF+ Sbjct: 56 DWKYPRRILWLRKVQSTIKDSLFEDVKDCLINFGIWDMCLWNKTDNKVGL-PNGAVFLFK 114 Query: 109 GLDDPLKITSITVDTGILCWAWFEEAYQIETFAKFSTVVESIRGSYDSPDFFKQITVTFN 168 GLD+P KI SI + I+ EEA + T ++ + +R + KQI + FN Sbjct: 115 GLDNPEKIKSIKGISDIV----MEEASEF-TLNDYTQLTLRLR---ERKHVNKQIFLIFN 166 Query: 169 PWSERHWLKSTFFDEETKLNNTFSDTTTYRVNEWLDKVDIERYEDLYIKNPRRARIVCDG 228 P S+ +W+ FF+ + N ++YR N++LD++ + E L +NP +I G Sbjct: 167 PVSKLNWVYKYFFEHGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPAYYKIYALG 226 Query: 229 DWGVAEGLVFDNFKVTDFDWREKFKRTQEIAH-----GMDFGFTFDPTTLINTVVDLKNK 283 ++ + LVF ++ ++ E+ H G+DFG+ DP+ I++ +D+K K Sbjct: 227 EFATLDKLVFPKYE-------KRLINKDELRHLPSYFGLDFGYVNDPSAFIHSKIDVKKK 279 Query: 284 ELWIYDEHSEKAMLTDDIINMIKRKGYQDAHIVADSAEKRLITEISRKGVPNIKPSVKGA 343 +L+I +E+ ++ ML D+I N+IK+ GY I ADSAE++ I E+ G+ I P+ KG Sbjct: 280 KLYIIEEYVKQGMLNDEIANVIKQLGYAKEEITADSAEQKSIAELRNLGLKRILPTKKGK 339 Query: 344 NTIMQGVQFIQGFKVYVHPSCVHTIEELNTYTFDQDSE-GNWINKPIDKNNHLMDALRYS 402 +++QG+QF+ F++ V C TIEE + YT+ +D + G + N+P+D NH +D+LRYS Sbjct: 340 GSVVQGLQFLMQFEIIVDERCFKTIEEFDNYTWQKDKDTGEYTNEPVDTYNHCIDSLRYS 399 Query: 403 LEKYHIKLKKRKKNAESKTKVIKSLGL 429 +E+++ ++KR N SK IKSLGL Sbjct: 400 VERFYRPVRKR-TNVSSKVDTIKSLGL 425 >gi|17691|lcl|protein:vir:9305 Length: 447 # NCBI annotation: large terminase # Family: family:all:54 # MgeID: mge:165 # MgeName: phi 11 # Cross-refs: genbank:acc:NP_803283;genbank:gi:29028593;genbank:GeneID :1258039 Length = 447 Score = 208 bits (530), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 129/387 (33%), Positives = 217/387 (56%), Gaps = 26/387 (6%) Query: 52 DWA---NILVVRRFSNTNKQSTYTDLKWATNQLGVAHLFKFNESLPEITYKPTGQKILFR 108 DW IL +R+ +T K S + D+K G+ + +N++ ++ P G LF+ Sbjct: 78 DWKYPRRILWLRKVQSTIKDSLFEDVKDCLINFGIWDMCLWNKTDNKVEL-PNGAVFLFK 136 Query: 109 GLDDPLKITSITVDTGILCWAWFEEAYQIETFAKFSTVVESIRGSYDSPDFFKQITVTFN 168 GLD+P KI SI + I+ EEA + T ++ + +R + KQI + FN Sbjct: 137 GLDNPEKIKSIKGISDIV----MEEASEF-TLNDYTQLTLRLR---ERKHVNKQIFLMFN 188 Query: 169 PWSERHWLKSTFFDEETKLNNTFSDTTTYRVNEWLDKVDIERYEDLYIKNPRRARIVCDG 228 P S+ +W+ FF+ + N ++YR N++LD++ + E L +NP +I G Sbjct: 189 PVSKLNWVYKYFFEHGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPAYYKIYALG 248 Query: 229 DWGVAEGLVFDNFKVTDFDWREKFKRTQEIAH-----GMDFGFTFDPTTLINTVVDLKNK 283 ++ + LVF ++ ++ E+ H G+DFG+ DP+ I++ +D+K K Sbjct: 249 EFATLDKLVFPKYE-------KRLINKDELRHLPSYFGLDFGYVNDPSAFIHSKIDVKKK 301 Query: 284 ELWIYDEHSEKAMLTDDIINMIKRKGYQDAHIVADSAEKRLITEISRKGVPNIKPSVKGA 343 +L+I +E+ ++ ML D+I N+IK+ GY I ADSAE++ I E+ G+ I P+ KG Sbjct: 302 KLYIIEEYVKQGMLNDEIANVIKQLGYAKEEITADSAEQKSIAELRNLGLKRILPTKKGK 361 Query: 344 NTIMQGVQFIQGFKVYVHPSCVHTIEELNTYTFDQDSE-GNWINKPIDKNNHLMDALRYS 402 +++QG+QF+ F++ V C TIEE + YT+ +D + G + N+P+D NH +D+LRYS Sbjct: 362 GSVVQGLQFLMQFEIIVDERCFKTIEEFDNYTWQKDKDTGEYTNEPVDTYNHCIDSLRYS 421 Query: 403 LEKYHIKLKKRKKNAESKTKVIKSLGL 429 +E+++ ++KR N SK IKSLGL Sbjct: 422 VERFYRPVRKR-TNLSSKVDTIKSLGL 447 >gi|7643|lcl|protein:vir:96370 Length: 447 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1613 # MgeName: 53 # Cross-refs: genbank:acc:YP_239642;genbank:gi:66395379;genbank:GeneID :5132846 Length = 447 Score = 208 bits (530), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 129/387 (33%), Positives = 217/387 (56%), Gaps = 26/387 (6%) Query: 52 DWA---NILVVRRFSNTNKQSTYTDLKWATNQLGVAHLFKFNESLPEITYKPTGQKILFR 108 DW IL +R+ +T K S + D+K G+ + +N++ ++ P G LF+ Sbjct: 78 DWKYPRRILWLRKVQSTIKDSLFEDVKDCLINFGIWDMCLWNKTDNKVEL-PNGAVFLFK 136 Query: 109 GLDDPLKITSITVDTGILCWAWFEEAYQIETFAKFSTVVESIRGSYDSPDFFKQITVTFN 168 GLD+P KI SI + I+ EEA + T ++ + +R + KQI + FN Sbjct: 137 GLDNPEKIKSIKGISDIV----MEEASEF-TLNDYTQLTLRLR---ERKHVNKQIFLMFN 188 Query: 169 PWSERHWLKSTFFDEETKLNNTFSDTTTYRVNEWLDKVDIERYEDLYIKNPRRARIVCDG 228 P S+ +W+ FF+ + N ++YR N++LD++ + E L +NP +I G Sbjct: 189 PVSKLNWVYKYFFEHGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPAYYKIYALG 248 Query: 229 DWGVAEGLVFDNFKVTDFDWREKFKRTQEIAH-----GMDFGFTFDPTTLINTVVDLKNK 283 ++ + LVF ++ ++ E+ H G+DFG+ DP+ I++ +D+K K Sbjct: 249 EFSTLDKLVFPKYE-------KRLINKDELRHLPSYFGLDFGYVNDPSAFIHSKIDVKKK 301 Query: 284 ELWIYDEHSEKAMLTDDIINMIKRKGYQDAHIVADSAEKRLITEISRKGVPNIKPSVKGA 343 +L+I +E+ ++ ML D+I N+IK+ GY I ADSAE++ I E+ G+ I P+ KG Sbjct: 302 KLYIIEEYVKQGMLNDEIANVIKQLGYAKEEITADSAEQKSIAELRNLGLKRILPTKKGK 361 Query: 344 NTIMQGVQFIQGFKVYVHPSCVHTIEELNTYTFDQDSE-GNWINKPIDKNNHLMDALRYS 402 +++QG+QF+ F++ V C TIEE + YT+ +D + G + N+P+D NH +D+LRYS Sbjct: 362 GSVVQGLQFLMQFEIIVDERCFKTIEEFDNYTWQKDKDTGEYTNEPVDTYNHCIDSLRYS 421 Query: 403 LEKYHIKLKKRKKNAESKTKVIKSLGL 429 +E+++ ++KR N SK IKSLGL Sbjct: 422 VERFYRPVRKR-TNVSSKVDTIKSLGL 447 >gi|11588|lcl|protein:vir:78831 Length: 447 # NCBI annotation: terminase large subunit # Family: family:all:54 # MgeID: mge:1858 # MgeName: 80alpha # Cross-refs: genbank:acc:YP_001285355;genbank:gi:148717883;genbank:Ge neID:5246962 Length = 447 Score = 208 bits (530), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 129/387 (33%), Positives = 217/387 (56%), Gaps = 26/387 (6%) Query: 52 DWA---NILVVRRFSNTNKQSTYTDLKWATNQLGVAHLFKFNESLPEITYKPTGQKILFR 108 DW IL +R+ +T K S + D+K G+ + +N++ ++ P G LF+ Sbjct: 78 DWKYPRRILWLRKVQSTIKDSLFEDVKDCLINFGIWDMCLWNKTDNKVEL-PNGAVFLFK 136 Query: 109 GLDDPLKITSITVDTGILCWAWFEEAYQIETFAKFSTVVESIRGSYDSPDFFKQITVTFN 168 GLD+P KI SI + I+ EEA + T ++ + +R + KQI + FN Sbjct: 137 GLDNPEKIKSIKGISDIV----MEEASEF-TLNDYTQLTLRLR---ERKHVNKQIFLMFN 188 Query: 169 PWSERHWLKSTFFDEETKLNNTFSDTTTYRVNEWLDKVDIERYEDLYIKNPRRARIVCDG 228 P S+ +W+ FF+ + N ++YR N++LD++ + E L +NP +I G Sbjct: 189 PVSKLNWVYKYFFEHGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPAYYKIYALG 248 Query: 229 DWGVAEGLVFDNFKVTDFDWREKFKRTQEIAH-----GMDFGFTFDPTTLINTVVDLKNK 283 ++ + LVF ++ ++ E+ H G+DFG+ DP+ I++ +D+K K Sbjct: 249 EFSTLDKLVFPKYE-------KRLINKDELRHLPSYFGLDFGYVNDPSAFIHSKIDVKKK 301 Query: 284 ELWIYDEHSEKAMLTDDIINMIKRKGYQDAHIVADSAEKRLITEISRKGVPNIKPSVKGA 343 +L+I +E+ ++ ML D+I N+IK+ GY I ADSAE++ I E+ G+ I P+ KG Sbjct: 302 KLYIIEEYVKQGMLNDEIANVIKQLGYAKEEITADSAEQKSIAELRNLGLKRILPTKKGK 361 Query: 344 NTIMQGVQFIQGFKVYVHPSCVHTIEELNTYTFDQDSE-GNWINKPIDKNNHLMDALRYS 402 +++QG+QF+ F++ V C TIEE + YT+ +D + G + N+P+D NH +D+LRYS Sbjct: 362 GSVVQGLQFLMQFEIIVDERCFKTIEEFDNYTWQKDKDTGEYTNEPVDTYNHCIDSLRYS 421 Query: 403 LEKYHIKLKKRKKNAESKTKVIKSLGL 429 +E+++ ++KR N SK IKSLGL Sbjct: 422 VERFYRPVRKR-TNVSSKVDTIKSLGL 447 >gi|7301|lcl|protein:vir:96238 Length: 447 # NCBI annotation: ORF008 # Family: family:all:54 # MgeID: mge:1607 # MgeName: 69 # Cross-refs: genbank:acc:YP_239566;genbank:gi:66395301;genbank:GeneID :5132787 Length = 447 Score = 208 bits (529), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 129/387 (33%), Positives = 217/387 (56%), Gaps = 26/387 (6%) Query: 52 DWA---NILVVRRFSNTNKQSTYTDLKWATNQLGVAHLFKFNESLPEITYKPTGQKILFR 108 DW IL +R+ +T K S + D+K G+ + +N++ ++ P G LF+ Sbjct: 78 DWKYPRRILWLRKVQSTIKDSLFEDVKDCLINFGIWDMCLWNKTDNKVEL-PNGAVFLFK 136 Query: 109 GLDDPLKITSITVDTGILCWAWFEEAYQIETFAKFSTVVESIRGSYDSPDFFKQITVTFN 168 GLD+P KI SI + I+ EEA + T ++ + +R + KQI + FN Sbjct: 137 GLDNPEKIKSIKGISDIV----MEEASEF-TLNDYTQLTLRLR---ERKHVNKQIFLMFN 188 Query: 169 PWSERHWLKSTFFDEETKLNNTFSDTTTYRVNEWLDKVDIERYEDLYIKNPRRARIVCDG 228 P S+ +W+ FF+ + N ++YR N++LD++ + E L +NP +I G Sbjct: 189 PVSKLNWVYKYFFEHGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPAYYKIYALG 248 Query: 229 DWGVAEGLVFDNFKVTDFDWREKFKRTQEIAH-----GMDFGFTFDPTTLINTVVDLKNK 283 ++ + LVF ++ ++ E+ H G+DFG+ DP+ I++ +D+K K Sbjct: 249 EFATLDKLVFPKYE-------KRLINKDELRHLPSYFGLDFGYVNDPSAFIHSKIDVKKK 301 Query: 284 ELWIYDEHSEKAMLTDDIINMIKRKGYQDAHIVADSAEKRLITEISRKGVPNIKPSVKGA 343 +L+I +E+ ++ ML D+I N+IK+ GY I ADSAE++ I E+ G+ I P+ KG Sbjct: 302 KLYIIEEYVKQGMLNDEIANVIKQLGYAREEITADSAEQKSIAELRNLGLKRILPTKKGK 361 Query: 344 NTIMQGVQFIQGFKVYVHPSCVHTIEELNTYTFDQDSE-GNWINKPIDKNNHLMDALRYS 402 +++QG+QF+ F++ V C TIEE + YT+ +D + G + N+P+D NH +D+LRYS Sbjct: 362 GSVVQGLQFLMQFEIIVDERCFKTIEEFDNYTWQKDKDTGEYTNEPVDTYNHCIDSLRYS 421 Query: 403 LEKYHIKLKKRKKNAESKTKVIKSLGL 429 +E+++ ++KR N SK IKSLGL Sbjct: 422 VERFYRPVRKR-TNLSSKVDTIKSLGL 447 >gi|5208|lcl|protein:vir:106641 Length: 446 # NCBI annotation: ORF005 # Family: family:all:54 # MgeID: mge:1557 # MgeName: 187 # Cross-refs: genbank:acc:YP_239489;genbank:gi:66395220;genbank:GeneID :4555795 Length = 446 Score = 194 bits (493), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 124/385 (32%), Positives = 209/385 (54%), Gaps = 26/385 (6%) Query: 52 DWA---NILVVRRFSNTNKQSTYTDLKWATNQLGVAHLFKFNESLPEITYKPTGQKILFR 108 DW IL +R+ +T K S + D+K G+ + +N++ ++ P G LF+ Sbjct: 78 DWKYPRRILWLRKVQSTIKDSLFEDVKGCLINFGIWDMCLWNKTDNKVEL-PNGAVFLFK 136 Query: 109 GLDDPLKITSITVDTGILCWAWFEEAYQIETFAKFSTVVESIRGSYDSPDFFKQITVTFN 168 GLD+P KI SI + I+ EEA + T ++ + +R + KQI + FN Sbjct: 137 GLDNPEKIKSIKGISDIV----MEEASEF-TLNDYTQLTLRLR---ERKHMNKQIFLMFN 188 Query: 169 PWSERHWLKSTFFDEETKLNNTFSDTTTYRVNEWLDKVDIERYEDLYIKNPRRARIVCDG 228 P S+ +W+ FF+ + N ++YR N++LD++ + E L +NP +I G Sbjct: 189 PVSKLNWVYKYFFEHGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPAYYKIYALG 248 Query: 229 DWGVAEGLVFDNFKVTDFDWREKFKRTQEIAH-----GMDFGFTFDPTTLINTVVDLKNK 283 ++ + LVF ++ ++ +E+ H G+DFG+ DP+ I+ +D NK Sbjct: 249 EFATLDKLVFPKYE-------KRIISDKEVGHLPSYFGLDFGYVNDPSAFIHVKIDNDNK 301 Query: 284 ELWIYDEHSEKAMLTDDIINMIKRKGYQDAHIVADSAEKRLITEISRKGVPNIKPSVKGA 343 +L++ E+ +K ML ++I +I GY I ADSAE++ I EI G+ I P++KG Sbjct: 302 KLYVISEYVKKGMLNNEIAQVINDLGYSKEKITADSAEQKSIMEIKTNGIDRIVPAMKGK 361 Query: 344 NTIMQGVQFIQGFKVYVHPSCVHTIEELNTYTFDQD-SEGNWINKPIDKNNHLMDALRYS 402 +++M G+QF+ F + + C TIEE + YT+ +D + G + N+P+D NH +DALRY+ Sbjct: 362 DSVMAGIQFVSQFDIVIDERCYKTIEEFDNYTWKKDKNTGEYYNEPVDTYNHCIDALRYA 421 Query: 403 LEKYHIKLKKRKKNAESKTKVIKSL 427 +E I+ K +KK+ + K IKSL Sbjct: 422 VEVLTIQKKHQKKDKNALRK-IKSL 445 >gi|5321|lcl|protein:vir:99534 Length: 422 # NCBI annotation: putative protein # Family: family:all:54 # MgeID: mge:1559 # MgeName: Lj928 # Cross-refs: genbank:acc:NP_958532;genbank:gi:41179314;genbank:GeneID :2717172 Length = 422 Score = 186 bits (472), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 116/353 (32%), Positives = 189/353 (53%), Gaps = 12/353 (3%) Query: 56 ILVVRRFSNTNKQSTYTDLKWATNQLGVAHLFKFNESLPEITYKPTGQKILFRGLDDPLK 115 +L +R+ T K S +TD+ + + N S I P G LF+G+DDP K Sbjct: 63 VLWLRKVDRTVKNSIFTDVTECLSGWNILQYCHVNRSDKTIVL-PNGAIFLFQGMDDPEK 121 Query: 116 ITSITVDTGILCWAWFEEAYQIETFAKFSTVVESIRGSYDSPDFFKQITVTFNPWSERHW 175 I SI + ++ EEA + ++ + +R +QI FNP S+ +W Sbjct: 122 IKSIKGLSDVV----MEEASEF-NHNDYTQLTLRLREPKHKQ---RQIFCMFNPVSKLNW 173 Query: 176 LKSTFFDEETKLNNT--FSDTTTYRVNEWLDKVDIERYEDLYIKNPRRARIVCDGDWGVA 233 T+FD + + +TY+ N +LD+ +I E+L NP +I G++ Sbjct: 174 TYQTWFDPSADYDRSRVAIHQSTYKDNRFLDEDNIRTIEELKNTNPAYYKIYTLGEFATL 233 Query: 234 EGLVFDNFKVTDFDWREKFKRTQEIAHGMDFGFTFDPTTLINTVVDLKNKELWIYDEHSE 293 + LVF F+ + R+ G+D+GF DP+ ++ +D++NK L++ DE + Sbjct: 234 DKLVFPYFETKRLNPRDPKLLALNDYFGLDYGFINDPSAFMHIKLDMRNKTLYVMDEFVK 293 Query: 294 KAMLTDDIINMIKRKGYQDAHIVADSAEKRLITEISRKGVPNIKPSVKGANTIMQGVQFI 353 K +L + + +IK GY I ADSAEK+ I E+ R G+ I+P++KG ++I+QG+QF+ Sbjct: 294 KGLLNNQLAQVIKDMGYSKEVITADSAEKKSIAEMKRDGIYRIRPALKGPDSIIQGIQFL 353 Query: 354 QGFKVYVHPSCVHTIEELNTYTFDQDSEGN-WINKPIDKNNHLMDALRYSLEK 405 Q FK V CV TIEEL YT+ +D + + + N+PID NH +DA+RY++E+ Sbjct: 354 QQFKWVVDDRCVKTIEELQNYTYVKDKKTDEYTNRPIDAYNHCIDAIRYAVEE 406 >gi|15353|lcl|protein:vir:9921 Length: 425 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:178 # MgeName: 315.6 # Cross-refs: genbank:acc:NP_795683;genbank:gi:28876465;genbank:GeneID :1257982 Length = 425 Score = 183 bits (464), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 125/399 (31%), Positives = 203/399 (50%), Gaps = 27/399 (6%) Query: 15 YNKFWHNKSFYRVVKGSRGSKKSKTTAINFIYRIMKYDWAN---ILVVRRFSNTNKQSTY 71 Y+K ++ +F V G S KS I + + + + ILV+R+ T + S + Sbjct: 25 YDKLYNYSNFTEVHYGGASSGKSHGVFQKIILKALNPKFKHPRKILVLRKVGATVRDSVF 84 Query: 72 TDLKWATNQLGVAHLFKFNESLPEITYKPTGQKILFRGLDDPLKITSITVDTGILCWAWF 131 D+ + G+ K N S IT P G + +F+G+D+P KI SI + ++ Sbjct: 85 ADIMSNLSYFGILDKCKINMSAFRITL-PNGAEFIFKGMDNPEKIKSIKGISDVV----M 139 Query: 132 EEAYQIETFAKFSTVVESIRGSYDSPDFFKQITVTFNPWSERHWLKSTFFDEETKLNNTF 191 EEA + T ++ + +R D KQI + FNP S+ +W+ FF + K NT Sbjct: 140 EEASEF-TLDDYTQLTLRLR---DKKHLEKQIYLMFNPVSKVNWVYKAFFVKTPK--NTV 193 Query: 192 SDTTTYRVNEWLDKVDIERYEDLYIKNPRRARIVCDGDWGVAEGLVFDNFKVTDFDWREK 251 TTY+ N +LD V E E+L +N +I G + + L+F + ++ Sbjct: 194 VYQTTYKDNRFLDDVTRENIEELANRNEAYYKIYALGQFATLDKLIFPKYD-------KQ 246 Query: 252 FKRTQEIAH-----GMDFGFTFDPTTLINTVVDLKNKELWIYDEHSEKAMLTDDIINMIK 306 +++H G+D+GF DP+ L++ +D NK+L+I +E+ K + D I N IK Sbjct: 247 ILNKDKLSHLPSFFGLDYGFINDPSALLHVKIDDANKKLYILEEYVRKNLTNDKIANAIK 306 Query: 307 RKGYQDAHIVADSAEKRLITEISRKGVPNIKPSVKGANTIMQGVQFIQGFKVYVHPSCVH 366 GY I DSAEK+ E+ G+P + KG T+MQG+Q++ + V CV Sbjct: 307 DLGYAKEEIRGDSAEKKSNQELRNLGIPRMIDVTKGPGTVMQGIQYLLQYDWIVDERCVK 366 Query: 367 TIEELNTYTFDQDSEGN-WINKPIDKNNHLMDALRYSLE 404 TIEEL YT+ +D + N + N+P+D NH +DA+RY+++ Sbjct: 367 TIEELENYTWKKDKKTNEYTNEPVDSYNHCIDAIRYAVQ 405 >gi|7076|lcl|protein:vir:96147 Length: 419 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1602 # MgeName: 37 # Cross-refs: genbank:acc:YP_240074;genbank:gi:66395738;genbank:GeneID :5133130 Length = 419 Score = 179 bits (454), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 124/384 (32%), Positives = 196/384 (51%), Gaps = 9/384 (2%) Query: 27 VVKGSRGSKKSKTTAINFIYRIMKYDWANILVVRRFSNTNKQSTYTDLKWATNQLGVAHL 86 V KG RGS KS AI + IM+Y N L++R+ NT S + +KWA N +GV+HL Sbjct: 29 VAKGGRGSGKSSDIAIIIVLLIMRYP-VNALILRKIDNTLALSVFEQIKWAINVMGVSHL 87 Query: 87 FKFNESLPEITYKPTGQKILFRGLDDPLKITSITVDTGILCWAWFEEAYQIETFAKFSTV 146 FK S EITY P G K++FRG +P +I S+ AW EE + +T + +T+ Sbjct: 88 FKIKVSPMEITYVPRGNKMVFRGAQNPERIKSLKDAQFPYAIAWIEELAEFKTEDEVTTI 147 Query: 147 VES-IRGSYDSPDFFKQITVTFNPWSERHWLKSTFFDEETKLNNTFSDTTTYRVNEWLDK 205 S +RG D+ F+K T+NP + + ++ + +NTF +TY N ++ K Sbjct: 148 TNSLLRGELDNGLFYK-FFYTYNPPKRKQSWVNKKYESSFQPDNTFVHHSTYLNNPFIAK 206 Query: 206 VDIERYEDLYIKNPRRARIVCDGDWGVAEGLV-FDNFKVTDFDWREKFKRTQEIAHGMDF 264 IE + N R R G+ + G+V F+N ++ +E+F I + +DF Sbjct: 207 EFIEEAKAAKAINELRYRWEYLGE-AIGSGVVPFNNLRIETIP-KEQFDTFDNIRNAVDF 264 Query: 265 GFTFDPTTLINTVVDLKNKELWIYDEHSEKAMLTDDIINMIKRKGYQDAHIVADSAEKRL 324 G+ DP + D K + ++ DEH + + N +K+KGYQ I ADSAE + Sbjct: 265 GYATDPLAFVRWHYDKKKRIIYAVDEHYGVQISNREFANWLKKKGYQSDEIYADSAEPKS 324 Query: 325 ITEISRK-GVPNIKPSVKGANTIMQGVQFIQGF-KVYVHPSCVHTI-EELNTYTFDQDSE 381 I E+ ++ + IK KG +++ G Q++ + + P+ I E + D + Sbjct: 325 IAELKQEHSIRRIKGVKKGPDSVEHGEQWLNDLDAIVIDPTRTPNIAREFENIDYQTDKD 384 Query: 382 GNWINKPIDKNNHLMDALRYSLEK 405 GN + DK+NH +DA RY+LE+ Sbjct: 385 GNVKPRLEDKDNHTIDATRYALER 408 >gi|11736|lcl|protein:vir:79016 Length: 417 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:1861 # MgeName: phiC2 # Cross-refs: genbank:acc:YP_001110720;genbank:gi:134287337;genbank:Ge neID:4955190 Length = 417 Score = 173 bits (439), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 120/393 (30%), Positives = 202/393 (51%), Gaps = 19/393 (4%) Query: 22 KSFYRVVKGSRGSKKSKTTAINFIYRI--MKYDWANILVVRRFSNTNKQSTYTDLKWATN 79 K YR +KGS GS KS A ++I ++ KY AN+LVVR+ T+K STY +L A N Sbjct: 22 KKRYRAMKGSAGSGKSVNVAQDYILKLGDKKYQGANLLVVRKSEATHKYSTYAELTGAIN 81 Query: 80 QLGVAHLFKFNESLP---EITYKPTGQKILFRGLDDPL---KITSITVDTGILCWAWFEE 133 ++ K+ ++ EI K TG I+FRG++D K+ SI G L W W EE Sbjct: 82 RIYGKQADKYWKTTLNPLEIKSKVTGNSIIFRGVNDAKQREKLKSINFSKGKLTWVWCEE 141 Query: 134 AYQIETFAKFSTVVESIRGSYDSPDFFKQITVTFNPWSERHWLKSTFFDEETKLNNTFSD 193 A ++ + + + +RG +P+ + Q+T TFNP S HW+K +FD K ++ F+ Sbjct: 142 ATELME-SDIDILDDRLRGILTNPNLYYQMTFTFNPVSATHWIKRKYFD--YKNDDIFTH 198 Query: 194 TTTYRVNEWLDKVDIERYEDLYIKNPRRARIVCDGDWGVAEGLVFDNFKVTDFDWREKFK 253 +TY N ++D+ R + ++P ++ G+WG G + N+ + +F ++ Sbjct: 199 HSTYLQNRFIDEAYYRRMQMRKEQDPEGYKVYGLGEWGETGGAILKNYVIHEFPTESEYF 258 Query: 254 RTQEIAHGMDFGFTFDPTTLINTVVDLKNKELWIYDEHSEKAMLTDDIINMIKRKGYQDA 313 ++ DFGF L + K+ EL+I +E M T +II + G + Sbjct: 259 DNMRLSQ--DFGFNHANVVL---RIGFKDGELYICNEIYAHEMDTSEIIKIANSIGLEKT 313 Query: 314 -HIVADSAEKRLITEISRKGVPNIKPSVKGANTIMQGVQFIQGFKVYVHPSCVHTIEELN 372 + DSAE I G K KG ++ + +++ +++VHPSC +TI+E+ Sbjct: 314 LFMYCDSAEPDRIKMWKSAGY-KAKGVKKGPGSVKAQIDYLKQLRIHVHPSCTNTIKEIQ 372 Query: 373 TYTFDQDSE-GNWINKPIDKNNHLMDALRYSLE 404 + + QD G ++++P++ + M ALRYS++ Sbjct: 373 QWKWKQDERTGLYLDEPVEFMDDAMAALRYSID 405 >gi|5891|lcl|protein:vir:107098 Length: 421 # NCBI annotation: putative large terminase subunit # Family: family:all:54 # MgeID: mge:1571 # MgeName: CNPH82 # Cross-refs: genbank:acc:YP_950600;genbank:gi:119953680;genbank:GeneI D:4643107 Length = 421 Score = 169 bits (429), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 119/384 (30%), Positives = 194/384 (50%), Gaps = 9/384 (2%) Query: 27 VVKGSRGSKKSKTTAINFIYRIMKYDWANILVVRRFSNTNKQSTYTDLKWATNQLGVAHL 86 V KG RGS KS +I IM+Y N +VVR+ NT S + +KWA + V+HL Sbjct: 31 VAKGGRGSGKSSDISIIITQLIMRYP-MNAVVVRKTDNTLATSVFEQIKWAIEEQKVSHL 89 Query: 87 FKFNESLPEITYKPTGQKILFRGLDDPLKITSITVDTGILCWAWFEEAYQIETFAKFSTV 146 FK S EITY P G +I+FRG +P ++ S+ W EE + +T + +T+ Sbjct: 90 FKVKVSPMEITYVPRGNRIIFRGAQNPERLKSLKDSRFPFSIMWIEELAEFKTEDEVTTI 149 Query: 147 VES-IRGSYDSPDFFKQITVTFNPWSERHWLKSTFFDEETKLNNTFSDTTTYRVNEWLDK 205 S +RG D F+K ++NP + + ++ + +NTF +TY N ++ K Sbjct: 150 TNSMLRGELDDGLFYK-FFFSYNPPKRKQSWVNKKYETSFQPDNTFVHHSTYLDNPFISK 208 Query: 206 VDIERYEDLYIKNPRRARIVCDGDWGVAEGLV-FDNFKVTDFDWREKFKRTQEIAHGMDF 264 I+ E +N +R R G+ + G+V F+N ++ + +K I + +DF Sbjct: 209 QFIQEAESAKERNEQRYRWEYMGE-AIGSGVVPFNNLQIEKIP-DDLYKTFDNIRNAVDF 266 Query: 265 GFTFDPTTLINTVVDLKNKELWIYDEHSEKAMLTDDIINMIKRKGYQDAHIVADSAEKRL 324 G+ DP + D K + ++ DEH + + N +KR+GYQ I ADSAE + Sbjct: 267 GYATDPLAFVRWHYDKKKRIIYAVDEHYGVQISNREFANWLKRRGYQSDEIYADSAEPKS 326 Query: 325 ITEISRK-GVPNIKPSVKGANTIMQGVQFIQGF-KVYVHPSCVHTI-EELNTYTFDQDSE 381 I E+ ++ G+ IK KG +++ G Q++ + + P+ I E ++ D + Sbjct: 327 IAELKQEHGIKRIKGVKKGPDSVEHGEQWLDDLTAIVIDPNRTPNIAREFENIDYETDKD 386 Query: 382 GNWINKPIDKNNHLMDALRYSLEK 405 GN + DK+NH +DA RY+LE+ Sbjct: 387 GNVKPRLEDKDNHTIDATRYALER 410 >gi|4983|lcl|protein:vir:95058 Length: 421 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1549 # MgeName: X2 # Cross-refs: genbank:acc:YP_240816;genbank:gi:66394679;genbank:GeneID :5133852 Length = 421 Score = 159 bits (403), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 118/384 (30%), Positives = 196/384 (51%), Gaps = 9/384 (2%) Query: 27 VVKGSRGSKKSKTTAINFIYRIMKYDWANILVVRRFSNTNKQSTYTDLKWATNQLGVAHL 86 V KG RGS KS +I IM+Y N +V+R+ NT S + +KWA + V+HL Sbjct: 31 VAKGGRGSGKSSDISIIITQLIMRYP-MNAVVIRKTDNTLATSVFEQIKWAIEEQKVSHL 89 Query: 87 FKFNESLPEITYKPTGQKILFRGLDDPLKITSITVDTGILCWAWFEEAYQIETFAKFSTV 146 FK S EITY P G +I+FRG +P ++ S+ +W EE + +T + +T+ Sbjct: 90 FKVKVSPMEITYIPRGNRIIFRGAQNPERLKSLKDSRFPFSISWIEELAEFKTEDEVTTI 149 Query: 147 VES-IRGSYDSPDFFKQITVTFNPWSERHWLKSTFFDEETKLNNTFSDTTTYRVNEWLDK 205 S +RG D F+K ++NP + + ++ + +NT+ +TY N ++ K Sbjct: 150 TNSLLRGELDEGLFYK-FFFSYNPPKRKQSWVNKKYESSFQADNTYVHHSTYLNNPFISK 208 Query: 206 VDIERYEDLYIKNPRRARIVCDGDWGVAEGLV-FDNFKVTDFDWREKFKRTQEIAHGMDF 264 I+ E +N +R R G+ + G+V F+N ++ + R+ + I + +DF Sbjct: 209 QFIQEAESAKKRNEQRYRWEYMGE-AIGSGVVPFNNLRIEEIPQRQ-YDTFDNIRNAVDF 266 Query: 265 GFTFDPTTLINTVVDLKNKELWIYDEHSEKAMLTDDIINMIKRKGYQDAHIVADSAEKRL 324 G+ DP + D K + ++ DEH + + N +K+KGYQ + ADSAE + Sbjct: 267 GYATDPLAFVRWHYDKKKRVIYAMDEHYGVQISNREFANWLKKKGYQSDEVFADSAEPKS 326 Query: 325 ITEISRK-GVPNIKPSVKGANTIMQGVQFIQGF-KVYVHPSCVHTI-EELNTYTFDQDSE 381 I E+ ++ G+ IK KGA+++ G Q++ + + P I E ++ D + Sbjct: 327 IAELKQEHGIKKIKGVKKGADSVEFGEQWLDDLDAIVIDPRRTPNIAREFENIDYETDKD 386 Query: 382 GNWINKPIDKNNHLMDALRYSLEK 405 GN K DK+NH +DA RY+LE+ Sbjct: 387 GNVKPKLEDKDNHTIDATRYALER 410 >gi|10354|lcl|protein:vir:97448 Length: 421 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1676 # MgeName: 92 # Cross-refs: genbank:acc:YP_240743;genbank:gi:66396415;genbank:GeneID :5133804 Length = 421 Score = 159 bits (401), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 119/384 (30%), Positives = 196/384 (51%), Gaps = 9/384 (2%) Query: 27 VVKGSRGSKKSKTTAINFIYRIMKYDWANILVVRRFSNTNKQSTYTDLKWATNQLGVAHL 86 V KG RGS KS +I IM+Y N +V+R+ NT S + +KWA + V+HL Sbjct: 31 VAKGGRGSGKSSDISIIITQLIMRYP-MNAVVIRKTDNTLATSVFEQIKWAIEEQKVSHL 89 Query: 87 FKFNESLPEITYKPTGQKILFRGLDDPLKITSITVDTGILCWAWFEEAYQIETFAKFSTV 146 FK S EITY P G +I+FRG +P ++ S+ AW EE + +T + +T+ Sbjct: 90 FKVKVSPMEITYIPRGNRIIFRGAQNPERLKSLKDSRFPFSIAWIEELAEFKTEDEVTTI 149 Query: 147 VES-IRGSYDSPDFFKQITVTFNPWSERHWLKSTFFDEETKLNNTFSDTTTYRVNEWLDK 205 S +RG D F+K ++NP + + ++ + +NT+ +TY N ++ K Sbjct: 150 TNSLLRGELDEGLFYK-FFFSYNPPKRKQSWVNKKYESSFQADNTYVHHSTYLNNPFISK 208 Query: 206 VDIERYEDLYIKNPRRARIVCDGDWGVAEGLV-FDNFKVTDFDWREKFKRTQEIAHGMDF 264 I+ E +N +R R G+ + G+V F+N ++ + R+ + I + +DF Sbjct: 209 QFIQEAESAKKRNEQRYRWEYMGE-AIGSGVVPFNNLRIEEIPQRQ-YDTFDNIRNAVDF 266 Query: 265 GFTFDPTTLINTVVDLKNKELWIYDEHSEKAMLTDDIINMIKRKGYQDAHIVADSAEKRL 324 G+ DP + D K + ++ DE+ + + N +K+KGYQ I ADSAE + Sbjct: 267 GYATDPLAFVRWHYDKKKRVIYAMDEYYGVQISNREFANWLKKKGYQSDEIFADSAEPKS 326 Query: 325 ITEISRK-GVPNIKPSVKGANTIMQGVQFIQGF-KVYVHPSCVHTI-EELNTYTFDQDSE 381 I E+ ++ G+ IK KGA+++ G Q++ + + P I E ++ D + Sbjct: 327 IAELKQEHGIKKIKGVKKGADSVEFGEQWLDDLDAIVIDPRRTPNIAREFENIDYETDKD 386 Query: 382 GNWINKPIDKNNHLMDALRYSLEK 405 GN K DK+NH +DA RY+LE+ Sbjct: 387 GNVKPKLEDKDNHTIDATRYALER 410 >gi|3182|lcl|protein:vir:94499 Length: 421 # NCBI annotation: ORF008 # Family: family:all:54 # MgeID: mge:1508 # MgeName: 88 # Cross-refs: genbank:acc:YP_240671;genbank:gi:66396341;genbank:GeneID :5133763 Length = 421 Score = 159 bits (401), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 119/384 (30%), Positives = 196/384 (51%), Gaps = 9/384 (2%) Query: 27 VVKGSRGSKKSKTTAINFIYRIMKYDWANILVVRRFSNTNKQSTYTDLKWATNQLGVAHL 86 V KG RGS KS +I IM+Y N +V+R+ NT S + +KWA + V+HL Sbjct: 31 VAKGGRGSGKSSDISIIITQLIMRYP-MNAVVIRKTDNTLATSVFEQIKWAIEEQKVSHL 89 Query: 87 FKFNESLPEITYKPTGQKILFRGLDDPLKITSITVDTGILCWAWFEEAYQIETFAKFSTV 146 FK S EITY P G +I+FRG +P ++ S+ AW EE + +T + +T+ Sbjct: 90 FKVKVSPMEITYIPRGNRIIFRGAQNPERLKSLKDSRFPFSIAWIEELAEFKTEDEVTTI 149 Query: 147 VES-IRGSYDSPDFFKQITVTFNPWSERHWLKSTFFDEETKLNNTFSDTTTYRVNEWLDK 205 S +RG D F+K ++NP + + ++ + +NT+ +TY N ++ K Sbjct: 150 TNSLLRGELDEGLFYK-FFFSYNPPKRKQSWVNKKYESSFQADNTYVHHSTYLNNPFISK 208 Query: 206 VDIERYEDLYIKNPRRARIVCDGDWGVAEGLV-FDNFKVTDFDWREKFKRTQEIAHGMDF 264 I+ E +N +R R G+ + G+V F+N ++ + R+ + I + +DF Sbjct: 209 QFIQEAESAKKRNEQRYRWEYMGE-AIGSGVVPFNNLRIEEIPQRQ-YDTFDNIRNAVDF 266 Query: 265 GFTFDPTTLINTVVDLKNKELWIYDEHSEKAMLTDDIINMIKRKGYQDAHIVADSAEKRL 324 G+ DP + D K + ++ DE+ + + N +K+KGYQ I ADSAE + Sbjct: 267 GYATDPLAFVRWHYDKKKRVIYAMDEYYGVQISNREFANWLKKKGYQSDEIFADSAEPKS 326 Query: 325 ITEISRK-GVPNIKPSVKGANTIMQGVQFIQGF-KVYVHPSCVHTI-EELNTYTFDQDSE 381 I E+ ++ G+ IK KGA+++ G Q++ + + P I E ++ D + Sbjct: 327 IAELKQEHGIKKIKGVKKGADSVEFGEQWLDDLDAIVIDPRRTPNIAREFENIDYETDKD 386 Query: 382 GNWINKPIDKNNHLMDALRYSLEK 405 GN K DK+NH +DA RY+LE+ Sbjct: 387 GNVKPKLEDKDNHTIDATRYALER 410 >gi|6284|lcl|protein:vir:95890 Length: 421 # NCBI annotation: ORF008 # Family: family:all:54 # MgeID: mge:1588 # MgeName: 71 # Cross-refs: genbank:acc:YP_240381;genbank:gi:66396048;genbank:GeneID :5133401 Length = 421 Score = 158 bits (400), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 118/384 (30%), Positives = 196/384 (51%), Gaps = 9/384 (2%) Query: 27 VVKGSRGSKKSKTTAINFIYRIMKYDWANILVVRRFSNTNKQSTYTDLKWATNQLGVAHL 86 + KG RGS KS +I IM+Y N +V+R+ NT S + +KWA + V+HL Sbjct: 31 IAKGGRGSGKSSDISIIITQLIMRYP-MNAVVIRKTDNTLATSVFEQIKWAIEEQKVSHL 89 Query: 87 FKFNESLPEITYKPTGQKILFRGLDDPLKITSITVDTGILCWAWFEEAYQIETFAKFSTV 146 FK S EITY P G +I+FRG +P ++ S+ AW EE + +T + +T+ Sbjct: 90 FKVKVSPMEITYIPRGNRIIFRGAQNPERLKSLKDSRFPFSVAWIEELAEFKTEDEVTTI 149 Query: 147 VES-IRGSYDSPDFFKQITVTFNPWSERHWLKSTFFDEETKLNNTFSDTTTYRVNEWLDK 205 S +RG D F+K ++NP + + ++ + +NTF +TY N ++ K Sbjct: 150 TNSLLRGELDEGLFYK-FFFSYNPPKRKQSWVNKKYESSFQADNTFVHHSTYLNNPFISK 208 Query: 206 VDIERYEDLYIKNPRRARIVCDGDWGVAEGLV-FDNFKVTDFDWREKFKRTQEIAHGMDF 264 I+ E +N +R R G+ + G+V F+N ++ + + ++ I + +DF Sbjct: 209 QFIQEAESAKKRNEQRYRWEYMGE-AIGSGVVPFNNLRIEEIP-QGQYDTFDNIRNAVDF 266 Query: 265 GFTFDPTTLINTVVDLKNKELWIYDEHSEKAMLTDDIINMIKRKGYQDAHIVADSAEKRL 324 G+ DP + D K + ++ DEH + + N +K+KGYQ I ADSAE + Sbjct: 267 GYATDPLAFVRWHYDKKKRVIYAMDEHYGVQISNREFANWLKKKGYQSDEIFADSAEPKS 326 Query: 325 ITEISRK-GVPNIKPSVKGANTIMQGVQFIQGFK-VYVHPSCVHTI-EELNTYTFDQDSE 381 I E+ ++ G+ +K KGA+++ G Q++ + + + P I E + D + Sbjct: 327 IAELKQEHGIKKVKAVKKGADSVEYGEQWLDDLEAIVIDPRRTPNIAREFENIDYQTDKD 386 Query: 382 GNWINKPIDKNNHLMDALRYSLEK 405 GN K DK+NH +DA RY+LE+ Sbjct: 387 GNVKPKLEDKDNHAIDATRYALER 410 >gi|10483|lcl|protein:vir:105297 Length: 446 # NCBI annotation: putative large terminase subunit # Family: family:all:54 # MgeID: mge:1679 # MgeName: PH15 # Cross-refs: genbank:acc:YP_950664;genbank:gi:119967835;genbank:GeneI D:4643176 Length = 446 Score = 158 bits (399), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 121/410 (29%), Positives = 194/410 (47%), Gaps = 35/410 (8%) Query: 27 VVKGSRGSKKSKTTAINFIYRIMKYDWANILVVRRFSNTNKQSTYTDLKWATNQLGVAHL 86 V KG RGS KS +I IM+Y N +VVR+ NT S + +KWA + V+HL Sbjct: 30 VAKGGRGSGKSSDISIIITQLIMRYP-MNAVVVRKADNTLATSVFEQIKWAIEEQKVSHL 88 Query: 87 FKFNESLPEITYKPTGQKILFRGLDDPLKITSITVDTGILCWAWFEEAYQIETFAKFSTV 146 FK S EITY P G +I+FRG +P ++ S+ W EE + +T + +T+ Sbjct: 89 FKVKVSPMEITYVPRGNRIIFRGAQNPERLKSLKDSRFPFSIMWIEELAEFKTEDEVTTI 148 Query: 147 VES-IRGSYDSPDFFKQITVTFNPWSERHWLKSTFFDEETKLNNTFSDTTTYRVNEWLDK 205 S +RG D F+K ++NP + + ++ + +NTF +TY N ++ K Sbjct: 149 TNSMLRGELDDGLFYK-FFFSYNPPKRKQSWVNKKYETSFQPDNTFVHHSTYLDNPFISK 207 Query: 206 VDIERYEDLYIKNPRRARIVCDGDWGVAEGLV-FDNFKVTDFDWREKFKRTQEIAHGMDF 264 I+ E +N +R R G+ + G+V F+N ++ E +K I + +DF Sbjct: 208 QFIQEAESAKERNEQRYRWEYMGE-AIGSGVVPFNNLQIEKIP-DELYKSFDNIRNAVDF 265 Query: 265 GFT--------------------------FDPTTLINTVVDLKNKELWIYDEHSEKAMLT 298 G T DP + D K + ++ DEH + Sbjct: 266 GLTKTAPLHSDVYSKLGEHISGVRKKACATDPLAFVRWHYDKKKRIIYAVDEHYGVQISN 325 Query: 299 DDIINMIKRKGYQDAHIVADSAEKRLITEISRK-GVPNIKPSVKGANTIMQGVQFIQGF- 356 + N +KR+GYQ I ADSAE + I E+ ++ G+ IK KG +++ G Q++ Sbjct: 326 REFANWLKRRGYQSDEIYADSAEPKSIAELKQEHGIKRIKGVKKGPDSVEHGEQWLDDLT 385 Query: 357 KVYVHPSCVHTI-EELNTYTFDQDSEGNWINKPIDKNNHLMDALRYSLEK 405 + + P+ I E ++ D +GN + DK+NH +DA RY+LE+ Sbjct: 386 AIVIDPNRTPNIAREFENIDYETDKDGNVKPRLEDKDNHTIDATRYALER 435 >gi|7569|lcl|protein:vir:96300 Length: 421 # NCBI annotation: ORF008 # Family: family:all:54 # MgeID: mge:1612 # MgeName: ROSA # Cross-refs: genbank:acc:YP_240307;genbank:gi:66395973;genbank:GeneID :5133377 Length = 421 Score = 157 bits (398), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 118/384 (30%), Positives = 195/384 (50%), Gaps = 9/384 (2%) Query: 27 VVKGSRGSKKSKTTAINFIYRIMKYDWANILVVRRFSNTNKQSTYTDLKWATNQLGVAHL 86 + KG RGS KS +I IM+Y N +V+R+ NT S + +KWA + V HL Sbjct: 31 IAKGGRGSGKSSDISIIITQLIMRYP-MNAVVIRKTDNTLATSVFEQIKWAIEEQKVTHL 89 Query: 87 FKFNESLPEITYKPTGQKILFRGLDDPLKITSITVDTGILCWAWFEEAYQIETFAKFSTV 146 FK S EITY P G +I+FRG +P ++ S+ AW EE + +T + +T+ Sbjct: 90 FKVKVSPMEITYIPRGNRIIFRGAQNPERLKSLKDSRFPFSIAWIEELAEFKTEDEVTTI 149 Query: 147 VES-IRGSYDSPDFFKQITVTFNPWSERHWLKSTFFDEETKLNNTFSDTTTYRVNEWLDK 205 S +RG D F+K ++NP + + ++ + +NTF +TY N ++ K Sbjct: 150 TNSLLRGELDEGLFYK-FFFSYNPPKRKQSWVNKKYESSFQADNTFVHHSTYLNNPFISK 208 Query: 206 VDIERYEDLYIKNPRRARIVCDGDWGVAEGLV-FDNFKVTDFDWREKFKRTQEIAHGMDF 264 I+ E +N +R R G+ + G+V F+N ++ + + ++ I + +DF Sbjct: 209 QFIQEAESAKKRNEQRYRWEYMGE-AIGSGVVPFNNLRIEEIP-QGQYDTFDNIRNAVDF 266 Query: 265 GFTFDPTTLINTVVDLKNKELWIYDEHSEKAMLTDDIINMIKRKGYQDAHIVADSAEKRL 324 G+ DP + D K + ++ DEH + + N +K+KGYQ I ADSAE + Sbjct: 267 GYATDPLAFVRWHYDKKKRVIYAMDEHYGVQISNREFANWLKKKGYQSDEIFADSAEPKS 326 Query: 325 ITEISRK-GVPNIKPSVKGANTIMQGVQFIQGFK-VYVHPSCVHTI-EELNTYTFDQDSE 381 I E+ ++ G+ +K KGA+++ G Q++ + + + P I E + D + Sbjct: 327 IAELKQEHGIKKVKAVKKGADSVEYGEQWLDDLEAIVIDPRRTPNIAREFENIDYQTDKD 386 Query: 382 GNWINKPIDKNNHLMDALRYSLEK 405 GN K DK+NH +DA RY+LE+ Sbjct: 387 GNVKPKLEDKDNHAIDATRYALER 410 >gi|8730|lcl|protein:vir:96840 Length: 421 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1642 # MgeName: EW # Cross-refs: genbank:acc:YP_240151;genbank:gi:66395816;genbank:GeneID :5133181 Length = 421 Score = 147 bits (371), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 111/363 (30%), Positives = 179/363 (49%), Gaps = 9/363 (2%) Query: 48 IMKYDWANILVVRRFSNTNKQSTYTDLKWATNQLGVAHLFKFNESLPEITYKPTGQKILF 107 IM+Y N +VVR+ NT S + +KWA Q V+HLFK S EITY P G +I+F Sbjct: 52 IMRYP-MNAVVVRKTDNTLATSVFEQIKWAIEQQKVSHLFKVKVSPMEITYMPRGNRIIF 110 Query: 108 RGLDDPLKITSITVDTGILCWAWFEEAYQIETFAKFSTVVES-IRGSYDSPDFFKQITVT 166 RG +P ++ S+ W EE + +T + +T+ S +RG D F+K + Sbjct: 111 RGAQNPERLKSLKDSRFPFSIMWIEELAEFKTEDEVTTITNSMLRGELDEGLFYK-FFFS 169 Query: 167 FNPWSERHWLKSTFFDEETKLNNTFSDTTTYRVNEWLDKVDIERYEDLYIKNPRRARIVC 226 +NP + + ++ + +NTF +TY N ++ K I+ E +N R R Sbjct: 170 YNPPKRKQSWVNKKYESSFQPDNTFVHHSTYLDNPFIAKQFIDEAEAAKERNELRYRWEY 229 Query: 227 DGDWGVAEGLV-FDNFKVTDFDWREKFKRTQEIAHGMDFGFTFDPTTLINTVVDLKNKEL 285 G+ + G+V F+N ++ E F+ I + +DFG+ DP + D K + + Sbjct: 230 LGE-AIGSGVVPFNNLQIEKIP-DELFRSFDNIRNAVDFGYATDPLAFVRWHYDKKKRVI 287 Query: 286 WIYDEHSEKAMLTDDIINMIKRKGYQDAHIVADSAEKRLITEISRK-GVPNIKPSVKGAN 344 + DE+ + + KGYQ I ADSAE + I E+ ++ G+ IK KG + Sbjct: 288 YAVDEYYGVQISNRQFGKWLWSKGYQSDDIYADSAEPKSIDELRKEHGIKRIKGVKKGPD 347 Query: 345 TIMQGVQFIQGF-KVYVHPSCVHTI-EELNTYTFDQDSEGNWINKPIDKNNHLMDALRYS 402 ++ G Q++ + + P+ I E F+ D +GN K DK+NH +DA RY+ Sbjct: 348 SVEYGEQWLNDLDAIVIDPNRTPNIAREFENIDFETDKDGNVKPKLEDKDNHTIDATRYA 407 Query: 403 LEK 405 LE+ Sbjct: 408 LER 410 >gi|18074|lcl|protein:vir:5954 Length: 422 # NCBI annotation: hypothetical protein # Family: family:all:54 # MgeID: mge:125 # MgeName: SPP1 # Cross-refs: genbank:acc:NP_690654;genbank:geneid:6329138;genbank:gi: 22855048;goa:P54308;interpro:IPR006437;interpro:IPR00670 1;interpro:IPR011441;uniprot:P54308;genbank:GeneID:95525 4 Length = 422 Score = 145 bits (366), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 111/384 (28%), Positives = 184/384 (47%), Gaps = 7/384 (1%) Query: 27 VVKGSRGSKKSKTTAINFIYRIMKYDWANILVVRRFSNTNKQSTYTDLKWATNQLGVAHL 86 V+KG RGS KS A+ I +M LV+RR NT +QS + LK A + L V HL Sbjct: 30 VLKGGRGSAKSTHIAMWIILLMMMMP-ITFLVIRRVYNTVEQSVFEQLKEAIDMLEVGHL 88 Query: 87 FKFNESLPEITYKPTGQKILFRGLDDPLKITSITVDTGILCWAWFEEAYQIETFAKFSTV 146 +K ++S +TY P G I+FRG DD KI SI + W EE + +T + S + Sbjct: 89 WKVSKSPLRLTYIPRGNSIIFRGGDDVQKIKSIKASKFPVAGMWIEELAEFKTEEEVSVI 148 Query: 147 VESIRGSYDSPDFFKQITVTFNPWSERHWLKSTFFDEETKLNNTFSDTTTYRVNEWLDKV 206 +S+ + P ++NP + + F+ NTF D +TY N +L K Sbjct: 149 EKSVLRAELPPGCRYIFFYSYNPPKRKQSWVNKVFNSSFLPANTFVDHSTYLQNPFLSKA 208 Query: 207 DIERYEDLYIKNPRRARIVCDGDWGVAEGLV-FDNFKVTD-FDWREKFKRTQEIAHGMDF 264 IE E++ +N + R G+ + G+V F+N ++ + + R I G+DF Sbjct: 209 FIEEAEEVKRRNELKYRHEYLGE-ALGSGVVPFENLQIEEGIITDAEVARFDNIRQGLDF 267 Query: 265 GFTFDPTTLINTVVDLKNKELWIYDEHSEKAMLTDDIINMIKRKGYQDAHIVADSAEKRL 324 G+ DP + D + ++ DE + + + +++ Y+ A I+ADS+E R Sbjct: 268 GYGPDPLAFVRWHYDKRKNRIYAIDELVDHKVSLKRTADFVRKNKYESARIIADSSEPRS 327 Query: 325 ITEIS-RKGVPNIKPSVKGANTIMQGVQFIQGF-KVYVHPSCVHTI-EELNTYTFDQDSE 381 I + G+ I+ + KG +++ G +++ + + P I E + D Sbjct: 328 IDALKLEHGINRIEGAKKGPDSVEHGERWLDELDAIVIDPLRTPNIAREFENIDYQTDKN 387 Query: 382 GNWINKPIDKNNHLMDALRYSLEK 405 G+ I + DK+NH +DA RY+ E+ Sbjct: 388 GDPIPRLEDKDNHTIDATRYAFER 411 >gi|10799|lcl|protein:vir:78055 Length: 440 # NCBI annotation: TerL # Family: family:all:54 # MgeID: mge:1844 # MgeName: P35 # Cross-refs: genbank:acc:YP_001468786;genbank:gi:157325367;genbank:Ge neID:5601817 Length = 440 Score = 94.0 bits (232), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 110/398 (27%), Positives = 179/398 (44%), Gaps = 34/398 (8%) Query: 28 VKGSRGSKKSKTTAINFIYRIMKYDWANILVVRRFSNTNKQSTYTDLKWATNQLGVAHLF 87 +KG RGS KS A+ + IMK AN ++ R+ + + +WA +QLGV+ + Sbjct: 48 MKGGRGSGKSSFVALMVVDEIMKDPQANAVIFRKVDEGMRTTLLPQYQWAIDQLGVSGAW 107 Query: 88 KFNESLPEITYK--PTG--QKILFRGLDDPLKITSITVDTGILCWAWFEEAYQIETFAKF 143 + + + YK TG Q+I F+G+ DP ++ + G + +EEA + E+ F Sbjct: 108 RTSLQPMMLLYKNPETGLEQQIRFKGVKDPKRVKASKFRVGYAKYLIYEEADEYESEEDF 167 Query: 144 STVVESI---RGSYDSPDFFKQITVTFNPWSER-HWLKS---TFFDEETKL--NNTFSDT 194 S V S G+ DS F+ +NP + HWL + DE ++ ++TF Sbjct: 168 SIVNSSYMRGEGTGDSRAFY-----LYNPPKYKGHWLNNWVDVIRDEPSQYVHHSTFIPI 222 Query: 195 TTYRVNEWLDKVDIERYEDLYIKNPRRARIVCDGDWGVAEGLVFDNF--KVTDFDWREKF 252 + EWL +E + KNP R G VF N + FD + Sbjct: 223 ALHH-PEWLGSTWLESARLVRDKNPNRYEWEFLGRNVNTGNEVFPNAVQEHITFDMIDGL 281 Query: 253 KRTQEIAHGMDFGFTFDPTTLINTVVDLKNKELWIYDEHSEK----AMLTDDIINMIKRK 308 + + G D G+T DP+ + D + ++I DE K L DI+N ++ Sbjct: 282 RPYE----GFDEGYTADPSVWLRVFYDEQRDTVYITDELVMKRYKTKALAKDILN-VQEG 336 Query: 309 GYQDAHIVADSAEKRLITEISRKGVPNIKPSVKGANTIMQGVQFIQG-FKVYVHPSCVHT 367 Y + DSA R++ E+ GV + S K N++ G ++ K+ + C +T Sbjct: 337 SYN--IVRGDSANPRVLDEMRDLGVNALAVS-KSPNSVPHGTNWLANRIKIVIDFKCPNT 393 Query: 368 IEELNTYTFDQDSEGNWINKPIDKNNHLMDALRYSLEK 405 E ++Y D GN + DK+NH +D RY+LE+ Sbjct: 394 WREFSSYALLPDGVGNRKHGFPDKDNHTIDTTRYALEE 431 >gi|15836|lcl|protein:vir:37 Length: 443 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:2 # MgeName: A118 # Cross-refs: genbank:acc:NP_463463;swissprot:trembl:q9t1c1;genbank:gi :16798785;goa:Q9T1C1;uniprot:Q9T1C1;genbank:GeneID:92238 4 Length = 443 Score = 93.6 bits (231), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 58/206 (28%), Positives = 103/206 (50%), Gaps = 12/206 (5%) Query: 2 YEILDLKNKIGGGYNKFWHNKSFYRVVKGSRGSKKSKTTAINFIYRIMKYDWANILVVRR 61 Y+I+++ + I + W +K + + KG R S KS ++ + + M +N++ +R+ Sbjct: 12 YQIINVIDMINPAFYDLWLSKHNHIIAKGGRSSMKSSVISLKLVEKKMANPMSNMVCLRK 71 Query: 62 FSNTNKQSTYTDLKWATNQLGVAHLFKFNESLPEITYKPTGQKILFRGLDDPLKITSITV 121 +NT +S Y +KWA ++GVA FKF +S EI +K G F G DDP K+ S+ + Sbjct: 72 VANTLYKSVYQQIKWALYEMGVADQFKFGKSPMEIVHKTWGTGFYFSGCDDPAKLKSMKI 131 Query: 122 DTGILCWAWFEEAYQIETFAKFSTV--VESIRGSYDSPDFFK----QITVTFNPWSERHW 175 G + WFEE A+FS V ++ + ++ D + I ++FNP + Sbjct: 132 PVGYVSGLWFEE------LAEFSGVTDIDVVEDTFIREDLPQGQEVTIYMSFNPPRNPYE 185 Query: 176 LKSTFFDEETKLNNTFSDTTTYRVNE 201 + + D + ++ TTY +E Sbjct: 186 WVNEYVDSKRSDDDYLIHHTTYLDDE 211 Score = 22.7 bits (47), Expect = 8.3, Method: Compositional matrix adjust. Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 10/64 (15%) Query: 231 GVAEGLVFDNFK----VTDFD------WREKFKRTQEIAHGMDFGFTFDPTTLINTVVDL 280 G GL F+ VTD D RE + QE+ M F +P +N VD Sbjct: 134 GYVSGLWFEELAEFSGVTDIDVVEDTFIREDLPQGQEVTIYMSFNPPRNPYEWVNEYVDS 193 Query: 281 KNKE 284 K + Sbjct: 194 KRSD 197 >gi|13020|lcl|protein:vir:80960 Length: 443 # NCBI annotation: TerL # Family: family:all:54 # MgeID: mge:1886 # MgeName: A500 # Cross-refs: genbank:acc:YP_001468388;genbank:gi:157324962;genbank:Ge neID:5601395 Length = 443 Score = 90.9 bits (224), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 56/206 (27%), Positives = 102/206 (49%), Gaps = 12/206 (5%) Query: 2 YEILDLKNKIGGGYNKFWHNKSFYRVVKGSRGSKKSKTTAINFIYRIMKYDWANILVVRR 61 Y+++++ + I + W +K + + KG R S KS ++ + + M +N++ +R+ Sbjct: 12 YQVINVTDMINPAFYDLWLSKHNHIIAKGGRSSMKSSVISLKLVEKKMANPMSNMVCLRK 71 Query: 62 FSNTNKQSTYTDLKWATNQLGVAHLFKFNESLPEITYKPTGQKILFRGLDDPLKITSITV 121 +NT +S Y +KWA ++GVA F F +S EI +K G F G DDP K+ S+ + Sbjct: 72 VANTLYKSVYQQIKWALYEMGVADQFNFGKSPMEIIHKEWGTGFYFSGCDDPAKLKSMKI 131 Query: 122 DTGILCWAWFEEAYQIETFAKFSTV--VESIRGSYDSPDFFK----QITVTFNPWSERHW 175 G + WFEE A+FS V ++ + ++ D + I ++FNP + Sbjct: 132 PVGYVSDLWFEE------LAEFSGVTDIDVVEDTFIREDLPQGQEVTIYMSFNPPRNPYE 185 Query: 176 LKSTFFDEETKLNNTFSDTTTYRVNE 201 + + D + ++ TTY +E Sbjct: 186 WVNEYVDSKRSDDDYLIHHTTYLDDE 211 >gi|8380|lcl|protein:vir:96782 Length: 408 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:1629 # MgeName: phiHSIC # Cross-refs: genbank:acc:YP_224236;genbank:gi:62362371;genbank:GeneID :3345721 Length = 408 Score = 83.2 bits (204), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 97/405 (23%), Positives = 167/405 (41%), Gaps = 66/405 (16%) Query: 25 YRVVKGSRGSKKSKTTAINFIYRIMKYDWA-----NILVVRRFSNTNKQSTYTDLK---- 75 +R GSRGS KS F + M W IL R + K+S + +LK Sbjct: 25 FRGAYGSRGSGKS------FNFAKMAAIWGAIEKMRILCTRELQVSIKESFHAELKNAIK 78 Query: 76 ---WATN--QLGVAHLFKFNESLPEITYKPTGQKILFRGLDDPLKITSITVDTGILCWAW 130 W ++ +G+ ++ N G + LF+GL + T + Sbjct: 79 SDEWLSSIYDVGIDYIRNNN----------NGTEFLFKGLRHGMGSVKSTAQIDLTI--- 125 Query: 131 FEEAYQIETFAKFSTVVESIRGSYDSPDFFK----QITVTFNPWSERHWLKSTFFDEETK 186 EEA + A + P F+ + V +NP + + F + K Sbjct: 126 VEEAEDVPENAWVELL----------PTIFRTDKAECWVIWNPRKKGSPVDKRF--RQFK 173 Query: 187 LNNTFSDTTTYRVNEWLDK--VDIERYEDLYIKNPRRARIVCDGDWGVAEGLVFDNFKVT 244 ++ Y N + K D+ R+++ + A + + E VF N+KV Sbjct: 174 PDDAVVVEMNYYDNPFFPKGLEDLRRHDEDTMPPELYAHVWLGAYYEHTEAQVFKNWKVE 233 Query: 245 DFD---WREKFKRTQEIAHGMDFGFTFDPTTLINTVVDLKNKELWIYDEHSEKAMLTDDI 301 + W + +G+DFGF+ DPT + L +++I E + + D Sbjct: 234 QVNTNGWEGPY-------YGLDFGFSQDPTAGVKCW--LNGNDVYIEKEAGKVGLEIDHT 284 Query: 302 IN-MIKR-KGYQDAHIVADSAEKRLITEISRKGVPNIKPSVKGANTIMQGVQFIQGFKVY 359 + +IKR G DA + ADSA I+ + R G+P I+ K ++ GV++++ +++ Sbjct: 285 ADYLIKRIDGIDDAKVYADSARPESISLLKRTGIPRIEGVPKWKGSVEDGVEWLRSKRIF 344 Query: 360 VHPSCVHTIEELNTYTFDQDS-EGNWINKPIDKNNHLMDALRYSL 403 + P C TI+E Y++ D G N+ +D NH +DA+RY Sbjct: 345 IDPECTETIKEFTYYSYKTDRYTGEIKNQLVDAYNHYIDAIRYCF 389 >gi|2819|lcl|protein:vir:105705 Length: 439 # NCBI annotation: gp2 # Family: family:all:54 # MgeID: mge:1501 # MgeName: ES18 # Cross-refs: genbank:acc:YP_224140;genbank:gi:62362215;genbank:GeneID :3342458 Length = 439 Score = 82.8 bits (203), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 114/431 (26%), Positives = 178/431 (41%), Gaps = 70/431 (16%) Query: 25 YRVVKGSRGSKKSKTTAINFIYRIMKYDWANI----LVVRRFSNTNKQSTYTDLKWATNQ 80 YR G RGS K++T A+ + + ANI L R + N+ ++S+ ++K A Sbjct: 24 YRGAHGGRGSAKTRTFALMTAVKAYQAAEANISGVILCAREYMNSLEESSMEEVKQAIRS 83 Query: 81 LG-VAHLFKFNESLPEITYKPTGQKILFRGLDDPLKITSITVDTGILCWAWFEEAYQIET 139 + + F E I K +F GL L SI IL AW +EA + + Sbjct: 84 VAWLDDYFDIGEKY--IRTKNRKVSYVFCGLRHNL--DSIKSKARILV-AWVDEAESVSS 138 Query: 140 FAKFSTVVESIRGSYDSPDFFKQITVTFNPWSERHWLKSTFFDEETKLNNTFSDTTTYRV 199 A + + ++R + +I VT+NP + F K ++ Y Sbjct: 139 TA-WKKLRPTVR------EEGSEIWVTWNPEKDGSATDKLFRKNPPK--SSMIVEMNYVD 189 Query: 200 NEWLDKV-DIERYEDLYIKNPRRARIVCDGDWGVAEGLVFDN---------FKVTDFD-- 247 N W V + ER EDL + D W + EG +N + V F+ Sbjct: 190 NPWFPAVLEEERQEDLANLD------YADYAW-IWEGAYLENSDKQVLANKYVVQSFEDN 242 Query: 248 -WREKFKRTQEIAHGMDFGFTFDPTTLINTVVDLKNKELWIYDEHSEKAMLTD------- 299 WR +++ + G DFGF DP+TLI + L N Y+ + L D Sbjct: 243 LWR----KSERLLFGADFGFAKDPSTLIRMFI-LDNNLYIEYEAYGNGVELDDMWKFYAG 297 Query: 300 ------------DIINMIKRKGYQDAH---IVADSAEKRLITEISRKGVPNIKPSVKGAN 344 + + K G +A I AD++ I+ I +G NI + K Sbjct: 298 KTDATPKQLKDWKVTDDTKFPGIPEARKWPIKADNSRPETISHIKGQGF-NISAAQKWQG 356 Query: 345 TIMQGVQFIQGF-KVYVHPSCVHTIEELNTYTFDQDS-EGNWINKPIDKNNHLMDALRYS 402 ++ G+ F++GF K+ +HP C T +E Y++ D G + DKNNH D +RY Sbjct: 357 SVEDGITFLRGFKKIIIHPRCKETAKEARLYSYKTDRITGEVLPIIEDKNNHCWDGIRYG 416 Query: 403 LEKYHIKLKKR 413 L+ Y IK K + Sbjct: 417 LDGY-IKCKPK 426 >gi|13903|lcl|protein:vir:9870 Length: 273 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:177 # MgeName: 315.5 # Cross-refs: genbank:acc:NP_795632;genbank:gi:28876409;genbank:GeneID :1257943 Length = 273 Score = 75.9 bits (185), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 65/257 (25%), Positives = 116/257 (45%), Gaps = 22/257 (8%) Query: 159 FFKQITVTFNPWSERHWLKSTFFDEETKLNNTFSDTTTYRVNEWLDKVDIERYEDLYIKN 218 F + T+NP + + ++ + + +NTF +TY+ N ++ K I E ++ Sbjct: 9 LFYKFFYTYNPPKRKQSWVNKKYESQFQPSNTFVHASTYKDNPFIAKEFIAEAEATRERS 68 Query: 219 PRRARIVCDGDWGVAEGLV-FDNFK--------VTDFDWREKFKRTQEIAHGMDFGFTFD 269 RR R G+ + G+V FDN + V DFD I +G+D+G+ D Sbjct: 69 ERRYRWEYLGE-AIGSGVVPFDNLRFERITDEQVADFD---------NIRNGIDYGYATD 118 Query: 270 PTTLINTVVDLKNKELWIYDEHSEKAMLTDDIINMIKRKGYQDAHIVADSAEKRLITEIS 329 P + D K ++ DE+ + + + + KGYQ + A+SAE + E+ Sbjct: 119 PLAFVRWHYDKKKNGIYAIDEYYGQKISNRQLAKWLTTKGYQSDEMFAESAEPKSNAELK 178 Query: 330 RK-GVPNIKPSVKGANTIMQGVQFIQGFK-VYVHPSCVHTI-EELNTYTFDQDSEGNWIN 386 + G+ IK KG +++ G +++ + + P I E + D +GN Sbjct: 179 NEFGIKRIKGVKKGPDSVEFGERWLDDLDFICIDPKRTPNIAREFENIDYQVDRDGNPKP 238 Query: 387 KPIDKNNHLMDALRYSL 403 + DK NH +DA RY++ Sbjct: 239 RLEDKVNHAIDATRYAM 255 >gi|19292|lcl|protein:vir:4781 Length: 436 # NCBI annotation: putative large terminase subunit # Family: family:all:54 # MgeID: mge:104 # MgeName: MM1 # Cross-refs: genbank:acc:NP_150161;swissprot:trembl:q94m50;genbank:gi :15088772;goa:Q94M50;uniprot:Q94M50;genbank:GeneID:95597 6 Length = 436 Score = 69.3 bits (168), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 63/217 (29%), Positives = 101/217 (46%), Gaps = 13/217 (5%) Query: 5 LDLKNKIGGGYNKFWHNKSFYRVVKGSRGSKKSKTTAINFIYRIMKY----DWANILVVR 60 +++ I + W + Y V+KG R S KS + Y +++Y + ANI+V+R Sbjct: 3 FNVQKNINPHFKSVWISSLPYNVLKGGRNSFKSSVIVLKLAYMMIRYIIAGEAANIVVIR 62 Query: 61 RFSNTNKQSTYTDLKWATNQLGVAHLFKFNESLPEITYKPTGQKILFRGLDDPLKITSIT 120 + +NT + S + + WA N G+A F S +I +K TG F G DD K+ S Sbjct: 63 KVANTIRDSVFNKVWWALNLFGIAEQFTKTVSPFKIVHKTTGSTFYFYGQDDFQKLKS-- 120 Query: 121 VDTGILCWAWFEEAYQIETFAKF-STVVESIRGSYDSPDFFKQITVTFNPWSERH-WLKS 178 D G + W+EEA + F + V +R + F Q ++NP + W+ Sbjct: 121 NDIGNIIPVWYEEAAEFNDQEDFDQSNVTFMRQKHPRAKFV-QFFWSYNPPRNPYSWINE 179 Query: 179 TFFDEETKLN-NTFSDTTTYRVNEWLDKVDIERYEDL 214 F E K N N + ++TY +E L V + ED+ Sbjct: 180 WF--ESIKTNKNYLAHSSTYLDDE-LGFVTEQMLEDI 213 >gi|1165|lcl|protein:vir:102941 Length: 421 # NCBI annotation: terminase, large subunit # Family: family:all:54 # MgeID: mge:1461 # MgeName: EJ-1 # Cross-refs: genbank:acc:NP_945278;genbank:gi:39653713;goa:Q708N4;int erpro:IPR004921;interpro:IPR006437;uniprot:Q708N4;genban k:GeneID:2672855 Length = 421 Score = 67.0 bits (162), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 97/401 (24%), Positives = 173/401 (43%), Gaps = 56/401 (13%) Query: 27 VVKGSRGSKKSKTTAINF-IYRIMKYDWANILVVRRFSNTNKQSTYTDLKWATNQLGVAH 85 + G+ S K+ + ++ F I+ + ++ N + + + ++ L G ++ Sbjct: 40 IADGAIRSGKTVSMSLAFVIWAMTSFNHQNFAMCGKTIGSFNRNVLKLLLVMIQSRGFSY 99 Query: 86 LFKFNESLPEITYKPTGQKI-LFRGLDDPLK--ITSITVDTGILCWAWFEE-AYQIETFA 141 ++ ++L EIT +F G D+ + I +T+ GI F+E A E+F Sbjct: 100 VYHRTDNLIEITKGDVSNDFYIFGGKDESSQDLIQGLTL-AGIF----FDEVALMPESFV 154 Query: 142 KFSTVVESIRGSYDSPDFFKQITVTFNPWSERHWLKSTFFDE-ETK--LNNTFSDTTTYR 198 T S+ GS + NP HW K + D+ ETK L F Sbjct: 155 NQGTGRCSVTGS--------KWWFNCNPDGPYHWFKVNWIDKAETKNMLYLHFDMDDNLS 206 Query: 199 VNEWLDKVDIERYEDLYIKNPRRARIVCDGDWGVAEGLVFDNFK-----VTDFDWREKFK 253 ++E + K +Y+ ++ + G W VAEG+V+D F V+ K Sbjct: 207 LSENIKKRYRSQYQGVFYQR------YIQGLWTVAEGIVYDMFSKDKHVVSTLPEMSKLG 260 Query: 254 RTQEIAHGMDFGFTFDPTTLINTVVDLKNKEL----WIY---DEHSEK--AMLTDDIINM 304 + + +G T + T + D+ K + Y DE+ +K A DD+ Sbjct: 261 KYVSVDYG-----TQNATVFLLWEKDIIGKYYLTREYYYSGRDENVQKTNAEYADDLTAW 315 Query: 305 IKRKGYQDAHIVADSAEKRLITEISRKGVPNIKPSVKGANTIMQGVQFIQGF----KVYV 360 + I+ D + I E+ ++G IK K N +++G++F+ K+ V Sbjct: 316 LGDTNID--RIIIDPSAASFIAELKKRGYK-IK---KARNNVLEGIRFVGSMLGQEKIAV 369 Query: 361 HPSCVHTIEELNTYTFDQDSEGNWINKPIDKNNHLMDALRY 401 H SCV+T++E + Y +D+ + N +KPI + +H MDALRY Sbjct: 370 HESCVNTLKEFHAYVWDEKASANGEDKPIKQFDHAMDALRY 410 >gi|5794|lcl|protein:vir:98922 Length: 453 # NCBI annotation: terminase large subunit # Family: family:all:54 # MgeID: mge:1568 # MgeName: BCJA1c # Cross-refs: genbank:acc:YP_164412;genbank:gi:56694902;genbank:GeneID :3197313 Length = 453 Score = 67.0 bits (162), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 66/129 (51%), Gaps = 4/129 (3%) Query: 4 ILDLKNKIGGGYNKFWHNKSFYRVVKGSRGSKKSKTTAINFIYRIMKY----DWANILVV 59 + +++ I + + W + Y ++KG R S KS A+ ++ ++ Y + AN++V+ Sbjct: 10 MFNVQENINPHFKEVWTSSKPYNILKGGRNSFKSSVIALKLVFMMLLYILKGEKANVVVI 69 Query: 60 RRFSNTNKQSTYTDLKWATNQLGVAHLFKFNESLPEITYKPTGQKILFRGLDDPLKITSI 119 R+ NT + S + ++WA G+ FK S +IT+K TG F G DD K+ S Sbjct: 70 RKVGNTIRDSVFNKIQWAIKLFGLTRRFKPTVSPFKITHKRTGSTFYFYGQDDFQKLKSN 129 Query: 120 TVDTGILCW 128 ++ I W Sbjct: 130 DIEDIIAVW 138 >gi|655|lcl|protein:vir:1588 Length: 447 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:32 # MgeName: phig1e # Cross-refs: genbank:acc:NP_695170;swissprot:trembl:o03927;genbank:gi :23455799;goa:O03927;interpro:IPR006437;interpro:IPR0067 01;interpro:IPR011441;uniprot:O03927;genbank:GeneID:9555 65 Length = 447 Score = 65.5 bits (158), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 51/206 (24%), Positives = 97/206 (47%), Gaps = 14/206 (6%) Query: 3 EILDLKNKIGGGYNKFWHNKSFYRVVKGSRGSKKSKTTAINFIY----RIMKYDWANILV 58 +++ + + I + + W Y V G RGS KS ++ + IM++ AN++ Sbjct: 13 KVIKISDLINPHFKRMWTTDKPYIVANGGRGSFKSSVISLKLVTMVKKAIMQHRKANVIA 72 Query: 59 VRRFSNTNKQSTYTDLKWATNQLGVAHLFKFNESLPEITYKPTGQKILFRGLDDPLKITS 118 V + + Y ++WA + L + + F +S I +K TG F G D+P K+ S Sbjct: 73 VLANKSDLHDTVYNQIQWALSMLDMDNEFIAYKSPLTIQHKRTGSSFYFYGADNPYKLKS 132 Query: 119 ITVDTGILCWAWFEEAYQIETFAKFSTVVESIRGSY--DSPDFFKQITV--TFNPWSERH 174 V G + W+EEA +++ S V + ++ P++ Q+ V ++NP + Sbjct: 133 NIV--GDVVAVWYEEAANMKS----SDVFDQANPTFIRQKPEWLDQVKVFYSYNPPKNPY 186 Query: 175 WLKSTFFDEETKLNNTFSDTTTYRVN 200 + + D+ +K +N DT+ YR + Sbjct: 187 DWINEWIDKVSKDDNYLIDTSDYRCD 212 >gi|6886|lcl|protein:vir:106551 Length: 424 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:1598 # MgeName: Lj965 # Cross-refs: genbank:acc:NP_958579;genbank:gi:41179257;genbank:GeneID :2717087 Length = 424 Score = 57.4 bits (137), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 68/289 (23%), Positives = 119/289 (41%), Gaps = 27/289 (9%) Query: 124 GILCWAWF--EEAYQIETFAKFSTVVESIRGSYDSPDFFKQITVTFNPWSERHWLKSTFF 181 GI +F E A ++F +T S+ GS ++ NP HW K + Sbjct: 129 GITLAGFFFDEVALMPQSFVNQATARCSVTGS--------KMWFNCNPSGPFHWFKLNWI 180 Query: 182 DEETKLNNTFSDTTTYRVNEWLDKVDIERYEDLYIKNPRRARIVCDGDWGVAEGLVFDNF 241 D+ K T N LD V I RYE +Y + I G W ++EG+++DNF Sbjct: 181 DQ-MKDKRALRIHFTMHDNPSLDSVTINRYERMYSGVFYQRYI--QGLWVMSEGVIYDNF 237 Query: 242 KVTDFDWREKFKRTQEIAHGMDFGFTFDPTTLI----NTVVDLKNKELWIYDEHSEKAML 297 E ++ D+G T +PT + N V KE + + + Sbjct: 238 DKDTMVVNELPNHFEKYYVSCDYG-TLNPTAFLLWGRNHGVWYLVKEYYYSGRTTSRQKT 296 Query: 298 TDDIINMIKR-KGYQDAHIVADSAEKRLITEISRKGVPNIKPSVKGANTIMQGVQFIQGF 356 ++ + +K G A ++ D + T + + G K N ++ G++ Q Sbjct: 297 DEEYCHDLKEFLGDIRAEMIIDPSAASFSTTLRQNGFK----VRKAKNDVLDGIRVTQTA 352 Query: 357 ----KVYVHPSCVHTIEELNTYTFDQDSEGNWINKPIDKNNHLMDALRY 401 K+ +C + +EL +Y +D + + +KP+ +++H DA+RY Sbjct: 353 MNEGKIKFSMNCPNLFKELASYVWDDKAAEHGEDKPVKQHDHACDAMRY 401 >gi|21526|lcl|protein:vir:104262 Length: 438 # NCBI annotation: terminase, large subunit # Family: family:all:147 # MgeID: mge:1504 # MgeName: T5 # Cross-refs: genbank:acc:YP_006983;genbank:gi:46401884;genbank:GeneID :2777679 Length = 438 Score = 55.8 bits (133), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 70/251 (27%), Positives = 103/251 (41%), Gaps = 31/251 (12%) Query: 174 HWLKSTF---FDEETKLNNTFSDTTTYRVNEWLDKVDIERYEDLYIKNPRRARIVCDGDW 230 +W K + FD+ L N S TYR N D DIE KN R + D+ Sbjct: 191 NWFKEFYAYGFDD--TLPNWVSIHGTYRDNPRADLNDIEEARRTVSKNYFRQEY--EADF 246 Query: 231 GVAEGLVFDNFKVTDF-----DWREKFKRTQ--EIAHGMDFGFTFDPTTLINTVVDLKNK 283 V EG +FD F D R FK + E G+D G+ DPT ++ Sbjct: 247 SVFEGQIFDTFNAIDHVKDLKGMRHFFKDDEAFETLLGIDVGYR-DPTAVLTIKYHYDTD 305 Query: 284 ELWIYDEHSEKAMLTDD----IINMIKRKGYQDAHIVADSAEKRLITEISRKGVPNIKPS 339 ++ +E+ + T I + I R Y+ I DSA + +++ + P+ Sbjct: 306 TYYVLEEYQQAEKTTAQHAAYIQHCIDR--YKVDRIFVDSAAAQFRQDLAYEHEIASAPA 363 Query: 340 VKGANTIMQGVQFIQGF----KVYVHPSCVHTIEELNTYT--FDQDSEGNWINKPI-DKN 392 K +++ G+ +Q K+ V SC I L Y F + E KP D N Sbjct: 364 KK---SVLDGLACLQALFQQGKIIVDASCSSLIHALQNYKWDFQEGEEKLSREKPRHDAN 420 Query: 393 NHLMDALRYSL 403 +HL DALRY + Sbjct: 421 SHLCDALRYGI 431 >gi|4914|lcl|protein:vir:99572 Length: 459 # NCBI annotation: TerL-like protein # Family: family:all:54 # MgeID: mge:1544 # MgeName: BcepF1 # Cross-refs: genbank:acc:YP_001039811;genbank:gi:126011061;genbank:Ge neID:4818267 Length = 459 Score = 51.6 bits (122), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 57/213 (26%), Positives = 90/213 (42%), Gaps = 19/213 (8%) Query: 18 FWHNKSFYRVVKGSRGSKKSKTTAINFIYRIMKYDWANILVVRRFSNTNKQSTYTDLKWA 77 FW +K+ Y+ + G R S KS A +Y Y L R+F N +S YT +K Sbjct: 11 FWLDKARYKALYGGRASSKSHDAAGFAVYLARNYT-VKFLCARQFQNKISESVYTLIKGK 69 Query: 78 TNQLGVAHLFKFNESLPEITYKPTGQKILFRGLDDPLKITSITVDTGILCWAWFEEAYQI 137 + G +F+ ++ I +K TG + LF G+ L T IL W EEA Q Sbjct: 70 IDAAGWTK--EFDVTISSIRHKKTGAEFLFYGIARNLNEIKSTEGVDIL---WLEEA-QY 123 Query: 138 ETFAKFSTVVESIR--GSYDSPDFFKQITVTFNPWSERHWLKSTFFDEETKLNNTFSDTT 195 T +++ + +IR GS QI + +NP ++ F + S Sbjct: 124 LTEEQWNVINPTIRREGS--------QIWLIWNPDQYTDFIYQNFVVNPPA--DCLSKQI 173 Query: 196 TYRVNEWLDKVDIERYEDLYIKNPRRARIVCDG 228 + N +L ++ D Y ++P+ A V G Sbjct: 174 NWTENPFLSDTMLKVIYDEYQRDPKLAEHVYGG 206 >gi|5142|lcl|protein:vir:105417 Length: 470 # NCBI annotation: gene 2 protein # Family: family:all:54 # MgeID: mge:1556 # MgeName: Sf6 # Cross-refs: genbank:acc:NP_958178;genbank:gi:41057280;genbank:GeneID :2716664 Length = 470 Score = 43.9 bits (102), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 67/147 (45%), Gaps = 17/147 (11%) Query: 25 YRVVKGSRGSKKSKTTAINFIYRIMKYDWANILVVRRFSNTNKQSTYTDLKWATNQLGVA 84 Y+V KG RGS KS A + + IL R N+ S L+ + G + Sbjct: 17 YKVAKGGRGSGKSWAIA-RLLVEAARRQPVRILCARELQNSISDSVIRLLEDTIEREGYS 75 Query: 85 HLFKFNESLPEITYKPTGQKILFRGL-DDPLKITSITVDTGI-LCWAWFEEAYQIETFAK 142 F+ S+ I + T + +F G+ ++P KI S+ GI +C W EEA + T Sbjct: 76 AEFEIQRSM--IRHLGTNAEFMFYGIKNNPTKIKSL---EGIDIC--WVEEAEAV-TKES 127 Query: 143 FSTVVESIRGSYDSPDFFKQITVTFNP 169 + ++ +IR F +I V+FNP Sbjct: 128 WDILIPTIRKP------FSEIWVSFNP 148 >gi|17761|lcl|protein:vir:171 Length: 470 # NCBI annotation: terminase large subunit # Family: family:all:54 # MgeID: mge:5 # MgeName: HK620 # Cross-refs: genbank:acc:NP_112076;genbank:gi:13559866;genbank:GeneID :921009 Length = 470 Score = 43.9 bits (102), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 67/147 (45%), Gaps = 17/147 (11%) Query: 25 YRVVKGSRGSKKSKTTAINFIYRIMKYDWANILVVRRFSNTNKQSTYTDLKWATNQLGVA 84 Y+V KG RGS KS A + + IL R N+ S L+ + G + Sbjct: 17 YKVAKGGRGSGKSWAIA-RLLVEAARRQPVRILCARELQNSISDSVIRLLEDTIEREGYS 75 Query: 85 HLFKFNESLPEITYKPTGQKILFRGL-DDPLKITSITVDTGI-LCWAWFEEAYQIETFAK 142 F+ S+ I + T + +F G+ ++P KI S+ GI +C W EEA + T Sbjct: 76 AEFEIQRSM--IRHLGTNAEFMFYGIKNNPTKIKSL---EGIDIC--WVEEAEAV-TKES 127 Query: 143 FSTVVESIRGSYDSPDFFKQITVTFNP 169 + ++ +IR F +I V+FNP Sbjct: 128 WDILIPTIRKP------FSEIWVSFNP 148 >gi|6775|lcl|protein:vir:96067 Length: 460 # NCBI annotation: conserved hypothetical protein ORF004 # Family: family:all:54 # MgeID: mge:1597 # MgeName: F8 # Cross-refs: genbank:acc:YP_001294421;genbank:gi:149408318;genbank:Ge neID:5237186 Length = 460 Score = 43.5 bits (101), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 65/160 (40%), Gaps = 13/160 (8%) Query: 10 KIGGGYNKFWHNKSFYRVVKGSRGSKKSKTTAINFIYRIMKYDWANILVVRRFSNTNKQS 69 K+ W ++ Y+V+ G R S KS +Y Y L R+F N +S Sbjct: 3 KLNPALRAVWRTRARYKVIYGGRASSKSHDAGGIAVYLAANYRL-KFLCARQFQNRISES 61 Query: 70 TYTDLKWATNQLGVAHLFKFNESLPEITYKPTGQKILFRGLDDPLKITSITVDTGILCWA 129 YT +K F F ++ I +K TG + LF G+ L T IL Sbjct: 62 VYTLIKDKIENSEYNGEFIFTKN--SIKHKRTGSEFLFYGIARNLSEIKSTEGIDIL--- 116 Query: 130 WFEEAYQIETFAKFSTVVESIRGSYDSPDFFKQITVTFNP 169 W EEA+ + T ++ + +IR +I + FNP Sbjct: 117 WLEEAHYL-TQEQWEVIEPTIRKEN------SEIWIIFNP 149 >gi|1596|lcl|protein:vir:93748 Length: 403 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1475 # MgeName: 55 # Cross-refs: genbank:acc:YP_240453;genbank:gi:66396122;genbank:GeneID :5133517 Length = 403 Score = 40.0 bits (92), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 57/261 (21%), Positives = 116/261 (44%), Gaps = 35/261 (13%) Query: 162 QITVTFNPWSERHWLKSTFFDEE-TKLNNTFSDTTTYRV----NEWLDKVDIERYEDLYI 216 +I + NP + H +K + D+ +L+N + ++ N +LD+ E E + Sbjct: 147 RILIDTNPENPMHPVKKDYIDKSGQRLSNGRLNIKAFQFTLFDNTFLDE---EYIESIIA 203 Query: 217 KNPRRARIVCD--GDWGVAEGLVFDNFKVTDFDWREKFKRTQEIAH---GMDFGFTFDPT 271 P D G W AEG+V+ +FK +E+ +T++I G+D+G+ + Sbjct: 204 STPTGMFTDRDIYGKWVSAEGVVYKDFKEKVHYIKEEEFKTKQIKRKYAGVDWGYEHYGS 263 Query: 272 TLINTVVDLKNKELWIYDEHSEKAMLTDDII----NMIKRKGYQDAHIVADSAEKRLITE 327 ++ V + + ++ +EH+ + DD + +IKR G D D+A I Sbjct: 264 IMV--VAEDFDGNKYVIEEHAHRHKEIDDWVAIAKGVIKRHG--DILFYCDTARPEHIER 319 Query: 328 ISRKGVPNIKPSVKGANTIMQGVQFIQGF----KVYVHPSCVHTI-EELNTYTFDQDSEG 382 R+ + + ++ G++ I K+++ V EE+ Y + +++ Sbjct: 320 FRREKI----KARYADKAVIAGIEVISRLFKLNKIFIIKEKVSLFKEEIYNYVWKDNAD- 374 Query: 383 NWINKPIDKNNHLMDALRYSL 403 +P+ N+ +DALRY++ Sbjct: 375 ----EPVKLNDDTLDALRYAV 391 >gi|14951|lcl|protein:vir:1235 Length: 405 # NCBI annotation: similar to phage O1205 ORF26 ( putative large subunit terminase) # Family: family:all:54 # MgeID: mge:25 # MgeName: phi ETA # Cross-refs: genbank:acc:NP_510934;genbank:gi:17426268;genbank:GeneID :927381 Length = 405 Score = 40.0 bits (92), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 57/261 (21%), Positives = 116/261 (44%), Gaps = 35/261 (13%) Query: 162 QITVTFNPWSERHWLKSTFFDEE-TKLNNTFSDTTTYRV----NEWLDKVDIERYEDLYI 216 +I + NP + H +K + D+ +L+N + ++ N +LD+ E E + Sbjct: 149 RILIDTNPENPMHPVKKDYIDKSGQRLSNGRLNIKAFQFTLFDNTFLDE---EYIESIIA 205 Query: 217 KNPRRARIVCD--GDWGVAEGLVFDNFKVTDFDWREKFKRTQEIAH---GMDFGFTFDPT 271 P D G W AEG+V+ +FK +E+ +T++I G+D+G+ + Sbjct: 206 STPTGMFTDRDIYGKWVSAEGVVYKDFKEKVHYIKEEEFKTKQIKRKYAGVDWGYEHYGS 265 Query: 272 TLINTVVDLKNKELWIYDEHSEKAMLTDDII----NMIKRKGYQDAHIVADSAEKRLITE 327 ++ V + + ++ +EH+ + DD + +IKR G D D+A I Sbjct: 266 IMV--VAEDFDGNKYVIEEHAHRHKEIDDWVAIAKGVIKRHG--DILFYCDTARPEHIER 321 Query: 328 ISRKGVPNIKPSVKGANTIMQGVQFIQGF----KVYVHPSCVHTI-EELNTYTFDQDSEG 382 R+ + + ++ G++ I K+++ V EE+ Y + +++ Sbjct: 322 FRREKI----KARYADKAVIAGIEVISRLFKLNKIFIIKEKVSLFKEEIYNYVWKDNAD- 376 Query: 383 NWINKPIDKNNHLMDALRYSL 403 +P+ N+ +DALRY++ Sbjct: 377 ----EPVKLNDDTLDALRYAV 393 >gi|4261|lcl|protein:vir:94806 Length: 402 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1531 # MgeName: 29 # Cross-refs: genbank:acc:YP_240530;genbank:gi:66396200;genbank:GeneID :5133586 Length = 402 Score = 38.9 bits (89), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 59/262 (22%), Positives = 117/262 (44%), Gaps = 37/262 (14%) Query: 162 QITVTFNPWSERHWLKSTFFDEE-TKLNNTFSDTTTYRV----NEWLDKVDIERYEDLYI 216 +I + NP + H +K + D+ +L+N + ++ N +LD+ E E + Sbjct: 146 RILIDTNPENPMHPVKKDYIDKSGQRLSNGRLNIKAFQFTLFDNTFLDE---EYIESIIA 202 Query: 217 KNPRRARIVCD--GDWGVAEGLVFDNFKV-TDFDWREKFKRTQEIAH---GMDFGFTFDP 270 P D G W AEG+V+ +FK + E+FK T++I G+D+G+ Sbjct: 203 STPTGMFTDRDIYGKWVSAEGVVYKDFKEKVHYITEEEFK-TKQIKRKYAGVDWGYEHYG 261 Query: 271 TTLINTVVDLKNKELWIYDEHSEKAMLTDDII----NMIKRKGYQDAHIVADSAEKRLIT 326 + ++ V + + ++ +EH+ + DD + +IKR G D D+A I Sbjct: 262 SIMV--VAEDFDGNKYVIEEHAHRHKEIDDWVAIAKGVIKRHG--DILFYCDTARPEHIE 317 Query: 327 EISRKGVPNIKPSVKGANTIMQGVQFIQGF----KVYVHPSCVHTI-EELNTYTFDQDSE 381 R+ + + ++ G++ I K+++ V EE+ Y + +++ Sbjct: 318 RFRREKI----KARYADKAVIAGIEVISRLFKLNKIFIIKEKVSLFKEEIYNYVWKDNAD 373 Query: 382 GNWINKPIDKNNHLMDALRYSL 403 +P+ N+ +DALRY++ Sbjct: 374 -----EPVKLNDDTLDALRYAV 390 >gi|9935|lcl|protein:vir:97273 Length: 402 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1666 # MgeName: 52A # Cross-refs: genbank:acc:YP_240605;genbank:gi:66396276;genbank:GeneID :5133629 Length = 402 Score = 37.0 bits (84), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 59/262 (22%), Positives = 116/262 (44%), Gaps = 37/262 (14%) Query: 162 QITVTFNPWSERHWLKSTFFDEE-TKLNNTFSDTTTYRV----NEWLDKVDIERYEDLYI 216 +I + NP + H +K + D+ +L+N + ++ N +LD+ E E + Sbjct: 146 RILIDTNPENPMHPVKKDYIDKSGQRLSNGRLNIKAFQFTLFDNTFLDE---EYIESIIA 202 Query: 217 KNPRRARIVCD--GDWGVAEGLVFDNFKV-TDFDWREKFKRTQEIAH---GMDFGFTFDP 270 P D G W AEG+V+ +FK + E+FK T++I G+D+G+ Sbjct: 203 STPTGMFTDRDIYGKWVSAEGVVYKDFKEKVHYITEEEFK-TKQIKRKYAGVDWGYEHYG 261 Query: 271 TTLINTVVDLKNKELWIYDEHSEKAMLTDDII----NMIKRKGYQDAHIVADSAEKRLIT 326 + ++ V + + ++ +EH+ + DD + +IKR G D D+A I Sbjct: 262 SIMV--VAEDFDGNKYVIEEHAHRHKEIDDWVAIAKGVIKRHG--DILFYCDTARPEHIE 317 Query: 327 EISRKGVPNIKPSVKGANTIMQGVQFIQGF----KVYVHPSCVHTI-EELNTYTFDQDSE 381 R+ + + ++ G++ I K+ + V EE+ Y + +++ Sbjct: 318 RFRREKI----KARYADKAVIAGIEVISRLFKLNKISIIKEKVSLFKEEIYNYVWKDNAD 373 Query: 382 GNWINKPIDKNNHLMDALRYSL 403 +P+ N+ +DALRY++ Sbjct: 374 -----EPVKLNDDTLDALRYAV 390 >gi|2931|lcl|protein:vir:105460 Length: 409 # NCBI annotation: putative phage terminase large subunit B # Family: family:all:54 # MgeID: mge:1502 # MgeName: KC5a # Cross-refs: genbank:acc:YP_529870;genbank:gi:90592610;genbank:GeneID :3974524 Length = 409 Score = 36.6 bits (83), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 57/292 (19%), Positives = 123/292 (42%), Gaps = 29/292 (9%) Query: 124 GILCWAWFEEAYQIETFAKFSTVVE--SIRGSYDSPDFFKQITVTFNPWSERHWLKSTFF 181 G+ + + + T F +++ SI G+ +I NP HWLK+ + Sbjct: 122 GMTSYGAYVNEASLATHDVFQEILQRCSIEGA--------RIICDTNPDIPTHWLKTDYI 173 Query: 182 DEETKLNNTFSDTTTYRVNEWLDKVDIERYEDLYIKNPRRARIVCDGDWGVAEGLVFDNF 241 D S T T N +L K +E + + R + G W +G+V+ +F Sbjct: 174 DNHDPKARIKSFTFTIDDNTFLSKDYVESIKAATPRGMFYDRGIL-GQWVTGDGIVYQDF 232 Query: 242 -KVTDFDWREKFKRTQEIAHGMDFGFTF-DPTTLINTVVDLKNKELWIYDEHSEKAMLTD 299 K T + + + G+D+G+ +P L+ D K+ ++ +++++K + Sbjct: 233 NKDTMVIPKNRVPDGLDYYVGVDWGYEHPNPIILLG---DDKDGNTYVLEDYTQKHKFIN 289 Query: 300 ---DIINMIKRKGYQDAHIVADSAEKRLITEISRKGVPNIKPSVKGANTIMQGVQFI--- 353 + ++ + ++ ADSA + E G+ I + ++ G++ + Sbjct: 290 YWVKVAQNLQTRFGRNLIFYADSARPDNVNEFQSNGLNCINAN----KNVLPGIECVARK 345 Query: 354 --QGFKVYVHPSCVHTIEELNTYTFDQDSEGNWINKPIDKNNHLMDALRYSL 403 +G V + ++E+ Y +D+ S G + + ++N +DA+RY++ Sbjct: 346 MREGKFYVVDTASSGLLDEIYQYAWDE-STGLPLKENDVRHNDRLDAIRYAI 396 >gi|18891|lcl|protein:vir:8847 Length: 482 # NCBI annotation: terminase # Family: family:all:1730 # MgeID: mge:158 # MgeName: PaP3 # Cross-refs: genbank:acc:NP_775255;genbank:gi:27476053;genbank:GeneID :2700601 Length = 482 Score = 36.2 bits (82), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 51/217 (23%), Positives = 88/217 (40%), Gaps = 39/217 (17%) Query: 214 LYIKNPRRARIVCDGDWGVAEGLVF----DNFKVTDFDWREKFKRTQEIAHGMDFGFTFD 269 L + +P R+ +G + G+VF + F FD + F R G+D GF Sbjct: 244 LSVYSPAERRMRAEGIPMLGSGVVFPILEEKFVCEPFDIPDHFHRII----GIDLGFDH- 298 Query: 270 PTTLINTVVDLKNKELWIYDEHSEKAMLTDDIINMIKRKG-YQDAHIVADSAEKRLITEI 328 P + D + + ++YDE SE + I KG +Q +V A K Sbjct: 299 PNAIACVAWDAEKDKYYLYDERSESGETLGMHADAIYLKGGHQIPVVVPHDAFKHDGATS 358 Query: 329 SRKGVPNIK-----------------PSVK-GANTIMQGVQFI----QGFKVYVHPSCVH 366 R+ V +K P K G N++ GV ++ + + V +C + Sbjct: 359 GRRFVDLLKDDHNLNVVYEPFSNPPGPDGKHGGNSVEFGVNWMLTRMENGDLKVFNTCTN 418 Query: 367 TIEELNTYTFDQDSEGNWINKPIDKNNHLMDALRYSL 403 ++E+ Y +G K +D+N+ ++ A RY+L Sbjct: 419 FLKEMKMY---HRKDG----KIVDRNDDMISATRYAL 448 >gi|16025|lcl|protein:vir:9814 Length: 403 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:176 # MgeName: 315.4 # Cross-refs: genbank:acc:NP_795576;genbank:gi:28876345;genbank:GeneID :1257867 Length = 403 Score = 35.0 bits (79), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/108 (29%), Positives = 46/108 (42%), Gaps = 28/108 (25%) Query: 315 IVADSAEKRLITEISRKGV-----PNIKPSV------------KGANTIMQGVQFI--QG 355 + D A K L E+ + GV PN V +G N I G ++ Sbjct: 296 VFVDPACKSLREELHKLGVFTLGAPNNSKDVSSKAKGIEVGIERGQNIISDGAFYLVNHS 355 Query: 356 FKVYVHPSCVHTIEELNTYTFDQDSEGNWINKPIDKNNHLMDALRYSL 403 + Y H H ++E+ Y+ D + KPIDK+NH MD RYS+ Sbjct: 356 EEEYDH---YHFLKEIGLYSRDDNG------KPIDKDNHAMDEFRYSV 394 >gi|16299|lcl|protein:vir:3027 Length: 375 # NCBI annotation: terminase large subunit # Family: family:all:54 # MgeID: mge:61 # MgeName: PhiNIH1.1 # Cross-refs: genbank:acc:NP_438140;genbank:gi:16271803;genbank:GeneID :929285 Length = 375 Score = 35.0 bits (79), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/108 (29%), Positives = 46/108 (42%), Gaps = 28/108 (25%) Query: 315 IVADSAEKRLITEISRKGV-----PNIKPSV------------KGANTIMQGVQFI--QG 355 + D A K L E+ + GV PN V +G N I G ++ Sbjct: 268 VFVDPACKSLREELHKLGVFTLGAPNNSKDVSSKAKGIEVGIERGQNIISDGAFYLVNHS 327 Query: 356 FKVYVHPSCVHTIEELNTYTFDQDSEGNWINKPIDKNNHLMDALRYSL 403 + Y H H ++E+ Y+ D + KPIDK+NH MD RYS+ Sbjct: 328 EEEYDH---YHFLKEIGLYSRDDNG------KPIDKDNHAMDEFRYSV 366 >gi|11622|lcl|protein:vir:78869 Length: 439 # NCBI annotation: TerL # Family: family:all:54 # MgeID: mge:1859 # MgeName: A006 # Cross-refs: genbank:acc:YP_001468842;genbank:gi:157325434;genbank:Ge neID:5601865 Length = 439 Score = 34.3 bits (77), Expect = 0.003, Method: Compositional matrix adjust. Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 5/35 (14%) Query: 368 IEELNTYTFDQDSEGNWINKPIDKNNHLMDALRYS 402 ++E+ Y D++S KP+DKNNH MD RY+ Sbjct: 399 LQEIGMYVRDENS-----GKPVDKNNHAMDTSRYA 428 >gi|15201|lcl|protein:vir:7028 Length: 631 # NCBI annotation: large terminase subunit # Family: family:all:697 # MgeID: mge:141 # MgeName: SP6 # Cross-refs: genbank:acc:NP_853601;genbank:gi:31711683;genbank:GeneID :1481809 Length = 631 Score = 32.0 bits (71), Expect = 0.015, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 3/61 (4%) Query: 9 NKIGGGYNKFWHNKSFYRVVKGSRGSKKSKTTAINFIYRIMKYDWANILVVRRFSNTNKQ 68 N++ KF + YR+V+ RG K+ AI ++RI+ I++V S T K+ Sbjct: 51 NRVQADILKFLFGGNKYRMVEAQRGQAKTTIAAIYAVFRIIHEPHKRIMIV---SQTAKR 107 Query: 69 S 69 + Sbjct: 108 A 108 >gi|10294|lcl|protein:vir:105656 Length: 405 # NCBI annotation: putative large terminase subunit # Family: family:all:697 # MgeID: mge:1674 # MgeName: K1E # Cross-refs: genbank:acc:YP_425018;genbank:gi:83571766;uniprot:Q2WC34 ;genbank:GeneID:3837297 Length = 405 Score = 28.1 bits (61), Expect = 0.21, Method: Compositional matrix adjust. Identities = 14/43 (32%), Positives = 23/43 (53%) Query: 17 KFWHNKSFYRVVKGSRGSKKSKTTAINFIYRIMKYDWANILVV 59 KF YR+++ RG K+ +AI ++RI+ I+VV Sbjct: 59 KFLFYGHKYRLIEAPRGIAKTTLSAIYTVFRIIHEPHKRIMVV 101 >gi|8927|lcl|protein:vir:97005 Length: 632 # NCBI annotation: 40 # Family: family:all:697 # MgeID: mge:1644 # MgeName: K1-5 # Cross-refs: genbank:acc:YP_654141;genbank:gi:108862025;genbank:GeneI D:5075954 Length = 632 Score = 28.1 bits (61), Expect = 0.22, Method: Compositional matrix adjust. Identities = 14/43 (32%), Positives = 23/43 (53%) Query: 17 KFWHNKSFYRVVKGSRGSKKSKTTAINFIYRIMKYDWANILVV 59 KF YR+++ RG K+ +AI ++RI+ I+VV Sbjct: 59 KFLFYGHKYRLIEAPRGIAKTTLSAIYTVFRIIHEPHKRIMVV 101 >gi|7495|lcl|protein:vir:103312 Length: 624 # NCBI annotation: TerL large terminase subunit-like protein # Family: family:all:697 # MgeID: mge:1609 # MgeName: Era103 # Cross-refs: genbank:acc:YP_001039677;genbank:gi:126000006;genbank:Ge neID:4818388 Length = 624 Score = 26.9 bits (58), Expect = 0.48, Method: Compositional matrix adjust. Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 9/121 (7%) Query: 9 NKIGGGYNKFWHNKSFYRVVKGSRGSKKSKTTAINFIYRIMKYDWANILVVRRFSNTNKQ 68 N+I +F YR+V+ RG K+ AI ++ I+ IL+ S T+K+ Sbjct: 51 NRIQADILRFMFTGKKYRMVEAQRGQAKTTIAAIYAVFCIIHRPHFRILIS---SQTSKR 107 Query: 69 STYTDLKWATNQLGVAHLFKFNESLPEITYKPTGQKILFRGLDDPLKITSITVDTGILCW 128 + W + +F +P+I +G K RG + + + C+ Sbjct: 108 AEEI-AGWVIKIFRGLDILEF--MMPDIY---SGDKASIRGFEIHYTLRGSGASPSVACY 161 Query: 129 A 129 + Sbjct: 162 S 162 >gi|5072|lcl|protein:vir:95130 Length: 531 # NCBI annotation: hypothetical protein ORF006 # Family: family:all:144 # MgeID: mge:1552 # MgeName: PA73 # Cross-refs: genbank:acc:YP_001293413;genbank:gi:148912834;genbank:Ge neID:5228205 Length = 531 Score = 26.2 bits (56), Expect = 0.90, Method: Compositional matrix adjust. Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 11/75 (14%) Query: 167 FNPWSERHWLKSTFFDEETKLNNTFSDTTTYRVNEWLDKVDIERYEDLYIKNPRRARIVC 226 +NP +E+ EET + + + +Y+ N +L I E + N R+A + Sbjct: 232 YNPATEK---------EETHVISQIAIFGSYKENPYLPASYIAELESIKEPNLRKAWLY- 281 Query: 227 DGDWGVAEGLVFDNF 241 GDW V G D+ Sbjct: 282 -GDWDVTAGGAIDDL 295 >gi|12899|lcl|protein:vir:80432 Length: 510 # NCBI annotation: BcepGomrgp04 # Family: family:all:144 # MgeID: mge:1882 # MgeName: BcepGomr # Cross-refs: genbank:acc:YP_001210224;genbank:gi:146329916;genbank:Ge neID:5123541 Length = 510 Score = 25.0 bits (53), Expect = 1.7, Method: Compositional matrix adjust. Identities = 27/117 (23%), Positives = 43/117 (36%), Gaps = 30/117 (25%) Query: 157 PDFFKQITVTFNPWSERH-WLKSTF----------------FDEETKLNNTFSDTT---- 195 P+ + T NP+ H W+K F F+ T+ + T Sbjct: 175 PEMPLMVFSTTNPYGPGHNWVKRQFIDIAPPGVVVKTTKDVFNPRTQKREPVTKTQVRLF 234 Query: 196 -TYRVNEWLDKVDIERYEDLYIKNPRRARIVCDGDWGVAEGLVFDNFKVTDFDWREK 251 +Y+ N +L + E IK+P + + GDW V G D+ WRE+ Sbjct: 235 GSYKENIYLTPEYVAELES--IKDPNKRKAWLHGDWNVVAGGAIDDL------WREE 283 >gi|3763|lcl|protein:vir:107694 Length: 527 # NCBI annotation: putative terminase large subunit # Family: family:all:144 # MgeID: mge:1518 # MgeName: T1 # Cross-refs: genbank:acc:YP_003892;genbank:gi:45686309;genbank:GeneID :2773034 Length = 527 Score = 23.9 bits (50), Expect = 3.7, Method: Compositional matrix adjust. Identities = 8/22 (36%), Positives = 14/22 (63%) Query: 147 VESIRGSYDSPDFFKQITVTFN 168 ++ IRG +++PD +Q T N Sbjct: 382 IDGIRGKWEAPDMERQFTAFVN 403 >gi|8126|lcl|protein:vir:102661 Length: 568 # NCBI annotation: terminase # Family: family:all:147 # MgeID: mge:1624 # MgeName: VP2 # Cross-refs: genbank:acc:YP_024418;genbank:gi:48696639;genbank:GeneID :2948128 Length = 568 Score = 23.9 bits (50), Expect = 4.0, Method: Compositional matrix adjust. Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 13/92 (14%) Query: 349 GVQFIQGFKVYV---HPSCVHTIEELNTY---------TFDQDSEGNWINKPIDKNNHLM 396 G+ +GF +C + IE L ++ T+ ++ +W + P D +L Sbjct: 476 GIDATRGFLATCCIDETNCEYLIEALKSFRREYDEKNQTYRNNAVHDWASHPADNVRYLA 535 Query: 397 DALRYSLEKYHIKLKKRKKN-AESKTKVIKSL 427 + L H+ K+ + N ++ KV ++L Sbjct: 536 SSWDSVLSYVHVAAKRSRGNKMKANIKVKRAL 567 >gi|8001|lcl|protein:vir:100241 Length: 154 # NCBI annotation: gp70 # Family: family:all:628 # MgeID: mge:1619 # MgeName: Bcep176 # Cross-refs: genbank:acc:YP_355406;genbank:gi:77864696;genbank:GeneID :3725963 Length = 154 Score = 23.9 bits (50), Expect = 4.2, Method: Compositional matrix adjust. Identities = 11/35 (31%), Positives = 18/35 (51%) Query: 149 SIRGSYDSPDFFKQITVTFNPWSERHWLKSTFFDE 183 S+ G+Y S D + + T E+H + TF D+ Sbjct: 75 SVDGNYSSDDEGQSLLRTARASGEKHVFRVTFADQ 109 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.319 0.136 0.415 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 215,042 Number of Sequences: 514 Number of extensions: 11090 Number of successful extensions: 193 Number of sequences better than 100.0: 61 Number of HSP's better than 100.0 without gapping: 54 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 30 Number of HSP's gapped (non-prelim): 67 length of query: 429 length of database: 206,069 effective HSP length: 74 effective length of query: 355 effective length of database: 168,033 effective search space: 59651715 effective search space used: 59651715 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 38 (19.2 bits)