Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : S1 | Genbank acc : NC_011589

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 6) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 48

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	8	lcl\|NC_011589.1_cdsid_YP_002321458.1	HHsearch (proba=100.00%)
Portal	7	lcl\|NC_011589.1_cdsid_YP_002321457.1	HHsearch (proba=100.00%)
TermL	4	lcl\|NC_011589.1_cdsid_YP_002321454.1	Blast (e-value=1e-48)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	6	lcl\|NC_011589.1_cdsid_YP_002321456.1	HHsearch (proba=97.19%)
Hc1	NOT FOUND
Ne1	17	lcl\|NC_011589.1_cdsid_YP_002321467.1	HHsearch (proba=99.61%)
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Ne1<->Ad1	11	3

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:79548 protein:vir:79246 protein:vir:99228	cdtI Phage MP22 DMS3	26 % 22 % 22 %
Portal	protein:vir:10321 protein:vir:96738 protein:vir:79538	VHML VP882 cdtI	26 % 25 % 22 %
TermL	protein:vir:10320 protein:vir:3418 protein:vir:387	VHML lambda N15	28 % 24 % 24 %
Ad1	protein:vir:388 protein:vir:3419 protein:vir:79544	N15 lambda cdtI	21 % 20 % 26 %
Ne1	protein:vir:96763 protein:vir:6375 protein:vir:396	VP882 BcepNazgul N15	20 % 18 % 16 %