Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : 1717 | Genbank acc : NC_011357

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 3) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 77

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	55	lcl\|NC_011357.1_cdsid_YP_002274266.1	HHsearch (proba=100.00%)
Portal	56	lcl\|NC_011357.1_cdsid_YP_002274267.1	HHsearch (proba=100.00%)
TermL	NOT FOUND
MTP	61	lcl\|NC_011357.1_cdsid_YP_002274272.1	Blast (e-value=1e-170)
Sheath	NOT FOUND
Ad1	58	lcl\|NC_011357.1_cdsid_YP_002274269.1	HHsearch (proba=100.00%)
Hc1	59	lcl\|NC_011357.1_cdsid_YP_002274270.1	HHsearch (proba=100.00%)
Ne1	60	lcl\|NC_011357.1_cdsid_YP_002274271.1	HHsearch (proba=100.00%)
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:93616 protein:vir:80376 protein:vir:1433	phi 4795 phi644-2 phiE125	98 % 23 % 23 %
Portal	protein:vir:93610 protein:vir:100150 protein:vir:80333	phi 4795 phi1026b phi644-2	96 % 26 % 24 %
MTP	protein:vir:93600 protein:vir:196 protein:vir:80349	phi 4795 HK97 phi644-2	100 % 67 % 32 %
Ad1	protein:vir:93592 protein:vir:100103 protein:vir:4512	phi 4795 phi1026b V	100 % 24 % 24 %
Hc1	protein:vir:93599 protein:vir:193 protein:vir:1890	phi 4795 HK97 HK022	100 % 45 % 25 %
Ne1	protein:vir:93617 protein:vir:194 protein:vir:100243	phi 4795 HK97 Bcep176	99 % 76 % 43 %