Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 13 lcl|NC_011056.1_cdsid_YP_002014481.1 HHsearch (proba=100.00%)
Portal 11 lcl|NC_011056.1_cdsid_YP_002014479.1 HHsearch (proba=100.00%)
TermL 9 lcl|NC_011056.1_cdsid_YP_002014477.1 Blast (e-value=0)
MTP 19 lcl|NC_011056.1_cdsid_YP_002014487.1 Blast (e-value=1e-176)
Sheath NOT FOUND
Ad1 15 lcl|NC_011056.1_cdsid_YP_002014483.1 HHsearch (proba=100.00%)
Hc1 16 lcl|NC_011056.1_cdsid_YP_002014484.1 HHsearch (proba=100.00%)
Ne1 17 lcl|NC_011056.1_cdsid_YP_002014485.1 HHsearch (proba=100.00%)
Tc1 18 lcl|NC_011056.1_cdsid_YP_002014486.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:101650
protein:vir:7855
protein:vir:81227
244
CJW1
BFK20
100 %
100 %
30 %
Portal protein:vir:101648
protein:vir:7853
protein:vir:483
244
CJW1
P27
100 %
99 %
23 %
TermL protein:vir:7851
protein:vir:101786
protein:vir:4335
CJW1
244
D3
99 %
97 %
26 %
MTP protein:vir:101656
protein:vir:7861
protein:vir:8436
244
CJW1
Omega
97 %
97 %
35 %
Ad1 protein:vir:101652
protein:vir:7857
protein:vir:8104
244
CJW1
Che9c
99 %
99 %
24 %
Hc1 protein:vir:101653
protein:vir:7858
protein:vir:8431
244
CJW1
Omega
93 %
93 %
36 %
Ne1 protein:vir:101654
protein:vir:7859
protein:vir:7993
244
CJW1
Che8
98 %
98 %
29 %
Tc1 protein:vir:101655
protein:vir:7860
protein:vir:102609
244
CJW1
Llij
100 %
100 %
28 %