BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|NC_011056.1_cdsid_YP_002014487.1 [gene=Kostya_19] [protein=gp19] [protein_id=YP_002014487.1] [location=11378..12349] (323 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|3569|lcl|protein:vir:101656 Length: 324 # NCBI annotation: gp... 609 e-176 gi|19394|lcl|protein:vir:7861 Length: 324 # NCBI annotation: gp1... 609 e-176 gi|27826|lcl|protein:vir:8436 Length: 334 # NCBI annotation: gp3... 141 1e-35 gi|14224|lcl|protein:vir:8332 Length: 271 # NCBI annotation: gp4... 60 4e-11 gi|14600|lcl|protein:vir:8108 Length: 265 # NCBI annotation: gp1... 50 3e-08 gi|18282|lcl|protein:vir:7995 Length: 269 # NCBI annotation: gp1... 44 2e-06 gi|8449|lcl|protein:vir:105827 Length: 269 # NCBI annotation: gp... 44 3e-06 gi|9704|lcl|protein:vir:102610 Length: 269 # NCBI annotation: gp... 44 3e-06 gi|12981|lcl|protein:vir:80670 Length: 213 # NCBI annotation: gp... 37 3e-04 gi|10070|lcl|protein:vir:99006 Length: 303 # NCBI annotation: gp... 31 0.018 gi|18502|lcl|protein:vir:1644 Length: 185 # NCBI annotation: Str... 27 0.28 gi|4248|lcl|protein:vir:94739 Length: 185 # NCBI annotation: maj... 27 0.31 gi|13490|lcl|protein:vir:9765 Length: 196 # NCBI annotation: put... 26 0.81 gi|19650|lcl|protein:vir:10361 Length: 561 # NCBI annotation: te... 25 0.98 gi|23580|lcl|protein:vir:102747 Length: 622 # NCBI annotation: t... 25 1.1 gi|12378|lcl|protein:vir:79648 Length: 523 # NCBI annotation: Te... 25 1.5 gi|19539|lcl|protein:vir:10320 Length: 627 # NCBI annotation: OR... 22 8.1 gi|7515|lcl|protein:vir:99926 Length: 204 # NCBI annotation: gp1... 22 8.5 >gi|3569|lcl|protein:vir:101656 Length: 324 # NCBI annotation: gp19 # Family: family:all:1912 # MgeID: mge:1515 # MgeName: 244 # Cross-refs: genbank:acc:YP_654774;genbank:gi:109302772;genbank:GeneI D:4156090 Length = 324 Score = 609 bits (1570), Expect = e-176, Method: Compositional matrix adjust. Identities = 312/323 (96%), Positives = 317/323 (98%) Query: 1 MSELWTGLYQGNADRIRKWLYGSVLIRDWKPDGSTSLADFTPFDPTDGNLKDTLLSEDFP 60 MSELWTGLYQGNADRIRKWLYGSVLIRDWKPDGSTSLADFTPFDPTDGNLKDTLLSEDFP Sbjct: 1 MSELWTGLYQGNADRIRKWLYGSVLIRDWKPDGSTSLADFTPFDPTDGNLKDTLLSEDFP 60 Query: 61 GGRFYEIGAITEDGVEFNPKFSTDDTKIWQSRRAQRTDVTEDDEEVMFTAAENTPLIDYL 120 GGRFYEIGAITEDGVEFNPKFSTDDTKIWQSRRAQRTDVTEDDEEVMFTAAENTPLIDYL Sbjct: 61 GGRFYEIGAITEDGVEFNPKFSTDDTKIWQSRRAQRTDVTEDDEEVMFTAAENTPLIDYL 120 Query: 121 RYNLPLENVPSVGTAGYKATKPNYTDMVYRQIVVIGVDGRMDEAEYVAEVRPRVSLTKVG 180 RYNLPLENVPSVGTAGYKATKPNYTDMVYRQIVVIGVDGRMDEAEYVAEVRPRVSLTKVG Sbjct: 121 RYNLPLENVPSVGTAGYKATKPNYTDMVYRQIVVIGVDGRMDEAEYVAEVRPRVSLTKVG 180 Query: 181 KQSFKAKEIDGTELTFGVYPDPASGFPARRIPGGPFWAESGGPVLWPTPEVAPVATLVDD 240 KQSFKAKEIDGTELTFGVYPDPASGFPARRIPGGPFWAESGGPVLWPTPEVAPVATL D Sbjct: 181 KQSFKAKEIDGTELTFGVYPDPASGFPARRIPGGPFWAESGGPVLWPTPEVAPVATLGTD 240 Query: 241 EVTIVLQEPVSPNTPFTYTVSQTTGGSTTAATLVGEPVTDEDGEVTITVAAPVTPGSYTF 300 EVTIVLQEPVSPNTPFTYTVSQT+GG+TTAATLVGEPVTDEDGEVTITV AP T GSYTF Sbjct: 241 EVTIVLQEPVSPNTPFTYTVSQTSGGTTTAATLVGEPVTDEDGEVTITVEAPATSGSYTF 300 Query: 301 RVTAEGSNGETAQSVASNSVTVS 323 +VTAEGSNGETA+S ASNSVTV+ Sbjct: 301 KVTAEGSNGETAESQASNSVTVN 323 >gi|19394|lcl|protein:vir:7861 Length: 324 # NCBI annotation: gp18 # Family: family:all:1912 # MgeID: mge:150 # MgeName: CJW1 # Cross-refs: genbank:acc:NP_817468;genbank:gi:29565897;genbank:GeneID :1259090 Length = 324 Score = 609 bits (1570), Expect = e-176, Method: Compositional matrix adjust. Identities = 312/323 (96%), Positives = 317/323 (98%) Query: 1 MSELWTGLYQGNADRIRKWLYGSVLIRDWKPDGSTSLADFTPFDPTDGNLKDTLLSEDFP 60 MSELWTGLYQGNADRIRKWLYGSVLIRDWKPDGSTSLADFTPFDPTDGNLKDTLLSEDFP Sbjct: 1 MSELWTGLYQGNADRIRKWLYGSVLIRDWKPDGSTSLADFTPFDPTDGNLKDTLLSEDFP 60 Query: 61 GGRFYEIGAITEDGVEFNPKFSTDDTKIWQSRRAQRTDVTEDDEEVMFTAAENTPLIDYL 120 GGRFYEIGAITEDGVEFNPKFSTDDTKIWQSRRAQRTDVTEDDEEVMFTAAENTPLIDYL Sbjct: 61 GGRFYEIGAITEDGVEFNPKFSTDDTKIWQSRRAQRTDVTEDDEEVMFTAAENTPLIDYL 120 Query: 121 RYNLPLENVPSVGTAGYKATKPNYTDMVYRQIVVIGVDGRMDEAEYVAEVRPRVSLTKVG 180 RYNLPLENVPSVGTAGYKATKPNYTDMVYRQIVVIGVDGRMDEAEYVAEVRPRVSLTKVG Sbjct: 121 RYNLPLENVPSVGTAGYKATKPNYTDMVYRQIVVIGVDGRMDEAEYVAEVRPRVSLTKVG 180 Query: 181 KQSFKAKEIDGTELTFGVYPDPASGFPARRIPGGPFWAESGGPVLWPTPEVAPVATLVDD 240 KQSFKAKEIDGTELTFGVYPDPASGFPARRIPGGPFWAESGGPVLWPTPEVAPVATL D Sbjct: 181 KQSFKAKEIDGTELTFGVYPDPASGFPARRIPGGPFWAESGGPVLWPTPEVAPVATLGTD 240 Query: 241 EVTIVLQEPVSPNTPFTYTVSQTTGGSTTAATLVGEPVTDEDGEVTITVAAPVTPGSYTF 300 EVTIVLQEPVSPNTPFTYTVSQT+GG+TTAATLVGEPVTDEDGEVTITV AP T GSYTF Sbjct: 241 EVTIVLQEPVSPNTPFTYTVSQTSGGTTTAATLVGEPVTDEDGEVTITVEAPATSGSYTF 300 Query: 301 RVTAEGSNGETAQSVASNSVTVS 323 +VTAEGSNGETA+S ASNSVTV+ Sbjct: 301 KVTAEGSNGETAESQASNSVTVN 323 >gi|27826|lcl|protein:vir:8436 Length: 334 # NCBI annotation: gp31 # Family: family:all:1912 # MgeID: mge:155 # MgeName: Omega # Cross-refs: genbank:acc:NP_818332;genbank:gi:29566768;genbank:GeneID :1260104 Length = 334 Score = 141 bits (356), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 110/320 (34%), Positives = 155/320 (48%), Gaps = 24/320 (7%) Query: 16 IRKWLYGSVLIRDWKP-DGST-SLAD----------FTPFDPTDGNLKDTLLSEDFPGGR 63 +RK + +LIRD++ DG+ +LAD F+PF DG L+ LL ++ G Sbjct: 23 VRKAIITDILIRDYRNLDGTVHNLADPAVGLGNDGFFSPF-AEDGKLRSDLLGDNGLG-- 79 Query: 64 FYEIGAITEDGVEFNPKFSTDDTKIWQSRRAQRTDVTEDDEEVMFTAAENTPLIDYLRYN 123 FY +GA+ EDG E DT I QS+RA R DVT+D++ + A E TPL+D LRY+ Sbjct: 80 FYHLGALHEDGTEMTYDTDVADTMIAQSKRAVRFDVTQDNDGITIKALEGTPLVDALRYD 139 Query: 124 LPLENVPSVGTAGYKATKPNYTDMVYRQIVVIGVDGRMDEAEYVAEVRPRVSLTKVGKQS 183 PL ++ VG A Y K T +V RQ++ IG DG Y A+ PR+SL G S Sbjct: 140 KPLHSLADVGQAHYTIAKDAETKLVERQVIAIGFDGD----NYFAQTFPRMSLRNRGNSS 195 Query: 184 FKAKEIDGTELTFGVYPDPASGFPARRIPGGPFW-AESGGPVLWPTPEVAPVATLVDDEV 242 + + D E+ G P G PA G W G P+ P VA + D Sbjct: 196 WNKADADVMEIELGALLCPFVGKPALWHREGADWRGLQGYPLFATAPTAVAVAGEMAD-- 253 Query: 243 TIVLQEPVSPNTPFTYTVSQTTGGSTTAATLVGEPVTDEDGEVTITVAAPVTPGSYTFRV 302 + +P S +T + Y V ++ T V E V+ VTI V+ + S+ FRV Sbjct: 254 -VTFDKPTSKSTSYEYEVEKSNDDGATWTDAVIEDVSGT-ATVTIRVSGVTSSASWKFRV 311 Query: 303 TAEGSNGETAQSVASNSVTV 322 A G+N T S + S + Sbjct: 312 KATGTNALTTTSAPTASAVI 331 >gi|14224|lcl|protein:vir:8332 Length: 271 # NCBI annotation: gp49 # Family: family:all:1912 # MgeID: mge:154 # MgeName: Corndog # Cross-refs: genbank:acc:NP_817900;genbank:gi:29566333;genbank:GeneID :1259528 Length = 271 Score = 59.7 bits (143), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 60/207 (28%), Positives = 88/207 (42%), Gaps = 28/207 (13%) Query: 23 SVLIRDWK-PD--------GSTSLADFTPFDPTDGNLKDTLLSEDF----------PGGR 63 ++LIRD + PD G+ +++PF DGN +D L + P Sbjct: 30 AILIRDNRGPDTNISPWASGNPPTRNWSPF-AEDGNPRDDLFAHILVDGDWVTNPEPNEG 88 Query: 64 FYEIGAITEDG-VEFNPKFSTDDTKIWQSRRAQRTDVTEDDEEVMFTAAENT-PLIDYLR 121 F+ IGA+TEDG E P S D+ I QS +D+T + + FT E PL+ LR Sbjct: 89 FHLIGALTEDGGPERAPDISNDNQMILQSNMPFDSDLTSESLSINFTGVETVKPLMKRLR 148 Query: 122 YNLPLEN------VPSVGTAGYKATKPNYTDMVYRQIVVIGVDGRMDEAEYVAEVRPRVS 175 NL L + V GT + KP + QI+++ + + Y AE Sbjct: 149 MNLALSDSDGNSIVEDPGTENFGIGKPVDNEGPEYQIILMFARRKRGKFLYTAEGYSLCK 208 Query: 176 LTKVGKQSFKAKEIDGTELTFGVYPDP 202 L +G + D L + V PDP Sbjct: 209 LNDIGAFRRSKTDPDAGSLGYMVLPDP 235 >gi|14600|lcl|protein:vir:8108 Length: 265 # NCBI annotation: gp12 # Family: family:all:1912 # MgeID: mge:152 # MgeName: Che9c # Cross-refs: genbank:acc:NP_817689;genbank:gi:29566120;genbank:GeneID :1259314 Length = 265 Score = 50.4 bits (119), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 59/201 (29%), Positives = 80/201 (39%), Gaps = 35/201 (17%) Query: 47 DGNLKDTLLSEDF----------PGGRFYEIGAITE-DGVEFNPKFSTDDTKIWQSRRAQ 95 DG L+D L + P +Y GA E +G P TDD I QS Sbjct: 62 DGQLRDDLFAHKLESGVWVENTNPNEGWYLAGAFGEGNGPSSRPSIDTDDQMIEQSNWPF 121 Query: 96 RTDVTEDDEEVMFTAAENT-PLIDYLRYNLPLENV---PSVGTAGYK--ATKPNYTDMVY 149 +D+T+ DE F A +N P I L NLPL + P V G ++P + + Sbjct: 122 ESDITKQDEPFTFQALQNLYPAIQRLANNLPLSDANGNPLVELPGEADGFSQPVDAEKIG 181 Query: 150 RQIVVIGVDGRMDEAEYVAEVRPR--VSLTKVGKQSFKAKEIDGTELTFGVYPDPASGFP 207 RQ ++ G+ R E Y+ EV L G++ K ELTF P+P+ F Sbjct: 182 RQFLLYGI--RKKEGRYLYEVDAYDLAYLNNKGERKL-GKRGTAAELTF--KPEPSGYFM 236 Query: 208 A-----------RRIPGGPFW 217 A GGP W Sbjct: 237 AMVDGEYKPIIKHTFIGGPAW 257 >gi|18282|lcl|protein:vir:7995 Length: 269 # NCBI annotation: gp11 # Family: family:all:1912 # MgeID: mge:151 # MgeName: Che8 # Cross-refs: genbank:acc:NP_817349;genbank:gi:29565777;genbank:GeneID :1259036 Length = 269 Score = 44.3 bits (103), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 59/213 (27%), Positives = 81/213 (38%), Gaps = 35/213 (16%) Query: 40 FTPFDPTDGNLKDTLLSEDFPGGRF----------YEIGAITEDG-VEFNPKFSTDDTKI 88 ++PF DG L+D L G++ + IG EDG E P ++DD + Sbjct: 55 WSPF-AQDGKLRDDLFIRRKVNGKYEYNTAPNEGWWHIGCNPEDGGAEREPDVTSDDLMV 113 Query: 89 WQSRRAQRTDVTEDDEEVMFTAAENT-PLIDYLRYNLPLEN------VPSVGTAGYKATK 141 QS+ ++VTE V F A PLI L LPL + V GT Y Sbjct: 114 LQSKFPVDSEVTEKSYSVRFVALGTADPLIHRLESELPLCDNAGNPLVALPGTPDYGEGP 173 Query: 142 PNYTDMVYRQIVVIGVDGRMDEAEYVAEVRPRVSLTKVGKQSFKAKEIDGTELTFGVY-- 199 D Q++++ Y AE P V L + + D +LT+ V Sbjct: 174 LLDADSAEYQLLLLYARRTSGGFIYRAEGYPAVKLDDQASKQRSKTDPDTADLTYKVLPN 233 Query: 200 -----PDPASGFPARRIP-------GGPFWAES 220 PDPA +P GGP WAE Sbjct: 234 EYFMRPDPAGTIAL--VPGYFYVWMGGPGWAEQ 264 >gi|8449|lcl|protein:vir:105827 Length: 269 # NCBI annotation: gp11 # Family: family:all:1912 # MgeID: mge:1636 # MgeName: PMC # Cross-refs: genbank:acc:YP_655772;genbank:gi:109522095;genbank:GeneI D:4157635 Length = 269 Score = 43.9 bits (102), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 59/213 (27%), Positives = 81/213 (38%), Gaps = 35/213 (16%) Query: 40 FTPFDPTDGNLKDTLLSEDFPGGRF----------YEIGAITEDG-VEFNPKFSTDDTKI 88 ++PF DG L+D L G++ + IG EDG E P ++DD + Sbjct: 55 WSPF-AQDGKLRDDLFIRRKVNGKYEYNTDPNEGWWHIGCNPEDGGAEREPDVTSDDLMV 113 Query: 89 WQSRRAQRTDVTEDDEEVMFTAAENT-PLIDYLRYNLPLEN------VPSVGTAGYKATK 141 QS+ ++VTE V F A PLI L LPL + V GT Y Sbjct: 114 LQSKFPVDSEVTEKSYSVRFVALGTADPLIHRLESELPLCDNAGNPLVALPGTPDYGEGP 173 Query: 142 PNYTDMVYRQIVVIGVDGRMDEAEYVAEVRPRVSLTKVGKQSFKAKEIDGTELTFGVY-- 199 D Q++++ Y AE P V L + + D +LT+ V Sbjct: 174 LLDADSAEYQLLLLYARRTSGGFIYRAEGYPAVKLDDQASKQRSKTDPDTADLTYKVLPN 233 Query: 200 -----PDPASGFPARRIP-------GGPFWAES 220 PDPA +P GGP WAE Sbjct: 234 EYFMRPDPAGTIAL--VPGYFYVWMGGPGWAEQ 264 >gi|9704|lcl|protein:vir:102610 Length: 269 # NCBI annotation: gp11 # Family: family:all:1912 # MgeID: mge:1661 # MgeName: Llij # Cross-refs: genbank:acc:YP_655007;genbank:gi:109392197;genbank:GeneI D:4157232 Length = 269 Score = 43.9 bits (102), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 59/213 (27%), Positives = 81/213 (38%), Gaps = 35/213 (16%) Query: 40 FTPFDPTDGNLKDTLLSEDFPGGRF----------YEIGAITEDG-VEFNPKFSTDDTKI 88 ++PF DG L+D L G++ + IG EDG E P ++DD + Sbjct: 55 WSPF-AQDGKLRDDLFIRRKVNGKYEYNTDPNEGWWHIGCNPEDGGAEREPDVTSDDLMV 113 Query: 89 WQSRRAQRTDVTEDDEEVMFTAAENT-PLIDYLRYNLPLEN------VPSVGTAGYKATK 141 QS+ ++VTE V F A PLI L LPL + V GT Y Sbjct: 114 LQSKFPVDSEVTEKSYSVRFVALGTADPLIHRLESELPLCDNAGNPLVALPGTPDYGEGP 173 Query: 142 PNYTDMVYRQIVVIGVDGRMDEAEYVAEVRPRVSLTKVGKQSFKAKEIDGTELTFGVY-- 199 D Q++++ Y AE P V L + + D +LT+ V Sbjct: 174 LLDADSAEYQLLLLYARRTSGGFIYRAEGYPAVKLDDQASKQRSKTDPDTADLTYKVLPN 233 Query: 200 -----PDPASGFPARRIP-------GGPFWAES 220 PDPA +P GGP WAE Sbjct: 234 EYFMRPDPAGTIAL--VPGYFYVWMGGPGWAEQ 264 >gi|12981|lcl|protein:vir:80670 Length: 213 # NCBI annotation: gp11 # Family: family:all:698 # MgeID: mge:1884 # MgeName: PA6 # Cross-refs: genbank:acc:YP_001285587;genbank:gi:148727093;genbank:Ge neID:5247041 Length = 213 Score = 37.0 bits (84), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 8/134 (5%) Query: 67 IGAITEDGVEFNPKFSTDDTKIWQSRRAQRTDVTEDDEEVMFTAAENTPLIDYLRYNLPL 126 +G +++DG + P+ TDD K WQ+ RT TE E+ F E+ + L + Sbjct: 42 LGYLSDDGFKIKPERKTDDLKAWQNADVVRTVATESSIEISFQLIESKKEVIELFWQ--- 98 Query: 127 ENVPSVGTAGYKATKPNYTDMVYRQIVVIGVDGRMDEAEYVAEVRPRVSLTKVGKQSFKA 186 V + +G P T V+ ++ I VDG + + P V L + K Sbjct: 99 SKVTAGADSGSFDISPGATTGVHALLMDI-VDGD----QVIRYYFPEVELIDRDEIKGKN 153 Query: 187 KEIDGTELTFGVYP 200 E+ G +T YP Sbjct: 154 GEVYGYGVTLKAYP 167 >gi|10070|lcl|protein:vir:99006 Length: 303 # NCBI annotation: gp35 # Family: family:all:698 # MgeID: mge:1671 # MgeName: Wildcat # Cross-refs: genbank:acc:YP_655900;genbank:gi:109521472;genbank:GeneI D:4157971 Length = 303 Score = 31.2 bits (69), Expect = 0.018, Method: Compositional matrix adjust. Identities = 22/99 (22%), Positives = 37/99 (37%) Query: 119 YLRYNLPLENVPSVGTAGYKATKPNYTDMVYRQIVVIGVDGRMDEAEYVAEVRPRVSLTK 178 Y L N+ G P ++ + +++G D E + + P+V LT+ Sbjct: 108 YWGIELDATNLTVSAQGGVTVKAPPRPKNIFYRCILLGQDEVNGEDLFPYWILPKVKLTE 167 Query: 179 VGKQSFKAKEIDGTELTFGVYPDPASGFPARRIPGGPFW 217 V F+ +TF + DP F + GP W Sbjct: 168 VDNMDFRDDAEIQYRMTFQAFRDPEGKFSVIQGWCGPGW 206 >gi|18502|lcl|protein:vir:1644 Length: 185 # NCBI annotation: Structural protein # Family: family:all:698 # MgeID: mge:33 # MgeName: r1t # Cross-refs: genbank:acc:NP_695065;genbank:gi:23455756;genbank:GeneID :955486 Length = 185 Score = 27.3 bits (59), Expect = 0.28, Method: Compositional matrix adjust. Identities = 31/140 (22%), Positives = 58/140 (41%), Gaps = 6/140 (4%) Query: 64 FYEIGAITEDGVEFNPKFSTDDTKIWQSRRAQRTDVTEDDEEVMFTAAENTPLIDYLRYN 123 F +G I+EDG++ +D K W TE ++ +T E ++ L+ Sbjct: 39 FKPLGYISEDGLKNKNSPKSDSIKAWGGDTVATVQ-TEKEDTFSYTLIEALN-VEVLKEV 96 Query: 124 LPLENVPSVGTAGYKATKPNYTDMVYRQIVVIGVDGRMDEAEYVAEVRPRVSLTKVGKQS 183 +NV G K N +++ +V +D + + V P+ ++++G S Sbjct: 97 YGADNVTGTLKTGI-TVKANSKELIEHPVV---IDMTVRNGVFKRIVIPQGKVSEIGDIS 152 Query: 184 FKAKEIDGTELTFGVYPDPA 203 + + G E+T PD A Sbjct: 153 YNDSDAVGFEITLTGLPDKA 172 >gi|4248|lcl|protein:vir:94739 Length: 185 # NCBI annotation: major tail protein # Family: family:all:698 # MgeID: mge:1529 # MgeName: phi LC3 # Cross-refs: genbank:acc:NP_996712;genbank:gi:45597427;genbank:GeneID :2767963 Length = 185 Score = 26.9 bits (58), Expect = 0.31, Method: Compositional matrix adjust. Identities = 31/140 (22%), Positives = 58/140 (41%), Gaps = 6/140 (4%) Query: 64 FYEIGAITEDGVEFNPKFSTDDTKIWQSRRAQRTDVTEDDEEVMFTAAENTPLIDYLRYN 123 F +G I+EDG++ +D K W TE ++ +T E ++ L+ Sbjct: 39 FKPLGYISEDGLKNKNSPKSDSIKAWGGDTVATVQ-TEKEDTFSYTLIEALN-VEVLKEV 96 Query: 124 LPLENVPSVGTAGYKATKPNYTDMVYRQIVVIGVDGRMDEAEYVAEVRPRVSLTKVGKQS 183 +NV G K N +++ +V +D + + V P+ ++++G S Sbjct: 97 YGADNVTGTLKTGI-TVKANSKELIEHPVV---IDMTVRNGVFKRIVIPQGKVSEIGDIS 152 Query: 184 FKAKEIDGTELTFGVYPDPA 203 + + G E+T PD A Sbjct: 153 YNDSDAVGFEITLTGLPDKA 172 >gi|13490|lcl|protein:vir:9765 Length: 196 # NCBI annotation: putative structural protein # Family: family:all:698 # MgeID: mge:175 # MgeName: 315.3 # Cross-refs: genbank:acc:NP_795527;genbank:gi:28876277;genbank:GeneID :1257818 Length = 196 Score = 25.8 bits (55), Expect = 0.81, Method: Compositional matrix adjust. Identities = 32/139 (23%), Positives = 57/139 (41%), Gaps = 6/139 (4%) Query: 63 RFYEIGAITEDGVEFNPKFSTDDTKIWQSRRAQRTDVTEDDEEVMFTAAENTPLIDYLRY 122 +F +G ++EDGV S+++ K W TE +++ + E+ ++ L+ Sbjct: 39 KFKNLGYVSEDGVVNEDTRSSENIKAWGGDIVGSVQ-TEKEDKFTYKLIESLN-VEVLKE 96 Query: 123 NLPLENVPSVGTAGYKATKPNYTDMVYRQIVVIGVDGRMDEAEYVAEVRPRVSLTKVGKQ 182 NV G K N ++ IV +D M+ V P + +VG+ Sbjct: 97 VYGAANVTGDLDKGIH-IKSNSKELEAHAIV---IDMIMNGGILKRIVLPNAKVDEVGEI 152 Query: 183 SFKAKEIDGTELTFGVYPD 201 + E+ G E T +PD Sbjct: 153 KYVDGEVVGYETTLKCFPD 171 >gi|19650|lcl|protein:vir:10361 Length: 561 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:183 # MgeName: Xp10 # Cross-refs: genbank:acc:NP_858953;genbank:gi:32128418;genbank:GeneID :2648405 Length = 561 Score = 25.4 bits (54), Expect = 0.98, Method: Compositional matrix adjust. Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 8/76 (10%) Query: 158 DGRMDEAEYVAEVRPR----VSLTKVGKQSFKAKEIDGTELT--FGVYPDPASGFPAR-- 209 DGR E + V P V + + +AK I G EL + + G R Sbjct: 266 DGRAMTLEGIKLVNPSLGYSVDMNYLEDAYERAKNIGGGELLDYLAKHANVQIGMNLRND 325 Query: 210 RIPGGPFWAESGGPVL 225 R G FWA++ P L Sbjct: 326 RFAGADFWAQNADPTL 341 >gi|23580|lcl|protein:vir:102747 Length: 622 # NCBI annotation: terminase large subunit # Family: family:all:11211 # MgeID: mge:1610 # MgeName: YS40 # Cross-refs: genbank:acc:YP_874075;genbank:gi:118197682;genbank:GeneI D:4495939 Length = 622 Score = 25.0 bits (53), Expect = 1.1, Method: Compositional matrix adjust. Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 3/58 (5%) Query: 77 FNPKFSTDDTKIWQSRRAQRTDVTEDDEEVMFTAAENTPLIDYLRYNLPLENVPSVGT 134 ++P + + + + R ++ D D + M ++ ++ YL NLPL+ + VGT Sbjct: 521 YHPILFWELSNLIEDREKKKVDHKPDTSKDM---SDTVAILTYLLVNLPLQTISIVGT 575 >gi|12378|lcl|protein:vir:79648 Length: 523 # NCBI annotation: TerL # Family: family:all:144 # MgeID: mge:1872 # MgeName: TLS # Cross-refs: genbank:acc:YP_001285519;genbank:gi:148734502;genbank:Ge neID:5220006 Length = 523 Score = 24.6 bits (52), Expect = 1.5, Method: Compositional matrix adjust. Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 9/85 (10%) Query: 41 TPFDPTDGNLKDTLLSEDFPGGRFYEIGAITEDGVEF-------NPKFSTD--DTKIWQS 91 T F+ T G+ K LLS FP + ++ + + F N K D +++ WQ Sbjct: 63 TIFNVTPGSGKTELLSIHFPPYSYLKLNKVRNLNISFADTLVKRNSKRVRDLVNSREWQE 122 Query: 92 RRAQRTDVTEDDEEVMFTAAENTPL 116 +T ++DDE + A L Sbjct: 123 LYPAKTGTSKDDEFQILNDAGKVRL 147 >gi|19539|lcl|protein:vir:10320 Length: 627 # NCBI annotation: ORF22 # Family: family:all:140 # MgeID: mge:182 # MgeName: VHML # Cross-refs: genbank:acc:NP_758915;genbank:gi:27311189;genbank:GeneID :956138 Length = 627 Score = 22.3 bits (46), Expect = 8.1, Method: Compositional matrix adjust. Identities = 9/18 (50%), Positives = 12/18 (66%) Query: 52 DTLLSEDFPGGRFYEIGA 69 DTLL + +PGG +GA Sbjct: 133 DTLLKKVYPGGSLTLVGA 150 >gi|7515|lcl|protein:vir:99926 Length: 204 # NCBI annotation: gp13 # Family: family:all:698 # MgeID: mge:1611 # MgeName: Halo # Cross-refs: genbank:acc:YP_655530;genbank:gi:109392300;genbank:Gene ID:4157095 Length = 204 Score = 22.3 bits (46), Expect = 8.5, Method: Compositional matrix adjust. Identities = 9/30 (30%), Positives = 15/30 (50%) Query: 64 FYEIGAITEDGVEFNPKFSTDDTKIWQSRR 93 F +G ++ DGV + ST ++W R Sbjct: 51 FKSLGYVSSDGVTISIDGSTTPIEVWSGER 80 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.313 0.132 0.393 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 168,521 Number of Sequences: 514 Number of extensions: 8579 Number of successful extensions: 36 Number of sequences better than 100.0: 24 Number of HSP's better than 100.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 8 Number of HSP's gapped (non-prelim): 24 length of query: 323 length of database: 206,069 effective HSP length: 72 effective length of query: 251 effective length of database: 169,061 effective search space: 42434311 effective search space used: 42434311 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 37 (18.9 bits)