Query lcl|NC_011056.1_cdsid_YP_002014484.1 [gene=Kostya_16] [protein=gp16] [protein_id=YP_002014484.1] [location=10257..10592] Match_columns 111 No_of_seqs 1 out of 4 Neff 1.0 Searched_HMMs 1612 Date Thu Nov 7 14:10:39 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_16 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_16_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:101653 Length: 111 100.0 9.4E-52 5.8E-55 300.3 7.7 111 1-111 1-111 (111) 2 protein:vir:7858 Length: 111 # 100.0 9.4E-52 5.8E-55 300.3 7.7 111 1-111 1-111 (111) 3 protein:vir:8431 Length: 114 # 100.0 1.2E-40 7.3E-44 239.5 7.1 106 2-111 1-114 (114) 4 protein:vir:8105 Length: 131 # 100.0 9.1E-36 5.7E-39 212.7 7.1 105 1-111 2-131 (131) 5 protein:vir:8328 Length: 119 # 95.8 9E-05 5.6E-08 42.8 7.0 106 2-111 1-119 (119) 6 protein:vir:80934 Length: 120 33.9 1.3 0.00082 19.9 5.9 92 1-105 10-120 (120) 7 protein:vir:44 Length: 120 # N 32.0 1.5 0.0009 19.7 6.0 92 1-105 10-120 (120) 8 protein:vir:81216 Length: 118 26.5 1.6 0.00099 19.5 4.8 102 1-111 1-118 (118) 9 protein:vir:96107 Length: 133 9.2 5.7 0.0036 16.4 3.3 102 1-104 13-133 (133) 10 protein:vir:98924 Length: 113 4.8 14 0.0088 14.3 6.1 99 1-105 3-113 (113) No 1 >protein:vir:101653 Length: 111 # NCBI annotation: gp16 # Family: family:all:3991 # MgeID: mge:1515 # MgeName: 244 # Cross-refs: genbank:acc:YP_654771;genbank:gi:109302769;genbank:GeneID:4156087 Probab=100.00 E-value=9.4e-52 Score=300.33 Aligned_cols=111 Identities=93% Similarity=1.524 Sum_probs=110.9 Q ss_pred CcccccceeeEEeecCCCcccccccchhhcccccceeecccccceeEEeeeeecCCcccccccCCCCceeeeccCCeeee Q lcl|NC_011056. 1 MERIGEDTVTFVKIGKGGRSDRGIPQAVEESSEDVEWCSFQPLGVHYHVTDVSLPDATDRCLAPPVPAAIECKAGDKLTF 80 (111) Q Consensus 1 merigedtvtfvkigkggrsdrgipqaveessedvewcsfqplgvhyhvtdvslpdatdrclappvpaaieckagdkltf 80 (111) |||+|++|||||-|++|+++|+|+|||+++++-++.||+||||++|||+++|++|++|+||+|||+||++-|||+|+|.| T Consensus 1 ~e~fG~~tVtfV~i~e~~~~~~G~~~~v~~T~~~~pgc~frPl~~~~~~~~va~~~~t~~~~app~pa~lA~k~~~~li~ 80 (111) T protein:vir:10 1 MERIGEDTVTFVQIGKGAKSDRGIPQAVEESSTDVQWCSFQPLGVHYHVTDVSLPDATDRCLAPPVPAAVACKAGDKLIF 80 (111) T ss_pred CccccCceEEEEEeccCCCCCCCCccchheeecCCCceeeccccccccccccccccccccccCCCcceEEEeCCCCeEEE Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cchheeeehhcccccccceeeeeeeeecccC Q lcl|NC_011056. 81 HGVSHLVLGVRDHWDKGKLHHLTVITKRWEQ 111 (111) Q Consensus 81 hgvshlvlgvrdhwdkgklhhltvitkrweq 111 (111) |||+|+++|++++||+||+||+|+|+||||| T Consensus 81 dGv~~~i~G~~~~f~dg~~~~~TIi~kR~e~ 111 (111) T protein:vir:10 81 HGVSHLVLGVRDHWDKGKLHHLTVITKRWEQ 111 (111) T ss_pred cceeeEEeeeeeeccCCCceEEEEEeeeccC Confidence 9999999999999999999999999999999 No 2 >protein:vir:7858 Length: 111 # NCBI annotation: gp15 # Family: family:all:3991 # MgeID: mge:150 # MgeName: CJW1 # Cross-refs: genbank:acc:NP_817465;genbank:gi:29565894;genbank:GeneID:1259087 Probab=100.00 E-value=9.4e-52 Score=300.33 Aligned_cols=111 Identities=93% Similarity=1.524 Sum_probs=110.9 Q ss_pred CcccccceeeEEeecCCCcccccccchhhcccccceeecccccceeEEeeeeecCCcccccccCCCCceeeeccCCeeee Q lcl|NC_011056. 1 MERIGEDTVTFVKIGKGGRSDRGIPQAVEESSEDVEWCSFQPLGVHYHVTDVSLPDATDRCLAPPVPAAIECKAGDKLTF 80 (111) Q Consensus 1 merigedtvtfvkigkggrsdrgipqaveessedvewcsfqplgvhyhvtdvslpdatdrclappvpaaieckagdkltf 80 (111) |||+|++|||||-|++|+++|+|+|||+++++-++.||+||||++|||+++|++|++|+||+|||+||++-|||+|+|.| T Consensus 1 ~e~fG~~tVtfV~i~e~~~~~~G~~~~v~~T~~~~pgc~frPl~~~~~~~~va~~~~t~~~~app~pa~lA~k~~~~li~ 80 (111) T protein:vir:78 1 MERIGEDTVTFVQIGKGAKSDRGIPQAVEESSTDVQWCSFQPLGVHYHVTDVSLPDATDRCLAPPVPAAVACKAGDKLIF 80 (111) T ss_pred CccccCceEEEEEeccCCCCCCCCccchheeecCCCceeeccccccccccccccccccccccCCCcceEEEeCCCCeEEE Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cchheeeehhcccccccceeeeeeeeecccC Q lcl|NC_011056. 81 HGVSHLVLGVRDHWDKGKLHHLTVITKRWEQ 111 (111) Q Consensus 81 hgvshlvlgvrdhwdkgklhhltvitkrweq 111 (111) |||+|+++|++++||+||+||+|+|+||||| T Consensus 81 dGv~~~i~G~~~~f~dg~~~~~TIi~kR~e~ 111 (111) T protein:vir:78 81 HGVSHLVLGVRDHWDKGKLHHLTVITKRWEQ 111 (111) T ss_pred cceeeEEeeeeeeccCCCceEEEEEeeeccC Confidence 9999999999999999999999999999999 No 3 >protein:vir:8431 Length: 114 # NCBI annotation: gp26 # Family: family:all:3991 # MgeID: mge:155 # MgeName: Omega # Cross-refs: genbank:acc:NP_818327;genbank:gi:29566763;genbank:GeneID:1260060 Probab=100.00 E-value=1.2e-40 Score=239.50 Aligned_cols=106 Identities=36% Similarity=0.593 Sum_probs=103.7 Q ss_pred cccccceeeEEeecCCC--cccccccchhhcccccceeeccccc----ceeEEeeeeecCCcccccccCCCCceeeeccC Q lcl|NC_011056. 2 ERIGEDTVTFVKIGKGG--RSDRGIPQAVEESSEDVEWCSFQPL----GVHYHVTDVSLPDATDRCLAPPVPAAIECKAG 75 (111) Q Consensus 2 erigedtvtfvkigkgg--rsdrgipqaveessedvewcsfqpl----gvhyhvtdvslpdatdrclappvpaaieckag 75 (111) -++|++|||||-|+++| ++|+|+||+++ ++-++.||+|||| ++|||++++++|+ ||+|||+||+.-|||+ T Consensus 1 m~fG~~tVtfV~i~e~~~~~~~~G~~~~vr-T~~~~pgc~frPlt~~e~~~~~~~~~t~~w---k~taPp~~av~A~k~~ 76 (114) T protein:vir:84 1 MKFGGQTVTFVTITEDLDDRDDYGNPREIR-TEVPVPGCRFRPLTAKEKVEFGYNTVADPW---RCTAPPVPAVMAAGAT 76 (114) T ss_pred CccCCceEEEEEeccCCCCCCCCCCchhhe-eecCCCceeecccccccccccceeecccch---hhccCcchhheeeCCC Confidence 57999999999999999 79999999998 8999999999999 9999999999998 9999999999999999 Q ss_pred Ceeeecchheeeehhcccccc--cceeeeeeeeecccC Q lcl|NC_011056. 76 DKLTFHGVSHLVLGVRDHWDK--GKLHHLTVITKRWEQ 111 (111) Q Consensus 76 dkltfhgvshlvlgvrdhwdk--gklhhltvitkrweq 111 (111) |+|.||||+|+++|.+++||+ ||+||+|+|+||||- T Consensus 77 ~~li~dGv~~~i~G~~~~f~~~~Gk~~~~TIi~kR~e~ 114 (114) T protein:vir:84 77 GELIYDGVTYEITGGARTFPNFAGKPFKVTIICERREV 114 (114) T ss_pred CeEEEcceeeEEecchhhccccCCceeEEEEEeeeecC Confidence 999999999999999999999 999999999999999 No 4 >protein:vir:8105 Length: 131 # NCBI annotation: gp9 # Family: family:all:3991 # MgeID: mge:152 # MgeName: Che9c # Cross-refs: genbank:acc:NP_817686;genbank:gi:29566117;genbank:GeneID:1259311 Probab=100.00 E-value=9.1e-36 Score=212.68 Aligned_cols=105 Identities=29% Similarity=0.473 Sum_probs=102.8 Q ss_pred CcccccceeeEEeecCCCcccccccchhhcccccceeecccccceeEEeeeeecCC-----ccc--ccccCCCCceeeec Q lcl|NC_011056. 1 MERIGEDTVTFVKIGKGGRSDRGIPQAVEESSEDVEWCSFQPLGVHYHVTDVSLPD-----ATD--RCLAPPVPAAIECK 73 (111) Q Consensus 1 merigedtvtfvkigkggrsdrgipqaveessedvewcsfqplgvhyhvtdvslpd-----atd--rclappvpaaieck 73 (111) -|++|++|||||-|++|+++|+|+|+|.++++-++.||+|||| |++++|| ||| ||+|||+||+.-|| T Consensus 2 ~e~fG~qtVtfV~i~e~~~~~~g~~~a~~rT~t~~pgc~frPl------t~~et~d~q~nvat~~Wk~taPPt~av~A~k 75 (131) T protein:vir:81 2 SEEFGGQVVALVGVAETGAPGWGGLKAKARTTTRQPGVHFRPA------SSIETPDGQTNVATEVWKLTAPPTAAVLAAK 75 (131) T ss_pred ccccccceEEEEEeccCCCCCCCCccceeeeecCCCceeeccc------cccccccccccccccceeccCCCchheeEeC Confidence 7999999999999999999999999999999999999999999 9999999 999 99999999999999 Q ss_pred cCCeeeecchheeeehhcc---------cccc---------cceeeeeeeeecccC Q lcl|NC_011056. 74 AGDKLTFHGVSHLVLGVRD---------HWDK---------GKLHHLTVITKRWEQ 111 (111) Q Consensus 74 agdkltfhgvshlvlgvrd---------hwdk---------gklhhltvitkrweq 111 (111) ++|+|.||||+|++++++| |||+ ||+||+|+|+||--- T Consensus 76 ~~~eli~dGve~~~~~~~ds~~G~a~tFh~d~~~~~~~d~~Gk~~~vTIi~kR~~g 131 (131) T protein:vir:81 76 PDGELVYDGTEHPEALDLDSAAGRAATFHIDGPIMPKYDLDGQVHHVTIMCKRQAG 131 (131) T ss_pred CCCeEEEccccccccccccccccceeeeccccccccccccCCceeEEEEEeeeccC Confidence 9999999999999999999 9999 999999999999666 No 5 >protein:vir:8328 Length: 119 # NCBI annotation: gp45 # Family: family:all:3991 # MgeID: mge:154 # MgeName: Corndog # Cross-refs: genbank:acc:NP_817896;genbank:gi:29566329;genbank:GeneID:1259524 Probab=95.85 E-value=9e-05 Score=42.76 Aligned_cols=106 Identities=25% Similarity=0.359 Sum_probs=74.8 Q ss_pred cccccceeeEEeecCCCcc-cccccchh-hcccccceeecccccceeEEeeeeecCCccc--ccccC-------CCCcee Q lcl|NC_011056. 2 ERIGEDTVTFVKIGKGGRS-DRGIPQAV-EESSEDVEWCSFQPLGVHYHVTDVSLPDATD--RCLAP-------PVPAAI 70 (111) Q Consensus 2 erigedtvtfvkigkggrs-drgipqav-eessedvewcsfqplgvhyhvtdvslpdatd--rclap-------pvpaai 70 (111) -..|..|||||-+-.++.. +-|.+..+ -|- .+-=|.|.||-.--- .|...--||+ +|-+| |+|+.. T Consensus 1 m~FGgqtVtfV~~td~~~pg~~G~~~~~rTev--~~PGcrfRPlt~~Et-~e~q~nvat~~Wk~TaP~~~~~~~p~~av~ 77 (119) T protein:vir:83 1 MPFGASTVTFVVHTDGATPGELGTYPQVKTEV--SAPGCRHRPLTFRET-AELQFDVATQIWKTTLPVGEYSPTLLSQIR 77 (119) T ss_pred CCcCceeEEEEEEeccCCccccCCccceeeec--CCCceeeccccceec-cccccccccceeeeccCccccccccchhhe Confidence 4689999999999877644 45554433 332 345688888753211 1222223444 89999 999999 Q ss_pred eeccCCeeeecchheeeehhccccc--ccceeeeeeeeecccC Q lcl|NC_011056. 71 ECKAGDKLTFHGVSHLVLGVRDHWD--KGKLHHLTVITKRWEQ 111 (111) Q Consensus 71 eckagdkltfhgvshlvlgvrdhwd--kgklhhltvitkrweq 111 (111) -.++-|.|.+-||.|-..|--.-+| .| -.|.|+|.||--- T Consensus 78 Aa~pdgel~yDGveysi~Gga~tF~~faG-PfkvTIickR~~g 119 (119) T protein:vir:83 78 AVQPDDTIRVDGVEYSIIGGVQIFDDFAG-PFKATIISKRHIG 119 (119) T ss_pred eeCCCCcEEEcceeeeeecceeeccccCC-ceEEEEEeeeccC Confidence 9999999999999999988554442 24 5699999999666 No 6 >protein:vir:80934 Length: 120 # NCBI annotation: gp9 # Family: family:all:2747 # MgeID: mge:1886 # MgeName: A500 # Cross-refs: genbank:acc:YP_001468395;genbank:gi:157324969;genbank:GeneID:5601367 Probab=33.86 E-value=1.3 Score=19.91 Aligned_cols=92 Identities=17% Similarity=0.212 Sum_probs=51.1 Q ss_pred Cc----ccccceeeEEe-ecCCCcccccccchhhcccccceeecccccceeEEeeeeecCCccc--------cccc---C Q lcl|NC_011056. 1 ME----RIGEDTVTFVK-IGKGGRSDRGIPQAVEESSEDVEWCSFQPLGVHYHVTDVSLPDATD--------RCLA---P 64 (111) Q Consensus 1 me----rigedtvtfvk-igkggrsdrgipqaveessedvewcsfqplgvhyhvtdvslpdatd--------rcla---p 64 (111) |- |.=-|++|+-. .|++.- | +.+-...-.++=|.|||- +.+|.-.-.+ -|-| - T Consensus 10 m~~iPk~~l~~sit~k~~~~~d~~---g--~~~y~~pv~I~nvRvd~~------~~ysg~~n~rq~~~naviFi~a~~S~ 78 (120) T protein:vir:80 10 APPLPLDWLIHNISYEAYKEEGRH---N--QVVYEKGFEIEHVRVDFS------KSNQIAGLSDSDRYDAVIFIDAVNSM 78 (120) T ss_pred cCCcChhhccceEEEEEecCCCCC---C--CccccCceeccCeEEecc------eeeecCCCCceeeeeeEEEEecccCC Confidence 32 33456776644 233221 1 111111223778999972 2333321111 1212 3 Q ss_pred CCCceeeeccCCeeeecchheeeehhcccc-cccceee--eeee Q lcl|NC_011056. 65 PVPAAIECKAGDKLTFHGVSHLVLGVRDHW-DKGKLHH--LTVI 105 (111) Q Consensus 65 pvpaaieckagdkltfhgvshlvlgvrdhw-dkgklhh--ltvi 105 (111) |+| .--|.|.|+.|-|-.+.+-++-+-. ..|++|| |.|| T Consensus 79 p~~--~~~~~gskI~f~G~eytI~~i~~~~~~s~~vh~yEleVi 120 (120) T protein:vir:80 79 NVP--DDFISRSRIFFSGKAYKIVKVIPCYATSENVHHWEIEVI 120 (120) T ss_pred ccc--eecccCCEEEeCCceEEEEEeeeccCCCCceeEEEEEeC Confidence 333 3347799999999999999998876 5688998 4567 No 7 >protein:vir:44 Length: 120 # NCBI annotation: gp9 # Family: family:all:2747 # MgeID: mge:2 # MgeName: A118 # Cross-refs: genbank:acc:NP_463470;swissprot:trembl:q9t1b4;genbank:gi:16798792;uniprot:Q9T1B4;genbank:GeneID:922373 Probab=32.05 E-value=1.5 Score=19.69 Aligned_cols=92 Identities=16% Similarity=0.203 Sum_probs=50.9 Q ss_pred Cc----ccccceeeEEe-ecCCCcccccccchhhcccccceeecccccceeEEeeeeecCCccc--------cccc---C Q lcl|NC_011056. 1 ME----RIGEDTVTFVK-IGKGGRSDRGIPQAVEESSEDVEWCSFQPLGVHYHVTDVSLPDATD--------RCLA---P 64 (111) Q Consensus 1 me----rigedtvtfvk-igkggrsdrgipqaveessedvewcsfqplgvhyhvtdvslpdatd--------rcla---p 64 (111) |- |.=-|++|+-. .|++. -| +.+-...-.++=|.|||- +.+|.-.-.+ -|-| - T Consensus 10 m~~iPk~~l~~sit~k~~~~~d~---~g--~~~y~~pv~I~nvRvd~~------~~ysg~~n~rq~~~naviFi~a~~S~ 78 (120) T protein:vir:44 10 APPLPLDWLIHNISYEAYKEEDR---HN--QVVYEKGIEIEHVRVDFS------KSNQIAGLSDSDRYDAVIFIDAVNSM 78 (120) T ss_pred cCCcChhhccceEEEEEecCCCC---CC--CCcccCceeccCeEEecc------eeeecCCCCceeeeeeEEEEecccCC Confidence 32 33456776644 23222 11 111111223778999973 2333321111 1222 3 Q ss_pred CCCceeeeccCCeeeecchheeeehhcccc-cccceee--eeee Q lcl|NC_011056. 65 PVPAAIECKAGDKLTFHGVSHLVLGVRDHW-DKGKLHH--LTVI 105 (111) Q Consensus 65 pvpaaieckagdkltfhgvshlvlgvrdhw-dkgklhh--ltvi 105 (111) |+| .--|.|.|+.|-|-.|.+-++-+-. ..+++|| |.|| T Consensus 79 p~~--~~~~~gskI~f~G~eytI~~i~~~~~~sn~vh~yEleVi 120 (120) T protein:vir:44 79 NVP--SDFVSRSRIFFSGKAYKIVKVIPCYATSNSVHHWEIEVI 120 (120) T ss_pred ccc--eecCcCCEEEeCCceEEEEeeeeccCCCCceEEEEEEeC Confidence 333 3347799999999999999998876 5688998 4567 No 8 >protein:vir:81216 Length: 118 # NCBI annotation: gp9 # Family: family:all:10295 # MgeID: mge:1893 # MgeName: BFK20 # Cross-refs: genbank:acc:YP_001456739;genbank:gi:157168382;uniprot:Q9MBJ6;genbank:GeneID:5580339 Probab=26.48 E-value=1.6 Score=19.47 Aligned_cols=102 Identities=19% Similarity=0.261 Sum_probs=61.2 Q ss_pred CcccccceeeEEeecCCCcccccc--c----chhhcccccceeecccccceeEEeeeeecCCccc-----ccccCCCCce Q lcl|NC_011056. 1 MERIGEDTVTFVKIGKGGRSDRGI--P----QAVEESSEDVEWCSFQPLGVHYHVTDVSLPDATD-----RCLAPPVPAA 69 (111) Q Consensus 1 merigedtvtfvkigkggrsdrgi--p----qaveessedvewcsfqplgvhyhvtdvslpdatd-----rclappvpaa 69 (111) |--|=...|+.++.|+-. |.+|- + .+++ -.-.+. ||.||.|-- .+-++.+ --+.-|--.+ T Consensus 1 m~~~F~~~v~ilRa~~~~-~~yg~d~~~dw~~pv~-ipV~~~-vSvQPv~St------E~~~~r~~vVt~w~l~~Ppg~d 71 (118) T protein:vir:81 1 MTVIFVNAVTVLRAREVG-SVYSSEKTLTWDDPVR-IDVPFL-VSVQPRGST------EGGTDRPTVVSAWWMCTPPGTD 71 (118) T ss_pred CeeeeeeeEEEecCCccc-cccCCCcccccCCcee-eeccCc-ceeeecCcc------ccCCCCceeeeeeEeecCCCCC Confidence 887878888888887422 11111 0 1111 111122 999998821 1222221 1233343457 Q ss_pred eeeccCCeeeec-chheeeehhcccc----cccceeeeeeeeecccC Q lcl|NC_011056. 70 IECKAGDKLTFH-GVSHLVLGVRDHW----DKGKLHHLTVITKRWEQ 111 (111) Q Consensus 70 ieckagdkltfh-gvshlvlgvrdhw----dkgklhhltvitkrweq 111 (111) |+.+|-|.+.+- |+---|-|---+| ..+.+||+...-|.-.- T Consensus 72 ~~Lra~DRVr~a~G~~~eV~G~P~~wp~P~~t~~v~Hvea~LevvtG 118 (118) T protein:vir:81 72 LDLRPEDRVELATGLQLEVVGQPLRWPDPVNQDQVHHVEANLEVVDG 118 (118) T ss_pred cCCCccceeeeccccEEEEecCcccccCccccccccceeEEEEEecC Confidence 889999999996 9999999999999 67889996543332222 No 9 >protein:vir:96107 Length: 133 # NCBI annotation: conserved hypothetical protein ORF026 # Family: family:all:7161 # MgeID: mge:1597 # MgeName: F8 # Cross-refs: genbank:acc:YP_001294443;genbank:gi:149408340;genbank:GeneID:5237226 Probab=9.22 E-value=5.7 Score=16.42 Aligned_cols=102 Identities=14% Similarity=0.117 Sum_probs=63.5 Q ss_pred CcccccceeeEEeecCCCcccccccchhhcccccceeecccccceeEEeeeeecCCccc-ccccCC--CCceeeeccCCe Q lcl|NC_011056. 1 MERIGEDTVTFVKIGKGGRSDRGIPQAVEESSEDVEWCSFQPLGVHYHVTDVSLPDATD-RCLAPP--VPAAIECKAGDK 77 (111) Q Consensus 1 merigedtvtfvkigkggrsdrgipqaveessedvewcsfqplgvhyhvtdvslpdatd-rclapp--vpaaieckagdk 77 (111) ..-|+..+|-+.|...--..++|-=.++-++.++++ ||.||..-- -+.+.-|--..+ +-|-++ +-+--.=+|||. T Consensus 13 ~~VI~~Q~V~y~rf~~Rt~n~~gq~i~~y~~p~~i~-gS~Q~V~~~-~v~~~GLd~~~~Yv~lf~s~~i~~iqRg~agD~ 90 (133) T protein:vir:96 13 FSVIGTQLVQYRKFEQRTKNSQAQYVSVFGEPFQLA-ASIQRVRRD-QYVQFNLEFQRNYVMIFANFEMVDLDRDLAGDQ 90 (133) T ss_pred hhhhccccchhhcccccccccccceeeeecCCccce-eeEEecChh-heeecCcceeeeeeEeecCcceeecccCCCCCE Confidence 567899999999976666678998899999999998 999986432 223333321111 111111 111122368999 Q ss_pred eeecchheeeehhccccccc----------------ceeeeee Q lcl|NC_011056. 78 LTFHGVSHLVLGVRDHWDKG----------------KLHHLTV 104 (111) Q Consensus 78 ltfhgvshlvlgvrdhwdkg----------------klhhltv 104 (111) |.|||=-|=|.|+.|..-.. .--.||+ T Consensus 91 liwnGrr~~v~g~~dW~~QDGW~~~lcv~~G~~~ga~~~~~~~ 133 (133) T protein:vir:96 91 FIWTGRVFQLESQGSWFYQDGWGVCLAVDIGTAKLAEDGTLTF 133 (133) T ss_pred EEECCeEEEecccceeeeeccceEEEEEeecCCCCcCCceecC Confidence 99999999999987643210 0011222 No 10 >protein:vir:98924 Length: 113 # NCBI annotation: hypothetical protein # Family: family:all:2747 # MgeID: mge:1568 # MgeName: BCJA1c # Cross-refs: genbank:acc:YP_164421;genbank:gi:56694911;genbank:GeneID:3197315 Probab=4.77 E-value=14 Score=14.26 Aligned_cols=99 Identities=19% Similarity=0.217 Sum_probs=57.1 Q ss_pred Cccc----ccceeeEEee-cCCCcccccccchhhcccccceeecccccceeEEeeeeecC---CcccccccCCCCceeee Q lcl|NC_011056. 1 MERI----GEDTVTFVKI-GKGGRSDRGIPQAVEESSEDVEWCSFQPLGVHYHVTDVSLP---DATDRCLAPPVPAAIEC 72 (111) Q Consensus 1 meri----gedtvtfvki-gkggrsdrgipqaveessedvewcsfqplgvhyhvtdvslp---datdrclappvpaaiec 72 (111) |.+| =-|++|+-+- |++. -|=+ +-...-.++=|.|||- .-|-.|+-+.- .|.=-|-|----..++. T Consensus 3 m~~ipk~~l~~sit~k~~~~~dd---~g~~--~y~~pv~I~nvrv~~~-~~ysgt~n~rq~~~naviF~ya~~S~p~~~~ 76 (113) T protein:vir:98 3 MPKPPIDFLVDSFMYKEYMGENS---WSEP--EYARPVLISNCRIDRG-AEYTSTTSGRQLLYNAVVFCYEGMTTPLPQF 76 (113) T ss_pred cCcCChhhccceEEEEEecccCC---CCCc--ccCCcEeecceEeccc-ceeeccCCCceeeeeeEEEEecccCccceEe Confidence 4444 4567776543 3332 2322 2333345778999984 44555543321 12222222211223589 Q ss_pred ccCCeeeecchheeeehhcccc--cccceee--eeee Q lcl|NC_011056. 73 KAGDKLTFHGVSHLVLGVRDHW--DKGKLHH--LTVI 105 (111) Q Consensus 73 kagdkltfhgvshlvlgvrdhw--dkgklhh--ltvi 105 (111) ++++|+.|-|..+.+-.+-+-. -.+++|| |.|| T Consensus 77 ~~~skivfdG~eytI~~i~~~~e~~sn~v~~yELEVi 113 (113) T protein:vir:98 77 KAQSVLHFDGRDHVITKVIPNHEAYSKTLYSYELEVV 113 (113) T ss_pred cCCCeEEeCCcceEEeeeccCcCCCCCceeEEEEEEC Confidence 9999999999999888877766 3466665 7888 Done!