Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Gifsy-2 | Genbank acc : NC_010393

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 6) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 55

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	35	lcl\|NC_010393.1_cdsid_YP_001700678.1	HHsearch (proba=100.00%)
Portal	34	lcl\|NC_010393.1_cdsid_YP_001700677.1	HHsearch (proba=100.00%)
TermL	32	lcl\|NC_010393.1_cdsid_YP_001700675.1	Blast (e-value=0)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	33	lcl\|NC_010393.1_cdsid_YP_001700676.1	HHsearch (proba=99.95%)
Hc1	37	lcl\|NC_010393.1_cdsid_YP_001700680.1	HHsearch (proba=98.00%)
Ne1	38	lcl\|NC_010393.1_cdsid_YP_001700681.1	HHsearch (proba=100.00%)
Tc1	39	lcl\|NC_010393.1_cdsid_YP_001700682.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Ad1<->Hc1	4	2
Tc1<->Ad1	6	4
Ne1<->Ad1	5	3

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:79548 protein:vir:79246 protein:vir:99228	cdtI Phage MP22 DMS3	70 % 22 % 22 %
Portal	protein:vir:79538 protein:vir:96738 protein:vir:10321	cdtI VP882 VHML	62 % 22 % 22 %
TermL	protein:vir:79539 protein:vir:6384 protein:vir:10320	cdtI BcepNazgul VHML	68 % 41 % 25 %
Ad1	protein:vir:79544 protein:vir:96750 protein:vir:3419	cdtI VP882 lambda	46 % 24 % 28 %
Hc1	protein:vir:3426 protein:vir:395 protein:vir:97237	lambda N15 M6	29 % 27 % 20 %
Ne1	protein:vir:79555 protein:vir:396 protein:vir:3427	cdtI N15 lambda	42 % 37 % 34 %
Tc1	protein:vir:397 protein:vir:3428 protein:vir:79571	N15 lambda cdtI	58 % 54 % 52 %