BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|Aclame:protein:vir:98727|NCBI_annot:terminase|genbank:acc:Y P_851132;genbank:gi:117530289;genbank:GeneID:4484391 (592 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|21825|lcl|protein:vir:98727 Length: 592 # NCBI annotation: te... 1222 0.0 gi|23580|lcl|protein:vir:102747 Length: 622 # NCBI annotation: t... 64 4e-12 gi|19608|lcl|protein:vir:4081 Length: 518 # NCBI annotation: ter... 39 2e-04 gi|13853|lcl|protein:vir:4826 Length: 625 # NCBI annotation: ORF... 36 0.001 gi|26227|lcl|protein:vir:7745 Length: 738 # NCBI annotation: gp2... 33 0.012 gi|22566|lcl|protein:vir:107279 Length: 1007 # NCBI annotation: ... 32 0.014 gi|15101|lcl|protein:vir:3867 Length: 563 # NCBI annotation: put... 32 0.022 gi|17207|lcl|protein:vir:7405 Length: 646 # NCBI annotation: put... 29 0.14 gi|14802|lcl|protein:vir:1021 Length: 660 # NCBI annotation: ter... 27 0.51 gi|14114|lcl|protein:vir:3986 Length: 657 # NCBI annotation: put... 27 0.53 gi|7243|lcl|protein:vir:103223 Length: 168 # NCBI annotation: pu... 27 0.79 gi|15547|lcl|protein:vir:856 Length: 540 # NCBI annotation: puta... 26 1.0 gi|16631|lcl|protein:vir:9699 Length: 584 # NCBI annotation: hyp... 26 1.1 gi|4336|lcl|protein:vir:94893 Length: 540 # NCBI annotation: put... 26 1.3 gi|1848|lcl|protein:vir:93873 Length: 540 # NCBI annotation: put... 26 1.3 gi|2310|lcl|protein:vir:93989 Length: 540 # NCBI annotation: put... 26 1.3 gi|19080|lcl|protein:vir:1659 Length: 540 # NCBI annotation: ter... 26 1.3 gi|15774|lcl|protein:vir:6239 Length: 527 # NCBI annotation: gp3... 25 3.3 gi|6559|lcl|protein:vir:104336 Length: 523 # NCBI annotation: pu... 24 5.0 gi|19303|lcl|protein:vir:4792 Length: 149 # NCBI annotation: put... 23 7.5 >gi|21825|lcl|protein:vir:98727 Length: 592 # NCBI annotation: terminase # Family: family:all:11211 # MgeID: mge:1530 # MgeName: Ma-LMM01 # Cross-refs: genbank:acc:YP_851132;genbank:gi:117530289;genbank:GeneI D:4484391 Length = 592 Score = 1222 bits (3163), Expect = 0.0, Method: Compositional matrix adjust. Identities = 592/592 (100%), Positives = 592/592 (100%) Query: 1 MARKRKLDPIELFDELVYEGLAQVKTNHVIGIVEFAEQYLLAPGDRLFPPQRAILRALYN 60 MARKRKLDPIELFDELVYEGLAQVKTNHVIGIVEFAEQYLLAPGDRLFPPQRAILRALYN Sbjct: 1 MARKRKLDPIELFDELVYEGLAQVKTNHVIGIVEFAEQYLLAPGDRLFPPQRAILRALYN 60 Query: 61 EPLPEDELAILQRWAEQDVTTWVPDRSYVNMVLECGRRGGKSVLASICVLYEFYCLINLD 120 EPLPEDELAILQRWAEQDVTTWVPDRSYVNMVLECGRRGGKSVLASICVLYEFYCLINLD Sbjct: 61 EPLPEDELAILQRWAEQDVTTWVPDRSYVNMVLECGRRGGKSVLASICVLYEFYCLINLD 120 Query: 121 NPAKHYGLLSGSPIAIFVIARSGAQVNETLFGAIRGYASQSAYFKGLVNSGQIEILTQEI 180 NPAKHYGLLSGSPIAIFVIARSGAQVNETLFGAIRGYASQSAYFKGLVNSGQIEILTQEI Sbjct: 121 NPAKHYGLLSGSPIAIFVIARSGAQVNETLFGAIRGYASQSAYFKGLVNSGQIEILTQEI 180 Query: 181 RCQAKNIAIYAKHTNSQSLVGYSLKMLVLDEAARFEYNELGESKADDIWSNVAKGLSTFG 240 RCQAKNIAIYAKHTNSQSLVGYSLKMLVLDEAARFEYNELGESKADDIWSNVAKGLSTFG Sbjct: 181 RCQAKNIAIYAKHTNSQSLVGYSLKMLVLDEAARFEYNELGESKADDIWSNVAKGLSTFG 240 Query: 241 NKGKKIAISSAWSEGDYIQNLYKVATRDPRMVAFRLRTWDINLRPEVSEYSLKNSEDYIR 300 NKGKKIAISSAWSEGDYIQNLYKVATRDPRMVAFRLRTWDINLRPEVSEYSLKNSEDYIR Sbjct: 241 NKGKKIAISSAWSEGDYIQNLYKVATRDPRMVAFRLRTWDINLRPEVSEYSLKNSEDYIR 300 Query: 301 DPVTAALEYEGIRSSMHGSFFQKEYIEEAVKGLSCLDAHSIPLDITNGDDTRHYVSLQIT 360 DPVTAALEYEGIRSSMHGSFFQKEYIEEAVKGLSCLDAHSIPLDITNGDDTRHYVSLQIT Sbjct: 301 DPVTAALEYEGIRSSMHGSFFQKEYIEEAVKGLSCLDAHSIPLDITNGDDTRHYVSLQIT 360 Query: 361 RLERLSEGRSYLHVDYGLKKDSAAIAFVRSTKLEDGRWGVIVDGLLVWKPYSDRDNSGRG 420 RLERLSEGRSYLHVDYGLKKDSAAIAFVRSTKLEDGRWGVIVDGLLVWKPYSDRDNSGRG Sbjct: 361 RLERLSEGRSYLHVDYGLKKDSAAIAFVRSTKLEDGRWGVIVDGLLVWKPYSDRDNSGRG 420 Query: 421 IQRIVSYLDIEEKLVQICQARHISLCSFDSYQSQSTIQRLHAHGIRSIEMSTTNTAQLSY 480 IQRIVSYLDIEEKLVQICQARHISLCSFDSYQSQSTIQRLHAHGIRSIEMSTTNTAQLSY Sbjct: 421 IQRIVSYLDIEEKLVQICQARHISLCSFDSYQSQSTIQRLHAHGIRSIEMSTTNTAQLSY 480 Query: 481 YNLTRQLLNEGRLILPRDSTWTHSLMAEMGGILQLANGKITHNERASGKDIIDAVVNAVF 540 YNLTRQLLNEGRLILPRDSTWTHSLMAEMGGILQLANGKITHNERASGKDIIDAVVNAVF Sbjct: 481 YNLTRQLLNEGRLILPRDSTWTHSLMAEMGGILQLANGKITHNERASGKDIIDAVVNAVF 540 Query: 541 NCVKEDSTLMGFSVSSSGIKSISSKTLKKNRELTTARGKGLLLAARKRRPSI 592 NCVKEDSTLMGFSVSSSGIKSISSKTLKKNRELTTARGKGLLLAARKRRPSI Sbjct: 541 NCVKEDSTLMGFSVSSSGIKSISSKTLKKNRELTTARGKGLLLAARKRRPSI 592 >gi|23580|lcl|protein:vir:102747 Length: 622 # NCBI annotation: terminase large subunit # Family: family:all:11211 # MgeID: mge:1610 # MgeName: YS40 # Cross-refs: genbank:acc:YP_874075;genbank:gi:118197682;genbank:GeneI D:4495939 Length = 622 Score = 64.3 bits (155), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 106/440 (24%), Positives = 172/440 (39%), Gaps = 70/440 (15%) Query: 91 MVLECGRRGGKSVLASICVLYEFYCLINLDNPAKHYGLLSGSPIAIFVIARSGAQVNETL 150 ++L G+ GGK + I + Y L+ + +P K++G+ S I +A S Q Sbjct: 83 IILWVGKGGGKDFITRIIFMRLVYRLLCMYSPHKYFGIPSSEIITFLNVAASADQATSVF 142 Query: 151 FGAIRGYASQSA--YFKGLVNSGQIEILTQEIRCQAKNIAIYAKHTNSQSLVGYSLKMLV 208 F ++ Y + F+ + +I + I KNI + + H+ S SL G ++ + V Sbjct: 143 FDPLKNYIRNAGPKAFRQFGFNPDTDIKEKHI-IFPKNIHLVSGHSESDSLEGKNILVAV 201 Query: 209 LDE--AARFEYNELGESKADDIWSNV-AKGLSTFGNKGKKIAISSA-WSEGD-YIQNLYK 263 DE A F + +W+ + + S F K K AIS +SE + IQ LYK Sbjct: 202 ADEIDAKSFR-------NPEKMWTMLRSSSRSRFNGKEKIFAISYMRYSESNGMIQKLYK 254 Query: 264 VATRDPRMVAFRLRTWDINLRPEVSEYSLKNSEDYIRDPVTAALEY--EGIRSSMHGSFF 321 P + TW+ N P ++ + + ++ ++PV A Y + F Sbjct: 255 EHLGLPHSFVAKYPTWEFNPNPMITRETF--ASEFEKNPVEAETIYACNPPEQPIDAWFT 312 Query: 322 QKEYIEEAVKG--LSCLDAHSIPLDITNGDDTRHYVSLQITRLERLS------------- 366 E ++ A+K L L P D N + + E++ Sbjct: 313 DLERLKNAMKPSELHPLKFPLPPEDFYNNPKLEAFTLKEDGSYEKIDPYNLEFKDWFYGK 372 Query: 367 EGRSYLHV-DYGLKK-----DSAAIAFVRSTKLEDGRWGVIVDGLLVWKPYSDRDNSGRG 420 EG Y+ V D GL + D+ AIA L + +G L+ +P D Sbjct: 373 EGVEYVLVADPGLGRVSTEGDAYAIA------LGHREFYYSKEGKLIPRPVVDL------ 420 Query: 421 IQRIVSYLDIEEKLVQICQAR------------HISLCSFDSYQSQSTIQRLHAHGIRSI 468 + R Y+ +E+ VQI +I+ FD Y S ST Q L R Sbjct: 421 VFRFTGYM-FDEEEVQINAVHNLIEKLIEERKFNITHTFFDIYNSASTAQWLKR---RYP 476 Query: 469 EMSTTNTAQLSY--YNLTRQ 486 M T ++Y Y L R+ Sbjct: 477 HMKVTYNKYVTYEHYALLRE 496 >gi|19608|lcl|protein:vir:4081 Length: 518 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:85 # MgeName: c2 # Cross-refs: genbank:acc:NP_043560;genbank:gi:9628694;genbank:GeneID: 1261154 Length = 518 Score = 38.5 bits (88), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/199 (20%), Positives = 74/199 (37%), Gaps = 48/199 (24%) Query: 32 IVEFAEQYLLAPGDRLF---PPQRAILRALYNEPLPEDELAILQRWAEQDVTTWVPDRSY 88 I +F E+++ P + F P +A+L +Y P DE ++ Sbjct: 40 IFDFIEEFMTLPNNERFKIIPYHKAVLTLMYCTPYQIDEFVVI----------------- 82 Query: 89 VNMVLECGRRGGKSVLASICVLYEFYCLINLDNPAKHYGLLSGSPIAIFVIARSGAQVNE 148 GR KS+L + L E + L I ++A Q + Sbjct: 83 ------VGRSNAKSILDVMIALIELF-------------LFPKPNSVIALMATKKDQAEK 123 Query: 149 TLFGAIRGYASQSAY----FKGLVNSGQIEILTQE---IRCQAKNIAIYAKHTNSQSLVG 201 L R + FK + +IL ++ ++ + I+IYA +N +L G Sbjct: 124 ILMKHFRAMGNCQGTIINKFKNQFKLNKEQILVKDNSILKSKGTEISIYA--SNEDTLDG 181 Query: 202 YSLKMLVLDEAARFEYNEL 220 +++++DE F+ N L Sbjct: 182 GREQLVIIDEFGAFKKNPL 200 >gi|13853|lcl|protein:vir:4826 Length: 625 # NCBI annotation: ORF22 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:105 # MgeName: 7201 # Cross-refs: genbank:acc:NP_038323;genbank:gi:9634649;genbank:GeneID: 1262609 Length = 625 Score = 36.2 bits (82), Expect = 0.001, Method: Compositional matrix adjust. Identities = 77/361 (21%), Positives = 142/361 (39%), Gaps = 45/361 (12%) Query: 88 YVNMVLECGRRGGKSVLASICVLYEFYCLINLDNPAKHYGLLSGSPIAIFVIARSGAQVN 147 + N+++ R GK+++A IC+ + + I G F+++ Sbjct: 123 FSNIIISIARSQGKTMIAGICLNFSYLIEI------------IGQSNQDFLVSSLTFDQT 170 Query: 148 ETLFGAIRGYAS---QSAYFKGLVNSGQIEILTQEIRCQAKNIAIYAKHTNSQSLVGYSL 204 LF ++ + ++ FK L Q+++ ++EI+ I S Sbjct: 171 MKLFTYVKSMMARIIENEPFKSLAEETQLQLYSREIKSLLDANTINTISFESGKFDSKHF 230 Query: 205 KMLVLDEAARFEYNELGESKADDIWSNVAKG-LSTFGNKGKKIAISSAWSEGDYIQ---N 260 K+ V D E+GE + D+ S + G ++T G++ +I+ S + + Q Sbjct: 231 KLAVAD--------EVGELRTDEGISKITSGQVNTEGSRFIEISTSYQTPDVPFHQEQKK 282 Query: 261 LYKVATRD-PRMVAFRL-RTW-DINLRPEVSEYSLKNSEDYIRDPVTAALEYEGIRSSMH 317 L ++ RD R +L W NL + S + P +G+ S Sbjct: 283 LIEIMERDFDRSGDDQLCLIWSQDNLEEVFKPETWAKSNPLLNHPELKEGLMKGLLSERD 342 Query: 318 GSFFQKEYIEEAVKGLSCL---DAHSIPLDITNGDDTRHYVSLQITRLERLSEGRSYLHV 374 + + VK ++C D++S LD+T D + V + + R Y+ + Sbjct: 343 KKLLMGKLADFQVKNMNCWLLADSNSF-LDLT---DIENAVIPEFD----IRGKRVYVGL 394 Query: 375 DYGLKKDSAAIAFVRSTKLEDG--RWGVIVDGLLVWKPYSDRDNSGRGIQRIVSYLDIEE 432 D + D+ AI FV EDG +W V + W+ + + Q V+Y D+EE Sbjct: 395 DASMFSDNTAIGFVYPYLGEDGSQKWHVEQHSFIPWQQAGSLE--AKMEQDGVNYRDLEE 452 Query: 433 K 433 K Sbjct: 453 K 453 >gi|26227|lcl|protein:vir:7745 Length: 738 # NCBI annotation: gp239 # Family: family:all:11526 # MgeID: mge:148 # MgeName: Bxz1 # Cross-refs: genbank:acc:NP_818289;genbank:gi:29566722;genbank:GeneID :1259826 Length = 738 Score = 32.7 bits (73), Expect = 0.012, Method: Compositional matrix adjust. Identities = 43/170 (25%), Positives = 66/170 (38%), Gaps = 37/170 (21%) Query: 1 MARKRKLD------PIELFDELVYEGLAQVKTNHVIGIVEFAEQYLLAPGDRLFPPQRAI 54 MA KR D P++ F E V G IV+F G L+P Q + Sbjct: 1 MAPKRDDDNLPNFRPLDSFREAVRNGRPW------DSIVDFVVHPSFC-GRMLYPRQMTL 53 Query: 55 LRALY--NEPLPEDELAILQRWAEQ--------DVTTWVPDR------------SYVNMV 92 L+ +Y E + + +L ++ WA+ V + DR ++ MV Sbjct: 54 LKLIYLETETMTDYDLTVIGEWADGFKNRAQPIGVQPDIMDRVKLLKSLGYTHFPHIQMV 113 Query: 93 LECGRRGGKSVLASICVLYEFYCLINLDNPAKHYGLLSGSPIAIFVIARS 142 L GRR K ++ I L +L + +HY + G I V+A S Sbjct: 114 L--GRRASKGIMGGIVTTERIAYLYSLGSWQQHYNQVPGQVAEIQVVAPS 161 Score = 31.2 bits (69), Expect = 0.034, Method: Compositional matrix adjust. Identities = 46/194 (23%), Positives = 77/194 (39%), Gaps = 36/194 (18%) Query: 400 VIVDGLLVWKPYSDRDNSGRGIQRIVSYLDIEEKLVQ-ICQARHISLCSFDSYQSQSTI- 457 VI+D L VWKP D++ + Y+ + E+L + + I S+D + S I Sbjct: 487 VIIDVLKVWKPEDFPDHT-------LDYVQVTEELDNYLTRFPTIEKMSYDQFNSAGLIS 539 Query: 458 -QRLHAHGIRSIEMSTTNTAQLSYYNLTRQLLNEGRLILPRDSTWTHSL---MAEMGGIL 513 Q+ IR ++ + T + + LN G W HS AE G L Sbjct: 540 HQKRKFSNIRILQQTFTEQQNQDRFEKFKSALNLG---------WVHSWKDDFAEDGQSL 590 Query: 514 ----------QLANGKITHNERASG----KDIIDAVVNAVFNCVKEDSTLMGFSVSSSGI 559 +++ KI +++ G KD+ D V+ V + + S+S Sbjct: 591 LELELKFLQEKVSGSKIKVDKQDIGPVQTKDLADCVMVVVTDLLHASLDRWYASLSKMSG 650 Query: 560 KSISSKTLKKNREL 573 S ++ LK RE+ Sbjct: 651 GSTNAAGLKSGREM 664 >gi|22566|lcl|protein:vir:107279 Length: 1007 # NCBI annotation: gp242 # Family: family:all:11526 # MgeID: mge:1550 # MgeName: Catera # Cross-refs: genbank:acc:YP_656220;genbank:gi:109393421;genbank:GeneI D:4156748 Length = 1007 Score = 32.3 bits (72), Expect = 0.014, Method: Compositional matrix adjust. Identities = 43/170 (25%), Positives = 66/170 (38%), Gaps = 37/170 (21%) Query: 1 MARKRKLD------PIELFDELVYEGLAQVKTNHVIGIVEFAEQYLLAPGDRLFPPQRAI 54 MA KR D P++ F E V G IV+F G L+P Q + Sbjct: 1 MALKRDDDNLPNFRPLDSFREAVRNGRPWDS------IVDFVVHPSFC-GRMLYPRQMTL 53 Query: 55 LRALY--NEPLPEDELAILQRWAEQ--------DVTTWVPDR------------SYVNMV 92 L+ +Y E + + +L ++ WA+ V + DR ++ MV Sbjct: 54 LKLIYLETETMTDYDLTVIGEWADGFKNRAQPIGVQPDIMDRVKLLKSLGYTHFPHIQMV 113 Query: 93 LECGRRGGKSVLASICVLYEFYCLINLDNPAKHYGLLSGSPIAIFVIARS 142 L GRR K ++ I L +L + +HY + G I V+A S Sbjct: 114 L--GRRASKGIMGGIVTTERIAYLYSLGSWQQHYNQVPGQVAEIQVVAPS 161 Score = 29.3 bits (64), Expect = 0.13, Method: Compositional matrix adjust. Identities = 44/185 (23%), Positives = 78/185 (42%), Gaps = 18/185 (9%) Query: 400 VIVDGLLVWKPYSDRDNSGRGIQRIVSYLDIEEKL-VQICQARHISLCSFDSYQSQSTI- 457 VI+D L VWKP +++ + Y+ + E+L + + I S+D + S I Sbjct: 756 VIIDVLKVWKPQDFPEHT-------LDYVQVTEELDAYLTRFPTIEKMSYDQFNSAGLIS 808 Query: 458 -QRLHAHGIRSIEMSTTNTAQLSYYNLTRQLLNEGRLILPRD--STWTHSLMAEMGGILQ 514 Q+ IR ++ + T + + LN G + RD + SL+ LQ Sbjct: 809 HQKRKFTNIRILQQTFTEQQNQDRFEKFKSALNLGWVHCYRDDFAEDGQSLLELELKFLQ 868 Query: 515 --LANGKITHNERASG----KDIIDAVVNAVFNCVKEDSTLMGFSVSSSGIKSISSKTLK 568 ++ KI +++ G KD+ D V+ V + + S+S S ++ LK Sbjct: 869 EKISGSKIKVDKQDIGPVQTKDLADCVMVVVTDLLHASLDRWYASLSKMSGGSTNAAGLK 928 Query: 569 KNREL 573 RE+ Sbjct: 929 SGREM 933 >gi|15101|lcl|protein:vir:3867 Length: 563 # NCBI annotation: putative large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:82 # MgeName: A2 # Cross-refs: genbank:acc:NP_680484;swissprot:trembl:q8ltc3;genbank:gi :22296524;interpro:IPR005021;uniprot:Q8LTC3;genbank:Gene ID:951698 Length = 563 Score = 32.0 bits (71), Expect = 0.022, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 11/90 (12%) Query: 48 FPPQRAILRALYNEPLPEDE------LAILQRWAEQDVTTWVPD-----RSYVNMVLECG 96 + P A + E LPE + LA Q++ + WV R + ++ + Sbjct: 39 YDPNLAGKAVKFMEILPEPKSGKPQPLAPFQKFIIGSIYGWVDKDDSNIRRFTDVFISMA 98 Query: 97 RRGGKSVLASICVLYEFYCLINLDNPAKHY 126 R+ GKS+L S +LYEF N N + Y Sbjct: 99 RKNGKSLLISGVILYEFLFGKNPANKRQLY 128 Score = 24.6 bits (52), Expect = 3.4, Method: Compositional matrix adjust. Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%) Query: 507 AEMGGILQLANG--KITHNERASGKDIIDAVVNAVFNCVKED 546 A M +L N +I N+ A+ D+IDA ++A KED Sbjct: 505 AAMNAVLMSDNNGVRINKNKYANKIDMIDATLDAYAIAFKED 546 >gi|17207|lcl|protein:vir:7405 Length: 646 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:146 # MgeName: P335 # Cross-refs: genbank:acc:NP_839922;genbank:gi:30089892;genbank:GeneID :1260673 Length = 646 Score = 29.3 bits (64), Expect = 0.14, Method: Compositional matrix adjust. Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%) Query: 369 RSYLHVDYGLKKDSAAIAFVRSTKLEDG--RWGV 400 R Y+ VDY + D+ A+AFV E+G +W V Sbjct: 397 RCYVGVDYSMSSDNTAVAFVYPYVSEEGQAKWHV 430 >gi|14802|lcl|protein:vir:1021 Length: 660 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:20 # MgeName: bIL286 # Cross-refs: genbank:acc:NP_076675;genbank:gi:13095784;genbank:GeneID :920366 Length = 660 Score = 27.3 bits (59), Expect = 0.51, Method: Compositional matrix adjust. Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%) Query: 369 RSYLHVDYGLKKDSAAIAFVRSTKLEDG--RWGV 400 R Y+ +DY + D+ AIAFV ++G +W V Sbjct: 411 RCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHV 444 >gi|14114|lcl|protein:vir:3986 Length: 657 # NCBI annotation: putative large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:319 # MgeName: BK5-T # Cross-refs: genbank:acc:NP_116494;genbank:gi:14251127;genbank:GeneID :921256 Length = 657 Score = 27.3 bits (59), Expect = 0.53, Method: Compositional matrix adjust. Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%) Query: 369 RSYLHVDYGLKKDSAAIAFVRSTKLEDG--RWGV 400 R Y+ +DY + D+ AIAFV ++G +W V Sbjct: 408 RCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHV 441 >gi|7243|lcl|protein:vir:103223 Length: 168 # NCBI annotation: putative phage relative terminase # Family: family:all:144 # MgeID: mge:1605 # MgeName: JK06 # Cross-refs: genbank:acc:YP_277476;genbank:gi:71834119;genbank:GeneID :3562334 Length = 168 Score = 26.6 bits (57), Expect = 0.79, Method: Compositional matrix adjust. Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 9/75 (12%) Query: 468 IEMSTTNTAQLSYYNLTRQLLNEGRLILPRDSTWTHSLMAEMGGILQLANGKITHNERAS 527 IE +T +L+ + G ++LP + W SL+ E T ++ Sbjct: 84 IEPFVPDTDKLTRVMSALPQIKAGNVVLPDSAPWLTSLLTEFSA--------FTADDSHP 135 Query: 528 GKDIIDAVVNAVFNC 542 DI+D A+ NC Sbjct: 136 HDDIVDTTTMAI-NC 149 >gi|15547|lcl|protein:vir:856 Length: 540 # NCBI annotation: putative terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:18 # MgeName: bIL170 # Cross-refs: genbank:acc:NP_047115;genbank:gi:9630568;genbank:GeneID: 1261755 Length = 540 Score = 26.2 bits (56), Expect = 1.0, Method: Compositional matrix adjust. Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 5/44 (11%) Query: 350 DTRHYVSLQITRLERLS-----EGRSYLHVDYGLKKDSAAIAFV 388 DT +Y + Q T+L + + R+Y+ +D L D A++FV Sbjct: 322 DTAYYFTPQDTKLTEFNLSVFNKNRTYVGIDLSLIGDLTAVSFV 365 >gi|16631|lcl|protein:vir:9699 Length: 584 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:174 # MgeName: 315.2 # Cross-refs: genbank:acc:NP_795461;genbank:gi:28876230;genbank:GeneID :1257775 Length = 584 Score = 26.2 bits (56), Expect = 1.1, Method: Compositional matrix adjust. Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 8/58 (13%) Query: 61 EPLPEDELAILQRWAEQDVTTWVPD-----RSYVNMVLECGRRGGKSVLASICVLYEF 113 +P P LA+ Q++ ++ W R + ++ R+ GK++L + +LYEF Sbjct: 81 KPYP---LAMFQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGKTILIAGILLYEF 135 >gi|4336|lcl|protein:vir:94893 Length: 540 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1532 # MgeName: P008 # Cross-refs: genbank:acc:YP_762513;genbank:gi:115304212;genbank:GeneI D:5141206 Length = 540 Score = 26.2 bits (56), Expect = 1.3, Method: Compositional matrix adjust. Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 5/44 (11%) Query: 350 DTRHYVSLQITRLERLS-----EGRSYLHVDYGLKKDSAAIAFV 388 DT +Y + Q T+L + + R+Y+ +D L D A++FV Sbjct: 322 DTAYYFTPQDTKLTDFNLSVFNKNRTYVGIDLSLIGDLTAVSFV 365 >gi|1848|lcl|protein:vir:93873 Length: 540 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1479 # MgeName: 712 # Cross-refs: genbank:acc:YP_764262;genbank:gi:115315575;genbank:GeneI D:5141567 Length = 540 Score = 25.8 bits (55), Expect = 1.3, Method: Compositional matrix adjust. Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 5/44 (11%) Query: 350 DTRHYVSLQITRLERLS-----EGRSYLHVDYGLKKDSAAIAFV 388 DT +Y + Q T+L + + R+Y+ +D L D A++FV Sbjct: 322 DTAYYFTPQDTKLTDFNLSVFNKNRTYVGIDLSLIGDLTAVSFV 365 >gi|2310|lcl|protein:vir:93989 Length: 540 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1487 # MgeName: jj50 # Cross-refs: genbank:acc:YP_764316;genbank:gi:115315630;genbank:GeneI D:5176576 Length = 540 Score = 25.8 bits (55), Expect = 1.3, Method: Compositional matrix adjust. Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 5/44 (11%) Query: 350 DTRHYVSLQITRLERLS-----EGRSYLHVDYGLKKDSAAIAFV 388 DT +Y + Q T+L + + R+Y+ +D L D A++FV Sbjct: 322 DTAYYFTPQDTKLTDFNLSVFNKNRTYVGIDLSLIGDLTAVSFV 365 >gi|19080|lcl|protein:vir:1659 Length: 540 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:34 # MgeName: sk1 # Cross-refs: genbank:acc:NP_044948;genbank:gi:9629655;genbank:GeneID: 1261297 Length = 540 Score = 25.8 bits (55), Expect = 1.3, Method: Compositional matrix adjust. Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 5/44 (11%) Query: 350 DTRHYVSLQITRLERLS-----EGRSYLHVDYGLKKDSAAIAFV 388 DT +Y + Q T+L + + R+Y+ +D L D A++FV Sbjct: 322 DTAYYFTPQDTKLTDFNLSVFNKNRTYVGIDLSLIGDLTAVSFV 365 >gi|15774|lcl|protein:vir:6239 Length: 527 # NCBI annotation: gp33 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:131 # MgeName: phi-BT1 # Cross-refs: genbank:acc:NP_813693;swissprot:trembl:q859c4;genbank:gi :29366753;interpro:IPR005021;uniprot:Q859C4;genbank:Gene ID:1258893 Length = 527 Score = 24.6 bits (52), Expect = 3.3, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 15/68 (22%) Query: 46 RLFPPQRAILRALYNEPLPEDELAILQRWAEQDVTTWVPDRSYVNMVLECGRRGGKSVLA 105 RL P QR +L Y L +D RW R + +V+ R+ GKS +A Sbjct: 51 RLLPWQRTLLIDAYE--LTQDTFG---RWR----------RKHRTVVVCVARKNGKSTIA 95 Query: 106 SICVLYEF 113 + +LY Sbjct: 96 AAIMLYHL 103 >gi|6559|lcl|protein:vir:104336 Length: 523 # NCBI annotation: putative terminase large subunit # Family: family:all:144 # MgeID: mge:1593 # MgeName: RTP # Cross-refs: genbank:acc:YP_398965;genbank:gi:81343949;genbank:GeneID :3778868 Length = 523 Score = 23.9 bits (50), Expect = 5.0, Method: Compositional matrix adjust. Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 5/54 (9%) Query: 488 LNEGRLILPRDSTWTHSLMAEMGGILQLANGKITHNERASGKDIIDAVVNAVFN 541 + G ++LP + W L+ E+ A+ H+++ D + +N V N Sbjct: 459 IKAGNVVLPESAPWLSGLLTEIAAF--TADDSHKHDDQI---DCLTMAINLVLN 507 >gi|19303|lcl|protein:vir:4792 Length: 149 # NCBI annotation: putative major tail shaft protein # Family: family:all:900 # MgeID: mge:104 # MgeName: MM1 # Cross-refs: genbank:acc:NP_150172;swissprot:trembl:q94m39;genbank:gi :15088783;uniprot:Q94M39;genbank:GeneID:956012 Length = 149 Score = 23.5 bits (49), Expect = 7.5, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 23/51 (45%) Query: 217 YNELGESKADDIWSNVAKGLSTFGNKGKKIAISSAWSEGDYIQNLYKVATR 267 YN E +D W +AK +S + + A+ +GD ++ V+ + Sbjct: 16 YNGGTEPSTEDTWLELAKWISDVSDDTDEKTDDQAYYDGDGVEETTVVSVK 66 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.318 0.134 0.389 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 253,239 Number of Sequences: 514 Number of extensions: 11315 Number of successful extensions: 80 Number of sequences better than 100.0: 21 Number of HSP's better than 100.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 9 Number of HSP's that attempted gapping in prelim test: 63 Number of HSP's gapped (non-prelim): 25 length of query: 592 length of database: 206,069 effective HSP length: 77 effective length of query: 515 effective length of database: 166,491 effective search space: 85742865 effective search space used: 85742865 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 40 (20.0 bits)