Query lcl|Aclame:protein:vir:98883|NCBI_annot:portal|genbank:acc:YP_164413;genbank:gi:56694903;genbank:GeneID:3197273 Match_columns 517 No_of_seqs 135 out of 209 Neff 8.3 Searched_HMMs 1612 Date Sun Dec 1 03:45:43 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_13 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_13_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:98883 Length: 517 100.0 4E-164 3E-167 916.1 59.8 517 1-517 1-517 (517) 2 protein:vir:4782 Length: 522 # 100.0 1E-150 6E-154 843.0 58.0 506 1-517 1-521 (522) 3 protein:vir:9815 Length: 500 # 100.0 4E-148 3E-151 828.4 58.9 497 1-515 1-500 (500) 4 protein:vir:3028 Length: 500 # 100.0 4E-148 3E-151 828.4 58.9 497 1-515 1-500 (500) 5 protein:vir:79703 Length: 505 100.0 4E-148 2E-151 828.7 57.7 493 1-516 1-505 (505) 6 protein:vir:1587 Length: 508 # 100.0 5E-147 3E-150 822.8 58.8 496 1-515 1-508 (508) 7 protein:vir:80959 Length: 499 100.0 9E-135 5E-138 755.5 56.9 493 3-517 1-499 (499) 8 protein:vir:38 Length: 496 # N 100.0 4E-126 3E-129 707.9 57.0 490 3-517 1-496 (496) 9 protein:vir:78907 Length: 518 100.0 2E-118 1E-121 665.5 53.4 490 1-514 1-518 (518) 10 protein:vir:5961 Length: 503 # 100.0 4.7E-57 2.9E-60 329.4 45.9 461 1-517 13-495 (503) 11 protein:vir:105461 Length: 470 100.0 2.1E-56 1.3E-59 325.8 43.0 447 2-517 1-470 (470) 12 protein:vir:96240 Length: 511 100.0 6.4E-54 4E-57 312.2 46.4 452 1-517 39-511 (511) 13 protein:vir:4898 Length: 502 # 100.0 1.6E-53 9.8E-57 310.1 47.9 457 1-517 11-491 (502) 14 protein:vir:2732 Length: 501 # 100.0 1.9E-53 1.2E-56 309.6 46.8 442 1-517 38-496 (501) 15 protein:vir:79043 Length: 479 100.0 2.2E-53 1.4E-56 309.3 46.4 444 1-517 18-478 (479) 16 protein:vir:99781 Length: 511 100.0 2.4E-53 1.5E-56 309.1 46.5 452 1-517 39-511 (511) 17 protein:vir:96494 Length: 501 100.0 3.5E-53 2.2E-56 308.1 47.3 442 1-517 38-499 (501) 18 protein:vir:96839 Length: 474 100.0 1.6E-53 1E-56 310.0 44.8 451 1-517 1-470 (474) 19 protein:vir:9922 Length: 489 # 100.0 5.5E-53 3.4E-56 307.1 46.4 450 1-517 13-483 (489) 20 protein:vir:78805 Length: 511 100.0 6.4E-53 4E-56 306.7 46.5 452 1-517 39-511 (511) 21 protein:vir:96366 Length: 511 100.0 6.4E-53 4E-56 306.7 46.5 452 1-517 39-511 (511) 22 protein:vir:96179 Length: 468 100.0 3.8E-53 2.3E-56 308.0 43.3 440 1-517 14-466 (468) 23 protein:vir:94546 Length: 506 100.0 8.4E-53 5.2E-56 306.1 43.8 462 1-517 1-504 (506) 24 protein:vir:106639 Length: 481 100.0 4E-52 2.5E-55 302.4 47.5 453 1-517 6-480 (481) 25 protein:vir:103951 Length: 511 100.0 3.5E-52 2.2E-55 302.7 46.5 452 1-517 39-511 (511) 26 protein:vir:95113 Length: 474 100.0 2.6E-52 1.6E-55 303.4 44.5 446 3-517 1-472 (474) 27 protein:vir:97171 Length: 512 100.0 1.6E-51 9.7E-55 299.1 45.9 452 1-517 31-512 (512) 28 protein:vir:9306 Length: 511 # 100.0 2.2E-51 1.3E-54 298.4 46.6 452 1-517 39-511 (511) 29 protein:vir:106571 Length: 499 100.0 1.5E-51 9.5E-55 299.2 45.2 451 1-517 1-485 (499) 30 protein:vir:94498 Length: 474 100.0 3.7E-52 2.3E-55 302.6 41.2 446 3-517 1-474 (474) 31 protein:vir:97447 Length: 474 100.0 3.7E-52 2.3E-55 302.6 41.2 446 3-517 1-474 (474) 32 protein:vir:99522 Length: 470 100.0 4.2E-51 2.6E-54 296.8 47.0 440 1-517 1-470 (470) 33 protein:vir:105292 Length: 478 100.0 7.6E-52 4.7E-55 300.8 42.7 447 1-517 1-469 (478) 34 protein:vir:107112 Length: 478 100.0 1.7E-51 1.1E-54 298.9 44.6 451 1-517 2-478 (478) 35 protein:vir:95806 Length: 440 100.0 1.1E-51 6.7E-55 300.0 42.0 432 25-517 1-440 (440) 36 protein:vir:3609 Length: 452 # 100.0 8.6E-51 5.3E-54 295.1 44.9 424 1-517 17-452 (452) 37 protein:vir:102950 Length: 471 100.0 4.8E-51 3E-54 296.4 43.5 440 1-517 1-469 (471) 38 protein:vir:3964 Length: 453 # 100.0 3.1E-50 1.9E-53 292.0 46.5 426 1-517 1-453 (453) 39 protein:vir:78083 Length: 537 100.0 9.2E-50 5.7E-53 289.4 46.8 460 1-517 8-517 (537) 40 protein:vir:1236 Length: 483 # 100.0 4.5E-50 2.8E-53 291.1 44.3 432 1-517 34-481 (483) 41 protein:vir:93747 Length: 472 100.0 5.9E-50 3.7E-53 290.5 44.4 449 1-517 5-470 (472) 42 protein:vir:96266 Length: 474 100.0 4.8E-50 3E-53 291.0 43.9 445 3-517 1-474 (474) 43 protein:vir:95899 Length: 474 100.0 4.8E-50 3E-53 291.0 43.9 445 3-517 1-474 (474) 44 protein:vir:9871 Length: 429 # 100.0 3.2E-50 2E-53 291.9 40.1 424 18-517 1-429 (429) 45 protein:vir:94805 Length: 492 100.0 1.5E-49 9.5E-53 288.2 43.7 454 1-517 4-492 (492) 46 protein:vir:733 Length: 453 # 100.0 9.5E-50 5.9E-53 289.3 42.6 440 1-517 1-449 (453) 47 protein:vir:94101 Length: 474 100.0 2.4E-49 1.5E-52 287.1 44.5 451 1-517 1-469 (474) 48 protein:vir:105889 Length: 474 100.0 2.4E-49 1.5E-52 287.1 44.5 451 1-517 1-469 (474) 49 protein:vir:97336 Length: 492 100.0 3.4E-49 2.1E-52 286.3 43.4 454 1-517 4-492 (492) 50 protein:vir:102330 Length: 451 100.0 4.1E-48 2.5E-51 280.4 41.2 428 18-515 1-451 (451) 51 protein:vir:78537 Length: 480 100.0 1.7E-43 1.1E-46 255.0 44.2 442 1-517 1-466 (480) 52 protein:vir:78227 Length: 480 100.0 2.3E-43 1.4E-46 254.4 42.5 442 1-517 1-468 (480) 53 protein:vir:7768 Length: 484 # 100.0 3.9E-43 2.4E-46 253.1 43.4 434 1-517 14-481 (484) 54 protein:vir:80680 Length: 441 100.0 5E-43 3.1E-46 252.5 43.5 429 1-511 3-441 (441) 55 protein:vir:2427 Length: 485 # 100.0 6.9E-43 4.3E-46 251.7 42.4 443 14-517 1-476 (485) 56 protein:vir:2341 Length: 488 # 100.0 2.4E-42 1.5E-45 248.7 44.9 448 1-517 10-484 (488) 57 protein:vir:104082 Length: 485 100.0 1.3E-42 7.8E-46 250.3 42.3 442 1-517 8-484 (485) 58 protein:vir:4223 Length: 486 # 100.0 7.9E-42 4.9E-45 245.9 46.0 441 1-517 6-478 (486) 59 protein:vir:99072 Length: 479 100.0 1.5E-41 9.4E-45 244.4 41.6 431 3-517 1-460 (479) 60 protein:vir:7987 Length: 456 # 100.0 4.5E-42 2.8E-45 247.3 37.7 446 14-514 1-456 (456) 61 protein:vir:2500 Length: 501 # 100.0 7E-41 4.3E-44 240.7 43.1 454 1-517 22-486 (501) 62 protein:vir:102602 Length: 456 100.0 6.5E-41 4.1E-44 240.9 39.6 445 14-513 1-456 (456) 63 protein:vir:105819 Length: 456 100.0 6.5E-41 4.1E-44 240.9 39.6 445 14-513 1-456 (456) 64 protein:vir:98444 Length: 434 100.0 5.1E-39 3.2E-42 230.5 38.3 413 56-516 1-434 (434) 65 protein:vir:99916 Length: 504 100.0 3.5E-37 2.2E-40 220.4 42.7 449 14-517 1-488 (504) 66 protein:vir:9568 Length: 410 # 100.0 7.3E-34 4.6E-37 202.2 40.1 399 26-502 1-410 (410) 67 protein:vir:8184 Length: 474 # 100.0 5.6E-34 3.4E-37 202.9 38.0 450 1-515 10-474 (474) 68 protein:vir:9751 Length: 422 # 100.0 4.1E-34 2.5E-37 203.6 36.8 410 18-499 1-422 (422) 69 protein:vir:94742 Length: 409 100.0 6.6E-33 4.1E-36 197.0 35.6 396 1-484 3-409 (409) 70 protein:vir:1634 Length: 409 # 100.0 1.4E-32 8.9E-36 195.2 32.9 398 18-484 1-409 (409) 71 protein:vir:101494 Length: 527 100.0 1.1E-31 6.6E-35 190.4 37.0 480 14-517 1-517 (527) 72 protein:vir:102239 Length: 527 100.0 1.2E-31 7.6E-35 190.1 37.0 480 14-517 1-517 (527) 73 protein:vir:7430 Length: 563 # 100.0 2.4E-30 1.5E-33 183.0 37.8 483 14-517 1-535 (563) 74 protein:vir:94956 Length: 452 99.8 1.9E-17 1.2E-20 112.2 38.6 424 21-517 1-451 (452) 75 protein:vir:97265 Length: 513 99.7 3.6E-15 2.2E-18 99.8 37.9 435 18-517 1-491 (513) 76 protein:vir:95149 Length: 501 99.7 3.3E-14 2.1E-17 94.5 41.4 434 29-517 1-501 (501) 77 protein:vir:8846 Length: 705 # 99.6 4.5E-14 2.8E-17 93.8 33.4 466 1-517 10-595 (705) 78 protein:vir:93630 Length: 776 99.6 1.5E-13 9.5E-17 90.8 35.3 468 1-517 44-647 (776) 79 protein:vir:80453 Length: 535 99.5 1.9E-12 1.2E-15 84.9 39.5 442 1-517 32-532 (535) 80 protein:vir:80165 Length: 651 99.5 2.9E-12 1.8E-15 83.8 32.6 470 1-517 1-590 (651) 81 protein:vir:95014 Length: 491 99.4 2E-11 1.2E-14 79.3 37.9 439 14-516 1-491 (491) 82 protein:vir:78393 Length: 489 99.4 2.2E-11 1.3E-14 79.1 39.0 438 14-517 1-488 (489) 83 protein:vir:79538 Length: 502 99.4 2.4E-11 1.5E-14 78.8 40.1 435 1-517 1-502 (502) 84 protein:vir:96783 Length: 488 99.4 5.6E-11 3.5E-14 76.8 33.5 429 1-499 14-488 (488) 85 protein:vir:108295 Length: 711 99.4 2.2E-11 1.4E-14 79.0 30.5 474 1-517 29-651 (711) 86 protein:vir:80040 Length: 461 99.4 1E-11 6.5E-15 80.8 28.3 421 1-514 1-461 (461) 87 protein:vir:95542 Length: 548 99.3 7.9E-11 4.9E-14 76.0 38.9 441 1-517 1-515 (548) 88 protein:vir:95449 Length: 584 99.3 9.1E-12 5.7E-15 81.1 25.5 450 1-503 1-584 (584) 89 protein:vir:107742 Length: 537 99.3 1.3E-11 7.8E-15 80.4 24.9 437 1-517 25-525 (537) 90 protein:vir:95821 Length: 763 99.3 2.4E-10 1.5E-13 73.4 37.2 471 1-517 26-635 (763) 91 protein:vir:5249 Length: 437 # 99.3 5.4E-11 3.4E-14 76.9 27.5 406 1-517 1-437 (437) 92 protein:vir:104437 Length: 714 99.2 5.7E-10 3.6E-13 71.2 35.9 461 1-517 17-613 (714) 93 protein:vir:2764 Length: 714 # 99.2 7.3E-10 4.5E-13 70.7 35.2 471 1-517 6-613 (714) 94 protein:vir:817 Length: 714 # 99.2 7.3E-10 4.5E-13 70.7 35.2 471 1-517 6-613 (714) 95 protein:vir:3296 Length: 714 # 99.2 7.3E-10 4.5E-13 70.7 35.2 471 1-517 6-613 (714) 96 protein:vir:10117 Length: 714 99.2 7.3E-10 4.5E-13 70.7 35.2 471 1-517 6-613 (714) 97 protein:vir:9950 Length: 714 # 99.2 7.3E-10 4.5E-13 70.7 35.2 471 1-517 6-613 (714) 98 protein:vir:79647 Length: 435 99.2 5.3E-11 3.3E-14 76.9 23.5 405 1-517 1-435 (435) 99 protein:vir:96738 Length: 505 99.2 9.1E-10 5.7E-13 70.1 35.0 438 1-516 8-505 (505) 100 protein:vir:105429 Length: 708 99.0 2.6E-09 1.6E-12 67.7 26.3 476 3-517 1-601 (708) 101 protein:vir:104338 Length: 422 99.0 2.1E-09 1.3E-12 68.1 25.7 392 1-515 1-422 (422) 102 protein:vir:105619 Length: 772 99.0 6.1E-09 3.8E-12 65.6 28.7 482 1-517 1-642 (772) 103 protein:vir:96068 Length: 765 99.0 4.2E-10 2.6E-13 72.0 20.8 445 1-517 37-537 (765) 104 protein:vir:105002 Length: 432 99.0 8.4E-09 5.2E-12 64.8 30.7 405 1-515 1-432 (432) 105 protein:vir:107605 Length: 432 99.0 8.4E-09 5.2E-12 64.8 30.7 405 1-515 1-432 (432) 106 protein:vir:102855 Length: 432 99.0 8.4E-09 5.2E-12 64.8 30.7 405 1-515 1-432 (432) 107 protein:vir:107662 Length: 427 99.0 1.8E-09 1.1E-12 68.5 23.0 395 1-517 1-423 (427) 108 protein:vir:102668 Length: 547 99.0 9.6E-09 5.9E-12 64.5 30.1 458 18-517 1-542 (547) 109 protein:vir:1538 Length: 535 # 99.0 9.6E-09 6E-12 64.5 33.4 460 3-517 1-523 (535) 110 protein:vir:94049 Length: 532 98.9 1.1E-08 6.7E-12 64.2 27.1 447 1-517 17-511 (532) 111 protein:vir:389 Length: 530 # 98.9 1.2E-08 7.3E-12 64.1 36.6 440 20-517 1-523 (530) 112 protein:vir:3361 Length: 535 # 98.9 1.2E-08 7.6E-12 63.9 33.6 459 3-517 1-522 (535) 113 protein:vir:3139 Length: 599 # 98.9 5.7E-09 3.5E-12 65.8 24.2 465 1-510 1-599 (599) 114 protein:vir:81152 Length: 411 98.9 2.1E-08 1.3E-11 62.6 29.0 393 1-516 1-411 (411) 115 protein:vir:63755 Length: 547 98.9 2.5E-08 1.5E-11 62.3 29.5 441 1-517 1-519 (547) 116 protein:vir:95315 Length: 559 98.8 3E-08 1.9E-11 61.8 31.8 479 3-517 1-557 (559) 117 protein:vir:99563 Length: 862 98.8 2.4E-08 1.5E-11 62.4 25.0 433 1-517 66-563 (862) 118 protein:vir:6240 Length: 457 # 98.8 3.2E-08 2E-11 61.7 25.9 412 1-517 1-449 (457) 119 protein:vir:3420 Length: 533 # 98.8 4.1E-08 2.5E-11 61.1 32.9 440 18-517 1-525 (533) 120 protein:vir:172 Length: 708 # 98.8 4.5E-08 2.8E-11 60.8 26.3 483 3-517 1-601 (708) 121 protein:vir:4454 Length: 414 # 98.8 5.1E-08 3.2E-11 60.5 27.4 392 1-517 1-411 (414) 122 protein:vir:94599 Length: 641 98.8 5.3E-08 3.3E-11 60.5 29.2 468 1-517 23-621 (641) 123 protein:vir:102080 Length: 429 98.8 5.4E-08 3.3E-11 60.4 27.4 403 1-515 1-429 (429) 124 protein:vir:1326 Length: 457 # 98.8 5.4E-08 3.4E-11 60.4 27.1 410 1-517 1-454 (457) 125 protein:vir:100039 Length: 522 98.7 9E-08 5.6E-11 59.2 30.9 446 1-516 1-522 (522) 126 protein:vir:81072 Length: 432 98.7 1E-07 6.4E-11 58.9 24.9 404 1-517 7-432 (432) 127 protein:vir:94572 Length: 535 98.7 1.1E-07 6.6E-11 58.8 31.4 458 1-517 1-521 (535) 128 protein:vir:1785 Length: 555 # 98.7 1.3E-07 8.1E-11 58.3 35.4 449 3-517 1-550 (555) 129 protein:vir:77597 Length: 725 98.6 1.5E-07 9.4E-11 58.0 31.9 465 1-517 1-590 (725) 130 protein:vir:7321 Length: 556 # 98.6 1.6E-07 9.7E-11 57.9 33.5 479 3-517 1-542 (556) 131 protein:vir:8883 Length: 543 # 98.6 1.8E-07 1.1E-10 57.5 27.2 466 14-517 1-536 (543) 132 protein:vir:10362 Length: 432 98.6 1.9E-07 1.2E-10 57.4 24.2 400 1-517 7-432 (432) 133 protein:vir:80644 Length: 551 98.6 2.2E-07 1.3E-10 57.1 30.7 441 1-517 5-523 (551) 134 protein:vir:94709 Length: 522 98.6 2.2E-07 1.4E-10 57.1 36.0 456 1-517 1-519 (522) 135 protein:vir:78696 Length: 542 98.5 3.3E-07 2.1E-10 56.1 38.9 467 3-517 1-541 (542) 136 protein:vir:10447 Length: 536 98.5 3.9E-07 2.4E-10 55.7 37.8 464 1-517 1-534 (536) 137 protein:vir:3520 Length: 720 # 98.5 5.5E-07 3.4E-10 54.9 30.8 474 3-517 1-601 (720) 138 protein:vir:6322 Length: 510 # 98.5 5.8E-07 3.6E-10 54.8 34.3 458 3-515 1-510 (510) 139 protein:vir:78942 Length: 510 98.4 6.7E-07 4.2E-10 54.4 34.0 449 3-515 1-510 (510) 140 protein:vir:2198 Length: 536 # 98.4 7E-07 4.3E-10 54.3 36.7 464 1-517 1-534 (536) 141 protein:vir:8418 Length: 409 # 98.4 7.1E-07 4.4E-10 54.3 25.5 392 1-516 1-409 (409) 142 protein:vir:103177 Length: 533 98.4 6.8E-07 4.2E-10 54.4 21.6 441 15-517 1-517 (533) 143 protein:vir:6382 Length: 553 # 98.4 8.9E-07 5.5E-10 53.8 37.8 451 1-517 2-551 (553) 144 protein:vir:97060 Length: 432 98.4 1E-06 6.2E-10 53.5 27.8 401 1-517 7-432 (432) 145 protein:vir:1380 Length: 422 # 98.4 1.1E-06 6.7E-10 53.3 27.9 403 1-516 1-422 (422) 146 protein:vir:3843 Length: 397 # 98.3 1.2E-06 7.6E-10 53.0 25.5 379 1-517 1-397 (397) 147 protein:vir:79772 Length: 648 98.3 1.7E-06 1.1E-09 52.2 30.1 439 1-517 8-495 (648) 148 protein:vir:104500 Length: 537 98.3 1.9E-06 1.2E-09 51.9 23.0 441 14-517 1-518 (537) 149 protein:vir:9263 Length: 725 # 98.3 2E-06 1.2E-09 51.9 32.1 463 1-517 5-590 (725) 150 protein:vir:7407 Length: 392 # 98.3 2E-06 1.3E-09 51.8 28.7 378 1-510 3-392 (392) 151 protein:vir:100920 Length: 725 98.2 2.2E-06 1.4E-09 51.6 29.4 463 1-517 1-590 (725) 152 protein:vir:10321 Length: 495 98.2 2.5E-06 1.5E-09 51.3 36.4 431 1-517 1-495 (495) 153 protein:vir:4952 Length: 386 # 98.2 3.3E-06 2E-09 50.7 28.6 371 1-517 1-385 (386) 154 protein:vir:107822 Length: 555 98.2 3.4E-06 2.1E-09 50.6 35.4 481 18-517 1-538 (555) 155 protein:vir:98506 Length: 555 98.2 3.4E-06 2.1E-09 50.6 35.4 481 18-517 1-538 (555) 156 protein:vir:107404 Length: 555 98.2 3.4E-06 2.1E-09 50.6 35.4 481 18-517 1-538 (555) 157 protein:vir:102727 Length: 945 98.1 3.6E-06 2.2E-09 50.4 25.1 419 1-517 60-528 (945) 158 protein:vir:95378 Length: 406 98.1 5.1E-06 3.1E-09 49.6 22.4 384 1-517 1-406 (406) 159 protein:vir:105520 Length: 706 98.0 6.1E-06 3.8E-09 49.2 30.2 477 3-517 1-601 (706) 160 protein:vir:103330 Length: 517 98.0 6.7E-06 4.2E-09 48.9 31.6 438 1-516 1-517 (517) 161 protein:vir:100150 Length: 437 98.0 7.1E-06 4.4E-09 48.8 27.9 406 1-517 1-436 (437) 162 protein:vir:345 Length: 663 # 98.0 8.6E-06 5.3E-09 48.4 20.4 458 1-517 1-589 (663) 163 protein:vir:102118 Length: 409 98.0 9.3E-06 5.7E-09 48.2 29.0 389 17-517 1-409 (409) 164 protein:vir:1023 Length: 392 # 97.8 1.5E-05 9.5E-09 47.0 27.5 377 1-510 3-392 (392) 165 protein:vir:3989 Length: 392 # 97.8 1.5E-05 9.5E-09 47.0 27.5 377 1-510 3-392 (392) 166 protein:vir:483 Length: 413 # 97.8 1.9E-05 1.2E-08 46.5 27.8 393 5-517 1-409 (413) 167 protein:vir:2683 Length: 412 # 97.8 2E-05 1.2E-08 46.4 25.0 390 1-517 1-407 (412) 168 protein:vir:99672 Length: 532 97.7 3E-05 1.8E-08 45.4 33.9 462 1-517 1-523 (532) 169 protein:vir:9359 Length: 348 # 97.7 3.2E-05 2E-08 45.2 24.1 331 50-517 1-343 (348) 170 protein:vir:1266 Length: 416 # 97.6 4.2E-05 2.6E-08 44.6 29.3 398 5-517 1-412 (416) 171 protein:vir:3153 Length: 467 # 97.6 4.4E-05 2.7E-08 44.5 33.5 397 66-517 1-441 (467) 172 protein:vir:189 Length: 424 # 97.5 5.2E-05 3.3E-08 44.1 28.7 393 1-515 14-424 (424) 173 protein:vir:103765 Length: 549 97.5 6.3E-05 3.9E-08 43.6 36.8 472 1-517 1-546 (549) 174 protein:vir:100249 Length: 431 97.4 7.6E-05 4.7E-08 43.2 24.8 399 1-513 1-431 (431) 175 protein:vir:81095 Length: 416 97.4 8.1E-05 5E-08 43.0 25.7 393 1-517 1-414 (416) 176 protein:vir:4598 Length: 416 # 97.4 8.1E-05 5E-08 43.0 25.7 393 1-517 1-414 (416) 177 protein:vir:1884 Length: 424 # 97.4 8.7E-05 5.4E-08 42.9 26.5 393 1-515 14-424 (424) 178 protein:vir:80796 Length: 574 97.3 9E-05 5.6E-08 42.8 32.2 441 1-517 9-525 (574) 179 protein:vir:100882 Length: 383 97.3 0.0001 6.3E-08 42.5 28.4 364 18-517 1-383 (383) 180 protein:vir:104892 Length: 558 97.3 0.00011 6.5E-08 42.4 20.4 432 14-517 1-537 (558) 181 protein:vir:105641 Length: 516 97.2 0.00012 7.6E-08 42.0 28.2 443 11-517 1-513 (516) 182 protein:vir:4828 Length: 382 # 97.2 0.00013 7.8E-08 42.0 26.2 363 1-517 1-378 (382) 183 protein:vir:960 Length: 413 # 97.2 0.00015 9.4E-08 41.5 23.8 389 1-517 1-412 (413) 184 protein:vir:100187 Length: 385 97.1 0.00018 1.1E-07 41.2 26.4 370 1-517 1-383 (385) 185 protein:vir:96980 Length: 409 97.0 0.00022 1.4E-07 40.6 26.8 389 1-517 4-404 (409) 186 protein:vir:94002 Length: 378 96.9 0.00025 1.6E-07 40.3 16.7 350 1-517 1-374 (378) 187 protein:vir:101541 Length: 694 96.9 0.00025 1.6E-07 40.3 19.2 418 1-517 66-539 (694) 188 protein:vir:3648 Length: 695 # 96.9 0.00025 1.6E-07 40.3 19.0 420 1-517 67-540 (695) 189 protein:vir:4337 Length: 434 # 96.9 0.00027 1.7E-07 40.1 27.7 410 3-517 1-434 (434) 190 protein:vir:78589 Length: 695 96.9 0.00027 1.7E-07 40.1 19.2 419 1-517 67-540 (695) 191 protein:vir:93867 Length: 378 96.9 0.00027 1.7E-07 40.1 17.2 348 1-517 1-374 (378) 192 protein:vir:104259 Length: 403 96.9 0.00029 1.8E-07 40.0 28.8 385 1-517 1-403 (403) 193 protein:vir:3868 Length: 417 # 96.9 0.00029 1.8E-07 40.0 24.5 381 18-517 1-415 (417) 194 protein:vir:7853 Length: 518 # 96.8 0.00032 2E-07 39.7 29.8 402 14-517 1-442 (518) 195 protein:vir:9408 Length: 441 # 96.8 0.00033 2.1E-07 39.7 24.7 403 8-517 1-439 (441) 196 protein:vir:79984 Length: 441 96.8 0.00033 2.1E-07 39.7 24.7 403 8-517 1-439 (441) 197 protein:vir:96988 Length: 516 96.8 0.00034 2.1E-07 39.6 28.0 439 14-511 1-516 (516) 198 protein:vir:101647 Length: 460 96.8 0.00034 2.1E-07 39.6 30.4 402 3-516 1-460 (460) 199 protein:vir:8100 Length: 466 # 96.8 0.00035 2.2E-07 39.5 26.7 423 1-517 1-463 (466) 200 protein:vir:106999 Length: 564 96.7 0.00038 2.4E-07 39.3 22.4 450 14-517 1-544 (564) 201 protein:vir:80134 Length: 403 96.7 0.0004 2.5E-07 39.2 21.9 372 1-517 1-403 (403) 202 protein:vir:7017 Length: 515 # 96.7 0.00042 2.6E-07 39.1 30.2 439 11-511 1-515 (515) 203 protein:vir:105064 Length: 421 96.7 0.00042 2.6E-07 39.1 26.8 394 1-517 1-414 (421) 204 protein:vir:101806 Length: 516 96.6 0.00045 2.8E-07 38.9 27.0 427 1-507 1-516 (516) 205 protein:vir:101189 Length: 516 96.6 0.00045 2.8E-07 38.9 27.0 427 1-507 1-516 (516) 206 protein:vir:93943 Length: 409 96.6 0.00048 3E-07 38.8 27.0 388 1-517 4-404 (409) 207 protein:vir:94426 Length: 409 96.6 0.00051 3.1E-07 38.6 25.8 388 1-517 4-404 (409) 208 protein:vir:106282 Length: 521 96.5 0.00056 3.5E-07 38.4 27.3 428 1-517 1-519 (521) 209 protein:vir:105782 Length: 449 96.5 0.00058 3.6E-07 38.3 25.0 423 3-517 1-446 (449) 210 protein:vir:4854 Length: 386 # 96.4 0.00062 3.9E-07 38.2 27.8 368 18-516 1-386 (386) 211 protein:vir:101648 Length: 518 96.3 0.00073 4.5E-07 37.8 29.0 400 14-517 1-442 (518) 212 protein:vir:4995 Length: 384 # 96.2 0.00092 5.7E-07 37.2 27.4 364 18-517 1-383 (384) 213 protein:vir:1661 Length: 378 # 96.0 0.0011 6.7E-07 36.9 17.3 368 1-517 1-374 (378) 214 protein:vir:100691 Length: 535 96.0 0.0011 7E-07 36.7 34.8 433 1-517 1-513 (535) 215 protein:vir:98396 Length: 441 95.8 0.0015 9.1E-07 36.1 25.4 371 46-517 1-439 (441) 216 protein:vir:1082 Length: 359 # 95.7 0.0016 9.7E-07 36.0 25.9 342 1-489 1-359 (359) 217 protein:vir:100598 Length: 516 95.4 0.0021 1.3E-06 35.3 28.6 448 1-507 1-516 (516) 218 protein:vir:80211 Length: 514 95.4 0.0021 1.3E-06 35.2 35.2 441 11-513 1-514 (514) 219 protein:vir:103219 Length: 201 95.3 0.0003 1.9E-07 39.9 7.9 186 269-517 1-201 (201) 220 protein:vir:6210 Length: 394 # 95.2 0.0025 1.6E-06 34.8 27.7 374 1-517 1-391 (394) 221 protein:vir:106716 Length: 698 95.0 0.0031 1.9E-06 34.4 19.4 418 1-517 67-541 (698) 222 protein:vir:4194 Length: 540 # 95.0 0.0031 1.9E-06 34.3 29.6 411 1-517 6-466 (540) 223 protein:vir:4156 Length: 542 # 94.8 0.0035 2.2E-06 34.1 29.6 413 3-517 1-467 (542) 224 protein:vir:9702 Length: 406 # 94.6 0.0039 2.4E-06 33.8 28.1 385 1-517 1-403 (406) 225 protein:vir:100650 Length: 395 94.5 0.0043 2.7E-06 33.5 21.9 365 18-517 1-390 (395) 226 protein:vir:9507 Length: 395 # 94.5 0.0043 2.7E-06 33.5 21.9 365 18-517 1-390 (395) 227 protein:vir:101289 Length: 395 94.5 0.0043 2.7E-06 33.5 21.9 365 18-517 1-390 (395) 228 protein:vir:99853 Length: 488 94.3 0.0047 2.9E-06 33.3 30.1 382 11-517 1-410 (488) 229 protein:vir:96579 Length: 576 94.2 0.005 3.1E-06 33.2 29.6 444 3-517 1-528 (576) 230 protein:vir:1431 Length: 419 # 94.2 0.0051 3.1E-06 33.2 27.8 391 17-517 1-413 (419) 231 protein:vir:5665 Length: 511 # 94.2 0.0052 3.2E-06 33.1 26.5 412 1-508 39-511 (511) 232 protein:vir:5737 Length: 419 # 94.0 0.0056 3.5E-06 32.9 26.4 389 18-517 1-412 (419) 233 protein:vir:107880 Length: 491 93.4 0.0078 4.8E-06 32.1 30.5 392 14-517 1-419 (491) 234 protein:vir:80333 Length: 419 93.2 0.0085 5.3E-06 31.9 25.5 389 17-517 1-413 (419) 235 protein:vir:4509 Length: 424 # 92.6 0.011 6.7E-06 31.4 27.0 392 14-517 1-424 (424) 236 protein:vir:81017 Length: 521 92.6 0.011 6.7E-06 31.4 31.1 433 1-513 2-521 (521) 237 protein:vir:108049 Length: 524 92.5 0.011 6.9E-06 31.3 28.1 428 1-517 1-522 (524) 238 protein:vir:93610 Length: 454 92.4 0.012 7.1E-06 31.2 30.6 402 3-517 1-435 (454) 239 protein:vir:78161 Length: 355 92.3 0.012 7.4E-06 31.1 21.8 298 163-517 1-322 (355) 240 protein:vir:99312 Length: 563 92.2 0.013 7.8E-06 31.0 27.6 437 7-517 1-525 (563) 241 protein:vir:95599 Length: 563 92.2 0.013 7.8E-06 31.0 27.6 437 7-517 1-525 (563) 242 protein:vir:8317 Length: 409 # 91.3 0.017 1E-05 30.3 21.9 368 14-516 1-409 (409) 243 protein:vir:6896 Length: 523 # 90.8 0.019 1.2E-05 30.0 27.4 431 1-517 1-521 (523) 244 protein:vir:94869 Length: 378 90.7 0.02 1.2E-05 29.9 19.4 363 1-517 1-374 (378) 245 protein:vir:1986 Length: 512 # 90.5 0.02 1.3E-05 29.9 27.6 410 1-517 1-439 (512) 246 protein:vir:7208 Length: 524 # 90.0 0.023 1.4E-05 29.6 25.4 428 1-517 40-522 (524) 247 protein:vir:99232 Length: 526 89.7 0.025 1.5E-05 29.4 29.6 404 1-517 1-448 (526) 248 protein:vir:103458 Length: 524 89.6 0.026 1.6E-05 29.3 25.5 428 1-517 40-522 (524) 249 protein:vir:79063 Length: 491 88.2 0.033 2.1E-05 28.7 29.5 398 1-517 3-419 (491) 250 protein:vir:103860 Length: 528 87.8 0.036 2.3E-05 28.5 29.1 406 1-517 1-450 (528) 251 protein:vir:79233 Length: 526 86.7 0.044 2.7E-05 28.0 31.0 411 1-517 1-448 (526) 252 protein:vir:858 Length: 378 # 86.2 0.047 2.9E-05 27.9 19.6 360 1-517 1-374 (378) 253 protein:vir:95965 Length: 385 85.2 0.055 3.4E-05 27.5 20.9 366 1-517 1-385 (385) 254 protein:vir:6596 Length: 521 # 84.8 0.057 3.6E-05 27.4 30.9 423 1-517 46-519 (521) 255 protein:vir:78641 Length: 278 80.2 0.097 6E-05 26.1 21.5 273 50-449 1-278 (278) 256 protein:vir:108215 Length: 469 76.4 0.14 8.4E-05 25.3 29.1 406 1-517 14-453 (469) 257 protein:vir:81218 Length: 423 70.9 0.2 0.00013 24.4 30.5 395 1-517 1-421 (423) 258 protein:vir:98265 Length: 524 69.7 0.22 0.00014 24.2 30.1 430 1-517 1-522 (524) 259 protein:vir:99452 Length: 651 69.6 0.22 0.00014 24.2 26.7 439 1-517 46-539 (651) 260 protein:vir:5839 Length: 533 # 68.1 0.24 0.00015 24.0 27.4 401 1-517 20-492 (533) 261 protein:vir:4089 Length: 395 # 65.7 0.28 0.00017 23.6 23.2 372 1-517 1-392 (395) 262 protein:vir:9641 Length: 395 # 54.8 0.49 0.00031 22.3 21.8 371 1-517 1-394 (395) 263 protein:vir:98853 Length: 219 51.1 0.59 0.00037 21.8 12.9 207 183-453 1-219 (219) 264 protein:vir:95254 Length: 488 35.2 1.2 0.00077 20.1 29.6 431 20-517 1-487 (488) 265 protein:vir:98643 Length: 395 33.7 1.3 0.00083 19.9 21.8 366 18-517 1-392 (395) No 1 >protein:vir:98883 Length: 517 # NCBI annotation: portal # Family: family:all:898 # MgeID: mge:1568 # MgeName: BCJA1c # Cross-refs: genbank:acc:YP_164413;genbank:gi:56694903;genbank:GeneID:3197273 Probab=100.00 E-value=4.5e-164 Score=916.13 Aligned_cols=517 Identities=100% Similarity=1.462 Sum_probs=506.4 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccChHHHHH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLRKLSA 80 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~~~i~ 80 (517) |+||++||+|||||++.+.+++++.+++|++|++|++|++||.+|++||+|+++|++++++++..++++++|+|+|++|| T Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~I~~w~~~Y~g~~~~~~~~~~~~~~~~~~~~sl~~~~~i~ 80 (517) T protein:vir:98 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLRKLSA 80 (517) T ss_pred CchHHHHHHHHHHHHHHhcccchhHhhcCCceecCHHHHHHHHHHHHHhcCCCcccccccccccccccceeecCcHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeCCeeEEEEEcC Q lcl|Aclame:pro 81 DVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDNGEIEFSWALA 160 (517) Q Consensus 81 ~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~g~~~i~~v~a 160 (517) +++|+|||+|+|+|++++.+..+..+...+.+|++|++++++|+|..+++++++.|+++|+++||||||+++++|++|+| T Consensus 81 ~~~A~Ll~~e~~~i~v~d~~~~~~~~~~~~~~~e~l~~i~~~n~f~~~~~~~~e~a~a~G~~a~k~~~d~~~~~I~~v~a 160 (517) T protein:vir:98 81 DVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDNGEIEFSWALA 160 (517) T ss_pred HHhhhhhcCCcceEEecccccccccccchhHHHHHHHHHHHhccHHHHHHHHHHHHhhhCCEEEEEEEeCCeeEEEEEcC Confidence 99999999999999999998888888888899999999999999999999999999999999999999999999999999 Q ss_pred CeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccccCCCC Q lcl|Aclame:pro 161 NAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEGMQ 240 (517) Q Consensus 161 ~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~ 240 (517) ++|+|+.++++++++|||++++.+..+++.+|||+||+|+|+++.+.+|+|+|+|+||++++.+.+|.+|||+++|++|+ T Consensus 161 d~~~Pl~~~~~~v~~~ai~~~~~~~~~~~~~~Yt~lE~H~~~~~~~~~~~y~I~n~ly~s~~~~~lG~~v~L~~~~e~l~ 240 (517) T protein:vir:98 161 NAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEGMQ 240 (517) T ss_pred CeeEEEEecCCCeEEEEEEEEEEEeecCCceEEEEEEEEecCceeccCCcEEEEEEEEecCCCccccccccccccccCCC Confidence 99999999999999999999999989889999999999999999999999999999999999999999999999999999 Q ss_pred cceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeecchHHhccCCCCcccc Q lcl|Aclame:pro 241 EKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRTVFVSDVMLRTVPDESGMP 320 (517) Q Consensus 241 ~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~l~~~~~~~~~~ 320 (517) ++++++|+++|+|+||+||.+|+++.+||+|+|+|++++++||+||++||+|+|+|++|+++|+||++||+.+++++|.. T Consensus 241 ~~~~~~g~~~Plf~y~~~p~~N~~~~~splG~S~~~~a~~~~d~lD~~~s~~~~e~~~g~~~i~vp~~~l~~~~~~~g~~ 320 (517) T protein:vir:98 241 EKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRTVFVSDVMLRTVPDESGMP 320 (517) T ss_pred cceeECCCCcceEEEecCCcccccccCCCCCCchhhhhHHHHHHHHHHHHHHHHHHHhCCcceecChhhhccccCCCCcc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998 Q ss_pred cCccCCcccceeeeecCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHHHHHHHHHHH Q lcl|Aclame:pro 321 PPQVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVSENDLTYR 400 (517) Q Consensus 321 ~~~~fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a~~~~~~~ 400 (517) ++.+||.++++|+.+++++++++++++||+||+++|+++++.+|++|+++||||+++||+++.+.+|||||++++++|++ T Consensus 321 ~~~~~d~~~~~y~~~~~~~~~~~i~~~~~~iR~e~~~~~~~~~L~~i~~~~Gls~~t~~~~~~~~kTATEi~s~~~~~~~ 400 (517) T protein:vir:98 321 PPQVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVSENDLTYR 400 (517) T ss_pred cCCCCCcccceeeeccCCCCCCceeeeccccchHHHHHHHHHHHHHHHHHhCCCcccccccccccccHHHHHHHHHHHHH Confidence 88999999999999999888899999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCCHHHHHHhhCCC Q lcl|Aclame:pro 401 TRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTVEAIQRIFKV 480 (517) Q Consensus 401 t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~~~l~~~~~~ 480 (517) |+++|++.|+.+|++|+++|++|+++++++++..++.++|+|+|+|++++|++++++++++++++|+||+++||+++||+ T Consensus 401 t~~~~~~~~~~aL~~lv~~i~~l~~~~~~~~~~~~~~~~v~v~f~D~i~~D~~~~~~~~~~~v~aG~ms~~~~i~~~~g~ 480 (517) T protein:vir:98 401 TRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTVEAIQRIFKV 480 (517) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcceEEEcCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHhCCC Confidence 99999999999999999999999999999999988899999999999999999999999999999999999999999999 Q ss_pred CHHHHHHHHHHHHHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 481 PKKTAEQWLEEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 481 ~eeea~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) ||+||++|++||++|+++++|.++.+..+.++.|||| T Consensus 481 ~eeeA~~e~~~i~~E~~~~~~~~~~~~~~~~~~gd~e 517 (517) T protein:vir:98 481 PKKTAEQWLEEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) T ss_pred ChHHHHHHHHHHHHhccccCCCCccccccCCCCCCCC Confidence 9999999999999999999999999999999999999 No 2 >protein:vir:4782 Length: 522 # NCBI annotation: putative minor capsid protein 1 # Family: family:all:898 # MgeID: mge:104 # MgeName: MM1 # Cross-refs: genbank:acc:NP_150162;swissprot:trembl:q94m49;genbank:gi:26553451;uniprot:Q94M49;genbank:GeneID:955983 Probab=100.00 E-value=9.6e-151 Score=843.03 Aligned_cols=506 Identities=38% Similarity=0.661 Sum_probs=474.2 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccChHHHHH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLRKLSA 80 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~~~i~ 80 (517) ||||++||+|||||++.+..+++..|++|++|+++++|+.+|.+|++||+|+++++++++..+...++++.|+|+|+.|| T Consensus 1 m~~~~~~k~~~~k~~~~~~~~~~~~i~~~~~i~~~~~~~~~i~~~~~~y~g~~~~~~~~~~~~~~~~~~~~slnl~~~i~ 80 (522) T protein:vir:47 1 MSLFQKVKDFFSRGRYYMQTSNLNSILEHPKIAVTQEEYDRIKRNLVYYQSKWDDVQYKNTDGDIKSRPMNHLPIARTAS 80 (522) T ss_pred CchHHHHHHHHHHHHHHhhcccchhccccCCCCCCHHHHHHHHHHHHHhcCCcccccccccCcchhcccceecchHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeCCeeEEEEEcC Q lcl|Aclame:pro 81 DVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDNGEIEFSWALA 160 (517) Q Consensus 81 ~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~g~~~i~~v~a 160 (517) +++|+|||+|+|+|++++ +.++++|++++++|+|..++.++++.|+++|++|||||||+++++|++|+| T Consensus 81 ~~~A~lv~~e~~~i~v~d-----------~~~~~~l~~~l~~n~f~~~~~~~~e~a~a~G~~a~k~~~d~~~~~i~~v~a 149 (522) T protein:vir:47 81 KKIASLVYNEQATITTKN-----------EILQKFLDDMLTNDRFNKNFERYLESCLALGGLAMRPYIDGDKVRVAFIQA 149 (522) T ss_pred HHHhhhhcCCcceeecCC-----------hHHHHHHHHHHhhcchHHHHHHHHHHhhccCCEEEEEEEcCCceEEEEEcC Confidence 999999999999999976 357899999999999999999999999999999999999999999999999 Q ss_pred CeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeeccee-------eccceEEEEEEEeecCCccccCcccccc Q lcl|Aclame:pro 161 NAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTE-------EGESLYVITNELYKSDNEGEIGKRIPLE 233 (517) Q Consensus 161 ~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~-------~~~~~y~I~n~ly~~~~~~~lG~~v~l~ 233 (517) ++|+|++++++++++|||++++....+++.+|||+||+|+|.... ...+.|+|+|+||++.+.+++|.+|||+ T Consensus 150 d~~~P~~~~~~~~~e~a~~~~~~~~~~~~~~~yt~lE~he~~~~~~~~~~~~~~~~~~~I~n~ly~~~~~~~lG~~v~l~ 229 (522) T protein:vir:47 150 PVFFPLESNTQDVSSAAILTKTIKSEGRKNVYYTLVEFHEWVTADGQETGSTNDKKYYRITNELYRSDVNDVLGQRVNLS 229 (522) T ss_pred CceEEEEEcCCceEEEEEEEEEEeecccceeEEEEEEEeeecccccccccccccCCceEEEEEEeecCCCcccCcccccc Confidence 999999999999999999999888888888999999999986542 2235799999999999999999999999 Q ss_pred cc--cCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeecchHHhc Q lcl|Aclame:pro 234 EL--YEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRTVFVSDVMLR 311 (517) Q Consensus 234 ~~--~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~l~ 311 (517) ++ |++|+++++++|+++|+|+|||||++|+++.+||||+|+|++++++||+||++||+|+|++++|+.+|+||++||+ T Consensus 230 ~~~e~~~l~~~~~~~~~~~Plf~y~~~~~~N~~~~~splG~S~~~~~~~~id~lD~~~s~~~~e~~~g~~~i~v~~~~l~ 309 (522) T protein:vir:47 230 ELDKYKNLEPVTVFENLSRPLFTYLKTPGMNNKDINSPLGLSIFDNAKTTIDFINRSYDEFMWEVRMGQRRVIVPEHLTQ 309 (522) T ss_pred ccccccCCCCceEeCCCCcceEEEecCCcccccccCCCcCCchhhhhHHHHHHHHHHHHHHHHHHHhccceeecchHHhc Confidence 98 7899999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cCCCCccc--ccCccCCcccceeeeecCC-CCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchH Q lcl|Aclame:pro 312 TVPDESGM--PPPQVFDPDVNVYKSIRMG-TDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTA 388 (517) Q Consensus 312 ~~~~~~~~--~~~~~fd~~~~~y~~~~~~-~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TA 388 (517) +.++++++ ..++.|+.++++|++++++ +++.+++++||+||+++|.++++.++++|+++||||+++||+++++.+|| T Consensus 310 ~~~~~~~g~~~~~~~fd~~~~~f~~~~~~~~~~~~i~~~~~~ir~e~~~~~~~~~l~~i~~~~gls~~tf~~~~~~~kTA 389 (522) T protein:vir:47 310 RQYQRPDGTIDFRPRFDVEQNVYMQIGGSSMDAGGITDLTSPIRANDYILAISEGLKLFEMQIGVSSGMFTFDGQGMKTA 389 (522) T ss_pred cCCCCCCcccccccccCcccceEeecCCCCCCCCcceeeccccChHHHHHHHHHHHHHHHHHhCCCccccCccccccccH Confidence 97776554 4566899999999999875 45568999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCC Q lcl|Aclame:pro 389 TEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFI 468 (517) Q Consensus 389 tei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~ 468 (517) |||++++++|++|+++|++.|+.+|++|+++|++|++.++++++..+..++|+|+|+|++++|++++++++++++++|+| T Consensus 390 tEi~s~~~~~~~t~~~~~~~~~~al~~lv~~i~~l~~~~~~~~~~~~~~~~i~v~f~D~i~~D~~~~~~~~~~~v~aG~~ 469 (522) T protein:vir:47 390 TEIVSENSDTYQMRSSIVALVEQSIKELCVSMCELGKAVGVYSGEIPELDDISVNLDDGVFTDRHAELDYWAKMVAAGFS 469 (522) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeEEEcCCCCCCCHHHHHHHHHHHHhcCCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHhccccCCCCCcc---ccCCCCCCCCC Q lcl|Aclame:pro 469 PTVEAIQRIFKVPKKTAEQWLEEIRKDQIELDPVTISQ---RAQKRMFGDEE 517 (517) Q Consensus 469 S~~~~l~~~~~~~eeea~~el~~i~~E~~~~~~~~~~~---~~~~~~~G~ee 517 (517) |+++||+++||||||||++|++||++|+++++|...+. ..+....|||| T Consensus 470 s~e~~i~~~~g~~eeea~~el~ri~~E~~~~~~~~~~~~~~~~~~~~~~d~~ 521 (522) T protein:vir:47 470 TKKRAIGKTLNISGVEAEKELNAINSELLPMNDAELAIYGMHDQNEEKADDK 521 (522) T ss_pred CHHHHHHhcCCCChHHHHHHHHHHHHhhccCCCCCCCCCCCCCcccccCCCC Confidence 99999999999999999999999999998876654332 22345567788 No 3 >protein:vir:9815 Length: 500 # NCBI annotation: putative minor capsid protein # Family: family:all:898 # MgeID: mge:176 # MgeName: 315.4 # Cross-refs: genbank:acc:NP_795577;genbank:gi:28876344;genbank:GeneID:1257866 Probab=100.00 E-value=4.4e-148 Score=828.42 Aligned_cols=497 Identities=42% Similarity=0.723 Sum_probs=468.3 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccChHHHHH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLRKLSA 80 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~~~i~ 80 (517) ||||++||+||||+++.+..++++++++|++|++|++|+++|++|++||+|+++++.+++..+..+.+++.|+|+|+.|| T Consensus 1 m~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~slnl~~~i~ 80 (500) T protein:vir:98 1 MGVIQKIKNLVTRSKYVMTTQSLTNITDHPKIAISKLEYDRITTNLKYYKSDWDSVLYLNTDGETKKRDLNHLPIARTAA 80 (500) T ss_pred CchHHHHHHHHHHHHHHhhcchhhhhhccccccCCHHHHHHHHHHHHHhcCCCCCcccccCCCCcccCceeecchHHHHH Confidence 99999999999999998888999999999999999999999999999999999999999998888889999999999999 Q ss_pred HHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeCCeeEEEEEcC Q lcl|Aclame:pro 81 DVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDNGEIEFSWALA 160 (517) Q Consensus 81 ~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~g~~~i~~v~a 160 (517) +++|+|||+|+|+|++++ +.++++|++++++|+|..++.++++.|+++|++|||||||+++++|++|+| T Consensus 81 ~~~A~lv~~e~~~i~~~d-----------~~~~~~l~~il~~n~f~~~~~~~~e~a~a~G~~~~k~~~d~~~~~I~~v~a 149 (500) T protein:vir:98 81 KKIASLVFNEQAEIKVDD-----------DAANEFISETLKNDRFNKNFERYLESCLALGGLAMRPYVDGDKVRVAFVQA 149 (500) T ss_pred HHHhhhhcCCcceEecCC-----------hHHHHHHHHHHhhccHHHHHHHHHHHHhhcCCEEEEEEEeCCceEEEEEcC Confidence 999999999999999976 357899999999999999999999999999999999999999999999999 Q ss_pred CeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccccCCCC Q lcl|Aclame:pro 161 NAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEGMQ 240 (517) Q Consensus 161 ~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~ 240 (517) ++|+|+++++++++++||++++....+++.+|||+||+|+|.. .+.|+|+|++|++.+.+.+|.+|||+++|++++ T Consensus 150 d~~~P~~~d~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~----~~~~~I~n~ly~~~~~~~lG~~v~l~~~~~~l~ 225 (500) T protein:vir:98 150 PVFLPLQSNTQDVSSAAVVIKSVKTINGKEVYYTLIEFHEWQS----SDDYVISNELYRSDDKAKVGSRVPLSEVYKDLK 225 (500) T ss_pred CeeEEEEEcCCCeEEEEEEEEEeeeecCCceEEEEEEEEEEeC----CceeEEEEEEEecccccccCcccccccccCCcC Confidence 9999999999999999999988888888889999999999853 246899999999999999999999999999999 Q ss_pred cceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeecchHHhccCCCCcccc Q lcl|Aclame:pro 241 EKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRTVFVSDVMLRTVPDESGMP 320 (517) Q Consensus 241 ~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~l~~~~~~~~~~ 320 (517) +++.++|+++|+|+||++|++|+++.+||+|+|+|++++++||+||++||+|+|++++|+++|+||++||+.+++++++. T Consensus 226 ~~~~~~~~~~p~f~~~~~~~~N~~~~~sp~G~S~~~~~~~lid~lD~~~s~~~~e~~~g~~~i~v~~~~l~~~~~~~~g~ 305 (500) T protein:vir:98 226 DEAKVTDVTRPIFTYLKTPGMNNKDINSPLGLSIFDNAKTTIDFINTTYDEFMWEVKMGQRRVAVPESLTALTVRTTDGD 305 (500) T ss_pred cceEeccCCCccEEEecCCccccccCCCccCCchhhhhHHHHHHHHHHHHHHHHHHHhCcceeeechHHhcccCCCCCcc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888775543 Q ss_pred --cCccCCcccceeeeecCC-CCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHHHHHHHH Q lcl|Aclame:pro 321 --PPQVFDPDVNVYKSIRMG-TDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVSENDL 397 (517) Q Consensus 321 --~~~~fd~~~~~y~~~~~~-~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a~~~~ 397 (517) +++.|+.++++|+.++++ +++.+++++||+||+++|.++++.+|++|+++||||+++||++++|.+|||||++++++ T Consensus 306 ~~~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~gls~~~~~~~~~g~~TAtei~s~~~~ 385 (500) T protein:vir:98 306 VVPRPRFESDQNVYIRMGGRDLDSSAIQDLTTPIRADDYIKAINEGLSLFEMQIGVSAGLFSFDGKSMKTATEIVSENSD 385 (500) T ss_pred ccCCcccCCCcceEEEcCCCCCcCcceeEeccccChHHHHHHHHHHHHHHHHHhCCCccccccCcCccccHHHHHHHHHH Confidence 456789999999998865 45568999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCCHHHHHHhh Q lcl|Aclame:pro 398 TYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTVEAIQRI 477 (517) Q Consensus 398 ~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~~~l~~~ 477 (517) |+++++++++.|+.+|++|+++|+++++.++++++..+..++|+|+|+|++++|++++++++++++++|+||+++||+++ T Consensus 386 ~~~t~~~~~~~~~~al~~lv~~il~~~~~~~~~~~~~~~~~~v~v~f~d~i~~d~~~~~~~~~~~v~aGi~s~~~~i~~~ 465 (500) T protein:vir:98 386 TYQMRNSIVALVEQSLKELVISIFEIAKAYDLYQSEVPSMDNISISLDDGVFTDRDAELDYWIKVVNAGFGTREMAIQKV 465 (500) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcceEEEeCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHhc Confidence 99999999999999999999999999999999999888899999999999999999999999999999999999999999 Q ss_pred CCCCHHHHHHHHHHHHHhccccCCCCCccccCCCCCCC Q lcl|Aclame:pro 478 FKVPKKTAEQWLEEIRKDQIELDPVTISQRAQKRMFGD 515 (517) Q Consensus 478 ~~~~eeea~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ 515 (517) |||+||||++|++||++|+.+. .+..++..+..|| T Consensus 466 ~g~~eeea~~~l~~i~~E~~~~---~~~~~~~~~~~g~ 500 (500) T protein:vir:98 466 LNVTEEKAQEIAAEINTGIVDE---INQQRTDTHLYGE 500 (500) T ss_pred CCCCHHHHHHHHHHHHHhcccc---CCCCCccccccCC Confidence 9999999999999999987533 3344567788888 No 4 >protein:vir:3028 Length: 500 # NCBI annotation: minor capsid protein # Family: family:all:898 # MgeID: mge:61 # MgeName: PhiNIH1.1 # Cross-refs: genbank:acc:NP_438141;genbank:gi:16271804;genbank:GeneID:929241 Probab=100.00 E-value=4.4e-148 Score=828.42 Aligned_cols=497 Identities=42% Similarity=0.723 Sum_probs=468.3 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccChHHHHH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLRKLSA 80 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~~~i~ 80 (517) ||||++||+||||+++.+..++++++++|++|++|++|+++|++|++||+|+++++.+++..+..+.+++.|+|+|+.|| T Consensus 1 m~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~slnl~~~i~ 80 (500) T protein:vir:30 1 MGVIQKIKNLVTRSKYVMTTQSLTNITDHPKIAISKLEYDRITTNLKYYKSDWDSVLYLNTDGETKKRDLNHLPIARTAA 80 (500) T ss_pred CchHHHHHHHHHHHHHHhhcchhhhhhccccccCCHHHHHHHHHHHHHhcCCCCCcccccCCCCcccCceeecchHHHHH Confidence 99999999999999998888999999999999999999999999999999999999999998888889999999999999 Q ss_pred HHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeCCeeEEEEEcC Q lcl|Aclame:pro 81 DVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDNGEIEFSWALA 160 (517) Q Consensus 81 ~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~g~~~i~~v~a 160 (517) +++|+|||+|+|+|++++ +.++++|++++++|+|..++.++++.|+++|++|||||||+++++|++|+| T Consensus 81 ~~~A~lv~~e~~~i~~~d-----------~~~~~~l~~il~~n~f~~~~~~~~e~a~a~G~~~~k~~~d~~~~~I~~v~a 149 (500) T protein:vir:30 81 KKIASLVFNEQAEIKVDD-----------DAANEFISETLKNDRFNKNFERYLESCLALGGLAMRPYVDGDKVRVAFVQA 149 (500) T ss_pred HHHhhhhcCCcceEecCC-----------hHHHHHHHHHHhhccHHHHHHHHHHHHhhcCCEEEEEEEeCCceEEEEEcC Confidence 999999999999999976 357899999999999999999999999999999999999999999999999 Q ss_pred CeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccccCCCC Q lcl|Aclame:pro 161 NAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEGMQ 240 (517) Q Consensus 161 ~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~ 240 (517) ++|+|+++++++++++||++++....+++.+|||+||+|+|.. .+.|+|+|++|++.+.+.+|.+|||+++|++++ T Consensus 150 d~~~P~~~d~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~----~~~~~I~n~ly~~~~~~~lG~~v~l~~~~~~l~ 225 (500) T protein:vir:30 150 PVFLPLQSNTQDVSSAAVVIKSVKTINGKEVYYTLIEFHEWQS----SDDYVISNELYRSDDKAKVGSRVPLSEVYKDLK 225 (500) T ss_pred CeeEEEEEcCCCeEEEEEEEEEeeeecCCceEEEEEEEEEEeC----CceeEEEEEEEecccccccCcccccccccCCcC Confidence 9999999999999999999988888888889999999999853 246899999999999999999999999999999 Q ss_pred cceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeecchHHhccCCCCcccc Q lcl|Aclame:pro 241 EKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRTVFVSDVMLRTVPDESGMP 320 (517) Q Consensus 241 ~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~l~~~~~~~~~~ 320 (517) +++.++|+++|+|+||++|++|+++.+||+|+|+|++++++||+||++||+|+|++++|+++|+||++||+.+++++++. T Consensus 226 ~~~~~~~~~~p~f~~~~~~~~N~~~~~sp~G~S~~~~~~~lid~lD~~~s~~~~e~~~g~~~i~v~~~~l~~~~~~~~g~ 305 (500) T protein:vir:30 226 DEAKVTDVTRPIFTYLKTPGMNNKDINSPLGLSIFDNAKTTIDFINTTYDEFMWEVKMGQRRVAVPESLTALTVRTTDGD 305 (500) T ss_pred cceEeccCCCccEEEecCCccccccCCCccCCchhhhhHHHHHHHHHHHHHHHHHHHhCcceeeechHHhcccCCCCCcc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888775543 Q ss_pred --cCccCCcccceeeeecCC-CCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHHHHHHHH Q lcl|Aclame:pro 321 --PPQVFDPDVNVYKSIRMG-TDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVSENDL 397 (517) Q Consensus 321 --~~~~fd~~~~~y~~~~~~-~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a~~~~ 397 (517) +++.|+.++++|+.++++ +++.+++++||+||+++|.++++.+|++|+++||||+++||++++|.+|||||++++++ T Consensus 306 ~~~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~gls~~~~~~~~~g~~TAtei~s~~~~ 385 (500) T protein:vir:30 306 VVPRPRFESDQNVYIRMGGRDLDSSAIQDLTTPIRADDYIKAINEGLSLFEMQIGVSAGLFSFDGKSMKTATEIVSENSD 385 (500) T ss_pred ccCCcccCCCcceEEEcCCCCCcCcceeEeccccChHHHHHHHHHHHHHHHHHhCCCccccccCcCccccHHHHHHHHHH Confidence 456789999999998865 45568999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCCHHHHHHhh Q lcl|Aclame:pro 398 TYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTVEAIQRI 477 (517) Q Consensus 398 ~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~~~l~~~ 477 (517) |+++++++++.|+.+|++|+++|+++++.++++++..+..++|+|+|+|++++|++++++++++++++|+||+++||+++ T Consensus 386 ~~~t~~~~~~~~~~al~~lv~~il~~~~~~~~~~~~~~~~~~v~v~f~d~i~~d~~~~~~~~~~~v~aGi~s~~~~i~~~ 465 (500) T protein:vir:30 386 TYQMRNSIVALVEQSLKELVISIFEIAKAYDLYQSEVPSMDNISISLDDGVFTDRDAELDYWIKVVNAGFGTREMAIQKV 465 (500) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcceEEEeCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHhc Confidence 99999999999999999999999999999999999888899999999999999999999999999999999999999999 Q ss_pred CCCCHHHHHHHHHHHHHhccccCCCCCccccCCCCCCC Q lcl|Aclame:pro 478 FKVPKKTAEQWLEEIRKDQIELDPVTISQRAQKRMFGD 515 (517) Q Consensus 478 ~~~~eeea~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ 515 (517) |||+||||++|++||++|+.+. .+..++..+..|| T Consensus 466 ~g~~eeea~~~l~~i~~E~~~~---~~~~~~~~~~~g~ 500 (500) T protein:vir:30 466 LNVTEEKAQEIAAEINTGIVDE---INQQRTDTHLYGE 500 (500) T ss_pred CCCCHHHHHHHHHHHHHhcccc---CCCCCccccccCC Confidence 9999999999999999987533 3344567788888 No 5 >protein:vir:79703 Length: 505 # NCBI annotation: minor structural protein gp61 # Family: family:all:898 # MgeID: mge:1873 # MgeName: LL-H # Cross-refs: genbank:acc:YP_001285880;genbank:gi:148750838;genbank:GeneID:5220405 Probab=100.00 E-value=4e-148 Score=828.67 Aligned_cols=493 Identities=38% Similarity=0.634 Sum_probs=461.4 Q ss_pred CchHHHHHHHHHHHHHHhhc-ccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccChHHHH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSG-QTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLRKLS 79 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~~~i 79 (517) ||||++||+|||||.+.+.+ +.+++|++|++|++|++|+++|++|++||+|+++|+++++..+..+.+++.|+|+|+.| T Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~i~d~~~i~~~~~~~~~i~~~~~~Y~g~~~~l~~~~~~~~~~~~~~~slnl~~~i 80 (505) T protein:vir:79 1 MAFWDTLKNLFRKGSAAVGMTKSLGQIIDDPRINLPADEVERIARDKRYYMDDFKQVTHKNSYGDTQKHELQSVNVTKLA 80 (505) T ss_pred CchHHHHHHHHHHhhhhhcchhhhhhhhcccCCCCCHHHHHHHHHHHHHhcCCCccccccccCCCccccceeecchHHHH Confidence 99999999999999987765 67999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeCCeeEEEEEc Q lcl|Aclame:pro 80 ADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDNGEIEFSWAL 159 (517) Q Consensus 80 ~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~g~~~i~~v~ 159 (517) |+++|+|||+|+|+|++++ +.++++|++++++|+|..+++++++.|+++|++|||||||+|+++|++|+ T Consensus 81 ~~~~A~ll~~e~~~i~~~d-----------~~~~e~l~~i~~~n~f~~~~~~~~e~a~a~G~~~~k~~~D~~~~~i~~v~ 149 (505) T protein:vir:79 81 SAKLASLIFNEQCQVTVSD-----------ETANDFLDDVFQQNDFYTTFEEKLEEWIALGSGCVRPYVDSGKIKLAWAT 149 (505) T ss_pred HHHHHhhhcCCCceeecCC-----------hHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCeEEEEEEeCCceEEEEEc Confidence 9999999999999999976 35789999999999999999999999999999999999999999999999 Q ss_pred CCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccc--cC Q lcl|Aclame:pro 160 ANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEEL--YE 237 (517) Q Consensus 160 a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~--~~ 237 (517) |++|+|++++++++.++||+.+..+..+++..|||+||+|++.+ ++|+|+|+||++.+.+.+|.+|||+++ |+ T Consensus 150 ad~~~P~~~d~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~-----~~~~I~n~ly~~~~~~~lG~~v~l~~~~~~~ 224 (505) T protein:vir:79 150 ADQVYPLQADTNQVNELAIASRTTEVENHRTIYYTLLEFHQWDH-----GDYVITNELYRSEAAETVGINVPLNSLEQYE 224 (505) T ss_pred CCeeEEEEEcCCCeEEEEEEEEEEEecCCcceEEEEEEEEEecC-----ceEEEEEEEEecCCCCccCcccchhhccccc Confidence 99999999999999999999888888888888999999999864 679999999999999999999999988 78 Q ss_pred CCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeecchHHhccCCCCc Q lcl|Aclame:pro 238 GMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRTVFVSDVMLRTVPDES 317 (517) Q Consensus 238 ~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~l~~~~~~~ 317 (517) ++++++.++|+++|+|+|||||.+|+++++||+|+|+|++++++||+||++||+|+|++++|+.+|+||++||+.+++++ T Consensus 225 ~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~~id~lD~~~s~~~~e~~~g~~~i~v~~~~l~~~~~~~ 304 (505) T protein:vir:79 225 GLEPQVKITGLKHPLFAFYRNKGANNKNFTSPMGMSLIDNSYTVIDAINRTHDQFVDEVKKGQRRLIVPAEWLKTGSSYG 304 (505) T ss_pred ccCcceeecCCCcceEEEecCCcccccccCCccCCchhhhhHHHHHHHHHHHHHHHHHHHhcccceeechHHhcccCCCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998887 Q ss_pred ccc---cCccCCcccceeeeecCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHHHHH Q lcl|Aclame:pro 318 GMP---PPQVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVSE 394 (517) Q Consensus 318 ~~~---~~~~fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a~ 394 (517) +.. .+++|+.+.++|+.+.+++++.+++++||+||+++|+++++.++++|+++||||+++||++++|.+|||||+++ T Consensus 305 ~~~~~~~~~~fd~~~~~y~~~~~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~s~ 384 (505) T protein:vir:79 305 GQASETHPPMFDPDETVYQAMYGDASEVGFHDATSPIRVADYQATMDFFLREFENQTGLSQGTFTTSPSGIQTATEVVTN 384 (505) T ss_pred cccccccccCCCccceeeeeccCCCCCCceEEecccCCHHHHHHHHHHHHHHHHHHhCCChhhcCCCccccchHHHHHHH Confidence 753 34579999999999999888889999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC------CCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCC Q lcl|Aclame:pro 395 NDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGG------EIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFI 468 (517) Q Consensus 395 ~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~------~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~ 468 (517) +++|++|+++|++.|+.+|++|+++|+++++.+.++.. ...+.++|+|+|+|++++|++++++++++++++|+| T Consensus 385 ~~~l~~t~~~~~~~~~~al~~li~~i~~~~~~~~~~~~g~~~~~~~~~~~~i~v~f~d~i~~d~~~~~~~~~~~v~~Gi~ 464 (505) T protein:vir:79 385 NSQTYQTRSSYITQVEKTIKALTYAILELASVPSFYADGQARWTGDVDSLDITINFNDGVFVDQESKRAADLQAVQAQVM 464 (505) T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCceeEEEEeCCCCCCCHHHHHHHHHHHHHcCCC Confidence 99999999999999999999999999999998765432 334567899999999999999999999999999999 Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHhccccCCCCCccccCCCCCCCC Q lcl|Aclame:pro 469 PTVEAIQRIFKVPKKTAEQWLEEIRKDQIELDPVTISQRAQKRMFGDE 516 (517) Q Consensus 469 S~~~~l~~~~~~~eeea~~el~~i~~E~~~~~~~~~~~~~~~~~~G~e 516 (517) |+++||++++||+|+||++|++||++|+++.+|.. ...|+| T Consensus 465 s~e~~l~~~~~~~eeea~~el~ri~~E~~~~~p~~-------~~~gg~ 505 (505) T protein:vir:79 465 PKKQFLMRNYGLDEEEADEWLAQIDAENSTAEPEF-------NQFGGD 505 (505) T ss_pred CHHHHHHhcCCCChHHHHHHHHHHHHhccccCCCc-------hhccCC Confidence 99999999999999999999999999998766542 223444 No 6 >protein:vir:1587 Length: 508 # NCBI annotation: minor capsid protein # Family: family:all:898 # MgeID: mge:32 # MgeName: phig1e # Cross-refs: genbank:acc:NP_695169;swissprot:trembl:o03928;genbank:gi:23455800;interpro:IPR006432;uniprot:O03928;genbank:GeneID:955566 Probab=100.00 E-value=4.6e-147 Score=822.84 Aligned_cols=496 Identities=39% Similarity=0.623 Sum_probs=463.4 Q ss_pred CchHHHHHHHHHHHHHHhhc-ccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccChHHHH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSG-QTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLRKLS 79 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~~~i 79 (517) ||||++||+||||+.+.+++ ++|++|++|++|++|++|+.||.+|++||+|+++|++++..++..+.+.+.|+|+|+.| T Consensus 1 m~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ri~~~~~~y~g~~~~~~~~~~~~~~~~~~~~sln~~~~i 80 (508) T protein:vir:15 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTA 80 (508) T ss_pred CChHHHHHHHHHHHHHHhccccchHHhhcccccccCHHHHHHHHHHHHHhcCCCcccccccCCCCccccceeecchHHHH Confidence 99999999999999977765 78999999999999999999999999999999999999888888888888999999999 Q ss_pred HHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeCCeeEEEEEc Q lcl|Aclame:pro 80 ADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDNGEIEFSWAL 159 (517) Q Consensus 80 ~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~g~~~i~~v~ 159 (517) |+++|+|||+|+|+|++++. +.++++|++++++|+|..+++++++.|+++|++|||||||+++++|++|+ T Consensus 81 ~~~~A~lv~~e~~~i~v~~~----------~~~~e~l~~il~~n~f~~~~~~~~e~a~a~G~~~~k~~~d~~~~~i~~v~ 150 (508) T protein:vir:15 81 ARRIASVVFNEKAEIHVKDN----------NEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDGNHIKIAWVR 150 (508) T ss_pred HHHHHhhhhCCCceEEeCCc----------hHHHHHHHHHHHhccHHHHHHHHHHHHhhcCceEEEEEEeCCeeEEEEEc Confidence 99999999999999999753 34678999999999999999999999999999999999999999999999 Q ss_pred CCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccc--cC Q lcl|Aclame:pro 160 ANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEEL--YE 237 (517) Q Consensus 160 a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~--~~ 237 (517) |++|+|+++++++++++||+..+...+..+.+|||+||+|+|+. +|.|+|+|++|++.+.+++|.+|||+++ |+ T Consensus 151 ad~~~P~~~d~~~~~~~af~~~~~~~~~~~~~~yt~lE~h~~~~----~~~~~I~n~ly~~~~~~~lG~~v~l~~~~e~~ 226 (508) T protein:vir:15 151 ADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQD----NGSYQITNELYKSDSPDIVGNQVPLSTLPVYK 226 (508) T ss_pred CCeeEEEEEcCCCeEEEEEEEEEEeecCCCceEEEEEEEEEEec----CcceEEEEEEEecCCchhcCcccchhhccccc Confidence 99999999999999999999988887777889999999999853 4789999999999999999999999988 77 Q ss_pred CCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeecchHHhccCCCCc Q lcl|Aclame:pro 238 GMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRTVFVSDVMLRTVPDES 317 (517) Q Consensus 238 ~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~l~~~~~~~ 317 (517) ++++++.++|+++|+|+|||||++|+++.+||||+|+|++++++||+||++||+|+|+|++|+++|+||+++++.+++++ T Consensus 227 ~l~~~~~~~g~~~p~f~y~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~l~~d~~~~ 306 (508) T protein:vir:15 227 ELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGMLRFDDEHK 306 (508) T ss_pred CCCcceEecCCCcceeEEecCCccccccCCCCcCCchHhhhHHHHHHHHHHHHHHHHHHHhcccceeechHHhcCCCCCc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999766653 Q ss_pred ccccCccCCcccceeeeecCCC-CCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHHHHHHH Q lcl|Aclame:pro 318 GMPPPQVFDPDVNVYKSIRMGT-DEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVSEND 396 (517) Q Consensus 318 ~~~~~~~fd~~~~~y~~~~~~~-~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a~~~ 396 (517) ..|+.++++|+.+++++ ++.+++++||+||+++|.++++.++++|+++||+|+++||+++++.+|||||+++++ T Consensus 307 -----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~e~~~~~~~~~l~~~~~~~gls~~~f~~~~~~~~TAtei~s~~~ 381 (508) T protein:vir:15 307 -----PTFDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNS 381 (508) T ss_pred -----cccCCCCeeEEeccCCCCCCCceeEeecccChHHHHHHHHHHHHHHHHHhCCCchhcccccCccccHHHHHHHHH Confidence 35899999999998654 456799999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCC--------CCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCC Q lcl|Aclame:pro 397 LTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGE--------IPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFI 468 (517) Q Consensus 397 ~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~--------~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~ 468 (517) +|++|+++|++.|+.+|++|+++|+++++.+++..+. ....++|+|+|+|++++|++++++++++++++|+| T Consensus 382 ~~~~t~~~~~~~~~~al~~lv~~il~l~~~~~~~~~g~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~v~aGi~ 461 (508) T protein:vir:15 382 MTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGAL 461 (508) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccCCcceEEEeCCCCCCCHHHHHHHHHHHHhcCCC Confidence 9999999999999999999999999999987766543 23567899999999999999999999999999999 Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHhccccCCCCCccccCCCCCCC Q lcl|Aclame:pro 469 PTVEAIQRIFKVPKKTAEQWLEEIRKDQIELDPVTISQRAQKRMFGD 515 (517) Q Consensus 469 S~~~~l~~~~~~~eeea~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ 515 (517) |+++||+++||||||||++|++||++|++++++......+..|..|| T Consensus 462 s~e~~i~~~~g~~deea~~el~ri~~E~~~~~~~~~~~~~~~g~~ge 508 (508) T protein:vir:15 462 SKQTFLQRNYGMTDEQAAEELAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) T ss_pred CHHHHHHhcCCCChHHHHHHHHHHHHhccccCccccccccCCCCCCC Confidence 99999999999999999999999999999988888878777777777 No 7 >protein:vir:80959 Length: 499 # NCBI annotation: gp3 # Family: family:all:898 # MgeID: mge:1886 # MgeName: A500 # Cross-refs: genbank:acc:YP_001468389;genbank:gi:157324963;genbank:GeneID:5601394 Probab=100.00 E-value=8.7e-135 Score=755.54 Aligned_cols=493 Identities=34% Similarity=0.592 Sum_probs=450.4 Q ss_pred hHHHHHHHHHHHHHHhhc-ccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccc--cCccccccccccChHHHH Q lcl|Aclame:pro 3 VIQRIKNFFKRGGYALSG-QTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINS--QGKIQERDYMTLNLRKLS 79 (517) Q Consensus 3 ~~~~ik~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~--~~~~~~~~~~~ln~~~~i 79 (517) ||++||++||....+|++ ++++.+++|.+|++|++|+.+|.+|++||+|+++.++.+.. .++++.+++.|+|+|+.| T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~s~n~~~~i 80 (499) T protein:vir:80 1 MINQIIAGVKGVMRRMGLLKSLKDVTDHKKVNANDEDYKYIDMWKRLYQGNYAEWHNLNYEHNGNPVNRRQLSMNLPKVT 80 (499) T ss_pred ChhHHHHHHHHHHHHhccccchhhhhcCCCCcCCHHHHHHHHHHHHHhcCCcchhhccccccCCCccccceeecchHHHH Confidence 888888888877776666 57999999999999999999999999999999887765433 345566788999999999 Q ss_pred HHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe-CCeeEEEEE Q lcl|Aclame:pro 80 ADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD-NGEIEFSWA 158 (517) Q Consensus 80 ~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d-~g~~~i~~v 158 (517) |+++|+|||+||++|++++ +.++++|++++++|+|..+++++++.|+++|++|+|||+| +|+++|+++ T Consensus 81 v~~~a~~l~~ep~~i~~~d-----------~~~~e~l~~~~~~n~f~~~~~~~~~~a~~~G~~~~~~~~D~~~~~~i~~v 149 (499) T protein:vir:80 81 AKYMSKLLFNEKVKINIDD-----------ETAEEFVLNVLKTNGFTKNMERYIEYGEAMGGFVIKVYHDGNKNVKVSFA 149 (499) T ss_pred HHHHHHhhhCCcceEeeCC-----------HHHHHHHHHHHhhccHHHHHHHHHHHHhhcCcEEEEEEECCCCcEEEEEE Confidence 9999999999999999976 3578999999999999999999999999999999999998 689999999 Q ss_pred cCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccccCC Q lcl|Aclame:pro 159 LANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEG 238 (517) Q Consensus 159 ~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~ 238 (517) +|++++|++++++++..+||+.... .++++||+||+|+|.+. ..+.|+|+|++|++.+.+.+|.+|||+++|++ T Consensus 150 ~a~~~~Pi~~d~~~~~~~~f~~~~~----~~~~~y~~lE~h~~~~~--~~~~y~I~n~~~~~~~~~~lG~~v~l~~~~~~ 223 (499) T protein:vir:80 150 TADCMYPLSNDSENVDECLIANSFH----KNNKYYKLLEWNEWKGE--KEEVYTVTTELYQSDDPNELGGKVSLKLLFND 223 (499) T ss_pred cCCceEEEEecCCCeEEEEEEEEEe----ecCeEEEEEEEEEeccc--ceeeEEEEEEEEeccCccccCcccchhhhccC Confidence 9999999999999999999876433 24579999999998763 34689999999999999999999999999999 Q ss_pred CCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeecchHHhccCCCCcc Q lcl|Aclame:pro 239 MQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRTVFVSDVMLRTVPDESG 318 (517) Q Consensus 239 l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~l~~~~~~~~ 318 (517) +++.+.++|+++|+|+|||||.+|+++.+||||+|+|++++++||+||++||+|+|++++++.+|+||++||+.+++++| T Consensus 224 ~~~~~~~~~~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~l~~~~~~~g 303 (499) T protein:vir:80 224 IEPVVPLPSLTRPTFIYIKPNIANNKNLTSPLGISVYANALDTLKTLDLMFDSYYQEFKLGKKKVLVPSSFVKTAVNLDG 303 (499) T ss_pred cCCceeecCCCccceEeecCCccccccCCCccCCchHhhHHHHHHHHHHHHHHHHHHHHhcccceecchhhhhccCCCCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888777 Q ss_pred cccCccCCcccceeeeecCCC--CCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHHHHHHH Q lcl|Aclame:pro 319 MPPPQVFDPDVNVYKSIRMGT--DEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVSEND 396 (517) Q Consensus 319 ~~~~~~fd~~~~~y~~~~~~~--~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a~~~ 396 (517) .. ...|+.++++|+.+++.+ ++.+++++||+||+++|+++++.++++|++.||+|+++||++++|.+|||||+++++ T Consensus 304 ~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~g~s~~~fg~~~~g~~TAtei~s~~~ 382 (499) T protein:vir:80 304 ST-TQYFDSTDEAFFLYQGEQDDNGKAIKDISVEIRSTEFIESINAMLRIYAMQVGLSAGTFTFDENGLKTATEVVSEKS 382 (499) T ss_pred Cc-ccCCCcccceeeEeeccCCCCcCceeEecCcCChHHHHHHHHHHHHHHHHhcCCChhhcCCCcccchhHHHHHHHHH Confidence 65 456999999999987643 345799999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCCHHHHHHh Q lcl|Aclame:pro 397 LTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTVEAIQR 476 (517) Q Consensus 397 ~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~~~l~~ 476 (517) +|+++++++++.|+.+|++|+++|+++++.+..+.+..++.++|+|+|+|++++|++++++++++++++|+||++++|++ T Consensus 383 ~l~~~~~~~~~~~~~~l~~l~~~il~~~~~~~~~~~~~~~~~~v~v~f~d~i~~d~~~~~~~~~~~~~~Gi~S~et~l~~ 462 (499) T protein:vir:80 383 ETYQTKNSHSQLIEQGIKEMIVSILEVGKLIKAYDGDTVELDTITVDFDDSIAQDEDTTINRYTTAKNQGMIPLKIALQR 462 (499) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCccceEEEeCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHhh Confidence 99999999999999999999999999999988888777778899999999999999999999999999999999999999 Q ss_pred hCCCCHHHHHHHHHHHHHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 477 IFKVPKKTAEQWLEEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 477 ~~~~~eeea~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) ++|++|+||++|++||++|++.+.|.++ ..|.+|++| T Consensus 463 ~~~~~d~ea~~el~~i~~E~~~~~~~~d----~~g~~ge~e 499 (499) T protein:vir:80 463 AWNITEAEADEWAEMLAKEKQAEIPNND----MTGIFGEEE 499 (499) T ss_pred cCCCChHHHHHHHHHHHHHhhcCCCCCC----ccccCCCCC Confidence 9999999999999999999977655432 458889999 No 8 >protein:vir:38 Length: 496 # NCBI annotation: putative portal protein # Family: family:all:898 # MgeID: mge:2 # MgeName: A118 # Cross-refs: genbank:acc:NP_463464;swissprot:trembl:q9t1c0;genbank:gi:16798786;uniprot:Q9T1C0;genbank:GeneID:922383 Probab=100.00 E-value=4.2e-126 Score=707.93 Aligned_cols=490 Identities=34% Similarity=0.603 Sum_probs=448.5 Q ss_pred hHHHHHHHHHHHHHHhhc-ccchhhhccccCcCCHHHHHHHHHHHHHhcCCCccccccc--ccCccccccccccChHHHH Q lcl|Aclame:pro 3 VIQRIKNFFKRGGYALSG-QTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYIN--SQGKIQERDYMTLNLRKLS 79 (517) Q Consensus 3 ~~~~ik~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~--~~~~~~~~~~~~ln~~~~i 79 (517) ||++||.+||....++++ ++++.+.+|.+|++|++|+.+|.+|++||.|+++.++.+. ..++.+.+++.|+|+|+.| T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~n~~k~i 80 (496) T protein:vir:38 1 MINQIIAGVKGVMRRMGLLKALKDVKDHKKVNANDEDYKYIDMWKRLYQGHYAEWHNLNYEHNGNPVNRRQLSMNLPKVT 80 (496) T ss_pred ChhHHHHHHHHHHHHhccchhhHHHHhcCCCcCCHHHHHHHHHHHHHhcCCCchhhcchhccCCCccccceeecchHHHH Confidence 888888888888877766 7899999999999999999999999999999998776543 3455666788999999999 Q ss_pred HHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe-CCeeEEEEE Q lcl|Aclame:pro 80 ADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD-NGEIEFSWA 158 (517) Q Consensus 80 ~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d-~g~~~i~~v 158 (517) |+++|+||+++||+|++++ +..+++|++++++|+|..++.++++.|+++|++|+|||+| +|+++|+++ T Consensus 81 ~~~~a~~l~~~p~~i~~~d-----------~~~~e~l~~~~~~n~f~~~~~~~~~~a~~~G~~~~~~~~D~~~~~~i~~v 149 (496) T protein:vir:38 81 AKYMSKLLFNEKVKINIDD-----------KAAEEFVLNVLKTNGFTKNMERYIEYGEAMGGFVIKVYHDGNKNVKVSFA 149 (496) T ss_pred HHHHhhhhhCCcceEeeCC-----------hHHHHHHHHHHhccCHHHHHHHHHHHHhhhCcEEEEEEEcCCCcEEEEEE Confidence 9999999999999999976 3578999999999999999999999999999999999999 589999999 Q ss_pred cCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccccCC Q lcl|Aclame:pro 159 LANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEG 238 (517) Q Consensus 159 ~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~ 238 (517) +|++++|++++.+++.++||+.... .++++|++||+|++. ++.|+|+|++|++.+.+.+|.+||++++|++ T Consensus 150 ~~~~~~P~~~~~~~~~~~~f~~~~~----~~~~~y~~le~h~~~-----~~~~~I~~~~y~~~~~~~~g~~v~~~~~~~~ 220 (496) T protein:vir:38 150 TADCMYPLSNDSENVDECVIANSFH----KNNKYYTLLEWNEWQ-----GDVYTVTTELYQSDDPNELGTKVSLTLLFDD 220 (496) T ss_pred cccceEEEEecCCcEEEEEEEEEEE----eCCeEEEEEEEEEEe-----CceEEEEEEEEecCCccccCccccccccccc Confidence 9999999999998888888876433 256789999999976 3779999999999999999999999999999 Q ss_pred CCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeecchHHhccCCCCcc Q lcl|Aclame:pro 239 MQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRTVFVSDVMLRTVPDESG 318 (517) Q Consensus 239 l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~l~~~~~~~~ 318 (517) +++.++++|+++|+|+||++|.+|+++.+||+|+|+|++++++||+||++||+++|++++++++|+||+++++..++++| T Consensus 221 ~~~~~~~~~~~~~~f~~~~~~~~N~~~~~~p~G~Sd~~~~~~lid~ld~~~s~~~~~~~~~~~~i~v~~~~l~~~~~~~g 300 (496) T protein:vir:38 221 IEPVVPLPDFTRPTFIYIKPNIANNKNLTSPLGISVYANALDTLKTLDLMFDSYYQEFKLGKKKVLVPSSFVKTAVNLDG 300 (496) T ss_pred cccceeecCCCcceEEEecCCcccccccCCcCCCchHhhHHHHHHHHHHHHHHHHHHHhhcccceecchHHhhccCCCCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888877 Q ss_pred cccCccCCcccceeeeecCCC--CCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHHHHHHH Q lcl|Aclame:pro 319 MPPPQVFDPDVNVYKSIRMGT--DEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVSEND 396 (517) Q Consensus 319 ~~~~~~fd~~~~~y~~~~~~~--~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a~~~ 396 (517) ... ..|+.++++|..+.+++ ++.+++.++|+||+++|.+.++.++++|++.||+|+++||++++|.+||||++++++ T Consensus 301 ~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~e~~~~~l~~~l~~i~~~~g~~~~~f~~~~~g~~tAtei~~~~~ 379 (496) T protein:vir:38 301 STT-QYFDSTDEAFFLYQGDQDDNGKAIKDISVEIRSTEFIESINAMLRIYAMQVGLSAGTFTFDENGLKTATEVVSEKS 379 (496) T ss_pred ccc-cCCCCccceEEEeecCCCcccccceeeccccCHHHHHHHHHHHHHHHHHhhCCChhhcCCCccccchHHHHHHHHH Confidence 654 56899999998887643 345799999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCCHHHHHHh Q lcl|Aclame:pro 397 LTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTVEAIQR 476 (517) Q Consensus 397 ~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~~~l~~ 476 (517) +|++++++++++|+.+|++|+++|+++++.+..+++..++..+|+|+|+|++++|++++++++++++++|+||++++|++ T Consensus 380 ~l~~~~~~~~~~~~~~l~~l~~~il~~~~~~~~~~g~~~~~~~i~v~f~d~i~~d~~~~~~~~~~~~~~GiiS~et~l~~ 459 (496) T protein:vir:38 380 ETYQTKNSHSQLIEQGIKEMIVSILEVGKFIEAYSGEVVELDTITVDFDDSIAQDEDTTINRYTNAKNQGMIPLKIALQR 459 (496) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccceEEEeCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHh Confidence 99999999999999999999999999999888888888888899999999999999999999999999999999999999 Q ss_pred hCCCCHHHHHHHHHHHHHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 477 IFKVPKKTAEQWLEEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 477 ~~~~~eeea~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) +++++|++|++|++||++|++++.|.+ ...+.+||+| T Consensus 460 ~~~~~d~ea~~el~ri~~E~~~~~~~~----d~~~~~~~~e 496 (496) T protein:vir:38 460 AWNITEAEADEWAEMLAKEKQAEMPNN----DMNGIFGEEE 496 (496) T ss_pred cCCCChHHHHHHHHHHHHhhhccCccc----cccCCCCCCC Confidence 999999999999999999997766532 3456788888 No 9 >protein:vir:78907 Length: 518 # NCBI annotation: gp3 # Family: family:all:4147 # MgeID: mge:1859 # MgeName: A006 # Cross-refs: genbank:acc:YP_001468843;genbank:gi:157325445;genbank:GeneID:5601904 Probab=100.00 E-value=2.4e-118 Score=665.46 Aligned_cols=490 Identities=15% Similarity=0.087 Sum_probs=402.8 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccc--------cccCccccccccc Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYI--------NSQGKIQERDYMT 72 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~--------~~~~~~~~~~~~~ 72 (517) ||+|+.||++|+. ++.+.+ ++..+++|..++++|++...+++++ +....+..+++.| T Consensus 1 ~~~~~~~~~~i~~---w~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 65 (518) T protein:vir:78 1 MGVWSVMTRFIKG---WLNGKP------------NGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMN 65 (518) T ss_pred CcchhhHHHHHHH---hhcCCC------------CccchhccHHHhhhcccchhhhhhhhhhhhhcccCCCCcccccccc Confidence 9999999999964 433322 3456778888888888775543211 1123345567789 Q ss_pred cChHHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeCCe Q lcl|Aclame:pro 73 LNLRKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDNGE 152 (517) Q Consensus 73 ln~~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~g~ 152 (517) +|||+.||+++|+|||+|+|+|+|++... ...+.++++|++++++|+|..+++++++.|+++|++|||||||+|+ T Consensus 66 ~~l~~~i~~~~A~ll~~e~~~i~v~~~~~-----~d~e~~~~~l~~il~~n~f~~~~~~~~e~a~a~G~~~~k~~~d~~~ 140 (518) T protein:vir:78 66 SGTGNEIVVVAAEYISGKPLSIDVTGVNG-----SKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILNGR 140 (518) T ss_pred CChHHHHHHHHHHhhcCCCceEEecCccc-----cCcHHHHHHHHHHHHhccHHHHHHHHHHHhhccCceEEEEEEECCe Confidence 99999999999999999999999976432 1235689999999999999999999999999999999999999999 Q ss_pred eEEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceee---ccceEEEEEEEeecCCcccc-Cc Q lcl|Aclame:pro 153 IEFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEE---GESLYVITNELYKSDNEGEI-GK 228 (517) Q Consensus 153 ~~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~---~~~~y~I~n~ly~~~~~~~l-G~ 228 (517) ++|++|+|++|+|+++ +++.++++|+... ..+++.++||+||+|+++++.+ ..+.|+|+|+||++.....+ +. T Consensus 141 ~~i~~v~ad~~~P~~~-~g~~~~~~f~~~~--~~~~k~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~ 217 (518) T protein:vir:78 141 PSISVHSSSQFWIDFK-NNEPFRFNFFEEI--PTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPIS 217 (518) T ss_pred eEEEEEcCCeeEEEee-cCcEEEEEEEEEe--ecCCcceeEEEEEeeccccccceeecccceeEEEEEeeecCccccccc Confidence 9999999999999865 4677887776432 2345567999999999987643 34678999999987533221 22 Q ss_pred ccccc----c--ccCCCCcceE-EcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccc Q lcl|Aclame:pro 229 RIPLE----E--LYEGMQEKTY-IQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQR 301 (517) Q Consensus 229 ~v~l~----~--~~~~l~~~~~-~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~ 301 (517) .+++. + .|+++++++. .+|.++|+|.|++|+.+|+++.+||||+|||++++++||+||++||+|+|+|++|++ T Consensus 218 ~~~~~~~l~~~~~~~~~~e~~~~~tg~~~~~~~~~~n~~~N~~~~~splG~S~~~~~~~~id~lD~~~s~~~~e~~~g~~ 297 (518) T protein:vir:78 218 AERLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKT 297 (518) T ss_pred ccccccccccccccccCccceeeccCCccceEEeeccccccccccCCCcCcchHhhhhHHHHHHHHHHHHHHHHHHhCCc Confidence 33332 1 2456666654 466666667777888999999999999999999999999999999999999999999 Q ss_pred eeecchHHhccCCCCcccccCccCCcccceeeeecCCCC-----CCcceEEecccChHHHHHHHHHHHHHHHHHhCCCcc Q lcl|Aclame:pro 302 TVFVSDVMLRTVPDESGMPPPQVFDPDVNVYKSIRMGTD-----EEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVG 376 (517) Q Consensus 302 ~i~v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~-----~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~ 376 (517) +|+||+++|+.++++++....+.|+.++++|++++++.+ +..++++||+||+++|.++++.+|++|+++||+||+ T Consensus 298 ~i~v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~i~~~~~~~~~~~~~i~~~~~~Ir~e~~~~~~~~~l~~~~~~~G~s~~ 377 (518) T protein:vir:78 298 KIAASERMFRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPA 377 (518) T ss_pred eeeechhHhccCCCCCCCccccccCCCCceEEEecCcCCCCCccccceeeeecccChHHHHHHHHHHHHHHHHhhCCChh Confidence 999999999999999988888889999999999876432 235999999999999999999999999999999999 Q ss_pred ccccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC--CCCCCccceEEEeCCCccCCHHH Q lcl|Aclame:pro 377 TFSFDGRSMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFG--GEIPSAEHIGVDFDDGVFQDRSA 454 (517) Q Consensus 377 ~~~~~~~~~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~--~~~~~~~~v~i~f~d~i~~d~~~ 454 (517) +||++ ++.+|||||++++++|++|+++|++.|+.+|++|+++|+++++.+.... ....+.++|+|+|+|++++|+++ T Consensus 378 tfg~~-~~~~TATei~s~~~~~~~t~~~~~~~~e~al~~l~~~i~~l~~~~~~~~~~~~~~~~~~v~i~f~D~i~~D~~~ 456 (518) T protein:vir:78 378 TFNLG-NREVKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNE 456 (518) T ss_pred hcCcc-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccCCCceeEEEEeCCCCCCCHHH Confidence 99986 4679999999999999999999999999999999999999988764332 23445678999999999999999 Q ss_pred HHHHHHHHHhcCCCCHHHHHHhh-CCCCHHHHHHHHHHHHHhccccCCC-CCccccCCCCCC Q lcl|Aclame:pro 455 LLRFYGQAKTFGFIPTVEAIQRI-FKVPKKTAEQWLEEIRKDQIELDPV-TISQRAQKRMFG 514 (517) Q Consensus 455 ~~~~~~~~~~~G~~S~~~~l~~~-~~~~eeea~~el~~i~~E~~~~~~~-~~~~~~~~~~~G 514 (517) +++++++++++|+||++++|+++ ++|+|+||++|++||++|++..+++ ++.....+..+| T Consensus 457 ~~~~~~~~v~aGimS~e~~i~~~~~~~~deea~~e~~ri~~E~~~~~~~~p~~~~g~~~~~g 518 (518) T protein:vir:78 457 LSSTLNNMNSALAMSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) T ss_pred HHHHHHHHHhcCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhcccCCCCCccccCCCCCCC Confidence 99999999999999999999875 5899999999999999999876543 333333444444 No 10 >protein:vir:5961 Length: 503 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:125 # MgeName: SPP1 # Cross-refs: genbank:acc:NP_690661;genbank:geneid:6329220;genbank:gi:22855055;interpro:IPR006428;uniprot:P54309;genbank:GeneID:955279 Probab=100.00 E-value=4.7e-57 Score=329.39 Aligned_cols=461 Identities=12% Similarity=0.059 Sum_probs=309.1 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccc---------cCcccccccc Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINS---------QGKIQERDYM 71 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~---------~~~~~~~~~~ 71 (517) |.+...++........ .....|.+.. ......++.++.+||.|+++..+.... ....+...+. T Consensus 13 ~~~~~~~~~~~~~~~~----~~~~~i~~~i----~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~~~~ri 84 (503) T protein:vir:59 13 EELNEIIVESAKEIAE----PDTTMIQKLI----DEHNPEPLLKGVRYYMCENDIEKKRRTYYDAAGQQLVDDTKTNNRT 84 (503) T ss_pred HhHHHhhhhhhhhccc----hhHHHHHHHH----HhhcHHHHHHHHHHhccccchhhccchhccccccccccccccccee Confidence 4444444444432111 1112222111 112346788999999999865432211 1112223467 Q ss_pred ccChHHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe-C Q lcl|Aclame:pro 72 TLNLRKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD-N 150 (517) Q Consensus 72 ~ln~~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d-~ 150 (517) ++|+++.|+...|++||++++++++++. ..+++|+.+++ |+|...+.+++..++.+|.+|+++|+| + T Consensus 85 ~~n~~~~ivd~~~~yl~g~~~~~~~~d~-----------~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~d 152 (503) T protein:vir:59 85 SHAWHKLFVDQKTQYLVGEPVTFTSDNK-----------TLLEYVNELAD-DDFDDILNETVKNMSNKGIEYWHPFVDEE 152 (503) T ss_pred ecchHHHHHHHHHhhhhcCCeeeccCcH-----------HHHHHHHHHHh-cCHHHHHHHHHHHHhhCCeEEEEEeecCC Confidence 8999999999999999999999987553 45677887765 689999999999999999999999997 5 Q ss_pred CeeEEEEEcCCeEEEEEEcCC-ceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeec-CCccccCc Q lcl|Aclame:pro 151 GEIEFSWALANAFYPLRSNSN-GISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKS-DNEGEIGK 228 (517) Q Consensus 151 g~~~i~~v~a~~~~P~~~~~~-~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~-~~~~~lG~ 228 (517) |++++.+++|.+++|++.+.. +...+++.++. ......+.++++|+|+.+.+. . |.. ++...++. T Consensus 153 g~~~i~~~~p~~~~~i~d~~~~~~~~~~ir~~~--~~~~~~~~~~~~evy~~~~i~---------~--~~~~~~~~~~~~ 219 (503) T protein:vir:59 153 GEFDYVIFPAEEMIVVYKDNTRRDILFALRYYS--YKGIMGEETQKAELYTDTHVY---------Y--YEKIDGVYQMDY 219 (503) T ss_pred CceEEEEEccceeEEEEeCCCCCceEEEEEEEE--EecCCCceEEEEEEEeCCcEE---------E--EEEcCCcccccc Confidence 899999999999999976543 44444443332 233344567789999886532 1 221 12222222 Q ss_pred ccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeecchH Q lcl|Aclame:pro 229 RIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRTVFVSDV 308 (517) Q Consensus 229 ~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~ 308 (517) ..+.......+......++++++||++|+++ +.|.|+|++++++||+||.++|+++++++....+++|... T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~vPiv~~~nn---------~~~~sd~~~~~~liDa~d~~~s~~~~~~~~~~~~~~v~~g 290 (503) T protein:vir:59 220 SYGENNPRPHMTKGGQAIGWGRVPIIPFKNN---------EEMVSDLKFYKDLIDNYDSITSSTMDSFSDFQQIVYVLKN 290 (503) T ss_pred cccccccccceeecceeccCCccceEEecCC---------CCCCcchhhhHHHHHHHHHHHHHHHHHHHHhcCCeeEeec Confidence 2222111111222334578888999998752 4699999999999999999999999999888777777332 Q ss_pred HhccCCCCcccccCccCCcccceeeeecCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchH Q lcl|Aclame:pro 309 MLRTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTA 388 (517) Q Consensus 309 ~l~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TA 388 (517) + .......|..+...+..+..+ +++.++.++++++.+++...++.+.+.|...++.+.-.+ ...+|..|| T Consensus 291 ~--------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~-~~~~~~~Sg 360 (503) T protein:vir:59 291 Y--------DGENPKEFTANLRYHSVIKVS-GDGGVDTLRAEIPVDSAAKELERIQDELYKSAQAVDNSP-ETIGGGATG 360 (503) T ss_pred C--------Cccccchhhhhhhcccceecc-CCCcceeEeccCCHHHHHHHHHHHHHHHHHHhcccCCCc-ccccccccH Confidence 2 111111233333444444433 334588899999999999999888887766664432222 122466789 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCC Q lcl|Aclame:pro 389 TEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFI 468 (517) Q Consensus 389 tei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~ 468 (517) ++++++.+.+.++++++++.|+.+|+++++.|+.++... .+.......+|+|.|+++++.|..+.++.+++++++|+| T Consensus 361 ~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~~i~~~~~~~--~~~~~~~~~~i~i~f~~~~p~d~~~~~~~~~kl~~~Gii 438 (503) T protein:vir:59 361 PALENLYALLDLKANMAERKIRAGLRLFFWFFAEYLRNT--GKGDFNPDKELTMTFTRTRIQNDSEIVQSLVQGVTGGIM 438 (503) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCcccccccceeEEeCCCCCCCHHHHHHHHHHHHhCCCC Confidence 999999999999999999999999999999999887642 222223445699999999999999999999999999999 Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHhccccCCC----------CCccccCCCCCCCCC Q lcl|Aclame:pro 469 PTVEAIQRIFKVPKKTAEQWLEEIRKDQIELDPV----------TISQRAQKRMFGDEE 517 (517) Q Consensus 469 S~~~~l~~~~~~~eeea~~el~~i~~E~~~~~~~----------~~~~~~~~~~~G~ee 517 (517) |.+|++.+++++ ++ +++|++||++|+.+.... ..++....+..++.| T Consensus 439 S~et~l~~l~~v-~d-~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (503) T protein:vir:59 439 SKETAVARNPFV-QD-PEEELARIEEEMNQYAEMQGNLLDDEGGDDDLEEDDPNAGAAE 495 (503) T ss_pred chHHHHHhCCCC-CC-HHHHHHHHHHHHHHHHhhhccccCccCCCCCCCcCCCCCCccc Confidence 999999776444 33 678899998877432111 111111122222222 No 11 >protein:vir:105461 Length: 470 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1502 # MgeName: KC5a # Cross-refs: genbank:acc:YP_529871;genbank:gi:90592611;genbank:GeneID:3974525 Probab=100.00 E-value=2.1e-56 Score=325.81 Aligned_cols=447 Identities=15% Similarity=0.146 Sum_probs=308.4 Q ss_pred chHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccc----------cCcccccccc Q lcl|Aclame:pro 2 KVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINS----------QGKIQERDYM 71 (517) Q Consensus 2 ~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~----------~~~~~~~~~~ 71 (517) =-++.|++++.+.... | .+...++.+.++||.|+++.+..... ....+...+. T Consensus 1 ~~~~~~~~~i~~~~~~-----------~------~~~~~~~~~~~~Yy~g~~~I~~~~~~~~~~~~~~~~~~~~~~~~ki 63 (470) T protein:vir:10 1 MELDALKKLIQNTSTS-----------R------NDLINNYKQAVNYYENKTDITTRNNGKAKLNKEGKKDPLRSADNRI 63 (470) T ss_pred CchHHHHHHHHHHHHH-----------H------HHHHHHHHHHHHHhccccchhccccchhcccccccccccccCCccc Confidence 1234445555432221 1 23346778888999999865432211 1112334578 Q ss_pred ccChHHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe-C Q lcl|Aclame:pro 72 TLNLRKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD-N 150 (517) Q Consensus 72 ~ln~~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d-~ 150 (517) ++|+++.|+...+++||++|+++++++. ..++.|++++++ +|...+.+++..++.+|.+|+++|+| + T Consensus 64 ~~n~~k~Iv~~~~~yl~G~p~~~~~~d~-----------~~~~~l~~~~~~-~~~~~~~~l~~~~~~~G~a~~~~y~d~~ 131 (470) T protein:vir:10 64 PSNFYQLLVDQEAGYVASVFPDIDVGKD-----------ADNKKIIDVLGD-DRALTLNGLLVDSSNAGRAWLHYWIDED 131 (470) T ss_pred ccchHHHHHHhhhhheeccceeeecCch-----------HHHHHHHHHHhh-hHHHHHHHHHHHHhhcCeeEEEEEecCC Confidence 8999999999999999999999988653 345678888875 68888999999999999999999998 5 Q ss_pred CeeEEEEEcCCeEEEEEEcCC-ceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcc Q lcl|Aclame:pro 151 GEIEFSWALANAFYPLRSNSN-GISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKR 229 (517) Q Consensus 151 g~~~i~~v~a~~~~P~~~~~~-~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~ 229 (517) |.+++.+++|.+++|++.++. +...+++.++ ......+..++++.|+|+.+... + .... ++...+... T Consensus 132 ~~~~~~~~~p~~~~~v~d~~~~~~~~a~ir~y-~~~~~~~~~~~~~~e~yt~~~~~------~---~~~~-~~~~~~~~~ 200 (470) T protein:vir:10 132 GNFRYGIIQPDQITPIYATTLDNKLLGILRSY-KQLDPDSGKYFTVHEYWTDKEAQ------F---FRTN-ATDSTVIEP 200 (470) T ss_pred CceEEEEEcccceEEEEcCCCCCceEEEEEEE-EeeecCCceEEEEEEEEcCCcEE------E---EEee-cCcceeccc Confidence 889999999999999976553 4445554443 33344455667788988765321 1 1111 111111111 Q ss_pred c---cccc---ccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhcccee Q lcl|Aclame:pro 230 I---PLEE---LYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRTV 303 (517) Q Consensus 230 v---~l~~---~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i 303 (517) . +... ..+........+++++.||++|+|+ +.|+|+|+++++|||+||.++|++++.++.....+ T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn---------~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~ 271 (470) T protein:vir:10 201 YNIITSYDLSAGYETGQSNTLKHNFGRVPFIEFSKN---------KYRLPELNKYKGLIDAYDDIYNGFINDLDDVQTVI 271 (470) T ss_pred cccccccccccccccccccccccCCCeeeEEEeecC---------CCCCCchhHHHHHHHHHHHHHHHHHHHHHHhcCcc Confidence 1 1111 1122223345578888999999753 46999999999999999999999999997444444 Q ss_pred ecchHHhccCCCCcccccCccCCcccceeeeecC----CCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccc Q lcl|Aclame:pro 304 FVSDVMLRTVPDESGMPPPQVFDPDVNVYKSIRM----GTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFS 379 (517) Q Consensus 304 ~v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~~----~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~ 379 (517) +|-.++ . ......+..+...+..+.. ++.+++++.++++++++++...++.+.+.|...++.+. ++ T Consensus 272 lvl~g~----~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~L~~~I~~~s~~p~--~~ 341 (470) T protein:vir:10 272 LVLTNY----G----GADLHQFMNDLRKYKSIKINNTGNGDNSGVDKLQIDIPVEARDDALKITRKNIFLFGQGID--PA 341 (470) T ss_pred eeeecC----C----ccccchhhhhhhhcCeEeccCCCCCcCceeEEEeecCChHHHHHHHHHHHHHHHHHhCCCC--CC Confidence 442211 1 0001112233333333332 23456799999999999999999999999888776553 34 Q ss_pred cCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHH Q lcl|Aclame:pro 380 FDGRSMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFY 459 (517) Q Consensus 380 ~~~~~~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~ 459 (517) +.+.|..|+.+++++.+.+.++++++++.|+++|++++++|+.++.. ...+...|.|+|++.+|.|..+.++++ T Consensus 342 ~~~~gn~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~~i~~~l~~------~~~d~~~i~i~f~~~~p~d~~e~~~~~ 415 (470) T protein:vir:10 342 NFESSNASGVAIKMLYSHLELKAAKTQTYFEHAINELVRAIMRYLNF------SDADKRHISQHWTRTKVEDSLTKAQIV 415 (470) T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------cCcccceeeEEeccCCCCCHHHHHHHH Confidence 44557889999999999999999999999999999999999986543 223446799999999999999999988 Q ss_pred HHHHhcCCCCHHHHHHhhCCCCHHHHHHHHHHHHHhccccCCCCCcccc-CCCCCCCCC Q lcl|Aclame:pro 460 GQAKTFGFIPTVEAIQRIFKVPKKTAEQWLEEIRKDQIELDPVTISQRA-QKRMFGDEE 517 (517) Q Consensus 460 ~~~~~~G~~S~~~~l~~~~~~~eeea~~el~~i~~E~~~~~~~~~~~~~-~~~~~G~ee 517 (517) +++ +|+||.+|++.++ |++++ +++|++||++|+.+..+...+... ..+..+||| T Consensus 416 ~~~--~g~iS~et~l~~~-p~v~D-~~~E~eri~~E~~e~~~~~~~~~~~~~~~~dde~ 470 (470) T protein:vir:10 416 STV--ANYSSKEAVAKAN-PIVDD-WQQELKDLAKDKEENDPYSNQADELNGKGVNDEQ 470 (470) T ss_pred HHH--hccCcHHHHHHhC-CCCCC-HHHHHHHHHHHHHHHHHhhccccccCCCCCCCCC Confidence 776 5999999998765 65554 778999999998776554433322 233334444 No 12 >protein:vir:96240 Length: 511 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1607 # MgeName: 69 # Cross-refs: genbank:acc:YP_239567;genbank:gi:66395299;genbank:GeneID:5132789 Probab=100.00 E-value=6.4e-54 Score=312.20 Aligned_cols=452 Identities=9% Similarity=0.004 Sum_probs=302.0 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCccccccc-ccCccccccccccChHHHH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYIN-SQGKIQERDYMTLNLRKLS 79 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~-~~~~~~~~~~~~ln~~~~i 79 (517) +...+.|+++|.+.. .....++.++++||.|+++.++... ...+.+.+.+.++|+|+.| T Consensus 39 ~~~~~~i~~~i~~~~--------------------~~~~~r~~~l~~Yy~g~~~i~~~~~~~~~~~~~~~ki~~n~~k~I 98 (511) T protein:vir:96 39 LQNVNEVSKYIEHHM--------------------DYQRPRLKVLSDYYEGKTKNLVELTRRKEEYMADNRVAHDYASYI 98 (511) T ss_pred hccHHHHHHHHHHHH--------------------HhhHHHHHHHHHHhcccCccccccCcCcccccCcceeecchHHHH Confidence 222333444443211 1224578889999999988765433 2333444567889999999 Q ss_pred HHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe-CCeeEEEEE Q lcl|Aclame:pro 80 ADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD-NGEIEFSWA 158 (517) Q Consensus 80 ~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d-~g~~~i~~v 158 (517) +...+++|+++|++|++++. ..++.|+.++++|+|...+.+++..|+.+|.+|+++|+| +|.+++.++ T Consensus 99 v~~~~~yl~g~p~~~~~~~~-----------~~~~~l~~~~~~n~~~~~~~~~~~~~~i~G~a~~~vy~ded~~~~i~~~ 167 (511) T protein:vir:96 99 SDFINGYFLGNPIQYQDDDK-----------DVLEAIEAFNDLNDVESHNRSLGLDLSIYGKAYELMIRNQDDETRLYKS 167 (511) T ss_pred HHHHHhhhccCCceeecCch-----------HHHHHHHHHHhhcCHHHHHHHHHHHHHhcCeeEEEEEeCCCCceEEEEE Confidence 99999999999999987653 356889999999999999999999999999999999998 589999999 Q ss_pred cCCeEEEEEEcCC-ceEEEEEEEEEEE-EecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCccccccccc Q lcl|Aclame:pro 159 LANAFYPLRSNSN-GISEGVMKSVTTK-VIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELY 236 (517) Q Consensus 159 ~a~~~~P~~~~~~-~~~~~a~~~~~~~-~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~ 236 (517) +|.+++|++.+.. +...+++.++... .++.......++|+|+.+++ |+ |...+.. ...+.. T Consensus 168 ~p~~~~~vydd~~~~~~~~~vr~~~~~~~d~~~~~~~~~~~iyt~~~i------~~-----~~~~~~~----~~~~~~-- 230 (511) T protein:vir:96 168 DAMSTFVIYDNTIERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGV------YR-----YLTSRTN----GLKLTP-- 230 (511) T ss_pred ccceeEEEEcCCCCCceEEEEEEEEeeeccccccceEEEEEEEeCCcE------EE-----EEecCCC----cccccc-- Confidence 9999999976654 3333333333222 22223333445677765431 11 2222111 111110 Q ss_pred CCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeecchHHhccCCCC Q lcl|Aclame:pro 237 EGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRTVFVSDVMLRTVPDE 316 (517) Q Consensus 237 ~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~l~~~~~~ 316 (517) .......++++.+||++|+|+ +.|+|+|++++++||+||.++|++++.++....++.|...+...+... T Consensus 231 --~~~~~~~~~~~~vPvv~~~nn---------~~g~gd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~g~~~~~~~~ 299 (511) T protein:vir:96 231 --RENGFESHSFERMPITEFSNN---------ERRKGDYEKVITLIDLYDNAESDTANYMSDLNDAMLLIKGNLNLDPVE 299 (511) T ss_pred --cccccccccCCceeeEEecCC---------CCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhCceeeeecCccCCchh Confidence 011223467788899998752 468999999999999999999999999987777777755543222211 Q ss_pred cc-cccCccCCcccceeeeec--CCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHHHH Q lcl|Aclame:pro 317 SG-MPPPQVFDPDVNVYKSIR--MGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVS 393 (517) Q Consensus 317 ~~-~~~~~~fd~~~~~y~~~~--~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a 393 (517) .. ......+......+.... ..++++.++.+++++++++....++.+.+.|...++.+.-+++ ..+|..||.++++ T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~L~~~I~~~s~~p~~~~~-~~~~n~Sg~Al~~ 378 (511) T protein:vir:96 300 VRKQKEANVLFLEPTVYADSEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNMKDD-NFSGTQSGEAMKY 378 (511) T ss_pred hcccccccceecccccccccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCcccccc-cccccchHHHHHH Confidence 11 111111111111111111 1234556889999999999999999988888887776543322 2236678999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCCHHHH Q lcl|Aclame:pro 394 ENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTVEA 473 (517) Q Consensus 394 ~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~~~ 473 (517) +.+.+.+++..+++.|+.+|++++++|+.+..... ..........++|+|++++|.|..++++.+.++ +|+||.+|+ T Consensus 379 ~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~-~~~~~~d~~~i~~~f~~~~p~n~~e~~~~~~kl--~G~iS~et~ 455 (511) T protein:vir:96 379 KLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTW-SIDANKDFNTVRYVYNRNLPKSLIEELKAYIDS--GGKISQTTL 455 (511) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcccccccccceEEeCCCCCCCHHHHHHHHHHH--hccCChHHH Confidence 99999999999999999999999999998765421 111122334789999999999999999988876 599999999 Q ss_pred HHhhCCCCHHHHHHHHHHHHHhccccCCC---CCccccCCC-----------CCCCCC Q lcl|Aclame:pro 474 IQRIFKVPKKTAEQWLEEIRKDQIELDPV---TISQRAQKR-----------MFGDEE 517 (517) Q Consensus 474 l~~~~~~~eeea~~el~~i~~E~~~~~~~---~~~~~~~~~-----------~~G~ee 517 (517) +..++++++ +++|++||++|+.+..+. ..+..+... ...++| T Consensus 456 l~~l~~v~D--~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (511) T protein:vir:96 456 MSLFSFFQD--PELEVKKIEEDEKESIKKAQKGIYKDPRDINDDEQDDDTKDTVDKKE 511 (511) T ss_pred HHhCCCCCC--HHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCcccccccccC Confidence 976644443 678999999886432111 011111111 111111 No 13 >protein:vir:4898 Length: 502 # NCBI annotation: gp502 # Family: family:all:125 # MgeID: mge:107 # MgeName: Sfi11 # Cross-refs: genbank:acc:NP_056676;genbank:gi:9635011;genbank:GeneID:1262662 Probab=100.00 E-value=1.6e-53 Score=310.07 Aligned_cols=457 Identities=9% Similarity=-0.001 Sum_probs=302.1 Q ss_pred CchHHHHHHHHHHHHH-Hhhcccchh------------hhccccCcCCHHHHHHHHHHHHHhcCCCccc-ccccccCccc Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGY-ALSGQTLKS------------INDHEKINIDPNELARIERNLRQYEGDYPQV-EYINSQGKIQ 66 (517) Q Consensus 1 m~~~~~ik~~~~~~~~-~~~~~~~~~------------~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~-~~~~~~~~~~ 66 (517) =+.-..++--+.+-.+ .+..+.++. |..|. .....|+.++++||.|+++.+ +........+ T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~h~-----~~~~~rl~~l~~yY~g~~~~i~~~~~~~~~~~ 85 (502) T protein:vir:48 11 TGQDLVLNLRFHRESRIRYRADNLEELMVNNWELLKNFINHHK-----LRQAPRIQELLDYARGENHDVLKSGRRKDNEM 85 (502) T ss_pred chhHHHhhcccChhHHhhhcccchhhhccccHHHHHHHHHHHH-----HHHHHHHHHHHHHhcCCCcccccccccccccc Confidence 0011111111111110 000011111 11121 234568899999999987654 3333333444 Q ss_pred cccccccChHHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEE Q lcl|Aclame:pro 67 ERDYMTLNLRKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRP 146 (517) Q Consensus 67 ~~~~~~ln~~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~ 146 (517) ...+.++|+|+.|+...+++|++.|+++++++.. ..+..++.|++++++|+|...+.+++..++++|.+|+++ T Consensus 86 ~~~ki~~n~~k~Ivd~~~~yl~g~p~~~~~~d~~-------~~~~~~~~l~~~~~~N~~~~~~~~~~~~~~~~G~a~~~v 158 (502) T protein:vir:48 86 ADKRAVHNYGRMISKFKTGYLAGNPIRVEYDDNE-------DNSQNDDAIKRIGRINDIDTHNRNLIRDLSQTGRAYEVI 158 (502) T ss_pred ccceeecchHHHHHHHHhhhhcccCeeEecCCcc-------chhHHHHHHHHHHhhcCHhHHHHHHHHHHhhcCeEEEEE Confidence 4567889999999999999999999999987642 234577889999999999999999999999999999999 Q ss_pred EEe-CCeeEEEEEcCCeEEEEEEcC-CceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCcc Q lcl|Aclame:pro 147 YVD-NGEIEFSWALANAFYPLRSNS-NGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEG 224 (517) Q Consensus 147 ~~d-~g~~~i~~v~a~~~~P~~~~~-~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~ 224 (517) |.| +|++++.+++|.+++|++.+. .+...+++.++... ..++. ++.+|.|+.+.+ |+ |...+. T Consensus 159 ~~dedg~~~i~~~~p~~~~~vydd~~~~~~~~~ir~~~~~-~~~~~--~~~~~iyt~~~i------~~-----~~~~~~- 223 (502) T protein:vir:48 159 YRSEYDETRIKRLSPLETFVIYDNSLEDNSIAAVRYYNRG-TLQNA--KDVVEIYTNQHI------YT-----LDASDS- 223 (502) T ss_pred EeCCCCceEEEEEcccceEEEEcCCCCCceEEEEEEEEEe-ecCCc--EEEEEEEeCCeE------EE-----EEeCCc- Confidence 998 689999999999999997654 24444444433332 22222 234677765421 22 221111 Q ss_pred ccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceee Q lcl|Aclame:pro 225 EIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRTVF 304 (517) Q Consensus 225 ~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~ 304 (517) ... ....-++++++||++|+|+ +.|+|+|++++++||++|.++|++++.++....++. T Consensus 224 --~~~-----------~~~~~~~~g~vPvv~~~nn---------~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~l 281 (502) T protein:vir:48 224 --FNE-----------ISVTPHAFGTVPITEFLNN---------ADGIGDYETELYLIDLYDSAESDTANHMSDMADAIL 281 (502) T ss_pred --eee-----------ccceecCCCccceEEecCC---------CCCCCchhhhHHHHHHHHHHHHHHHHHHHHhcCcee Confidence 000 1123356788889988642 579999999999999999999999999987777776 Q ss_pred cchHHhccCCCCcccccCccCCcccceeeee----cCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCcccccc Q lcl|Aclame:pro 305 VSDVMLRTVPDESGMPPPQVFDPDVNVYKSI----RMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSF 380 (517) Q Consensus 305 v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~----~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~ 380 (517) |...+.....+..+. .+....-++... .+..++..++.++++++++++...++.+.+.|...++.+.-+++ T Consensus 282 v~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~L~~~I~~~s~~p~~~~~- 356 (502) T protein:vir:48 282 AIYGDLALPQGMQAS----DMKRTRLMQLKPPKSADGKEGTVKAEYLTKSYDVSGAEAYKTRLNKDIHVFTNTPDMSDN- 356 (502) T ss_pred eeecCcccccccchh----hhhhcceeeccccccccccccCcceeEeeecCCHHHHHHHHHHHHHHHHHHhCCCCcCcc- Confidence 633332111111111 111111111111 12234557889999999999999999999998887776644433 Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHH Q lcl|Aclame:pro 381 DGRSMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYG 460 (517) Q Consensus 381 ~~~~~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~ 460 (517) ..+|..||.+++++.+.+.+++..+++.|+.+|.+++++|+.+..... .........|+|+|++.++.|..++++.+. T Consensus 357 ~~~~n~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~--~~~~~d~~~i~i~f~~~~p~d~~e~a~~~~ 434 (502) T protein:vir:48 357 HFSGNASGEALKYKLFGLDQDRVDTQSQFTQGLKRRYRLAARIGSLVN--EFKDFDESRLKITFTPNLPKSLYEQVSILN 434 (502) T ss_pred ccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--cccccccccceEEeCCCCCcCHHHHHHHHH Confidence 224667899999999999999999999999999999999998876432 222234456999999999999999999888 Q ss_pred HHHhcCCCCHHHHHHhhCCCCHHHHHHHHHHHHHhccccCC----CCCccccCCCCCCCCC Q lcl|Aclame:pro 461 QAKTFGFIPTVEAIQRIFKVPKKTAEQWLEEIRKDQIELDP----VTISQRAQKRMFGDEE 517 (517) Q Consensus 461 ~~~~~G~~S~~~~l~~~~~~~eeea~~el~~i~~E~~~~~~----~~~~~~~~~~~~G~ee 517 (517) ++ +|++|.+|+++.+..+++ +++|++||++|+.+.+. ...+.....+.++.+| T Consensus 435 kl--~g~iS~et~l~~l~~v~D--~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~d~~~e 491 (502) T protein:vir:48 435 DL--GGQVSQETALSLSGLVEN--PTEELDKINEESSKIDFKGYPSYFYDNVGKYTDEVKE 491 (502) T ss_pred HH--hccCcHHHHHHhCCCCCC--HHHHHHHHHHHHHhhhhhcccccccccccccCCCccC Confidence 87 499999999887644443 67899999988754222 1111111122222122 No 14 >protein:vir:2732 Length: 501 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:58 # MgeName: O1205 # Cross-refs: genbank:acc:NP_695105;genbank:gi:23455874;genbank:GeneID:955614 Probab=100.00 E-value=1.9e-53 Score=309.59 Aligned_cols=442 Identities=10% Similarity=0.023 Sum_probs=302.0 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccc-cccCccccccccccChHHHH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYI-NSQGKIQERDYMTLNLRKLS 79 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~-~~~~~~~~~~~~~ln~~~~i 79 (517) +.-++.|+++|.+.- +....++.++.+||.|+++.+..+ ......+...+.++|+|+.| T Consensus 38 ~~~~~~l~~~i~~~~--------------------~~~~~r~~~l~~yY~g~~~~i~~~~~~~~~~~~~~ki~~n~~k~I 97 (501) T protein:vir:27 38 VNNWELLKNFINHHK--------------------LRQAPRIQELLDYARGENHDVLQFGRRKDREMADKRAVHNYGRMI 97 (501) T ss_pred cccHHHHHHHHHHHH--------------------HHHHHHHHHHHHHhcCCCccccccCccCccccccceeccchHHHH Confidence 344444555443211 234568899999999997665333 23333444557889999999 Q ss_pred HHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe-CCeeEEEEE Q lcl|Aclame:pro 80 ADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD-NGEIEFSWA 158 (517) Q Consensus 80 ~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d-~g~~~i~~v 158 (517) ++..+++|+++++++++++... .+.++++|+.+++.|+|...+.+++..|+++|.+|+++|+| +|++++.++ T Consensus 98 vd~~~~yl~g~p~~~~~~d~~~-------~~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~vy~ded~~~~i~~~ 170 (501) T protein:vir:27 98 SKFKTGYLAGNPIRVEYDDNDN-------NSQNDDTIKRIGRINDIDSHNRTLIRDLSQTGRAYEVIYRNEYDETRIKRL 170 (501) T ss_pred HHHHhhhhcccCeeEecCCccc-------hHHHHHHHHHHHHhcChhHHHHHHHHHHhhCCeEEEEEEeCCCCceEEEEE Confidence 9999999999999999876432 34577889999999999999999999999999999999998 578999999 Q ss_pred cCCeEEEEEEcCC-ceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccccC Q lcl|Aclame:pro 159 LANAFYPLRSNSN-GISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYE 237 (517) Q Consensus 159 ~a~~~~P~~~~~~-~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~ 237 (517) +|.+++|++.+.. +...+++.++... ..++. .+++|+|+.+. .|+ |...+. +..+ T Consensus 171 ~p~~~~~v~d~~~~~~~~~~ir~~~~~-~~~~~--~~~~~vyt~~~------v~~-----~~~~~~---~~~~------- 226 (501) T protein:vir:27 171 NPLETFVIYDNSLEDNSIAAVRYYNRG-TLQNA--KDVVEIYTNEH------IYT-----LDASDD---FNEI------- 226 (501) T ss_pred ccceeEEEecCCCCCceEEEEEEEEee-ecCCc--EEEEEEEeCCe------EEE-----EEeCCc---eeec------- Confidence 9999999976543 4444444333322 22222 34467766542 122 221111 0110 Q ss_pred CCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeecchHHhccCCCCc Q lcl|Aclame:pro 238 GMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRTVFVSDVMLRTVPDES 317 (517) Q Consensus 238 ~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~l~~~~~~~ 317 (517) ...-++++++|+++|+|+ +.|+|+|++++++||++|.++|++++.++....++.+...+.....+.. T Consensus 227 ----~~~~~~~g~vPvv~~~nn---------~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~~v~~g~~~~~~~~~ 293 (501) T protein:vir:27 227 ----SVTTHAFGTVPITEFLNN---------VDGIGDYETELYLIDLYDSAESDTANHMSDMADAILAIYGDLALPKGMQ 293 (501) T ss_pred ----cccccCCCcccEEEecCC---------CCCCCchhhhHHHHHHHHHHHHHHHHHHHHhcCceeeeecCccCCcccc Confidence 112356788889999752 5799999999999999999999999999877777776444322111111 Q ss_pred ccccCccCCcccceeee----ecCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHHHH Q lcl|Aclame:pro 318 GMPPPQVFDPDVNVYKS----IRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVS 393 (517) Q Consensus 318 ~~~~~~~fd~~~~~y~~----~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a 393 (517) +.. +....-+... ..+..++..++.+++++.+++....++.+.+.|...++.+.-+++ ..++..||.++++ T Consensus 294 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~-~~~~n~Sg~Al~~ 368 (501) T protein:vir:27 294 ASD----MKRTRLMQLKPPKSADGKEGTVKAEYLTKSYDVSGAEAYKTRLNRDIHIFTNIPDMSDT-NFSGNTSGEALKY 368 (501) T ss_pred hhh----hhhcCceeecccccccCCCCCcceeeeeccCCHHHHHHHHHHHHHHHHHHhCCcccCcc-ccccCchHHHHHH Confidence 111 1111011111 112234456888999999988888888888888777765433322 2236678999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCCHHHH Q lcl|Aclame:pro 394 ENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTVEA 473 (517) Q Consensus 394 ~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~~~ 473 (517) +.+.+.+++..+++.|+.+|++++++|+.+....+ .+.......|.|.|+++++.|..+.++.++++ +|++|.+|+ T Consensus 369 ~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~--~~~~~d~~~i~v~f~~~~p~n~~e~ad~~~kl--~g~iS~et~ 444 (501) T protein:vir:27 369 KLFGLDQDRVDTQSQFTQGLKRRYRLAARIGSLVN--EFKDFDESLLKITFTPNLPKSLNEQVSILTGL--GGQVSQETA 444 (501) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--cccccccccceEEeCCCCCcCHHHHHHHHHHH--hccCcHHHH Confidence 99999999999999999999999999998765432 22233445699999999999999999988876 599999999 Q ss_pred HHhhCCCCHHHHHHHHHHHHHhccccCCCCCc----c------ccCCCCCCCCC Q lcl|Aclame:pro 474 IQRIFKVPKKTAEQWLEEIRKDQIELDPVTIS----Q------RAQKRMFGDEE 517 (517) Q Consensus 474 l~~~~~~~eeea~~el~~i~~E~~~~~~~~~~----~------~~~~~~~G~ee 517 (517) +..++++++ +++|++||++|+.+.++.... . +......|+|. T Consensus 445 l~~l~~v~D--~~~E~eri~~E~~e~~~~~~~~~~~~~~~~~~d~~~~~~~d~~ 496 (501) T protein:vir:27 445 LSLSGLVES--PNEELDKINKEVSEIDFKGYSNDFNEHVGKYTDEVKETHTDDF 496 (501) T ss_pred HHhCCCCCC--HHHHHHHHHHHHHhhhHhhhcCccccccccccCCCCCCccccc Confidence 987765554 667899999887553322111 1 11111112222 No 15 >protein:vir:79043 Length: 479 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1861 # MgeName: phiC2 # Cross-refs: genbank:acc:YP_001110721;genbank:gi:134287338;genbank:GeneID:4955217 Probab=100.00 E-value=2.2e-53 Score=309.28 Aligned_cols=444 Identities=12% Similarity=0.102 Sum_probs=306.3 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccc---cC-----ccccccccc Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINS---QG-----KIQERDYMT 72 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~---~~-----~~~~~~~~~ 72 (517) |..-..+++++.+. +......++.++.+||.|+++.+..... ++ ..+...+.+ T Consensus 18 ~~~~~~~~~~i~~~-------------------~~~~~~~~~~~~~~yy~g~~~i~~~~~~~~~~~~~~~~~~~~~~ki~ 78 (479) T protein:vir:79 18 KESTINLVKVIEHY-------------------ILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAI 78 (479) T ss_pred cCChhHHHHHHHHH-------------------HhhhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceee Confidence 22233333333221 1122356789999999999865543211 11 112234678 Q ss_pred cChHHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe-CC Q lcl|Aclame:pro 73 LNLRKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD-NG 151 (517) Q Consensus 73 ln~~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d-~g 151 (517) +|+++.|+...|++|+++++++++++. ..++.|+.+++ |+|...+.++++.++++|.+|+++|+| +| T Consensus 79 ~~~~~~Ivd~~~~~l~g~p~~~~~~~~-----------~~~~~~~~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~ 146 (479) T protein:vir:79 79 NNYHKLLVDQKVGYSVGNPIVFNADDD-----------NLTKLLNDLLG-EEFDDTITELYLNASNKGVEWLHPYINRKG 146 (479) T ss_pred cchHHHHHHHHHhhhhcCCceeccCCH-----------HHHHHHHHHHh-cCHHHHHHHHHHHHHhcCeEEEEEEeCCCC Confidence 999999999999999999999987653 34566776665 789999999999999999999999998 57 Q ss_pred eeEEEEEcCCeEEEEEEcCC-ceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCccc Q lcl|Aclame:pro 152 EIEFSWALANAFYPLRSNSN-GISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRI 230 (517) Q Consensus 152 ~~~i~~v~a~~~~P~~~~~~-~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v 230 (517) ++++.+++|.+++|++.+.. +...+++.++..... .++...++|+|+.+.+. + |..... .....+ T Consensus 147 ~~~i~~~~p~~~~~v~d~~~~~~~~~~ir~y~~~~~--~~~~~~~~e~y~~~~i~---------~--~~~~~~-~~~~~~ 212 (479) T protein:vir:79 147 EFKYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDI--DGNKIKRVEYYTENDIT---------Y--FIERGN-SFIQEF 212 (479) T ss_pred ceEEEEEccceeEEEEeCCCCCceEEEEEEEEEeec--CCceEEEEEEEeCCcEE---------E--EEecCC-cccccc Confidence 89999999999999965543 334444443333222 22334568988876421 1 221111 111111 Q ss_pred ccccc--cCCC-----CcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhcccee Q lcl|Aclame:pro 231 PLEEL--YEGM-----QEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRTV 303 (517) Q Consensus 231 ~l~~~--~~~l-----~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i 303 (517) ..... ...+ ......++++++||++|+|+ ++|.|+|++++++||++|.++|++++.++.....+ T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~nn---------~~g~sd~~~v~~liDa~d~~~S~~~~~~~~~~~~~ 283 (479) T protein:vir:79 213 LYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNN---------EKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVI 283 (479) T ss_pred cccccccccccccccccccccccCCCcccEEEecCC---------CCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCce Confidence 11110 0001 11223467788889988652 56999999999999999999999999998776666 Q ss_pred ecchHHhccCCCCcccccCccCCcccceeeeecCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCC Q lcl|Aclame:pro 304 FVSDVMLRTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGR 383 (517) Q Consensus 304 ~v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~ 383 (517) .|..++ . ......|..+.+....+..+ +++.++.++++++.+++...++.+.+.|...++... ++++.. T Consensus 284 ~v~~g~----~----~~~~~~~~~~~~~~~~i~~~-~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~--~~~~~~ 352 (479) T protein:vir:79 284 YVLKEY----P----GTSLQEFIDNIRYYKSIKVD-GGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVN--PESQNT 352 (479) T ss_pred eeeecC----C----ccccccchhhhhhccceecC-CCCcceEEeccCCHHHHHHHHHHHHHHHHHHhCccc--cccccc Confidence 663222 1 11111133333444445543 344688999999999999999999988877775543 445556 Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHH Q lcl|Aclame:pro 384 SMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAK 463 (517) Q Consensus 384 ~~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~ 463 (517) |..||++++++.+.+.++++.+++.|+.+|+++++.|+.++.. .++...+..+|+|.|+++++.|..+.++++.++ T Consensus 353 gn~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~---~~~~~~~~~~i~i~f~~~~p~~~~~~a~~~~kl- 428 (479) T protein:vir:79 353 GDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKI---SGNKSYDYKTVQITFNHSMIINEAEKIDMAAKS- 428 (479) T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCCCccccccceEEeCCCCCcCHHHHHHHHHHH- Confidence 7789999999999999999999999999999999999987653 344555667899999999999999999988887 Q ss_pred hcCCCCHHHHHHhhCCCCHHHHHHHHHHHHHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 464 TFGFIPTVEAIQRIFKVPKKTAEQWLEEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 464 ~~G~~S~~~~l~~~~~~~eeea~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) +|+||.++++.+++++++ +++|++||++|+.+..+ ..+..++...++.|| T Consensus 429 -~g~iS~et~l~~l~~v~d--~~~E~~ri~~E~~~~~~-~~~~~~~~~~~~~~e 478 (479) T protein:vir:79 429 -TGIVSDETIVSNHPWVED--VNDELERLKKQEDTQKE-YDDLIPNNQDGVIDE 478 (479) T ss_pred -hccCcHHHHHHhCCCCCC--HHHHHHHHHHHHHHHHH-HHhccCcccCCCcCc Confidence 499999999987755544 67889999998865433 222333444555666 No 16 >protein:vir:99781 Length: 511 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1497 # MgeName: phiETA2 # Cross-refs: genbank:acc:YP_001004303;genbank:gi:122891757;genbank:GeneID:4712336 Probab=100.00 E-value=2.4e-53 Score=309.09 Aligned_cols=452 Identities=9% Similarity=0.017 Sum_probs=301.4 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCccccccc-ccCccccccccccChHHHH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYIN-SQGKIQERDYMTLNLRKLS 79 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~-~~~~~~~~~~~~ln~~~~i 79 (517) +.-.+.|+++|.+.. .....++.++.+||.|+++.++... ...+.+.+.+.++|+|+.| T Consensus 39 ~~~~~~i~~~i~~~~--------------------~~~~~r~~~l~~Yy~g~~~i~~~~~~~~~~~~~~~ki~~n~~k~I 98 (511) T protein:vir:99 39 LQNVNEVSKYIEHHM--------------------DYQRPRLKVLSDYYEGKTKNLVELTRRKEEYMADNRVAHDYASYI 98 (511) T ss_pred hccHHHHHHHHHHHH--------------------HhhHHHHHHHHHHhcccCccccccCcccccccCcceeecchHHHH Confidence 222333444443211 1124578889999999987664432 2333344567889999999 Q ss_pred HHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe-CCeeEEEEE Q lcl|Aclame:pro 80 ADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD-NGEIEFSWA 158 (517) Q Consensus 80 ~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d-~g~~~i~~v 158 (517) +...+++|+++|+++++++. ..++.|+.++++|+|...+.+++..|+++|.+|+++|+| +|++++.++ T Consensus 99 v~~~~~yl~g~p~~~~~~d~-----------~~~~~l~~~~~~n~~~~~~~~~~~~~~i~G~a~~~vy~ded~~~~i~~~ 167 (511) T protein:vir:99 99 SDFINGYFLGNPIQYQDDDK-----------DVLEAIEAFNDLNDVESHNRSLGLDLSIYGKAYELMIRNQDDETRLYKS 167 (511) T ss_pred HHHHHhhhcccCceeecCch-----------HHHHHHHHHHhhcCHhHHHHHHHHHHHhcCeeEEEEEeCCCCceEEEEE Confidence 99999999999999987653 457889999999999999999999999999999999997 689999999 Q ss_pred cCCeEEEEEEcCC-ceEEEEEEEEEEEE-ecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCccccccccc Q lcl|Aclame:pro 159 LANAFYPLRSNSN-GISEGVMKSVTTKV-IGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELY 236 (517) Q Consensus 159 ~a~~~~P~~~~~~-~~~~~a~~~~~~~~-~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~ 236 (517) +|.+++|++.+.. +...+++.++.+.. ++.......+.|+|+.+++ |+ |...+.. ...+.. T Consensus 168 ~p~~~~~vyd~~~~~~~~~~vr~~~~~~~~~~~~~~~~~~~vyt~~~i------~~-----~~~~~~~----~~~~~~-- 230 (511) T protein:vir:99 168 DAMSTFVIYDNTIERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGV------YR-----YLTSRTN----GLKLTP-- 230 (511) T ss_pred ccceeEEEEcCCCCCceEEEEEEEEeeecccCccceEEEEEEEeCCcE------EE-----EEecCCc----cccccc-- Confidence 9999999976543 33344443333322 2233333445677765431 11 2222111 111110 Q ss_pred CCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeecchHHhccCCCC Q lcl|Aclame:pro 237 EGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRTVFVSDVMLRTVPDE 316 (517) Q Consensus 237 ~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~l~~~~~~ 316 (517) .......++++.+|+++|+|+ +.|+|+|++++++||+||.++|++++.++....++.+-..+...+... T Consensus 231 --~~~~~~~~~~g~vPvv~~~nn---------~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~G~~~~~~~~ 299 (511) T protein:vir:99 231 --RENGFESHSFERMPITEFSNN---------ERRKGDYEKVITLIDLYDNAESDTANYMSDLNDAMLLIKGNLNLDPVE 299 (511) T ss_pred --cccccccCCCCccceEEecCC---------CCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcccCchh Confidence 011233467888899999752 469999999999999999999999999986666665533332111111 Q ss_pred c-ccccCccCCcccceeeeec--CCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHHHH Q lcl|Aclame:pro 317 S-GMPPPQVFDPDVNVYKSIR--MGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVS 393 (517) Q Consensus 317 ~-~~~~~~~fd~~~~~y~~~~--~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a 393 (517) . .......+......+.... ...++..++.++++++++++...++.+.+.|...++.+.-+++ ..+|..||.++++ T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~e~~~~~L~~~I~~~s~~P~~~~~-~~~gn~Sg~Alk~ 378 (511) T protein:vir:99 300 VRKQKEANVLFLEPTVYADSEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNMKDD-NFSGTQSGEAMKY 378 (511) T ss_pred hcccccccceecccccccccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCcccccc-cccccchHHHHHH Confidence 1 1110111111111122111 1234556888999999999999999988888777765443322 2236678999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCCHHHH Q lcl|Aclame:pro 394 ENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTVEA 473 (517) Q Consensus 394 ~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~~~ 473 (517) +.+.+.+++..+++.|+.+|.+++++|+.++....-. ........|+|.|++++|.|..+.++.+++++ |++|.+|+ T Consensus 379 ~~~~l~~ka~~k~~~~~~~l~~~~~li~~~~~~~~~~-~~~~~~~~i~i~f~~~~p~n~~e~~~~~~kl~--GiiS~et~ 455 (511) T protein:vir:99 379 KLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSI-DVSKDFNTVRYVYNRNLPKSLIEELKAYIDSG--GKISQTTL 455 (511) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccccccccceEEeCCCCCcCHHHHHHHHHHHh--ccCCHHHH Confidence 9999999999999999999999999999887643211 12223346899999999999999999888774 99999999 Q ss_pred HHhhCCCCHHHHHHHHHHHHHhccccCC------------CCCccccC--CCCCCCCC Q lcl|Aclame:pro 474 IQRIFKVPKKTAEQWLEEIRKDQIELDP------------VTISQRAQ--KRMFGDEE 517 (517) Q Consensus 474 l~~~~~~~eeea~~el~~i~~E~~~~~~------------~~~~~~~~--~~~~G~ee 517 (517) +..++++++ +++|++||++|+.+..+ ...++..+ +....++| T Consensus 456 l~~l~~v~D--~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~e 511 (511) T protein:vir:99 456 MSLFSFFQD--PELEVKKIEEDEKESIKKAQKNMYQDPRNINDDEQDDSTKDSIDKKE 511 (511) T ss_pred HHhCCCCCC--HHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCCCCCCcCcccccC Confidence 987755554 67899999988643211 11111111 12222222 No 17 >protein:vir:96494 Length: 501 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1620 # MgeName: 2972 # Cross-refs: genbank:acc:YP_238488;genbank:gi:66391764;genbank:GeneID:5176916 Probab=100.00 E-value=3.5e-53 Score=308.15 Aligned_cols=442 Identities=10% Similarity=0.014 Sum_probs=301.9 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCccc-ccccccCccccccccccChHHHH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQV-EYINSQGKIQERDYMTLNLRKLS 79 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~-~~~~~~~~~~~~~~~~ln~~~~i 79 (517) +.-.+.|+++|.+ |. .....++.++++||.|+++.+ +........+...+.++|+|+.| T Consensus 38 ~~~~~~i~~~i~~---------------~~-----~~~~~r~~~~~~yY~g~~~~i~~~~~~~~~~~~~~ri~~n~~k~I 97 (501) T protein:vir:96 38 VNNWELLKNFINH---------------HK-----LRQAPRIQELLDYARGENHDVLKSGRRKDNEMADKRAVHNYGRMI 97 (501) T ss_pred CChHHHHHHHHHH---------------HH-----HHHHHHHHHHHHHhcCCCCcccCccccCccccccceeecchHHHH Confidence 4444445555532 11 123457889999999987654 33333333444567889999999 Q ss_pred HHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe-CCeeEEEEE Q lcl|Aclame:pro 80 ADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD-NGEIEFSWA 158 (517) Q Consensus 80 ~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d-~g~~~i~~v 158 (517) ++..+++|+++++++++++.. ..+.++++|++++++|+|...+.+++..|+.+|.+|+++|+| +|.+++.++ T Consensus 98 vd~~~~yl~g~p~~~~~~~~~-------~~~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~dedg~~~i~~~ 170 (501) T protein:vir:96 98 SKFKTGYLAGNPIRVEYDDND-------DNSQNDDAIKRIGRINDLDSLNRTLIRDLSQTGRAYEVIYRSEYDETRIKRL 170 (501) T ss_pred HHHHhhhhcccCeeEeeCCcc-------chhHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCeEEEEEEEcCCCceEEEEE Confidence 999999999999999987642 235678899999999999999999999999999999999998 689999999 Q ss_pred cCCeEEEEEEcCC-ceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccccC Q lcl|Aclame:pro 159 LANAFYPLRSNSN-GISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYE 237 (517) Q Consensus 159 ~a~~~~P~~~~~~-~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~ 237 (517) +|.+++|++.+.. +...+++.++.... ..+. .+.++.|+.+. .|+ |..... +..+ T Consensus 171 ~p~~~~~v~d~~~~~~~~~~v~~~~~~~-~~~~--~~~~~vyt~~~------i~~-----~~~~~~---~~~~------- 226 (501) T protein:vir:96 171 SPLETFVIYDNSLEDNSIAAVRYYNRGT-LQSA--KDVVEIYTDEH------IYT-----LDASDD---FNEI------- 226 (501) T ss_pred ccceeEEEEcCCCCCceEEEEEEEEeec-CCCc--EEEEEEEcCCc------EEE-----EeeCCC---ceec------- Confidence 9999999976542 44444444333222 2222 23456665542 122 221111 0011 Q ss_pred CCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeecchHHhccCCCCc Q lcl|Aclame:pro 238 GMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRTVFVSDVMLRTVPDES 317 (517) Q Consensus 238 ~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~l~~~~~~~ 317 (517) ...-++++++|+++|++ +|.|+|+|++++++||+||.++|++++.++....++.+...+.....+.. T Consensus 227 ----~~~~~~~g~vPvv~~~n---------n~~g~sd~e~v~~liDa~d~~~s~~~~~~~~~~~~~l~i~G~~~~~~~~~ 293 (501) T protein:vir:96 227 ----SVTTHAFGTVPITEYLN---------NIDGIGDYETELYLIDLYDSAESDTANHMSDMADAILAIYGDLALPKGMQ 293 (501) T ss_pred ----cccccCCCccceEEecC---------CccCCCchhhhHHHHHHHHHHHHHHHHHHHHhcCceeeeecccccCcccc Confidence 11235678888998864 26799999999999999999999999999766666655333321111111 Q ss_pred ccccCccCCcccceeee----ecCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHHHH Q lcl|Aclame:pro 318 GMPPPQVFDPDVNVYKS----IRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVS 393 (517) Q Consensus 318 ~~~~~~~fd~~~~~y~~----~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a 393 (517) +. .+....-+... ..+...+..++.+++++..++....++.+.+.|...++.+.-.++ ..++..||.++++ T Consensus 294 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~-~~~~n~Sg~Al~~ 368 (501) T protein:vir:96 294 AS----DMKRTRLMQLKPPKSADGKEGTVKAEYLTKSYDVSGAEAYKTRLNRDIHIFTNTPDMSDT-NFSGNTSGEALKY 368 (501) T ss_pred hh----hhhhcCeeeecccccccccccCcceeeEeccCCHHHHHHHHHHHHHHHHHHhCCcccCcc-cccccchHHHHHH Confidence 10 01111111111 112234456788999999999888899888888777766543333 2236678999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCCHHHH Q lcl|Aclame:pro 394 ENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTVEA 473 (517) Q Consensus 394 ~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~~~ 473 (517) +.+.+.+++..+++.|+.+|+++++.|+.++.... .+.......|.|.|++.++.|..+.++.+++++ |++|.+|+ T Consensus 369 ~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~--~~~~~d~~~i~i~f~~~~p~n~~e~ad~~~kl~--g~iS~et~ 444 (501) T protein:vir:96 369 KLFGLDQDRVDTQSQFTKGLKRRYRLAARIGSLVN--EFKDFDESLLKITFTPNLPKSLNEQVSILTGLG--GQVSQETA 444 (501) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cccccccccceEEeCCCCCcCHHHHHHHHHHHh--ccCchHHH Confidence 99999999999999999999999999998876432 223334456999999999999999999998875 89999999 Q ss_pred HHhhCCCCHHHHHHHHHHHHHhccccCCCCC--ccccCCCCC-----------CCCC Q lcl|Aclame:pro 474 IQRIFKVPKKTAEQWLEEIRKDQIELDPVTI--SQRAQKRMF-----------GDEE 517 (517) Q Consensus 474 l~~~~~~~eeea~~el~~i~~E~~~~~~~~~--~~~~~~~~~-----------G~ee 517 (517) +.+++++++ +++|++||++|+.+.++... +-.+..+.. ||+| T Consensus 445 ~~~l~~v~D--~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~e~~ 499 (501) T protein:vir:96 445 LSLSGLVES--PNEELDKINKEMSEIDFKGYSNDFNEHVGKYTDEVKETHTDDFERE 499 (501) T ss_pred HHhCCCCCC--HHHHHHHHHHHHHHhhccccccchhhcccccCCcCCCCCCCccccc Confidence 987755554 66789999988765432211 111111111 2222 No 18 >protein:vir:96839 Length: 474 # NCBI annotation: ORF008 # Family: family:all:125 # MgeID: mge:1642 # MgeName: EW # Cross-refs: genbank:acc:YP_240152;genbank:gi:66395815;genbank:GeneID:5133180 Probab=100.00 E-value=1.6e-53 Score=309.98 Aligned_cols=451 Identities=14% Similarity=0.093 Sum_probs=298.0 Q ss_pred CchH------HHHHHHHHHHHHHhhc--ccchh-hhccccCcCCHHHHHHHHHHHHHhcCCCcccccc-ccc-----Ccc Q lcl|Aclame:pro 1 MKVI------QRIKNFFKRGGYALSG--QTLKS-INDHEKINIDPNELARIERNLRQYEGDYPQVEYI-NSQ-----GKI 65 (517) Q Consensus 1 m~~~------~~ik~~~~~~~~~~~~--~~~~~-~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~-~~~-----~~~ 65 (517) |--| .++.+++.++.....+ +-++. |..| .....++.+.++||.|+++-+... ... ... T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~------~~~~~~~~~~~~Yy~g~~~i~~~~~~~~~~~~~~~~ 74 (474) T protein:vir:96 1 MIVIFWPNEKPYHERVVEQIKPKYETQEEMIIRLINDH------KPKIDDITVGERYYNHDPDVLRLAPKLDNKGEIDPL 74 (474) T ss_pred CeeeccCCCchhhhhHHHHhhhccCChHHHHHHHHHHH------HHHHHHHHHHHHHhccCCcchhccchhccccccccc Confidence 3333 2334444433322221 11111 1111 134567889999999997543321 111 112 Q ss_pred ccccccccChHHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEE Q lcl|Aclame:pro 66 QERDYMTLNLRKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVR 145 (517) Q Consensus 66 ~~~~~~~ln~~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k 145 (517) +...+.++|+|+.|+...+++||++|+++++++. ..++.|+++++ |+|.....+++..|+++|.+|++ T Consensus 75 ~~~~ki~~n~~~~Ivd~~~~~l~g~p~~~~~~d~-----------~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~ 142 (474) T protein:vir:96 75 KPDWRMFTNYHQNLVDQKVAYAVANPVTFSSDDD-----------KSLKTIQEVLN-HKWDDKLVDILTAASNKGIEWLQ 142 (474) T ss_pred ccchhcccchHHHHHHhhhhhhcccCceeecCch-----------HHHHHHHHHHh-cCHHHHHHHHHHHHHhcCeeEEE Confidence 2334678999999999999999999999987653 34677888876 57888999999999999999999 Q ss_pred EEEe-CCeeEEEEEcCCeEEEEEEcCC-ceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCc Q lcl|Aclame:pro 146 PYVD-NGEIEFSWALANAFYPLRSNSN-GISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNE 223 (517) Q Consensus 146 ~~~d-~g~~~i~~v~a~~~~P~~~~~~-~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~ 223 (517) +|+| +|++++.+++|++++|++.+.. +...+++.++.. . +.. ..|+|+.+.+ .+ |...+. T Consensus 143 ~y~d~~~~~~i~~~~p~~~~~v~d~~~~~~~~~~vr~~~~--~--~~~---~~~~yt~~~v---------~~--~~~~~~ 204 (474) T protein:vir:96 143 PYIDENGEFKTFRVPAEQAIPIWTNKERDTLKAFIRYYRL--D--GAE---RVEYWTDSDV---------TY--YEYQDG 204 (474) T ss_pred EEecCCCceEEEEEcccceEEEEcCCCCCceEEEEEEEee--c--Cce---EEEEEeCCeE---------EE--EEecCC Confidence 9997 6899999999999999866543 333333333221 1 111 2355544321 11 111111 Q ss_pred cccCcccccccccCC-CCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccce Q lcl|Aclame:pro 224 GEIGKRIPLEELYEG-MQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRT 302 (517) Q Consensus 224 ~~lG~~v~l~~~~~~-l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~ 302 (517) ..+............ .......++++++||++|+|+ +.|+|+|+.++++||++|.++|+++++++..... T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~nn---------~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~ 275 (474) T protein:vir:96 205 ILIPDYYHGEEHIQSHYYVGNKRVSWGRVPFIPFKNN---------PQEMSDLFMYKTIIDAMDKRLSDTQNTFDESTEL 275 (474) T ss_pred ceeeccccccccccccccccccccCCCceeEEEeccC---------CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhccc Confidence 111100000000000 001123467888999999752 5799999999999999999999999999877777 Q ss_pred eecchHHhccCCCCcccccCccCCcccceeeeecCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCC Q lcl|Aclame:pro 303 VFVSDVMLRTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDG 382 (517) Q Consensus 303 i~v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~ 382 (517) ++|..++ . ......|..+.+.++.+..+++++.++.++++++++++...++.+.+.|...++...-++. .. T Consensus 276 ~lv~~g~----~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~-~~ 346 (474) T protein:vir:96 276 IYILKGY----E----GQDLDEFMRNLKYYKAINVDGDGSGVDTIQIEVPVQSSKEYLDMLRDYVIEFGQGVDFQQD-KF 346 (474) T ss_pred eeeeecC----C----cccccchhhhhhcCceEEecCCCCceeEEeecCChHHHHHHHHHHHHHHHHHhCCcccccc-cc Confidence 7763332 1 1111124445556777777667778999999999999999999999999888876543322 22 Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHH Q lcl|Aclame:pro 383 RSMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQA 462 (517) Q Consensus 383 ~~~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~ 462 (517) ++..||.+++++.+.+.++++.+++.|+.+|+++++.|+.+.. ......+|.|+|++++|.|..+.++. + T Consensus 347 ~~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~~i~~~~~-------~~~~~~~i~i~f~~~~p~~~~e~~~~---~ 416 (474) T protein:vir:96 347 GNSPSGIALKFMYSNLDLKANKLKNKTLTALQELLQYIIDFYK-------LNIKVQDVEITFNFNVMVNELEQSQI---G 416 (474) T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCcccceeeEEeccCCCcCHHHHHHH---H Confidence 3567899999999999999999999999999999999887632 22345678999999999997776654 4 Q ss_pred HhcCCCCHHHHHHhhCCCCHHHHHHHHHHHHHhccccCCCCCccccC-CCCCCCCC Q lcl|Aclame:pro 463 KTFGFIPTVEAIQRIFKVPKKTAEQWLEEIRKDQIELDPVTISQRAQ-KRMFGDEE 517 (517) Q Consensus 463 ~~~G~~S~~~~l~~~~~~~eeea~~el~~i~~E~~~~~~~~~~~~~~-~~~~G~ee 517 (517) +.+|+||++|++..+.++++ +++|++||++|+.+..........+ .+..+++| T Consensus 417 ~~ag~iS~et~~~~~~~v~d--~~~E~~ri~~E~~e~~~~~~~~~~~~~~~~~d~~ 470 (474) T protein:vir:96 417 VQSQYLSKETVVTNHPWVDD--PVAELERIEQDNIDFNKQLPPLEGDANGRAQDNE 470 (474) T ss_pred HhcCCCchHHHHHhCCCCCC--HHHHHHHHHHHHHHHHhcccccccccccccCCCc Confidence 56799999999987655544 6789999998876533322221111 11222222 No 19 >protein:vir:9922 Length: 489 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:178 # MgeName: 315.6 # Cross-refs: genbank:acc:NP_795684;genbank:gi:28876464;genbank:GeneID:1257980 Probab=100.00 E-value=5.5e-53 Score=307.08 Aligned_cols=450 Identities=10% Similarity=0.008 Sum_probs=307.1 Q ss_pred Cch-HHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccChHHHH Q lcl|Aclame:pro 1 MKV-IQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLRKLS 79 (517) Q Consensus 1 m~~-~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~~~i 79 (517) |.+ .+.|++++.+.-. +...++.++++||.|+++.+++.....+.+...+.++|+|+.| T Consensus 13 ~~~~~~~~~~~i~~~~~--------------------~~~~r~~~~~~yy~g~~~i~~~~~~~~~~~~~~ki~~n~~~~i 72 (489) T protein:vir:99 13 SKLWIDQLKNYISRFKA--------------------EQLERLKELKRYYLGDNNIKYRPAKTDKYAADNRIASDFAKYI 72 (489) T ss_pred CCCCHHHHHHHHHHHHH--------------------HHHHHHHHHHHHhcccCccccccccccccCCcceeecchHHHH Confidence 554 4556666644211 1245788999999999876654433333444456889999999 Q ss_pred HHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe-----CCeeE Q lcl|Aclame:pro 80 ADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD-----NGEIE 154 (517) Q Consensus 80 ~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d-----~g~~~ 154 (517) +...+++||++++++++++. ..+++|+.++++|+|...+.++++.++++|.+|..+|+. +++++ T Consensus 73 v~~~~~~l~g~~~~~~~~d~-----------~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~~~~~d~~~~~~ 141 (489) T protein:vir:99 73 TVFEQGYMLGVPVEYKNENK-----------DLQAAIDLMSVRNNEDYHNVKIKTDLSIYGRAYELLTVEKIDDKKTEVK 141 (489) T ss_pred HHHHhhhhccCCceeecCCh-----------hHHHHHHHHHhhcChhHHHHHHHHHHhhCCeEEEEEeeccCcCCCcceE Confidence 99999999999999987653 356889999999999999999999999999999999873 46899 Q ss_pred EEEEcCCeEEEEEEcCC-ceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccc Q lcl|Aclame:pro 155 FSWALANAFYPLRSNSN-GISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLE 233 (517) Q Consensus 155 i~~v~a~~~~P~~~~~~-~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~ 233 (517) |.+++|.+++|++.+.. +...+++.++. ........+.++++|+.+.+ |+ |.......-+. .+ T Consensus 142 i~~~~p~~~~~v~dd~~~~~~~~~i~~~~--~~~~~~~~~~~~~~y~~~~i------~~-----~~~~~~~~~~~--~~- 205 (489) T protein:vir:99 142 LYQLPAEQTFVIYDDTYQRNSLMAVHFYD--IDYGSGKRKQIIKAYTSDTI------YT-----YEDYNLETKGM--RL- 205 (489) T ss_pred EEEEcccceEEEEcCCCCCceEEEEEEEE--EecCCCceEEEEEEEeCCcE------EE-----EEecCCCcccc--ee- Confidence 99999999999976543 33334333222 23333344566777766532 21 22222111110 11 Q ss_pred cccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeecchHHhccC Q lcl|Aclame:pro 234 ELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRTVFVSDVMLRTV 313 (517) Q Consensus 234 ~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~l~~~ 313 (517) ....-++++++|+++|+|+ +.|.|+|+++++++|+||.++|++++.++....++.+-..+.... T Consensus 206 -------~~~~~~~~g~vPvv~~~n~---------~~~~s~~~~v~~liDa~d~~~s~~~~~~~~~~~~~l~i~g~~~~~ 269 (489) T protein:vir:99 206 -------KDYEGHFFKGVPVNEYANN---------EERTGAYESVLDNIDAYDLSQSELANFQQDSVNALLVIAGNAYTG 269 (489) T ss_pred -------cccccccCCceeEEEeecC---------CCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCccc Confidence 1123356788889988753 458999999999999999999999999976655555532221111 Q ss_pred CCCcccccC----------ccCCcccceeeeecCC----CCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccc Q lcl|Aclame:pro 314 PDESGMPPP----------QVFDPDVNVYKSIRMG----TDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFS 379 (517) Q Consensus 314 ~~~~~~~~~----------~~fd~~~~~y~~~~~~----~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~ 379 (517) .+.+..... .....+...+..+..+ ..+..++.++++++++.+...++.+.+.|...++.+.-+ . T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~-~ 348 (489) T protein:vir:99 270 ADENDYLDDGRLNPNGRLAISIGFKKAQVLILDDNPNPNGVKPQAYFLKKEYDTAGSEAYKNRLVADILRFTFTPDTQ-D 348 (489) T ss_pred ccchhhhhhcccccccccccccccccceeeeeccccCccccccceeeeeecCChHHHHHHHHHHHHHHHHHhCCcccc-c Confidence 110000000 0000111111111111 123457889999999999999999988887777664322 2 Q ss_pred cCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHH Q lcl|Aclame:pro 380 FDGRSMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFY 459 (517) Q Consensus 380 ~~~~~~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~ 459 (517) ...+|..||.+++++.+.+.+++..+++.|+.+|++++++|+.++...+..........+|+|+|+++++.|..+.++.+ T Consensus 349 ~~~~~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~~~~i~v~f~~~~p~d~~~~~~~~ 428 (489) T protein:vir:99 349 MKFSGVQSGESMKYKLMASDNYREKQERLFKKGLMRRLRLAANIWAIKGNEATTYSLVNDTSIVFTPNLPQNDNEIVTAA 428 (489) T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccccccceEEeCCCCCcCHHHHHHHH Confidence 22346778999999999999999999999999999999999988764332111122234689999999999999999999 Q ss_pred HHHHhcCCCCHHHHHHhhCCCCHHHHHHHHHHHHHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 460 GQAKTFGFIPTVEAIQRIFKVPKKTAEQWLEEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 460 ~~~~~~G~~S~~~~l~~~~~~~eeea~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) .+++ |+||+++++..+++++++++++|++||++|+.+..... +.....+.+|++| T Consensus 429 ~kl~--giis~et~~~~l~~v~~~d~~~E~~ri~~E~~~~~~~~-~~~~~~~~~~~~~ 483 (489) T protein:vir:99 429 QNLY--GIVSDQTIFEILNTVTGVDAEAELKRLKEEADKKQSLP-EPRLVGDASGQEE 483 (489) T ss_pred HHHh--ccCCHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccc-cccccCCCCCCcC Confidence 8875 99999999999888988889999999998875443322 1222233334444 No 20 >protein:vir:78805 Length: 511 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1858 # MgeName: 80alpha # Cross-refs: genbank:acc:YP_001285356;genbank:gi:148717884;genbank:GeneID:5246936 Probab=100.00 E-value=6.4e-53 Score=306.74 Aligned_cols=452 Identities=9% Similarity=0.016 Sum_probs=301.4 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCccccccc-ccCccccccccccChHHHH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYIN-SQGKIQERDYMTLNLRKLS 79 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~-~~~~~~~~~~~~ln~~~~i 79 (517) |...+.|+++|.+.. .....++.++++||.|+++.++... ...+.+.+.+.++|+|+.| T Consensus 39 ~~~~~~i~~~i~~~~--------------------~~~~~r~~~l~~Yy~g~~~il~~~~~~~~~~~~~~ki~~n~~k~I 98 (511) T protein:vir:78 39 LQNVNEVSKYIEHHM--------------------DYQRPRLKVLSDYYEGKTKNLVELTRRKEEYMADNRVAHDYASYI 98 (511) T ss_pred hcCHHHHHHHHHHHH--------------------HhhhHHHHHHHHHhhccCccccccCcccccccCcceeecchHHHH Confidence 223333444433211 1123577888999999987665433 2333444567889999999 Q ss_pred HHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe-CCeeEEEEE Q lcl|Aclame:pro 80 ADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD-NGEIEFSWA 158 (517) Q Consensus 80 ~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d-~g~~~i~~v 158 (517) +...+++|++.|++|++++. ..++.|+.++++|+|.....++++.++.+|.+|..+|+| +|.+++.++ T Consensus 99 v~~~~~yl~g~p~~~~~~d~-----------~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~vy~d~dg~~~i~~~ 167 (511) T protein:vir:78 99 SDFINGYFLGNPIQYQDDDK-----------DVLEAIEAFNDLNDVESHNRSLGLDLSIYGKAYELMIRNQDDETRLYKS 167 (511) T ss_pred HHHHhhhhcccCceeecCch-----------HHHHHHHHHHhhcChhHHHHHHHHHHHhcCeeEEEEEeCCCCceEEEEE Confidence 99999999999999987653 356889999999999999999999999999999999997 588999999 Q ss_pred cCCeEEEEEEcCC-ceEEEEEEEEEEE-EecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCccccccccc Q lcl|Aclame:pro 159 LANAFYPLRSNSN-GISEGVMKSVTTK-VIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELY 236 (517) Q Consensus 159 ~a~~~~P~~~~~~-~~~~~a~~~~~~~-~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~ 236 (517) +|.+++|++.+.. +...+++.++.+. .++...+...++|+|+.+++ |+ |..++.. ..++... T Consensus 168 ~p~~~~~v~dd~~~~~~~~~vr~~~~~~~~~~~~~~~~~~~vyt~~~i------~~-----~~~~~~~----~~~~~~~- 231 (511) T protein:vir:78 168 DAMSTFIIYDNTVERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGV------YR-----YLTNRTN----GLKLTPR- 231 (511) T ss_pred cccceEEEEcCCCCCceEEEEEEEEeeeccccccceEEEEEEEeCCcE------EE-----EEecCCC----ccccccc- Confidence 9999999976654 3333433333322 23333344556777765531 11 2222211 1111110 Q ss_pred CCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeecchHHhccCCC- Q lcl|Aclame:pro 237 EGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRTVFVSDVMLRTVPD- 315 (517) Q Consensus 237 ~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~l~~~~~- 315 (517) .....-++++.+|+++|+++ +.|.|+|++++++||+||.++|++++.++.....+.|-..+...+.. T Consensus 232 ---~~~~~~~~~g~vPvv~~~n~---------~~g~gd~e~v~~liDa~~~~~S~~~~~~~~~~~~~lv~~G~~~~~~~~ 299 (511) T protein:vir:78 232 ---ENSFESHSFERMPITEFSNN---------ERRKGDYEKVITLIDLYDNAESDTANYMSDLNDAMLLIKGNLNLDPVE 299 (511) T ss_pred ---ccccccCcCcccceEEecCC---------CCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhcchhheecCccCCchh Confidence 11223456778888888652 46999999999999999999999999997665555553332211111 Q ss_pred CcccccCccCCcccceeeeecC--CCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHHHH Q lcl|Aclame:pro 316 ESGMPPPQVFDPDVNVYKSIRM--GTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVS 393 (517) Q Consensus 316 ~~~~~~~~~fd~~~~~y~~~~~--~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a 393 (517) ..+......+......+....+ ..+++.++.++++++++++...++.+.+.|...++.+.-+++ ..+|..||.++++ T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~L~~~I~~~s~~P~~~~~-~~~~n~Sg~Al~~ 378 (511) T protein:vir:78 300 VRKQKEANVLFLEPTVYVDAEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNMKDD-NFSGTQSGEAMKY 378 (511) T ss_pred hcccccccceeccccceeccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCcccccc-ccccccHHHHHHH Confidence 1111111112112222222221 234556888999999999999999988888887766543322 2236678999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCCHHHH Q lcl|Aclame:pro 394 ENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTVEA 473 (517) Q Consensus 394 ~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~~~ 473 (517) +.+.+.+++..+++.|+.+|++++++|+.+.....- ........+++|.|+++++.|..++++.+.+++ |++|.+++ T Consensus 379 ~~~~l~~ka~~~~~~f~~~l~~~~~li~~~~~~~~~-~~~~~~~~~i~~~f~~~~p~n~~e~~d~~~kl~--G~iS~et~ 455 (511) T protein:vir:78 379 KLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRS-IDANKDFNTVRYVYNRNLPKSLIEELKAYIDSG--GKISQTTL 455 (511) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CccccccccceEEeCCCCCcCHHHHHHHHHHHh--ccCChHHH Confidence 999999999999999999999999999987654321 112233457899999999999999999988875 99999999 Q ss_pred HHhhCCCCHHHHHHHHHHHHHhccccCC----------CCCcc--ccC--CCCCCCCC Q lcl|Aclame:pro 474 IQRIFKVPKKTAEQWLEEIRKDQIELDP----------VTISQ--RAQ--KRMFGDEE 517 (517) Q Consensus 474 l~~~~~~~eeea~~el~~i~~E~~~~~~----------~~~~~--~~~--~~~~G~ee 517 (517) +..++ ++++ +++|++||++|+.+..+ ...+. ..+ .....++| T Consensus 456 l~~l~-~v~d-~~~El~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 511 (511) T protein:vir:78 456 MSLFS-FFQD-PELEVKKIEEDEKESIKKAQKGIYKDPRDINDDEQDDDTKDTVDKKE 511 (511) T ss_pred HHhCC-CCCC-HHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCccCcccccC Confidence 87764 4443 78899999988643211 11111 111 11111111 No 21 >protein:vir:96366 Length: 511 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1613 # MgeName: 53 # Cross-refs: genbank:acc:YP_239644;genbank:gi:66395376;genbank:GeneID:5132842 Probab=100.00 E-value=6.4e-53 Score=306.74 Aligned_cols=452 Identities=9% Similarity=0.016 Sum_probs=301.4 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCccccccc-ccCccccccccccChHHHH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYIN-SQGKIQERDYMTLNLRKLS 79 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~-~~~~~~~~~~~~ln~~~~i 79 (517) |...+.|+++|.+.. .....++.++++||.|+++.++... ...+.+.+.+.++|+|+.| T Consensus 39 ~~~~~~i~~~i~~~~--------------------~~~~~r~~~l~~Yy~g~~~il~~~~~~~~~~~~~~ki~~n~~k~I 98 (511) T protein:vir:96 39 LQNVNEVSKYIEHHM--------------------DYQRPRLKVLSDYYEGKTKNLVELTRRKEEYMADNRVAHDYASYI 98 (511) T ss_pred hcCHHHHHHHHHHHH--------------------HhhhHHHHHHHHHhhccCccccccCcccccccCcceeecchHHHH Confidence 223333444433211 1123577888999999987665433 2333444567889999999 Q ss_pred HHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe-CCeeEEEEE Q lcl|Aclame:pro 80 ADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD-NGEIEFSWA 158 (517) Q Consensus 80 ~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d-~g~~~i~~v 158 (517) +...+++|++.|++|++++. ..++.|+.++++|+|.....++++.++.+|.+|..+|+| +|.+++.++ T Consensus 99 v~~~~~yl~g~p~~~~~~d~-----------~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~vy~d~dg~~~i~~~ 167 (511) T protein:vir:96 99 SDFINGYFLGNPIQYQDDDK-----------DVLEAIEAFNDLNDVESHNRSLGLDLSIYGKAYELMIRNQDDETRLYKS 167 (511) T ss_pred HHHHhhhhcccCceeecCch-----------HHHHHHHHHHhhcChhHHHHHHHHHHHhcCeeEEEEEeCCCCceEEEEE Confidence 99999999999999987653 356889999999999999999999999999999999997 588999999 Q ss_pred cCCeEEEEEEcCC-ceEEEEEEEEEEE-EecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCccccccccc Q lcl|Aclame:pro 159 LANAFYPLRSNSN-GISEGVMKSVTTK-VIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELY 236 (517) Q Consensus 159 ~a~~~~P~~~~~~-~~~~~a~~~~~~~-~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~ 236 (517) +|.+++|++.+.. +...+++.++.+. .++...+...++|+|+.+++ |+ |..++.. ..++... T Consensus 168 ~p~~~~~v~dd~~~~~~~~~vr~~~~~~~~~~~~~~~~~~~vyt~~~i------~~-----~~~~~~~----~~~~~~~- 231 (511) T protein:vir:96 168 DAMSTFIIYDNTVERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGV------YR-----YLTNRTN----GLKLTPR- 231 (511) T ss_pred cccceEEEEcCCCCCceEEEEEEEEeeeccccccceEEEEEEEeCCcE------EE-----EEecCCC----ccccccc- Confidence 9999999976654 3333433333322 23333344556777765531 11 2222211 1111110 Q ss_pred CCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeecchHHhccCCC- Q lcl|Aclame:pro 237 EGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRTVFVSDVMLRTVPD- 315 (517) Q Consensus 237 ~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~l~~~~~- 315 (517) .....-++++.+|+++|+++ +.|.|+|++++++||+||.++|++++.++.....+.|-..+...+.. T Consensus 232 ---~~~~~~~~~g~vPvv~~~n~---------~~g~gd~e~v~~liDa~~~~~S~~~~~~~~~~~~~lv~~G~~~~~~~~ 299 (511) T protein:vir:96 232 ---ENSFESHSFERMPITEFSNN---------ERRKGDYEKVITLIDLYDNAESDTANYMSDLNDAMLLIKGNLNLDPVE 299 (511) T ss_pred ---ccccccCcCcccceEEecCC---------CCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhcchhheecCccCCchh Confidence 11223456778888888652 46999999999999999999999999997665555553332211111 Q ss_pred CcccccCccCCcccceeeeecC--CCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHHHH Q lcl|Aclame:pro 316 ESGMPPPQVFDPDVNVYKSIRM--GTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVS 393 (517) Q Consensus 316 ~~~~~~~~~fd~~~~~y~~~~~--~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a 393 (517) ..+......+......+....+ ..+++.++.++++++++++...++.+.+.|...++.+.-+++ ..+|..||.++++ T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~L~~~I~~~s~~P~~~~~-~~~~n~Sg~Al~~ 378 (511) T protein:vir:96 300 VRKQKEANVLFLEPTVYVDAEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNMKDD-NFSGTQSGEAMKY 378 (511) T ss_pred hcccccccceeccccceeccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCcccccc-ccccccHHHHHHH Confidence 1111111112112222222221 234556888999999999999999988888887766543322 2236678999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCCHHHH Q lcl|Aclame:pro 394 ENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTVEA 473 (517) Q Consensus 394 ~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~~~ 473 (517) +.+.+.+++..+++.|+.+|++++++|+.+.....- ........+++|.|+++++.|..++++.+.+++ |++|.+++ T Consensus 379 ~~~~l~~ka~~~~~~f~~~l~~~~~li~~~~~~~~~-~~~~~~~~~i~~~f~~~~p~n~~e~~d~~~kl~--G~iS~et~ 455 (511) T protein:vir:96 379 KLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRS-IDANKDFNTVRYVYNRNLPKSLIEELKAYIDSG--GKISQTTL 455 (511) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CccccccccceEEeCCCCCcCHHHHHHHHHHHh--ccCChHHH Confidence 999999999999999999999999999987654321 112233457899999999999999999988875 99999999 Q ss_pred HHhhCCCCHHHHHHHHHHHHHhccccCC----------CCCcc--ccC--CCCCCCCC Q lcl|Aclame:pro 474 IQRIFKVPKKTAEQWLEEIRKDQIELDP----------VTISQ--RAQ--KRMFGDEE 517 (517) Q Consensus 474 l~~~~~~~eeea~~el~~i~~E~~~~~~----------~~~~~--~~~--~~~~G~ee 517 (517) +..++ ++++ +++|++||++|+.+..+ ...+. ..+ .....++| T Consensus 456 l~~l~-~v~d-~~~El~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 511 (511) T protein:vir:96 456 MSLFS-FFQD-PELEVKKIEEDEKESIKKAQKGIYKDPRDINDDEQDDDTKDTVDKKE 511 (511) T ss_pred HHhCC-CCCC-HHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCccCcccccC Confidence 87764 4443 78899999988643211 11111 111 11111111 No 22 >protein:vir:96179 Length: 468 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1602 # MgeName: 37 # Cross-refs: genbank:acc:YP_240075;genbank:gi:66395736;genbank:GeneID:5133166 Probab=100.00 E-value=3.8e-53 Score=307.98 Aligned_cols=440 Identities=13% Similarity=0.092 Sum_probs=287.6 Q ss_pred CchHHHHHHHHHHHHHHhhcccch-hhhccccCcCCHHHHHHHHHHHHHhcCCCccccccccc------Ccccccccccc Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLK-SINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQ------GKIQERDYMTL 73 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~------~~~~~~~~~~l 73 (517) +..|+.++.-.+ +..+.|. -+..| .....++.++++||.|+++-++.+... ...+.+.+.++ T Consensus 14 ~~~~~~~~~~~~-----~~~~~i~~~i~~~------~~~~~~~~~~~~yY~g~~~i~~~~~~~~~~~~~~~~~~~~ki~~ 82 (468) T protein:vir:96 14 ERVVEQIKPQYE-----TQEEMILRLITKH------KENVEDITVGERYYNHQPDVLFNAPKRNVKGEIDPFKPDWRMYT 82 (468) T ss_pred hheeeccccccc-----CcHHHHHHHHHHH------HHHHHHHHHHHHHhcCCCcccccccccccccccccccccccccc Confidence 222221110000 0000010 01111 123457888999999998655432221 12223457889 Q ss_pred ChHHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe-CCe Q lcl|Aclame:pro 74 NLRKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD-NGE 152 (517) Q Consensus 74 n~~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d-~g~ 152 (517) |+++.|+...+++||++++++++++. ..++.|+.+++ |+|...+.+++..|+++|.+|+++|+| +|. T Consensus 83 n~~~~Iv~~~~~~l~g~p~~~~~~d~-----------~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~ 150 (468) T protein:vir:96 83 NYHQNLVDQKVAYAVANPVTYGTEDE-----------KSLKTIQEVLN-HKWDDKLVDILTAASNKGVEWIQPYVDEQGE 150 (468) T ss_pred chHHHHHHHHHhhhccCCceeccCCh-----------HHHHHHHHHHh-cCHHHHHHHHHHHHhhcCeEEEEEEEcCCCc Confidence 99999999999999999999988653 35678888886 678999999999999999999999998 688 Q ss_pred eEEEEEcCCeEEEEEEcCC-ceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccc Q lcl|Aclame:pro 153 IEFSWALANAFYPLRSNSN-GISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIP 231 (517) Q Consensus 153 ~~i~~v~a~~~~P~~~~~~-~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~ 231 (517) +++.+++|++++|++.+.. +...+++.+ + ...+ . +++|.|+.+++ .+ |...+..- ....+ T Consensus 151 ~~i~~~~p~~~~~v~~~~~~~~~~~~ir~-~-~~~~--~---~~~~~~~~~~~---------~~--~~~~~~~~-~~~~~ 211 (468) T protein:vir:96 151 FKTFRVPAEQAIPIWTNKERDELKAFIRL-Y-ELDG--G---ERVEYWTANDV---------TF--YELKDGQL-IPDYY 211 (468) T ss_pred eEEEEEcccceEEEEcCCCCCceEEEEEE-E-EecC--c---eEEEEEeCCeE---------EE--EEEcCCce-eeccc Confidence 9999999999999865432 333333322 2 2221 1 23466654321 11 11111100 00000 Q ss_pred --cccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeecchHH Q lcl|Aclame:pro 232 --LEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRTVFVSDVM 309 (517) Q Consensus 232 --l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~ 309 (517) ..............++++++|+++|+|+ +.|+|+|++++++||+||.++|+++++++.....+++...+ T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~iPvv~~~n~---------~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~p~lv~~g~ 282 (468) T protein:vir:96 212 QGEEHVQAHYYVGNKSMSWNRVPFIPFKNN---------PQEVSDLFMYKTIIDAMDKRLSDTQNTFDEATELIYVLKGY 282 (468) T ss_pred ccccccccceeeccccccCCcccEEEecCC---------CCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCceeeeecC Confidence 0000000111123467888999999752 56999999999999999999999999997554445542222 Q ss_pred hccCCCCcccccCccCCcccceeeeecCC-CCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccC-CCccch Q lcl|Aclame:pro 310 LRTVPDESGMPPPQVFDPDVNVYKSIRMG-TDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFD-GRSMKT 387 (517) Q Consensus 310 l~~~~~~~~~~~~~~fd~~~~~y~~~~~~-~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~-~~~~~T 387 (517) +......|..+.+.++.+..+ ++++.++.+++++.++++...++.+.+.|...++... +.++ .+|..| T Consensus 283 --------~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~--~~~~~~~~n~S 352 (468) T protein:vir:96 283 --------EGEDLEEFMYNLKYYKAINVDGDGSGGVDTIQIDVPVQSAKEYLDMLRDYVIEFGQGVD--FQQDKFGNSPS 352 (468) T ss_pred --------CccccchhhhhhhcCceEEecCCCCCcceEEeecCChHHHHHHHHHHHHHHHHHhCccc--ccccccccchH Confidence 111111233334444444443 3455689999999999999999999998888776542 2222 246779 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCC Q lcl|Aclame:pro 388 ATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGF 467 (517) Q Consensus 388 Atei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~ 467 (517) |.+++++.+.+.++++++++.|+.+|+++++.|+.+. +......+|.|+|++++|.|..+.++++ +.+|+ T Consensus 353 g~Alk~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~-------g~~~d~~~i~i~f~~~~p~d~~e~a~~~---~~~g~ 422 (468) T protein:vir:96 353 GIALKFMYSNLDLKANKLKNKTLTALQELLQYIIDFY-------KLSIKVQDVEITFNFNVMVNELEQSQIG---VNSQY 422 (468) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCCcccceeeEEecCCCCcCHHHHHHHH---HhcCC Confidence 9999999999999999999999999999999998753 1223456799999999999988777654 45799 Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 468 IPTVEAIQRIFKVPKKTAEQWLEEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 468 ~S~~~~l~~~~~~~eeea~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) ||.+|+|.+++++++ +++|++||++|+.+...... .-+..+++| T Consensus 423 iS~et~i~~l~~v~D--~~~E~~ri~~E~~~~~~~~~----~~~~~~~~~ 466 (468) T protein:vir:96 423 LSKETVVTNHPWVDD--PVAEMERIDQEELALPSIEE----GLNGKENNE 466 (468) T ss_pred CchHHHHHhCCCCCC--HHHHHHHHHHHHHHHHHHhh----ccCCCCCCC Confidence 999999987655544 77899999999865432111 122233444 No 23 >protein:vir:94546 Length: 506 # NCBI annotation: minor head protein # Family: family:all:125 # MgeID: mge:1510 # MgeName: phiJL-1 # Cross-refs: genbank:acc:YP_223886;genbank:gi:62327098;genbank:GeneID:5075562 Probab=100.00 E-value=8.4e-53 Score=306.09 Aligned_cols=462 Identities=11% Similarity=0.030 Sum_probs=295.0 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcC----CHHHHHHHHHHHHHhcCCCccccccc--ccCccccccccccC Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINI----DPNELARIERNLRQYEGDYPQVEYIN--SQGKIQERDYMTLN 74 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~----~~~~~~~i~~~~~~Y~g~~~~~~~~~--~~~~~~~~~~~~ln 74 (517) |-. .+.+... +..+..+.++.++...-..+ -.....++.++.+||.|+++.+..+. ...+.+...+.++| T Consensus 1 ~~~--~~~~~~~--~~~~~~~~~~~l~~~~i~~li~~~~~~~~~r~~~l~~YY~g~~~~i~~~~~~~~~~~~~~~ki~~n 76 (506) T protein:vir:94 1 MDY--DLTEHKQ--ANLIYQESLENLTPNKIMKFITHHFNYQRPRLEMLDDYYQGYNLKILDKQSRRHEDGKADHRATHS 76 (506) T ss_pred CCc--chhhhhc--ceeecccchhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccCCcceeecc Confidence 211 0111000 00000111111111000000 01235578889999999987654332 12333445578899 Q ss_pred hHHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe-CCee Q lcl|Aclame:pro 75 LRKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD-NGEI 153 (517) Q Consensus 75 ~~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d-~g~~ 153 (517) +|+.|+...+++|+++++++++++. ..++.|+.++++|+|...+.++++.|+++|.+|+++|+| +|.+ T Consensus 77 ~~~~Iv~~~~~~l~G~p~~~~~~d~-----------~~~~~l~~~~~~N~~~~~~~~~~~~~~~~G~a~~~v~~ded~~~ 145 (506) T protein:vir:94 77 FAKYIADFQTSYSVGNPINVKLPDD-----------GSNSGFDTFNKANDVDAENYDLFLDMSRYGRAYEYVYRGEDNEE 145 (506) T ss_pred hHHHHHHHhhhhhcccCceeecCcc-----------hHHHHHHHHHhccCHhHHHHHHHHHHHhcCeEEEEEEecCCCee Confidence 9999999999999999999988653 346789999999999999999999999999999999997 5899 Q ss_pred EEEEEcCCeEEEEEEcCC-ceEEEEEEEEEEEEecCCcE--EEEEEEEEeecceeeccceEEEEEEEeecCCccccCccc Q lcl|Aclame:pro 154 EFSWALANAFYPLRSNSN-GISEGVMKSVTTKVIGNKTV--YYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRI 230 (517) Q Consensus 154 ~i~~v~a~~~~P~~~~~~-~~~~~a~~~~~~~~~~~~~~--~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v 230 (517) ++.+++|.+++|++.+.. +...+++.++......++.. .+...+.|+... ++ .|... ..+..+ T Consensus 146 ~i~~~~p~~~~~v~dd~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~yt~~~-------~~----~~~~~---~~~~~~ 211 (506) T protein:vir:94 146 HLAKLDPLDTFVIYSTDVDPKPIMAVRYHQIELVDDNQVSTINYVPETWTADT-------YT----LYNPT---PIMGKM 211 (506) T ss_pred EEEEEcccceEEEecCCCCCceEEEEEEEeeeeccCCceeEEEEEEEEEeCce-------EE----Eeccc---cCccce Confidence 999999999999977643 33333333332222222221 122223333211 11 12211 111111 Q ss_pred ccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeecchHHh Q lcl|Aclame:pro 231 PLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRTVFVSDVML 310 (517) Q Consensus 231 ~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~l 310 (517) .....++++++||++|+|+ +.|+|+|++.+++||+||..+|++++.++.....+++-..+. T Consensus 212 ----------~~~~~~~~g~vPvv~~~n~---------~~~~sd~e~~~~liDa~d~~~S~~~~~~~~~~~~~l~~~g~~ 272 (506) T protein:vir:94 212 ----------QVDTTKPITTFPVVEFKNS---------NFRLGDFENVLPLIDLYDAAQSDTANYMTDLNEAMLIIQGDI 272 (506) T ss_pred ----------eccccccCCccceEEecCC---------CCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCc Confidence 1112367788889988753 358999999999999999999999999975555554422211 Q ss_pred cc--------------CCCCcc--cccCccCCcccceeeeecC--------CCCCCcceEEecccChHHHHHHHHHHHHH Q lcl|Aclame:pro 311 RT--------------VPDESG--MPPPQVFDPDVNVYKSIRM--------GTDEEFVKDVTHDIRTEQYKEAINQALRT 366 (517) Q Consensus 311 ~~--------------~~~~~~--~~~~~~fd~~~~~y~~~~~--------~~~~~~v~~~~~dir~e~~~~~l~~~l~~ 366 (517) .. +.++.. ......+..+.+.++.+.. ...+..++.++++++++++...++.+.+. T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~l~~~ 352 (506) T protein:vir:94 273 DTLFEGSDMMNTIDPNDEDAMAKLAKDKLELIKEMKDANMLLLKSGMTVNGTQTSVDAKYINKTYDVVGSEAYKKRVAGD 352 (506) T ss_pred cccccchhccccccccccccccccccchhHHHhhhhhcCeeeecccccccCccccccceeeeecCCHHHHHHHHHHHHHH Confidence 00 001110 0000111112222222221 12344688899999999999999999999 Q ss_pred HHHHhCCCccccccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCC Q lcl|Aclame:pro 367 LEMELKLSVGTFSFDGRSMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDD 446 (517) Q Consensus 367 i~~~~g~s~~~~~~~~~~~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d 446 (517) |...++.+.-++ ...++..||.+++++.+.+.++++.+++.|+.+|++++++|+.++... .++......+|+|.|++ T Consensus 353 I~~~s~~p~~~~-~~~~~n~Sg~Aik~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~--~~~~~~d~~~i~i~f~~ 429 (506) T protein:vir:94 353 IHKFSHTPDLTD-ENFASNSSGVAMQYKVLGTVELASTKRRMFERGLYARYQIISDIENSI--HGDWTFDPQELTFTFRD 429 (506) T ss_pred HHHHhCcccccc-ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCccccccccceEEeCC Confidence 988887754322 222467789999999999999999999999999999999999987642 22233445579999999 Q ss_pred CccCCHHHHHHHHHHHHhcCCCCHHHHHHhhCCCCHHHHHHHHHHHHHhccccCCCCCcc-----ccC---CCCCCCCC Q lcl|Aclame:pro 447 GVFQDRSALLRFYGQAKTFGFIPTVEAIQRIFKVPKKTAEQWLEEIRKDQIELDPVTISQ-----RAQ---KRMFGDEE 517 (517) Q Consensus 447 ~i~~d~~~~~~~~~~~~~~G~~S~~~~l~~~~~~~eeea~~el~~i~~E~~~~~~~~~~~-----~~~---~~~~G~ee 517 (517) +++.|..+.++.+.++ +|+||+++++.+++++++ +++|++||++|+.+.++..+.. ... ...-+++| T Consensus 430 ~~p~d~~e~a~~~~kl--~g~iS~et~~~~lp~v~d--~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 504 (506) T protein:vir:94 430 NLPADNISQIKALVQA--GATLPQKYLYQQLPGVTN--PQDIVDMMKEQSANGDYSFDQNGVISNDGQTNTTATQTDEE 504 (506) T ss_pred CCCcCHHHHHHHHHHH--hccCChHHHHHhCCCCCC--HHHHHHHHHHHHHHHhhcchhhcCCCcccCccccccccccC Confidence 9999999999988877 599999999987755554 5678999999886544422111 111 11112222 No 24 >protein:vir:106639 Length: 481 # NCBI annotation: ORF003 # Family: family:all:125 # MgeID: mge:1557 # MgeName: 187 # Cross-refs: genbank:acc:YP_239490;genbank:gi:66395218;genbank:GeneID:4555793 Probab=100.00 E-value=4e-52 Score=302.37 Aligned_cols=453 Identities=8% Similarity=-0.001 Sum_probs=306.5 Q ss_pred CchHHHHHHHHHHHHHHhhc-------ccchh-hhccccCcCCHHHHHHHHHHHHHhcCCCcccccccc---cCcccccc Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSG-------QTLKS-INDHEKINIDPNELARIERNLRQYEGDYPQVEYINS---QGKIQERD 69 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~-------~~~~~-~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~---~~~~~~~~ 69 (517) |+.|..+.+.+.+.-..+.. ..+++ |+.| -.+.+.++.++.+||.|+++.+..+.. ....+... T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~-----~~~~~~~~~~~~~yY~g~~~~i~~~~~~~~~~~~~~~~ 80 (481) T protein:vir:10 6 INNINTKFSPLANDDFVVSDLAELLKEENLRNFISRH-----QTEQVPRLEMLESYYLNRNTDILAGERRLQKYGDKADH 80 (481) T ss_pred eehhchhcccccCceeeeecchhhcCHHHHHHHHHHH-----HHHHHHHHHHHHHHhcCCCcccccCccccccccccccc Confidence 88887776665432211110 01111 1111 134567788899999999876533221 22223344 Q ss_pred ccccChHHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe Q lcl|Aclame:pro 70 YMTLNLRKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD 149 (517) Q Consensus 70 ~~~ln~~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d 149 (517) +.++|+|+.|++..+++|+++++++++++. ..++.|++++++|+|...+.++++.++..|.+|+++|+| T Consensus 81 ki~~n~~~~ivd~~~~~l~g~~~~~~~~d~-----------~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~~~~d 149 (481) T protein:vir:10 81 RAVHNYAKYVSRFIVGYLTGNPITITHQDN-----------QTNDKIIELNDLNDADEVNSDLALNLSIYGRAYEIVYRD 149 (481) T ss_pred eeecchHHHHHHHHHhhhccCCceEecCCh-----------hHHHHHHHHHHhcChhHHHHHHHHHHHhcCeEEEEEEeC Confidence 678999999999999999999999988653 356789999999999999999999999999999999997 Q ss_pred -CCeeEEEEEcCCeEEEEEEcCC-ceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccC Q lcl|Aclame:pro 150 -NGEIEFSWALANAFYPLRSNSN-GISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIG 227 (517) Q Consensus 150 -~g~~~i~~v~a~~~~P~~~~~~-~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG 227 (517) +|.+++.+++|.+++|++.+.. +...+++.++. ..+.....++++|+|+.+.+ |+ |..++. T Consensus 150 ~dg~~~i~~~~p~~~~~v~d~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~y~~~~i------~~-----~~~~~~---- 212 (481) T protein:vir:10 150 FEDRDTFKVLDPKSTFVVYDQTLDKKVVAGVRYFE--KQDKDKVPVQHVEVYTTDKI------YY-----IEIKGG---- 212 (481) T ss_pred CCCeEEEEEEcccceEEEEcCCCCCceEEEEEEEE--EeeCCCceEEEEEEEecCeE------EE-----EEecCC---- Confidence 6889999999999999865543 33334333222 22233334556788765431 22 222211 Q ss_pred cccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeecch Q lcl|Aclame:pro 228 KRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRTVFVSD 307 (517) Q Consensus 228 ~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~ 307 (517) ...+ + ...-++++++|+++|+|+ +.|+|+|++++++||++|.++|++.+.++.....+++-. T Consensus 213 -~~~~------~--~~~~~~~g~vPvv~~~n~---------~~g~~~~~~v~~lida~~~~~s~~~~~~~~~~~~~~~~~ 274 (481) T protein:vir:10 213 -TYHR------V--EEVEHYYNDVPIIEYLND---------QFKQGDFENVIALIDLYDSAQSDTANYMTDLNDAMLAII 274 (481) T ss_pred -ceee------c--ccccccCCceeEEEeecC---------CCCCCchhhHHHHHHHHHHHHHHHHHHHHHhcCceeEee Confidence 0000 0 112245677788888642 469999999999999999999999999975544444422 Q ss_pred HHhccCCCCcccccCccCCcccceeeeec----CCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCC Q lcl|Aclame:pro 308 VMLRTVPDESGMPPPQVFDPDVNVYKSIR----MGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGR 383 (517) Q Consensus 308 ~~l~~~~~~~~~~~~~~fd~~~~~y~~~~----~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~ 383 (517) .+...++... ..+..+...+.... +.++++.++.++++++.+++...++.+.+.|...++.+.-+++ ..+ T Consensus 275 g~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~-~~~ 348 (481) T protein:vir:10 275 GNVDLDSEDA-----KAFRDANMIHLEPGTNANGSEGKAEVKYVYKQYDVAGVEAYKKRLQNDIHKYTNTPDLNDE-QFS 348 (481) T ss_pred cCcCCCccch-----hhhhhccceeccccccccCCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCcccccc-ccc Confidence 2322222111 11222222232222 2345567889999999999999999988888777776544444 234 Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHH Q lcl|Aclame:pro 384 SMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAK 463 (517) Q Consensus 384 ~~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~ 463 (517) +..||.+++++.+.+.+++..+++.|+.+|++++++++.++.. .++......++++.|+++++.|..+.++.+++++ T Consensus 349 ~n~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~---~~~~~~~~~~i~v~f~~~~~~~~~~~a~~~~kl~ 425 (481) T protein:vir:10 349 GVQSGESMKYKLFGLEQVRAIKERLFKKGLMKRYKLLLNNVNL---TGLKQHNYAELTITFTPNLPKSMMESINAFNALS 425 (481) T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCCCccccceeeEEeCCCCCcCHHHHHHHHHHHh Confidence 6678999999999999999999999999999999999987654 2334445567999999999999999999998874 Q ss_pred hcCCCCHHHHHHhhCCCCHHHHHHHHHHHHHhccccCCCCC----c-cccCCCCCCCCC Q lcl|Aclame:pro 464 TFGFIPTVEAIQRIFKVPKKTAEQWLEEIRKDQIELDPVTI----S-QRAQKRMFGDEE 517 (517) Q Consensus 464 ~~G~~S~~~~l~~~~~~~eeea~~el~~i~~E~~~~~~~~~----~-~~~~~~~~G~ee 517 (517) |++|.+|++..+.+++ + +++|++||++|+.+..+... + ..++.+...|+| T Consensus 426 --g~is~et~~~~l~~i~-d-~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~dd~~ 480 (481) T protein:vir:10 426 --GGVSESTRLSLLDFID-N-PKEELEKMQEEEAQREKQADKRGYGEAFENHLNVDDSN 480 (481) T ss_pred --ccCChHHHHHhCCCCC-C-HHHHHHHHHHHHHHHHhhhhhccCCccCCCCCCCCCCC Confidence 8999999987664444 3 67899999888754333211 1 111122122222 No 25 >protein:vir:103951 Length: 511 # NCBI annotation: phage portal protein # Family: family:all:125 # MgeID: mge:1662 # MgeName: phiNM # Cross-refs: genbank:acc:YP_873988;genbank:gi:118430763;genbank:GeneID:4525445 Probab=100.00 E-value=3.5e-52 Score=302.66 Aligned_cols=452 Identities=9% Similarity=0.007 Sum_probs=300.9 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccc-cCccccccccccChHHHH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINS-QGKIQERDYMTLNLRKLS 79 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~-~~~~~~~~~~~ln~~~~i 79 (517) |.-++.|+++|.+... ....++.++++||.|+++.++.... ..+.+.+.+.++|+|+.| T Consensus 39 ~~~~~~i~~~i~~~~~--------------------~~~~r~~~l~~Yy~g~~~i~~~~~~~~~~~~~~~ki~~n~~k~I 98 (511) T protein:vir:10 39 LQNVNEVSKCIEHHMD--------------------YQRPRLKVLSDYYEGKTKNLVELTRRKEEYMADNRVAHDYASYI 98 (511) T ss_pred ccCHHHHHHHHHHHHH--------------------hhHHHHHHHHHHhcccCccccccCcccccccCcceeecchHHHH Confidence 3333334444332111 1235788899999999876644322 233344567889999999 Q ss_pred HHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe-CCeeEEEEE Q lcl|Aclame:pro 80 ADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD-NGEIEFSWA 158 (517) Q Consensus 80 ~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d-~g~~~i~~v 158 (517) +...+++|+++|++|++++. ..++.|+.++++|+|.....+++..++.+|.+|..+|+| +|++++.++ T Consensus 99 v~~~~~yl~g~p~~~~~~d~-----------~~~~~l~~~~~~n~~~~~~~~~~~~~~i~G~ay~~vy~dedg~~~i~~~ 167 (511) T protein:vir:10 99 SDFINGYFLGNPIQYQDDDK-----------DVLEAIEAFNDLNDVESHNRSLGLDLSIYGKAYEIMIRNQDDETRLYKS 167 (511) T ss_pred HHHHhhhhcccCceeecCch-----------HHHHHHHHHHhhcCHHHHHHHHHHHHHhcCeeEEEEEeCCCCceEEEEE Confidence 99999999999999987653 356889999999999999999999999999999999998 589999999 Q ss_pred cCCeEEEEEEcCC-ceEEEEEEEEEEE-EecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCccccccccc Q lcl|Aclame:pro 159 LANAFYPLRSNSN-GISEGVMKSVTTK-VIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELY 236 (517) Q Consensus 159 ~a~~~~P~~~~~~-~~~~~a~~~~~~~-~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~ 236 (517) +|.+++|++.+.. +...+++.++.+. .++...+...++|+|+.+++ |+ |...... ...+.. T Consensus 168 ~p~~~~~vydd~~~~~~~~~vr~~~~~~~d~~~~~~~~~~~iyt~~~i------~~-----~~~~~~~----~~~~~~-- 230 (511) T protein:vir:10 168 DAMSTFVIYDNTIERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGV------YR-----YLTSRTN----GLKLTP-- 230 (511) T ss_pred ccceeEEEEcCCCCCceEEEEEEEEeeecccCccceEEEEEEEeCCcE------EE-----EEecCCC----cccccc-- Confidence 9999999976654 3333433333332 22233334445677765431 11 2222111 111110 Q ss_pred CCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeecchHHhccCCCC Q lcl|Aclame:pro 237 EGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRTVFVSDVMLRTVPDE 316 (517) Q Consensus 237 ~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~l~~~~~~ 316 (517) .......++++.+|+++|+++ ..|.|+|++++++||+||.++|++++.++....++.|...+...+... T Consensus 231 --~~~~~~~~~~~~vPvv~f~nn---------~~g~gd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~g~~~~~~~~ 299 (511) T protein:vir:10 231 --RENGFESHSFERMPITEFSNN---------ERRKGDYEKVITLIDLYDNAESDTANYMSDLNDAMLLIKGNLNLDPVE 299 (511) T ss_pred --cccccccccCcceeEEEecCC---------CCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhCceeeeeccccCCchh Confidence 011123466788889998752 368999999999999999999999999987777766644433222111 Q ss_pred c-ccccCccCCcccceeeeec--CCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHHHH Q lcl|Aclame:pro 317 S-GMPPPQVFDPDVNVYKSIR--MGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVS 393 (517) Q Consensus 317 ~-~~~~~~~fd~~~~~y~~~~--~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a 393 (517) . .......+..+...+.... ..+++..++.++++++++.+...++.+.+.|...++.+.-+++ ..+|..||.++++ T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~e~~~~~L~~~I~~~s~~P~~~~~-~~~~n~Sg~Al~~ 378 (511) T protein:vir:10 300 VRKQKEANVLFLEPTVYADSEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNMKDD-NFSGTQSGEAMKY 378 (511) T ss_pred hccchhccceecccccccccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCcccccc-cccccchHHHHHH Confidence 1 1111111111111222211 2234556888999999999999999999888877765443322 2235678999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCCHHHH Q lcl|Aclame:pro 394 ENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTVEA 473 (517) Q Consensus 394 ~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~~~ 473 (517) +.+.+.+++..+++.|+.+|+++++.|+.+.....- .........|+|.|+++++.|..+.++++.+++ |++|.+++ T Consensus 379 ~~~~l~~k~~~k~~~f~~~l~~~~~li~~~~~~~~~-~~~~~d~~~i~i~f~~~~p~d~~~~~~~~~kl~--G~iS~et~ 455 (511) T protein:vir:10 379 KLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRS-IDANKDFNTVRYVYNRNLPKSLIEELKAYIDSG--GKISQTTL 455 (511) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-cccccccceeeEEeCCCCCcCHHHHHHHHHHHh--ccCcHHHH Confidence 999999999999999999999999999987654321 112223456899999999999999999998885 99999999 Q ss_pred HHhhCCCCHHHHHHHHHHHHHhccccCCCC---CccccCCC-----------CCCCCC Q lcl|Aclame:pro 474 IQRIFKVPKKTAEQWLEEIRKDQIELDPVT---ISQRAQKR-----------MFGDEE 517 (517) Q Consensus 474 l~~~~~~~eeea~~el~~i~~E~~~~~~~~---~~~~~~~~-----------~~G~ee 517 (517) +..++++++ +++|++||++|+.+..+.. ....+... ...++| T Consensus 456 ~~~l~~v~d--~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (511) T protein:vir:10 456 MSLFSFFQD--PELEVKKIEEDEKESIKKAQKGIYKDPRDINDDEQDDDTKDTVDKKE 511 (511) T ss_pred HHhCCCCCC--HHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCcccCcccccC Confidence 877755554 5678999998865421110 01111111 111111 No 26 >protein:vir:95113 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1549 # MgeName: X2 # Cross-refs: genbank:acc:YP_240817;genbank:gi:66394677;genbank:GeneID:5133907 Probab=100.00 E-value=2.6e-52 Score=303.36 Aligned_cols=446 Identities=13% Similarity=0.072 Sum_probs=290.1 Q ss_pred hHHHHHH---------HHHHHHHHhhc--ccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccc---cC---cc Q lcl|Aclame:pro 3 VIQRIKN---------FFKRGGYALSG--QTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINS---QG---KI 65 (517) Q Consensus 3 ~~~~ik~---------~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~---~~---~~ 65 (517) |+..++. +|..+...... +-|++.. .-......++.++++||.|+++.++.... .+ .. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i-----~~~~~~~~~~~~~~~Yy~g~~~i~~r~~~~~~~~~~~~~ 75 (474) T protein:vir:95 1 MFNIIRMPWDKPYGEEVVEQLKPQFETQEEMIIRLI-----DDHRKQLDKITVGQRYYDKDNDIVKQMKKVDVYGNIDYD 75 (474) T ss_pred CcceeecCCCCchhhHHHHhhhhccCChHHHHHHHH-----HHHHHHHHHHHHHHHHhcccCchhccccccccccccccc Confidence 3322221 22222211111 1111111 11123456788899999999865432211 11 12 Q ss_pred ccccccccChHHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEE Q lcl|Aclame:pro 66 QERDYMTLNLRKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVR 145 (517) Q Consensus 66 ~~~~~~~ln~~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k 145 (517) +...+.++|+++.|+...+++||++|+++++++. ..++.|+.+++ |+|...+.++++.++++|.+|++ T Consensus 76 ~~~~ki~~n~~~~Ivd~~~~~l~g~p~~~~~~d~-----------~~~~~l~~~~~-n~~~~~~~e~~~~~~~~G~~~~~ 143 (474) T protein:vir:95 76 KPDWRITTNFHQNLVDQKVSYVASKPVTYSCEDE-----------SVLKIIHDVLD-TRWDNKLIDILTATSNKGIDWLQ 143 (474) T ss_pred cccceeccchHHHHHHHHHhhhccCCceeccCch-----------HHHHHHHHHHh-ccHHHHHHHHHHHHhhcCcEEEE Confidence 2234678999999999999999999999987653 35677888876 67999999999999999999999 Q ss_pred EEEe-CCeeEEEEEcCCeEEEEEEcCC-ceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCc Q lcl|Aclame:pro 146 PYVD-NGEIEFSWALANAFYPLRSNSN-GISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNE 223 (517) Q Consensus 146 ~~~d-~g~~~i~~v~a~~~~P~~~~~~-~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~ 223 (517) +|+| +|++++.+++|.+++|++.+.. +...++ ++.+.. . ... .++.|+.... .. |..... T Consensus 144 v~~d~~~~~~i~~~~p~~~~~v~d~~~~~~~~~~-i~~~~~-~--~~~---~~~~y~~~~~--------~~---~~~~~~ 205 (474) T protein:vir:95 144 VYINENGEMKLFRVPAEQAIPIWVDKEREELKSF-IRYYKF-N--NEE---KVEFWTDTTV--------TY---YVLENG 205 (474) T ss_pred EEecCCCceEEEEEcccceEEEEcCCCCCceEEE-EEEEEE-c--Cee---EEEEEeCCeE--------EE---EEEcCC Confidence 9997 5889999999999999976543 333333 322221 1 111 2344443321 11 111111 Q ss_pred cccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhcccee Q lcl|Aclame:pro 224 GEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRTV 303 (517) Q Consensus 224 ~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i 303 (517) .+. ..++.. ..........++++++||++|+| +|.|+|+|++++++||+||.++|+++++++.....+ T Consensus 206 -~~~-~~~~~~-~~~~~~~~~~~~~g~iPvv~~~n---------n~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~p~ 273 (474) T protein:vir:95 206 -GLI-PDYYYG-ANHIQSHFSNGNWGRVPFIAFKN---------NPEEVSDIWMYKSLIDAIDKRLSDAQNMFDESVELI 273 (474) T ss_pred -ccc-cccccC-cccccccccccCCCccceEeecC---------CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCce Confidence 000 001111 01122334456788899999875 267999999999999999999999999997666556 Q ss_pred ecchHHhccCCCCcccccCccCCcccceeeeecCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCC Q lcl|Aclame:pro 304 FVSDVMLRTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGR 383 (517) Q Consensus 304 ~v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~ 383 (517) ++..++ .+.....|..+...+..+..+ +++.++.++++++++++...++.+.+.|...++...-++ ...+ T Consensus 274 lv~~g~--------~~~~~~~~~~~~~~~~~i~~~-~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~-~~~~ 343 (474) T protein:vir:95 274 YILKGY--------EGQDLEEFMRGLKYYKAINVD-GDGGVETIQVEVPVSSTKEYIDLMRAYIMEFGQGVDFQT-DKFG 343 (474) T ss_pred eeeecC--------Ccccchhhhhhhhccceeecc-CCCceeEEeecCCHHHHHHHHHHHHHHHHHHhCCccccc-cccc Confidence 553322 111112244455556666654 344688999999999999999999998887776543221 1223 Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHH Q lcl|Aclame:pro 384 SMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAK 463 (517) Q Consensus 384 ~~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~ 463 (517) +..||.+++++.+.+.++++.+++.|+.+|+++++.|+.+.. ...+...|+|+|+++++.|..+.++.+ + T Consensus 344 ~n~Sg~Alk~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~g-------~~~d~~~i~v~f~~~~p~d~~e~a~~~---~ 413 (474) T protein:vir:95 344 SAPSGIALKFLYGNLDLKANKLKNKATVAIQELIGFIIDFNN-------LKMDVKDIEISFNFNRMMNDAEQSQII---A 413 (474) T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCcccceeeEEeccCCCcCHHHHHHHH---H Confidence 567899999999999999999999999999999999987632 233556799999999999987777654 4 Q ss_pred hcCCCCHHHHHHhhCCCCHHHHHHHHHHHHHhccccCCC---CCccc----cCCCCCCCCC Q lcl|Aclame:pro 464 TFGFIPTVEAIQRIFKVPKKTAEQWLEEIRKDQIELDPV---TISQR----AQKRMFGDEE 517 (517) Q Consensus 464 ~~G~~S~~~~l~~~~~~~eeea~~el~~i~~E~~~~~~~---~~~~~----~~~~~~G~ee 517 (517) .+|+||.++++.+++++++ +++|++||++|+.+.... ..+.. .+....+++| T Consensus 414 ~~g~iS~et~i~~l~~v~d--~~~E~~ri~~E~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 472 (474) T protein:vir:95 414 QSQYLSRETLVKSSPLVDD--YKAELERIEQEQMEYNKQLPNLDDGGADGAQQQERSNDKE 472 (474) T ss_pred hcCCCchHHHHHhCCCCCC--HHHHHHHHHHHHHHHHhcccccccccCCCCcCCCCCccCC Confidence 5699999999987655544 567999999887432111 11111 1111122222 No 27 >protein:vir:97171 Length: 512 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1654 # MgeName: 85 # Cross-refs: genbank:acc:YP_239722;genbank:gi:66394876;genbank:GeneID:5130904 Probab=100.00 E-value=1.6e-51 Score=299.12 Aligned_cols=452 Identities=9% Similarity=0.024 Sum_probs=298.3 Q ss_pred Cch--------HHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccc-cCcccccccc Q lcl|Aclame:pro 1 MKV--------IQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINS-QGKIQERDYM 71 (517) Q Consensus 1 m~~--------~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~-~~~~~~~~~~ 71 (517) |.= .+.|+++|.+ |. .....++.++.+||.|+++.++.... ..+.+.+.+. T Consensus 31 ~~~~e~~~~~~~~~i~~~i~~---------------~~-----~~~~~r~~~l~~YY~g~~~i~~~~~~~~~~~~~~~ki 90 (512) T protein:vir:97 31 YDGTESDLLQNINEVSKYIEH---------------HM-----DYQRPRLKVLSDYYEGKTKNLVELTRRKEEYMADNRV 90 (512) T ss_pred cCchhhhhhhhHHHHHHHHHH---------------HH-----HhhHHHHHHHHHHhcccCccccccCcccccccCccee Confidence 211 1233333332 11 12245788899999999876644322 2334445678 Q ss_pred ccChHHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe-C Q lcl|Aclame:pro 72 TLNLRKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD-N 150 (517) Q Consensus 72 ~ln~~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d-~ 150 (517) ++|+|+.|+...+++|+++|+++++++. ..++.|+.++++|+|...+.+++..|+++|.+|+++|+| + T Consensus 91 ~~n~~k~Ivd~~~~yl~g~p~~~~~~d~-----------~~~~~l~~~~~~n~~~~~~~~~~~~~~i~G~ay~~vy~ded 159 (512) T protein:vir:97 91 AHDYASYISDFINGYFLGNPIQCQDDDK-----------DVLEAIEAFNDLNDVESHNRSLGLDLSIYGKAYELMIRNQD 159 (512) T ss_pred ecchHHHHHHHHhhhhcccCceeccCCh-----------HHHHHHHHHHhhcCHHHHHHHHHHHHHhcCeEEEEEEeCCC Confidence 8999999999999999999999987653 356789999999999999999999999999999999997 6 Q ss_pred CeeEEEEEcCCeEEEEEEcCC-ceEEEEEEEEEEE-EecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCc Q lcl|Aclame:pro 151 GEIEFSWALANAFYPLRSNSN-GISEGVMKSVTTK-VIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGK 228 (517) Q Consensus 151 g~~~i~~v~a~~~~P~~~~~~-~~~~~a~~~~~~~-~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~ 228 (517) |++++.+++|.+++|++.+.. +...+++.++.+. .++.......++|+++.+++ |+ |...+.. T Consensus 160 ~~~~i~~~~p~~~~~iyd~~~~~~~~~~vr~~~~~~~~~~~~~~~~~~~vyt~~~i------~~-----~~~~~~~---- 224 (512) T protein:vir:97 160 DETRLYKSDAMSTFVIYDNTIERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGV------YR-----YLTSRTN---- 224 (512) T ss_pred CceEEEEEcccceEEEEcCCCCCceEEEEEEEEeeeccccccceEEEEEEEeCCcE------EE-----EEecCCC---- Confidence 899999999999999966543 3444444333332 22223333455677665431 21 2222111 Q ss_pred ccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeecchH Q lcl|Aclame:pro 229 RIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRTVFVSDV 308 (517) Q Consensus 229 ~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~ 308 (517) ...+. ........++++.+|+++|+++ +.|.|+|++++++||+||.++|++++.++.....+.|-.. T Consensus 225 ~~~~~----~~~~~~~~~~~g~vPvv~~~nn---------~~~~gd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~G 291 (512) T protein:vir:97 225 GLKLT----PRENGFESHSFERMPITEFSNN---------ERRKGDYEKVITLIDLYDNAESDTANYMSDLNDAMLLIKG 291 (512) T ss_pred ccccc----ccccccccccCcccceEeecCC---------CCCCCchhhhHHHHHHHHHHHHHHHHHHHHhcCceeeeec Confidence 11111 0112233467888899988752 5699999999999999999999999999876666666333 Q ss_pred HhccCCCC-cccccCccC--Ccccceeeeec-CCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCc Q lcl|Aclame:pro 309 MLRTVPDE-SGMPPPQVF--DPDVNVYKSIR-MGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRS 384 (517) Q Consensus 309 ~l~~~~~~-~~~~~~~~f--d~~~~~y~~~~-~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~ 384 (517) +...+... ........+ ........... ..++++.++.++++++++.+...++.+.+.|...++.+.-+++ ..+| T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~e~~~~~L~~~I~~~s~~p~~~~~-~~~g 370 (512) T protein:vir:97 292 NLNLDPVEVRKQKEANVLFLEPTVYENRDTGIETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNMKDD-NFSG 370 (512) T ss_pred CccCCchhhhhhhhcccccccccchhhcccccCCCCCcceEEEeecCCHHHHHHHHHHHHHHHHHHhCCcccCcc-cccc Confidence 32111111 100000000 00101111111 1234556888999999999999999988888777765443332 1235 Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHh Q lcl|Aclame:pro 385 MKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKT 464 (517) Q Consensus 385 ~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~ 464 (517) ..||.+++++.+.+.+++..+++.|+.+|++++++|+.+.....-. ........|++.|+++++.|..+.++.+.+++ T Consensus 371 n~Sg~Al~~~~~~l~~ka~~k~~~f~~~l~~~~~li~~~~~~~~~~-~~~~d~~~i~~~f~~~~p~~~~e~~~~~~kl~- 448 (512) T protein:vir:97 371 TQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSI-DANKDFNTVRYVYNRNLPKSLIEELKAYIDSG- 448 (512) T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccccccccceEEeCCCCCcCHHHHHHHHHHHh- Confidence 6789999999999999999999999999999999999876543211 12223446899999999999999999888774 Q ss_pred cCCCCHHHHHHhhCCCCHHHHHHHHHHHHHhccccCCC---CCccccCCC-----------CCCCCC Q lcl|Aclame:pro 465 FGFIPTVEAIQRIFKVPKKTAEQWLEEIRKDQIELDPV---TISQRAQKR-----------MFGDEE 517 (517) Q Consensus 465 ~G~~S~~~~l~~~~~~~eeea~~el~~i~~E~~~~~~~---~~~~~~~~~-----------~~G~ee 517 (517) |++|.++++.+++++++ +++|++||++|+.+..+. .....+... ...++| T Consensus 449 -giiS~et~~~~l~~v~d--~~~E~eri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (512) T protein:vir:97 449 -GKISQTTLMSLFSFFQD--PELEVKKIEEDEKESIKKAQKGIYKDPRDINDDEQDDDTKDTVDKKE 512 (512) T ss_pred -ccCchHHHHHhCCCCCC--HHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccccC Confidence 99999999977755554 667899998886532111 011111110 111111 No 28 >protein:vir:9306 Length: 511 # NCBI annotation: phi Mu50B-like protein # Family: family:all:125 # MgeID: mge:165 # MgeName: phi 11 # Cross-refs: genbank:acc:NP_803284;genbank:gi:29028594;genbank:GeneID:1258040 Probab=100.00 E-value=2.2e-51 Score=298.36 Aligned_cols=452 Identities=10% Similarity=0.023 Sum_probs=298.1 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccc-cCccccccccccChHHHH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINS-QGKIQERDYMTLNLRKLS 79 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~-~~~~~~~~~~~ln~~~~i 79 (517) ....+.|+++|.+ |. .....++.++++||.|+++.++.... ..+.+...+.++|+|+.| T Consensus 39 ~~~~~~i~~~i~~---------------~~-----~~~~~r~~~l~~Yy~g~~~il~~~~~~~~~~~~~~ki~~n~~k~I 98 (511) T protein:vir:93 39 LQNVNEVSKYIEH---------------HM-----DYQRPRLKVLSDYYEGKTKNLVELTRRKEEYMADNRVAHDYASYI 98 (511) T ss_pred hccHHHHHHHHHH---------------HH-----HhhHHHHHHHHHHhcccCccccccCcCcccccCcceeecchHHHH Confidence 1122223333322 11 12345788899999999876644322 223334457889999999 Q ss_pred HHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe-CCeeEEEEE Q lcl|Aclame:pro 80 ADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD-NGEIEFSWA 158 (517) Q Consensus 80 ~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d-~g~~~i~~v 158 (517) +...+++|+++|+++++++. ..++.|+.++++|+|.....+++..|+.+|.+|+.+|+| +|.+++.++ T Consensus 99 v~~~~~yl~g~p~~~~~~d~-----------~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~ay~~vy~de~~~~~i~~~ 167 (511) T protein:vir:93 99 SDFINGYFLGNPIQYQDDDK-----------DVLEVIEAFNDLNDVESHNRSLGLDLSIYGKAYELMIRNQDDETRLYKS 167 (511) T ss_pred HHHHhhhhcccCeeeccCCh-----------HHHHHHHHHHhhcCHhHHHHHHHHHHHhcCeeEEEEEeCCCCceEEEEE Confidence 99999999999999987653 456889999999999999999999999999999999997 688999999 Q ss_pred cCCeEEEEEEcCC-ceEEEEEEEEEEE-EecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCccccccccc Q lcl|Aclame:pro 159 LANAFYPLRSNSN-GISEGVMKSVTTK-VIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELY 236 (517) Q Consensus 159 ~a~~~~P~~~~~~-~~~~~a~~~~~~~-~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~ 236 (517) +|.+++|++.+.. +...+++.++... .++.......++|+|+.+.+ |+ |...+.. ...+.. T Consensus 168 ~p~~~~~vydd~~~~~~~~~vr~~~~~~~~~~~~~~~~~~~iyt~~~i------~~-----~~~~~~~----~~~~~~-- 230 (511) T protein:vir:93 168 DAMSTFVIYDNTIERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGV------YR-----YLTSRTN----GLKLTP-- 230 (511) T ss_pred ccceeEEEEcCCCCCceEEEEEEEEeeeccccccceEEEEEEEeCCcE------EE-----EEecCCC----cccccc-- Confidence 9999999976543 3333333333222 23333344556777776531 11 2222211 111110 Q ss_pred CCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeecchHHhccCCCC Q lcl|Aclame:pro 237 EGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRTVFVSDVMLRTVPDE 316 (517) Q Consensus 237 ~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~l~~~~~~ 316 (517) .......++++.+|+++|+|+ +.|.|+|++++++||+||.++|++++.++....++.|...+...+... T Consensus 231 --~~~~~~~~~~g~vPvv~~~nn---------~~g~gd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~G~~~~~~~~ 299 (511) T protein:vir:93 231 --RENGFESHSFERMPITEFSNN---------ERRKGDYEKVITLIDLYDNAESDTANYMSDLNDAMLLIKGNLNLDPVE 299 (511) T ss_pred --ccccccccCCCccceEEecCC---------CCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCcceeeecCcccCchh Confidence 011223467788889988752 468999999999999999999999999986666666644332211111 Q ss_pred c-ccccCccCCcccceeeeec--CCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHHHH Q lcl|Aclame:pro 317 S-GMPPPQVFDPDVNVYKSIR--MGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVS 393 (517) Q Consensus 317 ~-~~~~~~~fd~~~~~y~~~~--~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a 393 (517) . .......+......+.... ..++++.++.+++++++++....++.+.+.|...++.+.-+++ ..+|..||.+++. T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~~I~~~s~~P~~~~~-~~~~n~Sg~Al~~ 378 (511) T protein:vir:93 300 VRKQKEANVLFLEPTVYADSEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNMKDD-NFSGTQSGEAMKY 378 (511) T ss_pred hcccccccceecccccccccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCcccccc-cccccchHHHHHH Confidence 1 0000011111111111111 2245567888999999999999999988888777766543322 2236678999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCCHHHH Q lcl|Aclame:pro 394 ENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTVEA 473 (517) Q Consensus 394 ~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~~~ 473 (517) +.+.+.+++..+++.|+.+|+++++.|+.+..... ..........+++.|++++|.|..++++++.++ +|+||.+++ T Consensus 379 ~~~~l~~k~~~k~~~f~~~l~~~~~li~~~l~~~~-~~~~~~d~~~i~~~f~~~~p~n~~e~~~~~~kl--~g~iS~et~ 455 (511) T protein:vir:93 379 KLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTW-SIDANKDFNTVRYVYNRNLPKSLIEELKAYIDS--GGKISQTTL 455 (511) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CcccccccccceEEeCCCCCCCHHHHHHHHHHH--hccCchHHH Confidence 99999999999999999999999999998755321 111122344689999999999999999988877 599999999 Q ss_pred HHhhCCCCHHHHHHHHHHHHHhccccC----------CCCCcccc--C--CCCCCCCC Q lcl|Aclame:pro 474 IQRIFKVPKKTAEQWLEEIRKDQIELD----------PVTISQRA--Q--KRMFGDEE 517 (517) Q Consensus 474 l~~~~~~~eeea~~el~~i~~E~~~~~----------~~~~~~~~--~--~~~~G~ee 517 (517) +..++++++ +++|++||++|+.+.. +...++.. + .....++| T Consensus 456 ~~~l~~v~d--~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (511) T protein:vir:93 456 MSLFSFFQD--PELEVKKIEEDEKESIKKAQKGIYKDPRDINDDEQDDDTKDTVDKKE 511 (511) T ss_pred HHhCCCCCC--HHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccccccC Confidence 877755544 5678999988764321 11111110 0 00111111 No 29 >protein:vir:106571 Length: 499 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1598 # MgeName: Lj965 # Cross-refs: genbank:acc:NP_958580;genbank:gi:41179240;genbank:GeneID:2717107 Probab=100.00 E-value=1.5e-51 Score=299.16 Aligned_cols=451 Identities=10% Similarity=-0.016 Sum_probs=294.7 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccChHHHHH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLRKLSA 80 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~~~i~ 80 (517) |-++-. +.++.... .+..+.+..+..+- .....++.++++||.|+++-+ ++....+.+...+.++|+++.|+ T Consensus 1 ~~~~~~-~~~~~~~~-~~~~~~i~~~i~~~-----~~~~~~~~~l~~Yy~g~~~i~-~~~~~~~~~~~~ki~~n~~~~Iv 72 (499) T protein:vir:10 1 MAVVID-KDLLDDVN-EPNIEAINYAIREL-----QNRKKRLDKLSDYYNGKQEIE-KHEFDNATVEAANVMVNHAKYIT 72 (499) T ss_pred Cccchh-hhHHhhhh-cCCHHHHHHHHHHH-----HHHHHHHHHHHHHhccccchh-cCCcCcCCCCcceeecchHHHHH Confidence 433210 00100000 00001111111110 122457788899999997544 33334445556778899999999 Q ss_pred HHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeC-C-------- Q lcl|Aclame:pro 81 DVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDN-G-------- 151 (517) Q Consensus 81 ~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~-g-------- 151 (517) ...+++||++|+++++++. ..++.|++++++|+|...+.+++..++.+|.+|..+|++. | T Consensus 73 ~~~~~~l~g~p~~~~~~~~-----------~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~~~~g~~~~~~~~ 141 (499) T protein:vir:10 73 DMNVGFMTGNPVKYVAEKG-----------KNIDDILEVFNQIDIHKHDIELEKDLSVFGYGYELLYLKKTDPISVRDEL 141 (499) T ss_pred HHHhhhhcccCceeecCCh-----------hHHHHHHHHHhhcCHhHHHHHHHHHHHhcCceEEEEEecccccccccccc Confidence 9999999999999987653 3456788899999999999999999999999999999984 3 Q ss_pred ---------eeEEEEEcCCeEEEEEEcCCc-eEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecC Q lcl|Aclame:pro 152 ---------EIEFSWALANAFYPLRSNSNG-ISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSD 221 (517) Q Consensus 152 ---------~~~i~~v~a~~~~P~~~~~~~-~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~ 221 (517) .+++..++|.++||++.+..+ ...+++.++... ..++...++.+|+|+.+.+ .. |... T Consensus 142 ~~~~~~~~~~~~~~~v~p~~~~~v~~d~~~~~~~~~i~~~~~~-~~~~~~~~~~~~iyt~~~i---------~~--~~~~ 209 (499) T protein:vir:10 142 GNEKLTPNTELKIEVIDPRATVVVCDDTVEHDPLFAVFTQEKK-DLEGNTNGYSITVYMPQRI---------VE--YRTK 209 (499) T ss_pred cccccccccceEEEEEcccceEEEecCCCCcceEEEEEEEEEe-ecCCCceEEEEEEEeCCeE---------EE--EEec Confidence 367899999999999776554 344444443332 2223344566788877642 11 2222 Q ss_pred CccccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccc Q lcl|Aclame:pro 222 NEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQR 301 (517) Q Consensus 222 ~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~ 301 (517) +........++ ....-++++++|+++|+| ++.|+|+|+++++|||+||.++|++++.++.... T Consensus 210 ~~~~~~~~~~~--------~~~~~~~~g~vPvv~~~n---------~~~~~~d~e~v~~liD~~~~~~S~~~~~~~~~~~ 272 (499) T protein:vir:10 210 TTMEVSANDPI--------VYDGENLFGAVPIIEFRN---------NEERQGDFEQLISLIDAYNLLQTDRISDKEAFVD 272 (499) T ss_pred CCccccCccee--------cccccCCCCccceEEecC---------CCCCCCchHhHHHHHHHHHHHHHHHHHHHHHhcC Confidence 21111100000 111235778899999975 2569999999999999999999999999965544 Q ss_pred eeec-chHHhccCCCCcccccCccCCcccceeeeecC-CCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccc Q lcl|Aclame:pro 302 TVFV-SDVMLRTVPDESGMPPPQVFDPDVNVYKSIRM-GTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFS 379 (517) Q Consensus 302 ~i~v-~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~~-~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~ 379 (517) .+.+ ...-+..+.+ +......+..... .+++..+++++++++.+++...++.+.+.|...++.+.-+++ T Consensus 273 ~~lv~~G~~~~~~~~---------~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~ 343 (499) T protein:vir:10 273 ALLVTFGFGLGDDKD---------DIQRLKRGAIEAPPREEGADIEWLTKSFDETQVNLLSQSIENDIHKISYVPNMNDE 343 (499) T ss_pred ceeeeecCccccccc---------hhhhhhhcceeccCCCCCCcceEEeccCCHHHHHHHHHHHHHHHHHHhCcccCCch Confidence 4444 2211111111 0011111111111 234445889999999999999999999988887765533322 Q ss_pred cCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHH Q lcl|Aclame:pro 380 FDGRSMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFY 459 (517) Q Consensus 380 ~~~~~~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~ 459 (517) ..+|..||.+++++.+.+.+++..+++.|+.+|++++++|+.+++.. +...+...++|.|+++++.|..+.++.+ T Consensus 344 -~~~gn~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~----~~~~d~~~i~i~f~~~~p~n~~e~~~~~ 418 (499) T protein:vir:10 344 -KFMGNVSGEAMKFKLFGLENLLSIKQRYFFDGLRRRLKLIQTIVNIK----GANDDASGCKISLVANIPSNLSDVVNNV 418 (499) T ss_pred -hhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----CCccccccceEEeCCCCCCCHHHHHHHH Confidence 12456789999999999999999999999999999999999886532 2334456799999999999999999999 Q ss_pred HHHHhcCCCCHHHHHHhhCCCCHHHHHHHHHHHHHhccccCC----CCCccccCCCCC---------CCCC Q lcl|Aclame:pro 460 GQAKTFGFIPTVEAIQRIFKVPKKTAEQWLEEIRKDQIELDP----VTISQRAQKRMF---------GDEE 517 (517) Q Consensus 460 ~~~~~~G~~S~~~~l~~~~~~~eeea~~el~~i~~E~~~~~~----~~~~~~~~~~~~---------G~ee 517 (517) +++ +|++|.++++.+++++++ +++|++||++|+.+... ...+++++.+.. ++.| T Consensus 419 ~kl--~g~iS~et~~~~l~~v~d--~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (499) T protein:vir:10 419 KNA--DGIIPRKYTYSWLPDVDN--PQDVIDEMNQQDAETIKKNQEALRGQDPDRLELEDKQDDSSENDKE 485 (499) T ss_pred HHH--hccCChHHHHHhCCCCCC--HHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCcccCCCCCC Confidence 987 599999999987655554 56788999887643110 011111111111 1111 No 30 >protein:vir:94498 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1508 # MgeName: 88 # Cross-refs: genbank:acc:YP_240672;genbank:gi:66396340;genbank:GeneID:5133762 Probab=100.00 E-value=3.7e-52 Score=302.56 Aligned_cols=446 Identities=14% Similarity=0.089 Sum_probs=288.9 Q ss_pred hHHHHHH---------HHHHHHHHhhc--ccchhhhccccCcCCHHHHHHHHHHHHHhcCCCccccccc---cc---Ccc Q lcl|Aclame:pro 3 VIQRIKN---------FFKRGGYALSG--QTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYIN---SQ---GKI 65 (517) Q Consensus 3 ~~~~ik~---------~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~---~~---~~~ 65 (517) ||..++. .+......... +.|++... --.....++.++++||.|+++.+.... .. ... T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~-----~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~ 75 (474) T protein:vir:94 1 MFNIIRMPWDKPYGEEVVEQLKPQFETQEEMIVRLID-----DHRKQLDKITVGQRYYDKDNDIVKQMKKVDVHGNIDYD 75 (474) T ss_pred CcccccccCCCchhhHHHHhhhhcccCHHHHHHHHHH-----HHHHHHHHHHHHHHHhccccchhcccchhccccccccc Confidence 3333222 11111111111 11111110 011235678899999999986543211 11 122 Q ss_pred ccccccccChHHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEE Q lcl|Aclame:pro 66 QERDYMTLNLRKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVR 145 (517) Q Consensus 66 ~~~~~~~ln~~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k 145 (517) +...+.++|+++.|+...|++||++++++++++. ..++.|+.+++ |+|...+.++++.++++|.+|++ T Consensus 76 ~~~~ki~~n~~k~Ivd~~~~~l~g~p~~~~~~d~-----------~~~~~l~~~~~-n~~~~~~~e~~~~~~~~G~~~~~ 143 (474) T protein:vir:94 76 KPDWRITTNFHQNLVDQKVSYVASKPVTYSCEDE-----------NVLKVIHDVLD-TRWDNKLIDILTATSNKGIDWLQ 143 (474) T ss_pred cCcceeecchHHHHHHHHHhhhhcCCceeccCcH-----------HHHHHHHHHHh-ccHHHHHHHHHHHHhhcCceEEE Confidence 2344678999999999999999999999987653 35677888775 67999999999999999999999 Q ss_pred EEEe-CCeeEEEEEcCCeEEEEEEcCC-ceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCc Q lcl|Aclame:pro 146 PYVD-NGEIEFSWALANAFYPLRSNSN-GISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNE 223 (517) Q Consensus 146 ~~~d-~g~~~i~~v~a~~~~P~~~~~~-~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~ 223 (517) +|+| +|++++.+++|.+++|++.+.. +...+++.+ +.. . +.. +++.|+...+ .. |...+. T Consensus 144 ~~~d~~~~~~i~~~~p~~~~~v~d~~~~~~~~~~ir~-~~~--~-~~~---~~~~yt~~~~--------~~---y~~~~~ 205 (474) T protein:vir:94 144 VYINENGEMKLFRVPAEQAIPIWVDKEREELKSFIRY-YKF--N-NEE---KVEFWTDTTV--------TY---YVLENG 205 (474) T ss_pred EEecCCCeeEEEEEcccceEEEEcCCCCCceEEEEEE-EEe--c-CeE---EEEEEeCCeE--------EE---EEEcCC Confidence 9997 5789999999999999976543 333333332 221 1 111 2455544321 11 211111 Q ss_pred cccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhcccee Q lcl|Aclame:pro 224 GEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRTV 303 (517) Q Consensus 224 ~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i 303 (517) . .+....... ....+....++++++||++|+++ +.|+|+|++++++||+||.++|++++.++.....+ T Consensus 206 ~-~~~~~~~~~--~~~~~~~~~~~~g~vPvv~~~nn---------~~g~sd~e~v~~liDa~n~~~s~~~~~~~~~~~~~ 273 (474) T protein:vir:94 206 G-LIPDYYYGA--NHVQSHFSNGNWGRVPFIAFKNN---------PEEVSDIWMYKSIIDAIDKRLSDAQNMFDESVELI 273 (474) T ss_pred c-cccccccCc--CcccccccccCCCccceEEecCC---------cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCce Confidence 1 111111100 11223345578899999999752 57999999999999999999999999997655555 Q ss_pred ecchHHhccCCCCcccccCccCCcccceeeeecCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCC Q lcl|Aclame:pro 304 FVSDVMLRTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGR 383 (517) Q Consensus 304 ~v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~ 383 (517) +|-..+ .......|..+...+..+..+ ++++++.++++++++++...++.+.+.|...++.+.-++ ...+ T Consensus 274 lv~~g~--------~~~~~~~~~~~~~~~~~i~~~-~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~-~~~~ 343 (474) T protein:vir:94 274 YILKGY--------EGEDLEEFMRGLKYYKAINVD-GDGGVETIQVEVPVSSTKEYIDLMRVYIMEFGQGVDFQT-DKFG 343 (474) T ss_pred eeeecC--------Ccccchhhhhhhhccceeecc-CCCceeEEeecCCHHHHHHHHHHHHHHHHHHhCccccCc-cccc Confidence 552221 111111244444556666554 344689999999999999999999988888776542221 1123 Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHH Q lcl|Aclame:pro 384 SMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAK 463 (517) Q Consensus 384 ~~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~ 463 (517) |..||.+++++.+.+.+++..+++.|+.+|+++++.|+.+.. ...+...|.|+|+++++.|..+.++.+. T Consensus 344 ~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~-------~~~d~~~i~v~f~~~~p~~~~e~a~~~~--- 413 (474) T protein:vir:94 344 SAPSGIALKFLYGNLDLKANKLKNKATVAIQELISFIIDFNN-------LKTDVKDIEISFNFNRMMNDAEQSQIIA--- 413 (474) T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCcccceeeEEeccCcccCHHHHHHHHH--- Confidence 567899999999999999999999999999999999987642 2234567899999999999877776554 Q ss_pred hcCCCCHHHHHHhhCCCCHHHHHHHHHHHHHhcccc---CCCCCccccC----CC--CCCCCC Q lcl|Aclame:pro 464 TFGFIPTVEAIQRIFKVPKKTAEQWLEEIRKDQIEL---DPVTISQRAQ----KR--MFGDEE 517 (517) Q Consensus 464 ~~G~~S~~~~l~~~~~~~eeea~~el~~i~~E~~~~---~~~~~~~~~~----~~--~~G~ee 517 (517) .+|+||+++++.+++++++ +++|++||++|+.+. .+...+...+ .. .+++.| T Consensus 414 ~~g~iS~et~l~~l~~v~D--~~~E~eri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 474 (474) T protein:vir:94 414 QSQYLSRETLVKSSPLVDD--YKAELERIEQEQMEYNKQLPNLDDGGADGAQQQEGSNNKESE 474 (474) T ss_pred HcCCCCHHHHHHhCCCCCC--HHHHHHHHHHHHHHHHhhccccCCCCCCCcccCCCCcccccC Confidence 4699999999987755544 567899999887442 1111111111 11 111111 No 31 >protein:vir:97447 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1676 # MgeName: 92 # Cross-refs: genbank:acc:YP_240744;genbank:gi:66396413;genbank:GeneID:5133803 Probab=100.00 E-value=3.7e-52 Score=302.56 Aligned_cols=446 Identities=14% Similarity=0.089 Sum_probs=288.9 Q ss_pred hHHHHHH---------HHHHHHHHhhc--ccchhhhccccCcCCHHHHHHHHHHHHHhcCCCccccccc---cc---Ccc Q lcl|Aclame:pro 3 VIQRIKN---------FFKRGGYALSG--QTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYIN---SQ---GKI 65 (517) Q Consensus 3 ~~~~ik~---------~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~---~~---~~~ 65 (517) ||..++. .+......... +.|++... --.....++.++++||.|+++.+.... .. ... T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~-----~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~ 75 (474) T protein:vir:97 1 MFNIIRMPWDKPYGEEVVEQLKPQFETQEEMIVRLID-----DHRKQLDKITVGQRYYDKDNDIVKQMKKVDVHGNIDYD 75 (474) T ss_pred CcccccccCCCchhhHHHHhhhhcccCHHHHHHHHHH-----HHHHHHHHHHHHHHHhccccchhcccchhccccccccc Confidence 3333222 11111111111 11111110 011235678899999999986543211 11 122 Q ss_pred ccccccccChHHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEE Q lcl|Aclame:pro 66 QERDYMTLNLRKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVR 145 (517) Q Consensus 66 ~~~~~~~ln~~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k 145 (517) +...+.++|+++.|+...|++||++++++++++. ..++.|+.+++ |+|...+.++++.++++|.+|++ T Consensus 76 ~~~~ki~~n~~k~Ivd~~~~~l~g~p~~~~~~d~-----------~~~~~l~~~~~-n~~~~~~~e~~~~~~~~G~~~~~ 143 (474) T protein:vir:97 76 KPDWRITTNFHQNLVDQKVSYVASKPVTYSCEDE-----------NVLKVIHDVLD-TRWDNKLIDILTATSNKGIDWLQ 143 (474) T ss_pred cCcceeecchHHHHHHHHHhhhhcCCceeccCcH-----------HHHHHHHHHHh-ccHHHHHHHHHHHHhhcCceEEE Confidence 2344678999999999999999999999987653 35677888775 67999999999999999999999 Q ss_pred EEEe-CCeeEEEEEcCCeEEEEEEcCC-ceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCc Q lcl|Aclame:pro 146 PYVD-NGEIEFSWALANAFYPLRSNSN-GISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNE 223 (517) Q Consensus 146 ~~~d-~g~~~i~~v~a~~~~P~~~~~~-~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~ 223 (517) +|+| +|++++.+++|.+++|++.+.. +...+++.+ +.. . +.. +++.|+...+ .. |...+. T Consensus 144 ~~~d~~~~~~i~~~~p~~~~~v~d~~~~~~~~~~ir~-~~~--~-~~~---~~~~yt~~~~--------~~---y~~~~~ 205 (474) T protein:vir:97 144 VYINENGEMKLFRVPAEQAIPIWVDKEREELKSFIRY-YKF--N-NEE---KVEFWTDTTV--------TY---YVLENG 205 (474) T ss_pred EEecCCCeeEEEEEcccceEEEEcCCCCCceEEEEEE-EEe--c-CeE---EEEEEeCCeE--------EE---EEEcCC Confidence 9997 5789999999999999976543 333333332 221 1 111 2455544321 11 211111 Q ss_pred cccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhcccee Q lcl|Aclame:pro 224 GEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRTV 303 (517) Q Consensus 224 ~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i 303 (517) . .+....... ....+....++++++||++|+++ +.|+|+|++++++||+||.++|++++.++.....+ T Consensus 206 ~-~~~~~~~~~--~~~~~~~~~~~~g~vPvv~~~nn---------~~g~sd~e~v~~liDa~n~~~s~~~~~~~~~~~~~ 273 (474) T protein:vir:97 206 G-LIPDYYYGA--NHVQSHFSNGNWGRVPFIAFKNN---------PEEVSDIWMYKSIIDAIDKRLSDAQNMFDESVELI 273 (474) T ss_pred c-cccccccCc--CcccccccccCCCccceEEecCC---------cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCce Confidence 1 111111100 11223345578899999999752 57999999999999999999999999997655555 Q ss_pred ecchHHhccCCCCcccccCccCCcccceeeeecCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCC Q lcl|Aclame:pro 304 FVSDVMLRTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGR 383 (517) Q Consensus 304 ~v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~ 383 (517) +|-..+ .......|..+...+..+..+ ++++++.++++++++++...++.+.+.|...++.+.-++ ...+ T Consensus 274 lv~~g~--------~~~~~~~~~~~~~~~~~i~~~-~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~-~~~~ 343 (474) T protein:vir:97 274 YILKGY--------EGEDLEEFMRGLKYYKAINVD-GDGGVETIQVEVPVSSTKEYIDLMRVYIMEFGQGVDFQT-DKFG 343 (474) T ss_pred eeeecC--------Ccccchhhhhhhhccceeecc-CCCceeEEeecCCHHHHHHHHHHHHHHHHHHhCccccCc-cccc Confidence 552221 111111244444556666554 344689999999999999999999988888776542221 1123 Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHH Q lcl|Aclame:pro 384 SMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAK 463 (517) Q Consensus 384 ~~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~ 463 (517) |..||.+++++.+.+.+++..+++.|+.+|+++++.|+.+.. ...+...|.|+|+++++.|..+.++.+. T Consensus 344 ~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~-------~~~d~~~i~v~f~~~~p~~~~e~a~~~~--- 413 (474) T protein:vir:97 344 SAPSGIALKFLYGNLDLKANKLKNKATVAIQELISFIIDFNN-------LKTDVKDIEISFNFNRMMNDAEQSQIIA--- 413 (474) T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCcccceeeEEeccCcccCHHHHHHHHH--- Confidence 567899999999999999999999999999999999987642 2234567899999999999877776554 Q ss_pred hcCCCCHHHHHHhhCCCCHHHHHHHHHHHHHhcccc---CCCCCccccC----CC--CCCCCC Q lcl|Aclame:pro 464 TFGFIPTVEAIQRIFKVPKKTAEQWLEEIRKDQIEL---DPVTISQRAQ----KR--MFGDEE 517 (517) Q Consensus 464 ~~G~~S~~~~l~~~~~~~eeea~~el~~i~~E~~~~---~~~~~~~~~~----~~--~~G~ee 517 (517) .+|+||+++++.+++++++ +++|++||++|+.+. .+...+...+ .. .+++.| T Consensus 414 ~~g~iS~et~l~~l~~v~D--~~~E~eri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 474 (474) T protein:vir:97 414 QSQYLSRETLVKSSPLVDD--YKAELERIEQEQMEYNKQLPNLDDGGADGAQQQEGSNNKESE 474 (474) T ss_pred HcCCCCHHHHHHhCCCCCC--HHHHHHHHHHHHHHHHhhccccCCCCCCCcccCCCCcccccC Confidence 4699999999987755544 567899999887442 1111111111 11 111111 No 32 >protein:vir:99522 Length: 470 # NCBI annotation: putative protein # Family: family:all:125 # MgeID: mge:1559 # MgeName: Lj928 # Cross-refs: genbank:acc:NP_958533;genbank:gi:41179315;genbank:GeneID:2717160 Probab=100.00 E-value=4.2e-51 Score=296.77 Aligned_cols=440 Identities=11% Similarity=0.072 Sum_probs=294.3 Q ss_pred CchH-----------------------HHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccc Q lcl|Aclame:pro 1 MKVI-----------------------QRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVE 57 (517) Q Consensus 1 m~~~-----------------------~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~ 57 (517) |..+ +.|++++++ |. .....++.+.++||.|+++.+. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~---------------~~-----~~~~~~~~~l~~Yy~g~~~i~~ 60 (470) T protein:vir:99 1 MKDINYGRDKVTGNSSFIFPKGEKLTSNELLGFIAY---------------NE-----TVLKPRYRENMKLYLGKHKILT 60 (470) T ss_pred CccccCCcccccCCceEEeCCCCCcCHHHHHHHHHH---------------HH-----HhhHHHHHHHHHHhcccccccc Confidence 2221 122333221 11 1234577888999999987554 Q ss_pred cccccCccccccccccChHHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHH Q lcl|Aclame:pro 58 YINSQGKIQERDYMTLNLRKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTF 137 (517) Q Consensus 58 ~~~~~~~~~~~~~~~ln~~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~ 137 (517) ..... .+...+.++|+|+.|+...+++|+++|+++++++. ...++.|++++++|+|...+.+++..++ T Consensus 61 ~~~~~--~~~~~ki~~n~~~~Ivd~~~~~l~g~p~~~~~~~d----------~~~~~~l~~~~~~n~~~~~~~~~~~~~~ 128 (470) T protein:vir:99 61 APEKE--TGADNRIVVNSAKYVVDVYNGYFCGIEPKLALLND----------SSKIDEIARWNRQENFFDTINEISKQCD 128 (470) T ss_pred Ccccc--cCCcceeecchHHHHHHHHhhhhccCCeeEeeCCc----------hhHHHHHHHHHHhcCHhHHHHHHHHHHH Confidence 33222 23345678899999999999999999999987542 2345678889999999999999999999 Q ss_pred hhCCEEEEEEEe-CCeeEEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEE Q lcl|Aclame:pro 138 ALGGLTVRPYVD-NGEIEFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNE 216 (517) Q Consensus 138 ~~G~~~~k~~~d-~g~~~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ 216 (517) .+|.+|+.+|+| +|++++.+++|.+++|++.+..+....++++......++...+| ++.++.. ..|+ T Consensus 129 ~~G~~~~~v~~d~dg~~~i~~~~p~~~~~i~d~~~~~~~~~~vr~~~~~~~~~~~~~--~~~~~~~------~~~~---- 196 (470) T protein:vir:99 129 IFGRSIASIYQGEDARPHLMYSSPNHAFIIYDDTVQRQPLAFVHYQIDNSNNWTDAY--GVIQYAD------KFYK---- 196 (470) T ss_pred hcCeeEEEEEeCCCCeEEEEEEccceeEEEEcCCCCcceEEEEEEEEEecCCeeEEE--EEEEecC------eEEE---- Confidence 999999999997 68899999999999999766554333333333332222222223 3333322 1122 Q ss_pred EeecCCccccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 217 LYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEI 296 (517) Q Consensus 217 ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~ 296 (517) |...+ .+...++ .....++++++|+++|+++ +.|+|+|++++++||+||.++|++.+.+ T Consensus 197 -~~~~~---~~~~~~~--------~~~~~~~~g~vPvv~~~n~---------~~g~sd~e~v~~liDa~~~~~s~~~~~~ 255 (470) T protein:vir:99 197 -FKGYD---IEEDTNA--------AGYAINPYGLVPAVEFFEN---------EERQGIFDSIKTLINALDKVISQKANQV 255 (470) T ss_pred -EEecc---ccccccc--------ccccccCCCccceEeecCC---------CCCCcchHhHHHHHHHHHHHHHHHHHHH Confidence 22111 1111111 1123366788889888652 4799999999999999999999999999 Q ss_pred HhccceeecchHH-hccCCCCcccccCccCCcccceeeeecCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCc Q lcl|Aclame:pro 297 KMGQRTVFVSDVM-LRTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSV 375 (517) Q Consensus 297 ~~~~~~i~v~~~~-l~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~ 375 (517) +.....+.+-..+ +..+..+. ....+.....++......+.++.++.++++++.+.+...++.+.+.|...++.+. T Consensus 256 ~~~~~~~~~i~g~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~ 332 (470) T protein:vir:99 256 EYFDNAYMYMIGFKLPEDDEGN---PKFDFKNNRVLYVSQLDPDTNPQIGFIAKPDADQMQENLIQHLTDFIFMMAMVPN 332 (470) T ss_pred HHhcCceeeeecCCcccccccc---hhhhhhhcceeeecCCCCCCCCcceEEeecCChHHHHHHHHHHHHHHHHHhCCcc Confidence 7555555553322 22111111 1111111111122212234556689999999999999999999999888887764 Q ss_pred cccccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHH Q lcl|Aclame:pro 376 GTFSFDGRSMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSAL 455 (517) Q Consensus 376 ~~~~~~~~~~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~ 455 (517) -+++ ..+|..||.+++++.+.+.+++..+++.|+.+|++++++|+.+... .+.......+|+|.|+++++.|..+. T Consensus 333 ~~~~-~~~~n~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~---~~~~~~~~~~i~v~f~~~~p~~~~e~ 408 (470) T protein:vir:99 333 IQDK-NFAGNSSGVALQYKLFAMKNKADSKERKFDKSLMQLYRIVLATLFN---NKQDQELWSELDFKFTRNLPEDMASA 408 (470) T ss_pred cccc-ccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCCcccccccceEEeCCCCCcCHHHH Confidence 3332 2246679999999999999999999999999999999999887543 23333455679999999999999999 Q ss_pred HHHHHHHHhcCCCCHHHHHHhhCCCCHHHHHHHHHHHHHhcccc----CCCCCcc-ccCCCCCCCCC Q lcl|Aclame:pro 456 LRFYGQAKTFGFIPTVEAIQRIFKVPKKTAEQWLEEIRKDQIEL----DPVTISQ-RAQKRMFGDEE 517 (517) Q Consensus 456 ~~~~~~~~~~G~~S~~~~l~~~~~~~eeea~~el~~i~~E~~~~----~~~~~~~-~~~~~~~G~ee 517 (517) ++.+.+++ |+||.++++.++.+ ++ +++|++||++|+.+. .+...+. ..+...+|+|| T Consensus 409 a~~~~kl~--giis~et~l~~l~~-vd--~~~E~eri~~E~~~~~~~~~~~~~~~d~~~~d~~~ee~ 470 (470) T protein:vir:99 409 IDNAKNAE--GIVSKKTQLGMIPD-IE--PDAEMKQIAKEKADAIKQTQQLSMPIDILKRDNNAEEE 470 (470) T ss_pred HHHHHHHh--ccCCHHHHHHhCCC-CC--HHHHHHHHHHHHHHHHHHHHhhcCCCCcCCCCCCccCC Confidence 99888875 89999999887644 43 567899998886532 1111111 12233345555 No 33 >protein:vir:105292 Length: 478 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1679 # MgeName: PH15 # Cross-refs: genbank:acc:YP_950666;genbank:gi:119967836;genbank:GeneID:4643171 Probab=100.00 E-value=7.6e-52 Score=300.85 Aligned_cols=447 Identities=13% Similarity=0.108 Sum_probs=291.9 Q ss_pred CchH------HHHHHHHHHHHHHhhc--ccchh-hhccccCcCCHHHHHHHHHHHHHhcCCCcccccccc-c-----Ccc Q lcl|Aclame:pro 1 MKVI------QRIKNFFKRGGYALSG--QTLKS-INDHEKINIDPNELARIERNLRQYEGDYPQVEYINS-Q-----GKI 65 (517) Q Consensus 1 m~~~------~~ik~~~~~~~~~~~~--~~~~~-~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~-~-----~~~ 65 (517) |-=| ..++.++...-..... +.|.. +..|. ....++.++++||.|+++-++.... . ... T Consensus 1 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~i~~~i~~~~------~~~~~~~~~~~yY~g~~~i~~~~~~~~~~~~~~~~ 74 (478) T protein:vir:10 1 MISINWPWDKPYHEQVVEQIKPKYETQEEMILRLVREHK------ENIDNITMGERYYNHHPDILDAPPKRDVNGDYDET 74 (478) T ss_pred CccccCCCCchhHHHHHHHHhhccCCcHHHHHHHHHHHH------HHHHHHHHHHHHhcCCCchhccccccccccccccc Confidence 3222 2344455443332221 11222 22221 2345778889999999865432211 1 112 Q ss_pred ccccccccChHHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEE Q lcl|Aclame:pro 66 QERDYMTLNLRKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVR 145 (517) Q Consensus 66 ~~~~~~~ln~~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k 145 (517) +...+.++|+|+.|+...|++||++++++++++. ..++.|+.+++ |+|...+.++++.|+.+|.+|++ T Consensus 75 ~~~~ki~~n~~~~ivd~~~~~l~g~~~~~~~~~d-----------~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~ 142 (478) T protein:vir:10 75 KPDWRMYTNYHQNLVDQKVAYAVANPVTFGVDND-----------KALKQIQHTLN-HKWDDKLVDILTAASNKGIEWVQ 142 (478) T ss_pred cccceeccchHHHHHHHHHhhhccCCeeeecCCh-----------HHHHHHHHHHh-cCHHHHHHHHHHHHHhcCeEEEE Confidence 2334678999999999999999999999987653 35677888886 68999999999999999999999 Q ss_pred EEEe-CCeeEEEEEcCCeEEEEEEcCC-ceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCc Q lcl|Aclame:pro 146 PYVD-NGEIEFSWALANAFYPLRSNSN-GISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNE 223 (517) Q Consensus 146 ~~~d-~g~~~i~~v~a~~~~P~~~~~~-~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~ 223 (517) +|+| +|.+++.+++|.+++|++.+.. +...+++.++. .. +.. +.+.|+..++. + |...+. T Consensus 143 ~~~d~~g~~~~~~~~p~~~~~i~d~~~~~~~~~~v~~~~--~~--~~~---~~~~y~~~~i~---------~--~~~~~~ 204 (478) T protein:vir:10 143 PYVDEEGEFKTFRVPAEQAVPIWTNKERDELQAFIRVYE--LD--GAE---RVEYWTKDDVT---------Y--YELKEG 204 (478) T ss_pred EEecCCCeeEEEEEcccceEEEEcCCCCCceEEEEEEEE--ec--Cce---EEEEEeCCeEE---------E--EEEcCC Confidence 9998 6899999999999999976543 33333333222 11 121 23555543221 1 111110 Q ss_pred ccc---Cc-ccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 224 GEI---GK-RIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMG 299 (517) Q Consensus 224 ~~l---G~-~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~ 299 (517) ..+ .. ......++ ......++++++|+++|++ +|.|+|+|+++++|||++|.++|++++.++.. T Consensus 205 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~vPvv~~~n---------~~~g~sd~~~v~~liDa~~~~~S~~~~~~~~~ 272 (478) T protein:vir:10 205 QLIPDFYRSDDHIQPHY---YQGNKLMSWGRVPFIPFKN---------NPQEVSDLFMYKTIIDALDKRLSDTQNTFDES 272 (478) T ss_pred eeeccccccccccccce---ecccccccCCccceEEecc---------CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHh Confidence 000 00 00000010 0112336778888888864 36899999999999999999999999999865 Q ss_pred cceeecchHHhccCCCCcccccCccCCcccceeeeecC-CCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCcccc Q lcl|Aclame:pro 300 QRTVFVSDVMLRTVPDESGMPPPQVFDPDVNVYKSIRM-GTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTF 378 (517) Q Consensus 300 ~~~i~v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~~-~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~ 378 (517) ...+++...+- .. ....+..+...+..+.. +++++.++.++++++++++...++.+.+.|...++...-++ T Consensus 273 ~~p~~~~~g~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~ 344 (478) T protein:vir:10 273 VELIYILKGYE---GE-----DMKDFMHNLKYYKAISVAGESGSGVDTIKVEVPIDSVKEYTKMLRDYIIEFGQGVDFQQ 344 (478) T ss_pred hCceeeeecCC---cc-----ccchhhhhhhhcceEEecCCCCCcceEEeecCChHHHHHHHHHHHHHHHHHhCccccCc Confidence 55566633331 11 01112223333333333 23456788999999999999999998888877776543222 Q ss_pred ccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHH Q lcl|Aclame:pro 379 SFDGRSMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRF 458 (517) Q Consensus 379 ~~~~~~~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~ 458 (517) + ..+|..||.+++++.+.+.++++.+++.|+.+|++++++|+.+.. ...+..+|.|+|+++++.|..+.+++ T Consensus 345 ~-~~~~n~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~g-------~~~~~~~i~i~f~~~~p~d~~e~a~~ 416 (478) T protein:vir:10 345 D-KFGNSPSGIALKFMYSNLDLKANKLKNKTLTALQELLQYIIDFYR-------LDVKVQDIEITFNFNVMVNELENSQI 416 (478) T ss_pred c-ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCcccccceEEecCCCCCCHHHHHHH Confidence 1 123677899999999999999999999999999999999887531 22345679999999999999999998 Q ss_pred HHHHHhcCCCCHHHHHHhhCCCCHHHHHHHHHHHHHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 459 YGQAKTFGFIPTVEAIQRIFKVPKKTAEQWLEEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 459 ~~~~~~~G~~S~~~~l~~~~~~~eeea~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) ++++ +|+||.+|++.++ |++++ +++|++||++|+.+..+...+. ..+..|++| T Consensus 417 ~~kl--~g~iS~et~~~~l-~~v~D-~~~E~~ri~~E~~~~~~~~~~~--~~~~~~~~~ 469 (478) T protein:vir:10 417 AMNS--TGLLSKETILSNH-AWVED-PVAEMERIEQENIELNQQLPDI--EEGLNGEQQ 469 (478) T ss_pred HHHH--hCCCChHHHHHhC-CCCCC-HHHHHHHHHHHHHHHHhhcccc--ccccCCCCC Confidence 8776 6999999988766 55444 6789999998876533321111 111112222 No 34 >protein:vir:107112 Length: 478 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1571 # MgeName: CNPH82 # Cross-refs: genbank:acc:YP_950601;genbank:gi:119953681;genbank:GeneID:4643121 Probab=100.00 E-value=1.7e-51 Score=298.88 Aligned_cols=451 Identities=12% Similarity=0.091 Sum_probs=295.2 Q ss_pred Cch-----HHHHHHHHHHHHHHhhc--ccchhhh-ccccCcCCHHHHHHHHHHHHHhcCCCcccccccc-c-----Cccc Q lcl|Aclame:pro 1 MKV-----IQRIKNFFKRGGYALSG--QTLKSIN-DHEKINIDPNELARIERNLRQYEGDYPQVEYINS-Q-----GKIQ 66 (517) Q Consensus 1 m~~-----~~~ik~~~~~~~~~~~~--~~~~~~~-~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~-~-----~~~~ 66 (517) |.+ ...++.+++.+...-.+ +.|+... .| .....++.++++||.|+++.++.... . ...+ T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~------~~~~~r~~~~~~Yy~g~~~i~~~~~~~~~~~~~~~~~ 75 (478) T protein:vir:10 2 ISINWPWDKPYHEQVVEQIKPKYETQEEMILRLVREH------KENIDNITMGERYYNHHPDILDAPFKRDVNGDYDETK 75 (478) T ss_pred ccccccCCchhhhHHHHHhhhccCChHHHHHHHHHHH------HHHHHHHHHHHHHhcccccccccchhhhccccccccc Confidence 222 12233344433322111 1122221 11 12346788889999999865443211 1 1222 Q ss_pred cccccccChHHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEE Q lcl|Aclame:pro 67 ERDYMTLNLRKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRP 146 (517) Q Consensus 67 ~~~~~~ln~~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~ 146 (517) ...+.++|+++.|+...+++||++++++++++. .+++.|+.+++ |+|...+.+++..|+++|.+|+++ T Consensus 76 ~~~ki~~n~~k~ivd~~~~yl~g~p~~~~~~~~-----------~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~v 143 (478) T protein:vir:10 76 PDWRMYTNYHQNLVDQKVAYAVANPVTFGVDND-----------KALKQIQHTLN-HKWDDKLVDILTAASNKGIEWVQP 143 (478) T ss_pred ccceeccchHHHHHHHHhhhhcccCceeecCCh-----------HHHHHHHHHHh-ccHHHHHHHHHHHHhhCCeEEEEE Confidence 334678999999999999999999999987653 35677888875 789999999999999999999999 Q ss_pred EEe-CCeeEEEEEcCCeEEEEEEcC-CceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCcc Q lcl|Aclame:pro 147 YVD-NGEIEFSWALANAFYPLRSNS-NGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEG 224 (517) Q Consensus 147 ~~d-~g~~~i~~v~a~~~~P~~~~~-~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~ 224 (517) |+| +|++++.+++|.+++|++.+. .+...+++.++. ..+ . ..+|+|+.+++. + |...+. T Consensus 144 ~~d~~~~~~~~~~~p~~~~~v~d~~~~~~~~~~ir~~~--~~~--~---~~~~~y~~~~i~---------~--~~~~~~- 204 (478) T protein:vir:10 144 YVDEEGEFKTFRVPAEQAVPIWTNKERDELQAFIRVYE--LDG--A---ERVEYWTKDDVT---------F--YELKEG- 204 (478) T ss_pred EecCCCceEEEEEcccceEEEEcCCCCCceEEEEEEEe--eeC--c---eEEEEEeCCcEE---------E--EEecCC- Confidence 998 589999999999999997654 234444333322 111 1 234566554321 1 111110 Q ss_pred ccCccccccc--ccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccce Q lcl|Aclame:pro 225 EIGKRIPLEE--LYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRT 302 (517) Q Consensus 225 ~lG~~v~l~~--~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~ 302 (517) .+........ ...........++++++||++|+|+ +.|+|+|++++++||+||.++|++++.++..... T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~---------~~g~sd~e~v~~liDa~~~~~S~~~~~~~~~~~~ 275 (478) T protein:vir:10 205 QLIPDFYRSEDHIQPHYYQGNKLMSWGRVPFIPFKNN---------PQEVSDLFMYKTIIDALDKRLSDTQNTFDESVEL 275 (478) T ss_pred eeeccccccccccccceecccccccCCcceEEEeccC---------CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhCc Confidence 0111100000 0000001123467888899988752 5699999999999999999999999999766666 Q ss_pred eecchHHhccCCCCcccccCccCCcccceeeeecCC-CCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccC Q lcl|Aclame:pro 303 VFVSDVMLRTVPDESGMPPPQVFDPDVNVYKSIRMG-TDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFD 381 (517) Q Consensus 303 i~v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~~~-~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~ 381 (517) +++...+ .++. ...+..+...++.+..+ ++++.++.++++++.+++...++.+.+.|...++...-++ .. T Consensus 276 ~~~~~g~---~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~-~~ 346 (478) T protein:vir:10 276 IYILKGY---EGED-----MKDFMHNLKYYKAISVAGESGSGVDTIKVEVPIDSVKEYTKMLRDYIIEFGQGVDFQQ-DK 346 (478) T ss_pred ceeeecC---Cccc-----ccchhhhhhhCceeEecCCCCCcceEEeecCCHHHHHHHHHHHHHHHHHHhCCcCcCc-cc Confidence 6663322 1111 11133333334444332 3556799999999999999999999888888776542221 11 Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHH Q lcl|Aclame:pro 382 GRSMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQ 461 (517) Q Consensus 382 ~~~~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~ 461 (517) .+|..||.+++++.+.+.++++.+++.|+.+|+++++.|+.+.. ...+..+|.|+|+++++.|..+.++.+++ T Consensus 347 ~~~n~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~-------~~~d~~~i~i~f~~~~p~~~~e~~~~~~~ 419 (478) T protein:vir:10 347 FGNSPSGIALKFMYSNLDLKANKLKNKTLTALQELLQYIIDFYR-------LDVRVQDIEITFNFNVMVNELENSQIAMN 419 (478) T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCcccccceEEeCCCCCCCHHHHHHHHHH Confidence 23567899999999999999999999999999999999987642 22345679999999999999999888776 Q ss_pred HHhcCCCCHHHHHHhhCCCCHHHHHHHHHHHHHhccccCCCC-------CccccCCCCCCCCC Q lcl|Aclame:pro 462 AKTFGFIPTVEAIQRIFKVPKKTAEQWLEEIRKDQIELDPVT-------ISQRAQKRMFGDEE 517 (517) Q Consensus 462 ~~~~G~~S~~~~l~~~~~~~eeea~~el~~i~~E~~~~~~~~-------~~~~~~~~~~G~ee 517 (517) + +|++|.+|++.+++++ ++ +++|++||++|+.+..+.. .+.....+.+|+.| T Consensus 420 ~--~g~iS~et~i~~~~~v-~d-~~~E~~ri~~E~~~~~~~~~~~~~~~~d~~~~~~~d~~~e 478 (478) T protein:vir:10 420 S--TGLLSKETILGNHSWV-QD-PVAEMERIEQENIELNQQLPDIEEGLNDEQQRQSEDNQSE 478 (478) T ss_pred H--hCCCChHHHHHhCCCC-CC-HHHHHHHHHHHHHHHHHhccccCCCCcccccccCcCCCCC Confidence 5 6999999999766444 44 7789999998886533211 11111233344444 No 35 >protein:vir:95806 Length: 440 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1578 # MgeName: SMP # Cross-refs: genbank:acc:YP_950583;genbank:gi:119953778;genbank:GeneID:5076876 Probab=100.00 E-value=1.1e-51 Score=299.99 Aligned_cols=432 Identities=9% Similarity=-0.015 Sum_probs=299.7 Q ss_pred hhhccccCcCCHHHHHHHHHHHHHhcCCCccccccc-ccCccccccccccChHHHHHHHHhhhhcCCcceeEecCccccc Q lcl|Aclame:pro 25 SINDHEKINIDPNELARIERNLRQYEGDYPQVEYIN-SQGKIQERDYMTLNLRKLSADVLSGLVFNEQCEVYVSDAKDEE 103 (517) Q Consensus 25 ~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~-~~~~~~~~~~~~ln~~~~i~~~~A~ll~~e~~~i~~~~~~~~~ 103 (517) -+.+|. .+...|+.+..+||.|+++.+.... .....+...+.++|+|+.|+...+++|+++|+++++++... T Consensus 1 ~~~~~~-----~~~~~r~~~l~~yy~g~~~~~~~~~~~~~~~~~~~ki~~n~~~~ivd~~~~~l~g~~~~~~~~~~~~-- 73 (440) T protein:vir:95 1 MLAAFL-----GSQKQRLAILASYAQGDNFSILSGHRRLDDEKADYRVRHKWGGYISSFATGYVIGNPVSIGVMEGGS-- 73 (440) T ss_pred ChhhHH-----HHHHHHHHHHHHHhccCCcccccccccccccCCcceeecchHHHHHHhhhhheeccCceEeeCCCcc-- Confidence 122222 2345688888999999988654332 22333445568899999999999999999999998866432 Q ss_pred ccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe-CCeeEEEEEcCCeEEEEEEcCC-ceEEEEEEEE Q lcl|Aclame:pro 104 KKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD-NGEIEFSWALANAFYPLRSNSN-GISEGVMKSV 181 (517) Q Consensus 104 ~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d-~g~~~i~~v~a~~~~P~~~~~~-~~~~~a~~~~ 181 (517) +...+.|+.++++|+|...+.+++..|+++|.+|+++|+| +|++++.+++|.+++|++.+.. +...+++.++ T Consensus 74 ------~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~~~~d~~~~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~ 147 (440) T protein:vir:95 74 ------ADQLSTIKDIEWQNDINALNSDLAFDASVYGRAYEYHFRDKDKVDRVVLISPLEMFVIRDLTVEQNIIAAVHLP 147 (440) T ss_pred ------HHHHHHHHHHHHhcCHhHHHHHHHHHHhhcCeEEEEEEecCCCceEEEEEcccceEEEEcCCCCCceEEEEEEE Confidence 3456789999999999999999999999999999999997 5789999999999999865544 3333333222 Q ss_pred EEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccccCCCCcceEEcCCCcceEEEecCCcc Q lcl|Aclame:pro 182 TTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGF 261 (517) Q Consensus 182 ~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~ 261 (517) . .++ .. | .+.|+..+ .+.+..+..+.. +. ...+..-+++++.|+++|+|+ T Consensus 148 -~--~~~-~~-~--~~vyt~~~--------~~~~~~~~~~~~---~~----------~~~~~~~~~~g~vPvv~~~n~-- 197 (440) T protein:vir:95 148 -I--YAD-KV-N--MTVYTKDK--------VITYKPYSNNSV---RL----------VVDDVKKHSYNDVPVVEWWNN-- 197 (440) T ss_pred -E--ecC-ce-E--EEEEeCCe--------EEEEEEecCCcc---ce----------eecceeeccCceeeEEEeeCC-- Confidence 1 111 11 1 34444321 122222211110 00 011223467888899998752 Q ss_pred ccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeecchHHhccCCCCcccccCccCCcccceeeeec----C Q lcl|Aclame:pro 262 NNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRTVFVSDVMLRTVPDESGMPPPQVFDPDVNVYKSIR----M 337 (517) Q Consensus 262 N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~----~ 337 (517) ..|+|+|+.+++|||+||.++|++++.++.....+.|...+....... +.. ...+.....++.... . T Consensus 198 -------~~g~sd~e~v~~lida~~~~~s~~~~~~~~~~~~~~v~~g~~~~~~~~-~e~-~~~~~~~~~~~~~~~~~~~~ 268 (440) T protein:vir:95 198 -------RFRMGDYESEISLIDAYDAGQSDTANYMSDLNDAMLLVKGDLDGIKLS-PED-AAKMKDANMLFLKTGISTTG 268 (440) T ss_pred -------CCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhcceeeeecccccCCCC-ccc-hhhhhhccceeccccccccc Confidence 358999999999999999999999999987666666633321111111 111 111222222333222 1 Q ss_pred CCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 338 GTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLV 417 (517) Q Consensus 338 ~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li 417 (517) .+.++.++.++++++.+++...++.+.+.|...++.+.-+++. .++..||.+++++.+.+.++++++++.|+.+|.+++ T Consensus 269 ~~~~~~~~~lt~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~-~~~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~ 347 (440) T protein:vir:95 269 QQTTADASYIYKQYDVNGTEAYKNRLANDIHRFSRIPNLDDDR-FNSTSSGIALLYKMIGLEQVRKDKETYFTKALRRRY 347 (440) T ss_pred CCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCccccccc-ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 2344568999999999999999999999998888876544332 235678999999999999999999999999999999 Q ss_pred HHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCCHHHHHHhhCCCCHHHHHHHHHHHHHhcc Q lcl|Aclame:pro 418 ISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTVEAIQRIFKVPKKTAEQWLEEIRKDQI 497 (517) Q Consensus 418 ~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~~~l~~~~~~~eeea~~el~~i~~E~~ 497 (517) +.|+.++.. ..+.......++|.|+++++.|..+.++.+.++ +|+||.++++.+++++++ ++|++||++|+. T Consensus 348 ~li~~~~~~---~~~~~~~~~~v~i~f~~~~p~~~~~~ad~~~kl--~g~iS~et~~~~l~~~d~---~~E~~ri~~E~~ 419 (440) T protein:vir:95 348 ELISNIHKA---INGPVIEANKLTFTFHPNIPQDVWTEIKAYIEA--GGEISQETLMENASFTDY---KTEHSRILKQGG 419 (440) T ss_pred HHHHHHHhh---cCCcccccccceEEeCCCCCCCHHHHHHHHHHH--hccCcHHHHHHhCCCCCc---HHHHHHHHHHHH Confidence 999887654 333444566799999999999999999998887 589999999987755533 357899999887 Q ss_pred ccCCCCCccccC-CCCCCCCC Q lcl|Aclame:pro 498 ELDPVTISQRAQ-KRMFGDEE 517 (517) Q Consensus 498 ~~~~~~~~~~~~-~~~~G~ee 517 (517) +..+...+..+. .+..+++| T Consensus 420 ~~~~~~~~~~~~~~~~~~~~e 440 (440) T protein:vir:95 420 SSDLEIGQIVGDADVGQADTE 440 (440) T ss_pred HhhhhHHhhccCCCCCCcCCC Confidence 665544443333 33334444 No 36 >protein:vir:3609 Length: 452 # NCBI annotation: ORF32 # Family: family:all:125 # MgeID: mge:74 # MgeName: TP901-1 # Cross-refs: genbank:acc:NP_112695;genbank:gi:13786563;genbank:GeneID:921063 Probab=100.00 E-value=8.6e-51 Score=295.06 Aligned_cols=424 Identities=11% Similarity=0.032 Sum_probs=289.4 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccChHHHHH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLRKLSA 80 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~~~i~ 80 (517) |. .+.|.+++.+. .....|+.+..+||.|+++.+..... ...+...+.++|+|+.|+ T Consensus 17 ~~-~~~i~~~i~~~---------------------~~~~~r~~~~~~Yy~g~~~i~~~~~~-~~~~~~~ki~~n~~~~iv 73 (452) T protein:vir:36 17 IT-VEVVTKFMEKH---------------------KLEVARYEYLKNMYLGIMAIDDEPAK-DSWKPDNRLAVNFTKYIV 73 (452) T ss_pred CC-HHHHHHHHHHH---------------------HHHHHHHHHHHHHhccccccccCccc-cccCccceeecchHHHHH Confidence 21 12223332210 01234566778999999876554332 333344567889999999 Q ss_pred HHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe-CCeeEEEEEc Q lcl|Aclame:pro 81 DVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD-NGEIEFSWAL 159 (517) Q Consensus 81 ~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d-~g~~~i~~v~ 159 (517) ...|++||++++++++++. ..++.|++++++|+|...+.+++..++.+|.+|+++|+| +|++++.+++ T Consensus 74 d~~~~~l~g~~~~~~~~d~-----------~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~~~ 142 (452) T protein:vir:36 74 DTFTGYFNGIPVKKSHSDK-----------EILTKLQEFDNLNDMEDEESELAKMACIYGRAFEFLYQDEDTQTNVVYNS 142 (452) T ss_pred HHHhhhhcccCceeecCCh-----------hHHHHHHHHHhhcChhHHHHHHHHHHHhcCeEEEEEEecCCCeeEEEEEc Confidence 9999999999999987653 356789999999999999999999999999999999998 6899999999 Q ss_pred CCeEEEEEEcCC-ceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccccCC Q lcl|Aclame:pro 160 ANAFYPLRSNSN-GISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEG 238 (517) Q Consensus 160 a~~~~P~~~~~~-~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~ 238 (517) |.+++|++.+.. +...+++.+ +. ..++ . .++|.|+... .|+ |...+. |.. + T Consensus 143 p~~~~~v~d~~~~~~~~~~i~~-~~--~~~~-~--~~~~vyt~~~------i~~-----~~~~~~---~~~--~------ 194 (452) T protein:vir:36 143 PENMFMVYDDTVKQEPLFAVRY-GV--DEDK-K--LQGEVYTLLE------TIK-----ISGEND---EIS--F------ 194 (452) T ss_pred ccceEEEEcCCCCCceEEEEEE-EE--ecCc-e--EEEEEEecCe------EEE-----EEEcCC---ceE--E------ Confidence 999999876543 333333322 22 1222 2 2346665432 122 111111 000 0 Q ss_pred CCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeecchHHhccCCCCcc Q lcl|Aclame:pro 239 MQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRTVFVSDVMLRTVPDESG 318 (517) Q Consensus 239 l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~l~~~~~~~~ 318 (517) ....-++++++|+++|+++ +.|+|+|++++++||+||.++|++++.++.....+.+...+ ... + T Consensus 195 --~~~~~~~~g~iPvv~~~n~---------~~g~sd~e~v~~liDa~d~~~s~~~~~~~~~~~p~~~~~g~---~~~--~ 258 (452) T protein:vir:36 195 --GEGTYNPYPDLPVVEFYFN---------EERMSIFESVISLVNAFNKAISEKANDVDYFSDQYLTFLGA---AVE--E 258 (452) T ss_pred --ecceeccCCcccEEEecCC---------CCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCceeEeecC---CcC--c Confidence 0112356778888888652 46999999999999999999999999996555444442111 000 0 Q ss_pred cccCccCCcccceeeeec----CCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHHHHH Q lcl|Aclame:pro 319 MPPPQVFDPDVNVYKSIR----MGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVSE 394 (517) Q Consensus 319 ~~~~~~fd~~~~~y~~~~----~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a~ 394 (517) .+..+...+..+. +...++.+++++++++.+++...++.+.+.|...++... ++++..|..||++++++ T Consensus 259 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~--~~~~~~gn~Sg~Al~~~ 331 (452) T protein:vir:36 259 -----EDLKNIRSNRVINYYADGEGKNVDVKFLEKPDSDSQTENLLDRLTKLIFQTTMVAN--ISDESFGSSSGVSLAYK 331 (452) T ss_pred -----hhhhhhhhcceEEecCCCCccCCcceeEeecCCHHHHHHHHHHHHHHHHHHhCccc--cCcccccCCcHHHHHHH Confidence 0111211222222 223445688999999999999999999998888776642 45556677899999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCCHHHHH Q lcl|Aclame:pro 395 NDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTVEAI 474 (517) Q Consensus 395 ~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~~~l 474 (517) .+.+.++++.+++.|+.+|++++++|+.++... +......+|+|.|+++++.|..+.++.++++ +|+||.+|++ T Consensus 332 ~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~----~~~~~~~~i~i~f~~~~p~d~~~~a~~~~k~--~g~iS~et~~ 405 (452) T protein:vir:36 332 LQAMSNLALSFQRKFQSSLNSRYKLFCELSTNV----SNKDSWKDIEYTFTRNEPKDIKEQAETANIL--MGITSQETAL 405 (452) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----CCccccccceEEeCCCCCcCHHHHHHHHHHH--hccCChHHHH Confidence 999999999999999999999999999887642 2233445789999999999999999988876 5999999998 Q ss_pred HhhCCCCHHHHHHHHHHHHHhccccCC-----CCCccccCCC-CCCCCC Q lcl|Aclame:pro 475 QRIFKVPKKTAEQWLEEIRKDQIELDP-----VTISQRAQKR-MFGDEE 517 (517) Q Consensus 475 ~~~~~~~eeea~~el~~i~~E~~~~~~-----~~~~~~~~~~-~~G~ee 517 (517) ..+ |++++ +++|++||++|+.+... .......+.. ...++| T Consensus 406 ~~~-~~~~d-~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e 452 (452) T protein:vir:36 406 SVI-SVIPD-VQAEMEKIKKEEASTAIFDKDKQPSEKGTDTVVSETNEE 452 (452) T ss_pred HhC-CCCCC-HHHHHHHHHHHHHHHHHHHhhccCCCCcccccCccccCC Confidence 755 55544 77899999988765321 1111111111 112222 No 37 >protein:vir:102950 Length: 471 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1461 # MgeName: EJ-1 # Cross-refs: genbank:acc:NP_945279;genbank:gi:39653714;interpro:IPR006428;uniprot:Q708N3;genbank:GeneID:2672864 Probab=100.00 E-value=4.8e-51 Score=296.43 Aligned_cols=440 Identities=12% Similarity=0.094 Sum_probs=297.5 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccc--------------cCccc Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINS--------------QGKIQ 66 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~--------------~~~~~ 66 (517) |-+ +.|++.|.+... .| .+...++.+.++||.|+++.+..... ..... T Consensus 1 ~~~-e~~~~~i~~~~~-----------~~------~~~~~~~~~~~~Yy~g~hdi~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (471) T protein:vir:10 1 MEI-EVIKKIISSQMV-----------KH------GKFVSQAAEAEKYYRNENDIKRKRKPADKKGAENEAKAEDNAFRN 62 (471) T ss_pred CCH-HHHHHHHHHHHH-----------HH------HHHHHHHHHHHHHhccccccccccchhhhhccccccccccccccc Confidence 321 223333322111 11 12356788899999999765432110 11122 Q ss_pred cccccccChHHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEE Q lcl|Aclame:pro 67 ERDYMTLNLRKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRP 146 (517) Q Consensus 67 ~~~~~~ln~~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~ 146 (517) ...+.++|+++.|+...++++|++|+++++++. ..++.|+.+++ |+|...+.+++..++..|.+|+.+ T Consensus 63 ~~~ki~~n~~~~Ivd~~~~yl~G~p~~~~~~~~-----------~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~v 130 (471) T protein:vir:10 63 ADNRISHNWHQLLLDQKKAYALTYPPTFDVDDK-----------KVNDMIVDVLG-DDYERISKQLCVNAGNAGIAWLHV 130 (471) T ss_pred ccceeccchhHHHHHhhhhhhcccCceeccCCh-----------HHHHHHHHHHh-cCHHHHHHHHHHHHhhCCeEEEEE Confidence 334678999999999999999999999987653 35677888876 689999999999999999999999 Q ss_pred EEe--CCeeEEEEEcCCeEEEEEEcCC-ceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCc Q lcl|Aclame:pro 147 YVD--NGEIEFSWALANAFYPLRSNSN-GISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNE 223 (517) Q Consensus 147 ~~d--~g~~~i~~v~a~~~~P~~~~~~-~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~ 223 (517) |+| +|++++.+++|.+++|++.+.. +...+++.++... ...+.+..+++|+++..+. |+ |...+. T Consensus 131 ~~d~~~g~~~~~~~~p~~~~~i~d~~~~~~~~~~ir~~~~~-~~~~~~~~~~~~vy~~~~~------~~-----y~~~~~ 198 (471) T protein:vir:10 131 WKDASDNSFRYACVDSKEVIPIYSKSLDKKSIGVLRVYSSI-DETDGKNYTVYEYWNDKEC------SF-----YRHEKE 198 (471) T ss_pred EeeCCCCeeEEEEEcccceEEEEcCCCCCceEEEEEEEEee-ccCCCceeEEEEEEeCCcE------EE-----EEecCC Confidence 998 4899999999999999976553 3344444333332 2222333455677654321 11 221111 Q ss_pred cccCcccccc------cc--cCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 224 GEIGKRIPLE------EL--YEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWE 295 (517) Q Consensus 224 ~~lG~~v~l~------~~--~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e 295 (517) .....+... .. ..........+++++.||++|+|+ ..|.|+|+.+++|||+||.++|++++. T Consensus 199 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n~---------~~~~sd~e~v~~liDa~d~~~S~~~~~ 268 (471) T protein:vir:10 199 -KPLEELETFQAISLIDTMNGDRSSDNSFKHDFGLVPFIPFKNN---------EIETNDLKPIKDLVDVYDKVFSGFVND 268 (471) T ss_pred -cccccccccccccccccccccccccccccCCCCceeEEEeccC---------CCCCCchHHHHHHHHHHHHHHHHHHHH Confidence 111111111 10 111223345578899999999763 348999999999999999999999999 Q ss_pred HHhccceeecchHHhccCCCCcccccCccCCcccceeeeecC----CCCCCcceEEecccChHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 296 IKMGQRTVFVSDVMLRTVPDESGMPPPQVFDPDVNVYKSIRM----GTDEEFVKDVTHDIRTEQYKEAINQALRTLEMEL 371 (517) Q Consensus 296 ~~~~~~~i~v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~~----~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~ 371 (517) ++.....++|...+ .... ...+..+...+..+.. ...++++++++++++.+++...++.+.+.|...+ T Consensus 269 ~~~~~~~~lv~~g~----~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s 340 (471) T protein:vir:10 269 TDDVQEVIFVLTNY----GGQD----KQEFLEDLKRYKMIKMDNDGMGDQSGVTTIAIDIPTEARNLILERTKKQIFISG 340 (471) T ss_pred HHHhhCceeeeecC----Cccc----cchhHHHhhcCCeEEecCCCCccCccceEEeecCChHHHHHHHHHHHHHHHHHh Confidence 97666656663322 1000 0112222223333332 2345679999999999999999999999988877 Q ss_pred CCCccccccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCC Q lcl|Aclame:pro 372 KLSVGTFSFDGRSMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQD 451 (517) Q Consensus 372 g~s~~~~~~~~~~~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d 451 (517) +...- +++..|..|+.+++++.+.+.++++.+++.|+.+|+++++.|+.+.... +...|.|+|++.+|.| T Consensus 341 ~tp~~--~~~~~gn~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~--------d~~~i~i~f~~~~p~n 410 (471) T protein:vir:10 341 QGVNP--ETDKLGNSSGVALKFLYSLLELKAGNMETQFRSGYATLVKMILKHLGLS--------DKLKIKQTWTRNSINN 410 (471) T ss_pred CCcCC--CcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--------CCceeEEEeCCCCCCC Confidence 65432 3344567789999999999999999999999999999999998875422 3356899999999999 Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHhhCCCCHHHHHHHHHHHHHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 452 RSALLRFYGQAKTFGFIPTVEAIQRIFKVPKKTAEQWLEEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 452 ~~~~~~~~~~~~~~G~~S~~~~l~~~~~~~eeea~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) ..+.++.++++ +|+||.+|++.++.++++ +++|++||++|+.+..... ....+..+++| T Consensus 411 ~~e~~~~~~kl--~g~iS~et~~~~~p~v~D--~~~E~eri~~E~~~~~~~~---~~~~~~~~~~e 469 (471) T protein:vir:10 411 DTEMAQVVSTL--ATITSRENVAKSNPIVED--WQDELRLQKAEQEGRSEKL---YDMEEVEHESE 469 (471) T ss_pred HHHHHHHHHHH--hccCchHHHHHhCCCCCC--HHHHHHHHHHHHHHHHhcc---cccCCCCCccc Confidence 99999988886 599999999987755554 6789999998875432111 11223333444 No 38 >protein:vir:3964 Length: 453 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:83 # MgeName: ul36 # Cross-refs: genbank:acc:NP_663672;genbank:gi:21716109;genbank:GeneID:951201 Probab=100.00 E-value=3.1e-50 Score=291.99 Aligned_cols=426 Identities=12% Similarity=0.059 Sum_probs=291.6 Q ss_pred Cch---------------HHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCcc Q lcl|Aclame:pro 1 MKV---------------IQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKI 65 (517) Q Consensus 1 m~~---------------~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~ 65 (517) |+. .+.|++++++ | .....|+.++++||.|+++.+... ..... T Consensus 1 ~~~~~~~~~~~p~d~~~~~~~l~~~i~~---------------~------~~~~~r~~~~~~yy~g~~~i~~~~-~~~~~ 58 (453) T protein:vir:39 1 MKYKPPKLMTFPKDEPITNEVVTKFMEK---------------H------RLEVARYEYLKNMYRGIMAIDAEP-TKDLW 58 (453) T ss_pred CeecCCcceEcCCCCCCCHHHHHHHHHH---------------H------HHHHHHHHHHHHHhhccCchhcCC-Ccccc Confidence 111 1112222221 1 112357788889999998765433 22333 Q ss_pred ccccccccChHHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEE Q lcl|Aclame:pro 66 QERDYMTLNLRKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVR 145 (517) Q Consensus 66 ~~~~~~~ln~~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k 145 (517) +...+.++|+|+.|+..++++||+.+++++.++. ..++.|++++++|+|...+.+++..++++|.+|++ T Consensus 59 ~~~~ki~~n~~~~ivd~~~~~l~g~~~~~~~~d~-----------~~~~~l~~i~~~N~~~~~~~~~~~~~~~~G~~~~~ 127 (453) T protein:vir:39 59 KPDNRLTVNFTKYIVDTFTGYFNGIPVKKSHSDK-----------ETLSKLQEFDNLNDMEDEESELAKMACIYGRAFEL 127 (453) T ss_pred CccceeecchHHHHHHHHhhhhcccCceeccCCh-----------HHHHHHHHHHHhcChhHHHHHHHHHHhhcCeEEEE Confidence 3445678899999999999999999999987653 35678999999999999999999999999999999 Q ss_pred EEEe-CCeeEEEEEcCCeEEEEEEcCCc-eEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCc Q lcl|Aclame:pro 146 PYVD-NGEIEFSWALANAFYPLRSNSNG-ISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNE 223 (517) Q Consensus 146 ~~~d-~g~~~i~~v~a~~~~P~~~~~~~-~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~ 223 (517) +|+| +|.+++.+++|.+++|++.+..+ ...+++.+ .. . .+. .+++|+|+.+.+ |+ |..++. T Consensus 128 v~~d~~g~~~i~~~~p~~~~~v~d~~~~~~~~~~ir~--~~-~-~~~--~~~~~~yt~~~i------~~-----~~~~~~ 190 (453) T protein:vir:39 128 LYQNEETQTNVIYNTPENMFMVYDDTIKQEPLFAVRY--GY-D-DDY--KLYGEVYTKETT------YA-----LNGTMG 190 (453) T ss_pred EEecCCCceEEEEEcccceEEEecCCCCCeEEEEEEE--EE-e-CCe--EEEEEEEeCCeE------EE-----EEecCC Confidence 9998 58899999999999998755443 33333322 11 1 222 245677765431 11 221111 Q ss_pred cccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHH-hccce Q lcl|Aclame:pro 224 GEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIK-MGQRT 302 (517) Q Consensus 224 ~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~-~~~~~ 302 (517) . ..+ .+..-++++++|+++|++ .+.|+|+|+.++++||+||.++|++++.++ ++.+. T Consensus 191 -~----~~~--------~~~~~~~~g~vPvv~~~n---------~~~g~sd~e~v~~liDa~~~~~s~~~~~~~~~~~p~ 248 (453) T protein:vir:39 191 -F----YNM--------TEQAPNPFDDLPVVEFYF---------NEERMSIFESVISLVNAFNKAISEKANDVDYFSDQY 248 (453) T ss_pred -c----eee--------ecccccCCCceeEEEecC---------CCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCce Confidence 0 000 112336778888988864 256999999999999999999999999996 44454 Q ss_pred eecchHHhccCCCCcccccCccCCcccceeeee--cCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCcccccc Q lcl|Aclame:pro 303 VFVSDVMLRTVPDESGMPPPQVFDPDVNVYKSI--RMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSF 380 (517) Q Consensus 303 i~v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~--~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~ 380 (517) .++....+ +.. ....+... +++... .+...++.+..++++++.+.+...++.+.+.|...++... +++ T Consensus 249 ~~~~g~~~----~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~l~~~I~~~s~~p~--~~~ 318 (453) T protein:vir:39 249 LTFLGAAV----EEE---DLKNIRSN-RVINYYGESSEAKNVDVKFLEKPDSDSQTENLLDRLTKLIFQTTMVAN--ISD 318 (453) T ss_pred eeeecCCC----Cch---hhhhhhhc-ceeeecCCCCCCCCCceeEEeecCCHHHHHHHHHHHHHHHHHHhCCcc--ccc Confidence 44422111 110 01112221 121111 1123456788999999999999999999998888776542 444 Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHH Q lcl|Aclame:pro 381 DGRSMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYG 460 (517) Q Consensus 381 ~~~~~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~ 460 (517) ...|..|+.+++++.+.+.++++.+++.|+.+|++++++|+.+.... +.......|+|.|+++++.|..+.++.++ T Consensus 319 ~~~gn~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~----~~~~~~~~i~v~f~~~~p~~~~~~a~~~~ 394 (453) T protein:vir:39 319 ESFGSSSGVSLAYKLQAMSNLALSFQRKFQSSLNSRYKLYCELSTNV----SNKEAWKDIEYTFTRNEPKDIKEQAETAN 394 (453) T ss_pred ccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----CCccccccceEEeCCCCCcCHHHHHHHHH Confidence 45567789999999999999999999999999999999999876532 22334457899999999999999999888 Q ss_pred HHHhcCCCCHHHHHHhhCCCCHHHHHHHHHHHHHhccccCC-------CCCccccCCCCCCCCC Q lcl|Aclame:pro 461 QAKTFGFIPTVEAIQRIFKVPKKTAEQWLEEIRKDQIELDP-------VTISQRAQKRMFGDEE 517 (517) Q Consensus 461 ~~~~~G~~S~~~~l~~~~~~~eeea~~el~~i~~E~~~~~~-------~~~~~~~~~~~~G~ee 517 (517) ++ +|+||.++++..+ |++++ +++|++||++|+.+... ...+.+...+. .++| T Consensus 395 kl--~g~is~et~l~~l-~~v~D-~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~-~~~e 453 (453) T protein:vir:39 395 IL--MGITSQETALSVI-SVIPD-VQAEMEKIKKEEASTAIFDKDKQPSEKGTDTVVPE-TNEE 453 (453) T ss_pred HH--hccCChHHHHHhC-CCCCC-HHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCC-cCCC Confidence 76 5999999999766 55444 67889999998765322 11111222222 2333 No 39 >protein:vir:78083 Length: 537 # NCBI annotation: gp3 # Family: family:all:125 # MgeID: mge:1844 # MgeName: P35 # Cross-refs: genbank:acc:YP_001468787;genbank:gi:157325368;genbank:GeneID:5601845 Probab=100.00 E-value=9.2e-50 Score=289.42 Aligned_cols=460 Identities=11% Similarity=0.037 Sum_probs=300.4 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccc----cC-----cccccccc Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINS----QG-----KIQERDYM 71 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~----~~-----~~~~~~~~ 71 (517) |-+ +.++.+|.+.. ..|. ...+..++.+.++||.|+++.+.++.. .+ +.+...+. T Consensus 8 ~~~-~~~~~~~~~~i-----------~~~~----~~~~~~~~~~~~~YY~g~h~Il~r~~~~~~~~~~~~~d~~~~nnki 71 (537) T protein:vir:78 8 KPI-DQLGGLLNTEI-----------TTYM----ASNHIKWAHIGENYYNQENDIEKSRIFYMNDKGQLREDNYASNVKI 71 (537) T ss_pred ccH-HHHHHHHHHHH-----------HHHH----HHHHHHHHHHHHHHhcccchhhhccccccccccccccccccccccc Confidence 333 45555553311 1111 234567788889999999865543211 11 11223467 Q ss_pred ccChHHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe-C Q lcl|Aclame:pro 72 TLNLRKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD-N 150 (517) Q Consensus 72 ~ln~~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d-~ 150 (517) .+|+++.|+...+++|++.|+++++.+.. .+..++.|+.+++ ++|...+.+++..|+.+|.+|.++|+| + T Consensus 72 ~~nf~k~Ivd~~~~yl~G~Pv~~~~~d~~--------~~e~~~~l~~~~~-~~~~~~~~el~~~~s~~G~ay~~~y~de~ 142 (537) T protein:vir:78 72 SHGFFTELVDQLAQYLLSNGVEVKVKDED--------NTQLDEILQEYFD-EDFQATIDTLVTNASKKGFEGIFARTTSE 142 (537) T ss_pred ccchHHHHHHHHhhhhcccCceeecCcch--------hHHHHHHHHHHhh-ccHHHHHHHHHHHHhhcCeeEEEeeecCC Confidence 89999999999999999999999876532 2456777888775 789999999999999999999999998 6 Q ss_pred CeeEEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEe---cCCcEEEEEEEEEeecceeeccceEEEEEEEeecCC----- Q lcl|Aclame:pro 151 GEIEFSWALANAFYPLRSNSNGISEGVMKSVTTKVI---GNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDN----- 222 (517) Q Consensus 151 g~~~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~---~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~----- 222 (517) |.+++..++|.++||++.+.+. ..+++..++...+ ....+...++|+|+...+. |++ +..+. T Consensus 143 ~~~~~~~i~p~~~~pv~d~~~~-~~~~~~~y~~~~~~~~~~~~~~~~~~evyt~~~i~-----~y~----~~~~~~~~~~ 212 (537) T protein:vir:78 143 GKLKFQTVDGLTLIPVFDDYGV-LKMIIRWYSEIRYSTKQQSTETIWHADVWNEEAVC-----YYI----QDDEGVSTTY 212 (537) T ss_pred CceEEEEEccceeEEEEcCCCC-ceeEEEEEeeeeccccccCcceEEEEEEEcCCcEE-----EEE----ecCCcccccc Confidence 8899999999999999755544 4444443332222 1223445678888766432 111 11110 Q ss_pred ---ccccCcccccccc---------cCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHH Q lcl|Aclame:pro 223 ---EGEIGKRIPLEEL---------YEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYD 290 (517) Q Consensus 223 ---~~~lG~~v~l~~~---------~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s 290 (517) ..-.+.+++.-.. .........-+++++.||+.|+|+ ..|+|+|+++++|||+||.++| T Consensus 213 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~f~nn---------~~~~sd~e~v~~LiDayd~~~S 283 (537) T protein:vir:78 213 KLDEAYNPNPAPHVLAIEESTDADFEDTDGYQVLGRSYSKFPFQLLYNN---------KDGMSDVKRVKSIIDDYDVMNC 283 (537) T ss_pred cccccccccccceeeeccccccccccccccccccccCCcceeEEEeccC---------ccCCCchhhhHHHHHHHHHHHH Confidence 0001111111100 001112233467888999998763 3589999999999999999999 Q ss_pred HHHHHHHhccceeecchHHhccCCCCcccccCccCCcccceeeeecCCCCCCcceEEecccChHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 291 QFWWEIKMGQRTVFVSDVMLRTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEME 370 (517) Q Consensus 291 ~~~~e~~~~~~~i~v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~ 370 (517) ++++.++.-...++|-.++ ++.....|..+.+.++.+..+++++.++.+++++..++....++.+.+.|... T Consensus 284 ~~an~~~~~~~~ilvi~g~--------~~~~~~~~~~~l~~~~~i~v~~d~~~v~~l~~~~~~~~~e~~ld~L~~~I~~~ 355 (537) T protein:vir:78 284 FLSNNLQDFSEAIYVVKGF--------SGDSTDKLRQNIKAKKMIGVNGDNAGMEIQTVSIPYEARKAKMDIDVENIYRS 355 (537) T ss_pred hhhhHHHHhcCceeeeecC--------CCccchhHHHHHhhcCceeecCCCCceeEEEecCCHHHHHHHHHHHHHHHHHh Confidence 9999997655566662221 11111124445556666666666778999999999999999999999888655 Q ss_pred hCCCccccccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccC Q lcl|Aclame:pro 371 LKLSVGTFSFDGRSMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQ 450 (517) Q Consensus 371 ~g~s~~~~~~~~~~~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~ 450 (517) + ..+. +.+...|..|+.+++.+.+.+.++++.+++.|+.+|++++++|+.+++.. +....+...|.|+|++.+|. T Consensus 356 s-~~~~-~~~~~~gn~SGvAlk~~~~~l~~ka~~ke~~f~~~l~~~~~~i~~~~~~~---~~~~~d~~~i~i~f~~~~P~ 430 (537) T protein:vir:78 356 G-MGFN-STAVGDGNVTNVVIKSRYTLLAMKARKMETSLRKVLRWCADMVVSDIALR---GLGEYDSNDICFEIEPHVLA 430 (537) T ss_pred c-CCCC-CccccccCCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCcccccceeeEEeccCCCC Confidence 4 3333 24445577789999999999999999999999999999999999987643 33334556799999999999 Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHhhCCCCHHHHHHHHHHH------------HHhccccCCC-CCccccCCCCC---- Q lcl|Aclame:pro 451 DRSALLRFYGQAKTFGFIPTVEAIQRIFKVPKKTAEQWLEEI------------RKDQIELDPV-TISQRAQKRMF---- 513 (517) Q Consensus 451 d~~~~~~~~~~~~~~G~~S~~~~l~~~~~~~eeea~~el~~i------------~~E~~~~~~~-~~~~~~~~~~~---- 513 (517) |..+.++++.+++++|++|.+|+|+.+..+++.|.++...+. ++++++.... ++.+....+.. T Consensus 431 n~~e~a~~~~~l~~~giiS~eT~l~~~p~vdd~e~ek~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (537) T protein:vir:78 431 NELDIATTRKTEAETEALKIGNIMTVAPRIGDDETLKLIAEELDLDYNELKDALAEQDAQSLDVSPDVQAMLDGLPVNAN 510 (537) T ss_pred CHHHHHHHHHHHHhcCcchHHHHHHhCCCCCCHHHHHHHHHHHHhhhhhhhhhhhhhcccccCcCcchhhhcCCCCCCCC Confidence 999999999999999999999998765334443322111111 0111110000 00000000000 Q ss_pred ---CCCC Q lcl|Aclame:pro 514 ---GDEE 517 (517) Q Consensus 514 ---G~ee 517 (517) +++. T Consensus 511 ~~~~d~~ 517 (537) T protein:vir:78 511 QPPVDPN 517 (537) T ss_pred CCCCCcc Confidence 0111 No 40 >protein:vir:1236 Length: 483 # NCBI annotation: similar to phage Spp1 gp6 (portal protein) # Family: family:all:125 # MgeID: mge:25 # MgeName: phi ETA # Cross-refs: genbank:acc:NP_510935;genbank:gi:17426269;genbank:GeneID:927380 Probab=100.00 E-value=4.5e-50 Score=291.11 Aligned_cols=432 Identities=15% Similarity=0.145 Sum_probs=287.5 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccc---c---CccccccccccC Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINS---Q---GKIQERDYMTLN 74 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~---~---~~~~~~~~~~ln 74 (517) +-+.+.|++++.+. .....++.++.+||.|+++.++.... . ...+...+.++| T Consensus 34 e~~~~~i~~~i~~~---------------------~~~~~r~~~l~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~ki~~n 92 (483) T protein:vir:12 34 ETLEEMIVRYIKQH---------------------LEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITN 92 (483) T ss_pred hhHHHHHHHHHHHH---------------------HHHHHHHHHHHHHhccccccccccccccccccccccccccccccc Confidence 22233333333211 12345778888999999865432211 1 112233467899 Q ss_pred hHHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe-CCee Q lcl|Aclame:pro 75 LRKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD-NGEI 153 (517) Q Consensus 75 ~~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d-~g~~ 153 (517) +++.|+...+++|+++++++++++. ..++.|+.+++ |+|...+.+++..++.+|.+|+.+|+| +|++ T Consensus 93 ~~k~Ivd~~~~~l~G~p~~~~~~d~-----------~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~y~~v~~d~d~~~ 160 (483) T protein:vir:12 93 FHANLVDQKVSYIVGKPIAFKHTDD-----------EVVKRIDEVLG-NRFDDKLHSVLTGASNKGIEWLHPYLDEEGEF 160 (483) T ss_pred hHHHHHHHHhhhhcccCceeccCCh-----------HHHHHHHHHHh-ccHHHHHHHHHHHHhhCCeEEEEEEEcCCCce Confidence 9999999999999999999987653 35677888876 579999999999999999999999998 5889 Q ss_pred EEEEEcCCeEEEEEEcCC-ceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCccccc Q lcl|Aclame:pro 154 EFSWALANAFYPLRSNSN-GISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPL 232 (517) Q Consensus 154 ~i~~v~a~~~~P~~~~~~-~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l 232 (517) ++.+++|.+++|++.+.. +...+++.++.. .+. +.+|+|+...+ .+..+..+. .++. T Consensus 161 ~i~~~~p~~~~~v~d~~~~~~~~~~ir~~~~--~~~-----~~~~~y~~~~v---------~~~~~~~~~------~~~~ 218 (483) T protein:vir:12 161 KLFRVPAEQGIPIWTDKEHEELEAFIRMYKL--ENE-----TKVEYWDKVTV---------NYYVYENGS------LIPD 218 (483) T ss_pred EEEEEcccceEEEEcCCCCCceEEEEEEEEe--ecc-----eEEEEEecCeE---------EEEEEeCCe------eeec Confidence 999999999999875432 344443333222 111 12355544321 111111110 0000 Q ss_pred cc-ccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeecchHHhc Q lcl|Aclame:pro 233 EE-LYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRTVFVSDVMLR 311 (517) Q Consensus 233 ~~-~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~l~ 311 (517) .. ...........++++.+|+++|+| ++.|.|+|+++++|||++|.++|++++.++.....+.+ +. T Consensus 219 ~~~~~~~~~~~~~~~~~g~vPvv~~~n---------n~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv----~~ 285 (483) T protein:vir:12 219 YSNNLENSKTHFSTGSWGKIPFIPFKN---------NDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYV----LT 285 (483) T ss_pred ccccccccccccccCCCCccceEEecC---------CCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhcCceee----ee Confidence 00 011112223446788889999875 25699999999999999999999999999755444444 22 Q ss_pred cCCCCcccccCccCCcccceeeeecCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHH Q lcl|Aclame:pro 312 TVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEI 391 (517) Q Consensus 312 ~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei 391 (517) ...... ...|..+.+.+..+..+ +++.++.++++++++++...++.+.+.|...++.+.-+++ ..++..||.++ T Consensus 286 g~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~-~~~~n~Sg~Al 359 (483) T protein:vir:12 286 NYDDQE----LPEFKRLLRYYGAIKVS-DNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSD-KFGSAPSGVAL 359 (483) T ss_pred cCCccc----chhHHHhhhhccccccC-CCCcceEEeecCCHHHHHHHHHHHHHHHHHHhCCCCCCcc-ccccCcHHHHH Confidence 111111 11233344445555544 3456889999999999999999988888777765533332 22356789999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCCHH Q lcl|Aclame:pro 392 VSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTV 471 (517) Q Consensus 392 ~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~ 471 (517) +++...+..++..+++.|+.+|+++++.|+.+... ......++|.|++.+|.|..+.++.++++ +|+||.+ T Consensus 360 ~~~~~~l~~k~~~~~~~f~~~l~~~~~li~~~~~~-------~~~~~~i~v~f~~~~p~~~~~~a~~~~kl--~GiiS~e 430 (483) T protein:vir:12 360 EFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDI-------KGEHKDVDISFNYNKVANTELQVQTAQQS--MGIVSHE 430 (483) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CCccceeeEEeCCCCCCCHHHHHHHHHHH--hccCchH Confidence 99999999999999999999999999999876431 23456789999999999999999999887 4999999 Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhccccC---CCCCc--cc--cCCCCCCCCC Q lcl|Aclame:pro 472 EAIQRIFKVPKKTAEQWLEEIRKDQIELD---PVTIS--QR--AQKRMFGDEE 517 (517) Q Consensus 472 ~~l~~~~~~~eeea~~el~~i~~E~~~~~---~~~~~--~~--~~~~~~G~ee 517 (517) |++.+++++++ +++|++||++|+.+.. +...+ .+ ++....|++| T Consensus 431 t~~~~~~~v~d--~~~E~~ri~~E~~~~~~~~~~~~~~~~d~~~~~~~~~~~e 481 (483) T protein:vir:12 431 TVLENHPFVED--LQAELERIEQEQMEYNKQLPNLDDGGADGAQQQERSNNKE 481 (483) T ss_pred HHHHhCCCCCC--HHHHHHHHHHHHHHHHhhcccccccccCCcccCCCCCccc Confidence 99887655544 6789999988764321 11111 11 1111112222 No 41 >protein:vir:93747 Length: 472 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1475 # MgeName: 55 # Cross-refs: genbank:acc:YP_240454;genbank:gi:66396119;genbank:GeneID:5133516 Probab=100.00 E-value=5.9e-50 Score=290.46 Aligned_cols=449 Identities=14% Similarity=0.108 Sum_probs=289.5 Q ss_pred CchHHHHHHHHHHHHHHhhc--ccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccc---c---Cccccccccc Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSG--QTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINS---Q---GKIQERDYMT 72 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~---~---~~~~~~~~~~ 72 (517) |..-..+++=+-++-..... +.|....+ --.+.+.++.++.+||.|+++.++.... . ...+...+.+ T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~-----~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~ri~ 79 (472) T protein:vir:93 5 QPTQTEIFDAIVRTNNKPETLEEMIVRYIK-----QHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMI 79 (472) T ss_pred CCcchhhhhceeeecCchhhHHHHHHHHHH-----HHHHHHHHHHHHHHHhccccccccccchhhccccccccccccccc Confidence 44433333311111110000 01111100 0123456788889999999765433211 1 1112234577 Q ss_pred cChHHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe-CC Q lcl|Aclame:pro 73 LNLRKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD-NG 151 (517) Q Consensus 73 ln~~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d-~g 151 (517) +|+|+.|+...|++|+++++++++++. ..+++|+.+++ |+|...+.+++..++.+|.+|+.+|+| +| T Consensus 80 ~n~~~~ivd~~~~~l~g~~~~~~~~d~-----------~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~d~ 147 (472) T protein:vir:93 80 TNFHANLVDQKVSYIVGKPIAFKHTDD-----------EVVKRIDEVLG-NRFDDKLHSVLTGASNKGIEWLHPYLDEEG 147 (472) T ss_pred cchHHHHHHHHhhhhcccCeeeccCCh-----------HHHHHHHHHHh-ccHHHHHHHHHHHHhhcCeEEEEEEECCCC Confidence 899999999999999999999987653 35678888875 689999999999999999999999998 57 Q ss_pred eeEEEEEcCCeEEEEEEcC-CceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCccc Q lcl|Aclame:pro 152 EIEFSWALANAFYPLRSNS-NGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRI 230 (517) Q Consensus 152 ~~~i~~v~a~~~~P~~~~~-~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v 230 (517) ++++.+++|.+++|++.+. .+...+++.++ . .... +.+|+|....+ ....+..+.... . T Consensus 148 ~~~i~~~~p~~~~~i~d~~~~~~~~~~ir~~-~-~~~~-----~~~~~~~~~~~---------~~~~~~~~~~~~--~-- 207 (472) T protein:vir:93 148 EFKLFRVPAEQGIPIWTDKEHEELEAFIRMY-K-LENE-----TKVEYWDKVTV---------NYYVYENGSLIP--D-- 207 (472) T ss_pred ceEEEEEcccceEEEEcCCCCCceEEEEEEE-E-eecc-----eeEEEEecCeE---------EEEEEecCeeee--c-- Confidence 8999999999999987543 33333333322 2 2211 12344433221 111111110000 0 Q ss_pred ccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeecchHHh Q lcl|Aclame:pro 231 PLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRTVFVSDVML 310 (517) Q Consensus 231 ~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~l 310 (517) ..............++++++||++|+|+ +.|+|+|++++++||++|.++|++.+.++.....+.+-.++ T Consensus 208 -~~~~~~~~~~~~~~~~~~~vPvv~~~nn---------~~g~s~~e~v~~liDa~~~~~s~~~~~~~~~~~~~~~~~g~- 276 (472) T protein:vir:93 208 -YSNNLENSKTHFSTGSWGKIPFIPFKNN---------DLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLTNY- 276 (472) T ss_pred -ccccccccccccccCCCCCcceEEecCC---------CCCCCchhhhHHHHHHHHHHHHHHHHHHHHhcCceeEeecC- Confidence 0000111123345578899999999752 57999999999999999999999999998655555541111 Q ss_pred ccCCCCcccccCccCCcccceeeeecCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHH Q lcl|Aclame:pro 311 RTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATE 390 (517) Q Consensus 311 ~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAte 390 (517) .... ...+..+...+..+..+ +++.+++++++++.+++...++.+.+.|...++...-+++ ..++..||.+ T Consensus 277 ---~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~-~~~~n~Sg~A 347 (472) T protein:vir:93 277 ---DDQE----LPEFKRLLRYYGAIKVS-DNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSD-KFGSAPSGVA 347 (472) T ss_pred ---Cccc----chhhHHHHhhccccccC-CCCcceeEeecCCHHHHHHHHHHHHHHHHHHhCCCCCCcc-ccccCchHHH Confidence 1111 11133334445555544 3446888999999999999999998888887766543332 2235678999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCCH Q lcl|Aclame:pro 391 IVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPT 470 (517) Q Consensus 391 i~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~ 470 (517) ++++.+.+..+++.+++.|+.+|+++++.|+.+.. .......|+|+|+++++.|..+.++.++++ +|++|. T Consensus 348 l~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~-------~~~~~~~i~v~f~~~~p~~~~~~~~~~~k~--~giis~ 418 (472) T protein:vir:93 348 LEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFD-------IKGEHKDVDISFNYNKVANTELQVQTAQQS--MGIVSH 418 (472) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCcccceeeEEeCCCCCCCHHHHHHHHHHH--hccCch Confidence 99999999999999999999999999999887643 123446789999999999999999988886 499999 Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhccccCC---CCCccccCCCCC----CCCC Q lcl|Aclame:pro 471 VEAIQRIFKVPKKTAEQWLEEIRKDQIELDP---VTISQRAQKRMF----GDEE 517 (517) Q Consensus 471 ~~~l~~~~~~~eeea~~el~~i~~E~~~~~~---~~~~~~~~~~~~----G~ee 517 (517) ++++.+++++++ +++|++||++|+.+... ...+..++.+.. +++| T Consensus 419 et~l~~l~~~~d--~~~E~~ri~~E~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 470 (472) T protein:vir:93 419 ETVLENHPFVED--LQAELERIEQEQMEYNKQLPNLDDGGADGAQQQERSNNKE 470 (472) T ss_pred HHHHHhCCCCCC--HHHHHHHHHHHHHHHHHhccCcCcccCCCCCCCCCCCccc Confidence 999987765554 67799999887643211 111111111111 2222 No 42 >protein:vir:96266 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1612 # MgeName: ROSA # Cross-refs: genbank:acc:YP_240308;genbank:gi:66395972;genbank:GeneID:5133343 Probab=100.00 E-value=4.8e-50 Score=290.95 Aligned_cols=445 Identities=14% Similarity=0.092 Sum_probs=286.8 Q ss_pred hHHHHHHH---------HHHHHHHhhc--ccchh-hhccccCcCCHHHHHHHHHHHHHhcCCCccccccc-cc-----Cc Q lcl|Aclame:pro 3 VIQRIKNF---------FKRGGYALSG--QTLKS-INDHEKINIDPNELARIERNLRQYEGDYPQVEYIN-SQ-----GK 64 (517) Q Consensus 3 ~~~~ik~~---------~~~~~~~~~~--~~~~~-~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~-~~-----~~ 64 (517) |+.+|+.= |+.+-..... +.|+. +..| .....++.+.++||.|+++-+.... .+ .. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~------~~~~~~~~~l~~Yy~g~~~i~~~~~~~~~~~~~~~ 74 (474) T protein:vir:96 1 MINIIRMPWDKPYGEEVVEQMKPKVETQEEMIIRLINNH------KQKLKDINVGQKYYDKDNDINYQAYKQDLHGNIDY 74 (474) T ss_pred CcccccCCCCCCCCcchhhhccccccchHHHHHHHHHHH------HHHHHHHHHHHHHhcccCccccccchhhhcccccc Confidence 33322211 1110000000 00100 0111 1234577888999999975433211 11 11 Q ss_pred cccccccccChHHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEE Q lcl|Aclame:pro 65 IQERDYMTLNLRKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTV 144 (517) Q Consensus 65 ~~~~~~~~ln~~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~ 144 (517) .+...+.++|+|+.|+...+++|+++|+++++++. ..++.|+.+++ |+|...+.+++..++++|.+|+ T Consensus 75 ~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~~~~-----------~~~~~l~~~~~-n~~~~~~~~l~~~~~~~G~~~~ 142 (474) T protein:vir:96 75 TKPDWRITTNFHQNLVDQKVSYVAGKPVTYAHDDD-----------KVLDVIHQVLD-TRWDNKLIDILTAASNKGIDWL 142 (474) T ss_pred cccccccccchHHHHHHhhhhhhcccCceeccCCh-----------HHHHHHHHHHh-ccHHHHHHHHHHHHhhCCeEEE Confidence 22334678899999999999999999999987653 35677888875 6799999999999999999999 Q ss_pred EEEEe-CCeeEEEEEcCCeEEEEEEcCC-ceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCC Q lcl|Aclame:pro 145 RPYVD-NGEIEFSWALANAFYPLRSNSN-GISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDN 222 (517) Q Consensus 145 k~~~d-~g~~~i~~v~a~~~~P~~~~~~-~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~ 222 (517) ++|+| +|.+++.+++|.+++|++.+.. +...+ +++.+.. + .. +++|+|+...+ .+..+..+ T Consensus 143 ~~~~d~~~~~~i~~~~p~~~~~v~d~~~~~~~~a-~ir~~~~--~-~~---~~~~vy~~~~i---------~~~~~~~~- 205 (474) T protein:vir:96 143 QVYINEDGELKLFRVPAEQAIPIWTDKEREQLNA-FIRIFTF--N-GE---TKVEYWTAETV---------TYYVYENG- 205 (474) T ss_pred EeeeCCCCceEEEEEcccceEEEEcCCCCCceEE-EEEEEee--c-Ce---eEEEEEeCCeE---------EEEEEcCC- Confidence 99997 6899999999999999865543 33333 3322221 1 11 23566665432 11111111 Q ss_pred ccccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccce Q lcl|Aclame:pro 223 EGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRT 302 (517) Q Consensus 223 ~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~ 302 (517) ..... .... .........-++++++|+++|+++ +.|.|+|++++++||+||.++|++++.++..... T Consensus 206 ~~~~~--~~~~--~~~~~~~~~~~~~~~vPvv~~~nn---------~~~~~d~e~v~~liDa~d~~~S~~~~~~~~~~~p 272 (474) T protein:vir:96 206 GLIPD--FYYG--DEHIQTHFSTGSWERVPFIAFKNN---------PEEVSDIWMYKSFVDAIDKRLSDVQNMFDESVEL 272 (474) T ss_pred ceeec--cccc--cccccCcccccCCCccceEEecCC---------CCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcc Confidence 00000 0000 111112234467888889988652 4699999999999999999999999999766666 Q ss_pred eecchHHhccCCCCcccccCccCCcccceeeeecCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCC Q lcl|Aclame:pro 303 VFVSDVMLRTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDG 382 (517) Q Consensus 303 i~v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~ 382 (517) ++|..++ . ......|..+.+.+..+..+ +++.++.++++++.+++...++.+.+.|...++...-++ ... T Consensus 273 ~lv~~g~----~----~~~~~~~~~~~~~~~~i~~~-~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~-~~~ 342 (474) T protein:vir:96 273 IYILRGY----E----GEDLSEFMEGLKYYKAINVS-SDGGVETIQVEVPVASTKEYLDMMRAYIVEFGQGVDFQT-DKF 342 (474) T ss_pred hhhhcCC----C----cccccchhhhhhccceeecc-CCCceeEEeccCCHHHHHHHHHHHHHHHHHHhCCcCccc-ccc Confidence 6663332 1 11111233444455555543 345789999999999999999999998888876542221 122 Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHH Q lcl|Aclame:pro 383 RSMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQA 462 (517) Q Consensus 383 ~~~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~ 462 (517) ++..||.+++++.+.+.++++.+++.|+.+|.++++.|+.+.. ...+...|+|+|++++|.|..+.++.+. T Consensus 343 ~~n~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~~i~~~~g-------~~~d~~~i~i~f~~~~p~~~~e~a~~~~-- 413 (474) T protein:vir:96 343 GSATSGIALKFLYTNLNLKANKLKNKANVALQELMQFILDFNK-------IKLDAKEIEITFNFNVMVNDLEQSQIGA-- 413 (474) T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCcccceeeEEecCCCccCHHHHHHHHH-- Confidence 3567899999999999999999999999999999999887532 2334567999999999999888777654 Q ss_pred HhcCCCCHHHHHHhhCCCCHHHHHHHHHHHHHhccccCCC---CCc------cccCCCCCCCCC Q lcl|Aclame:pro 463 KTFGFIPTVEAIQRIFKVPKKTAEQWLEEIRKDQIELDPV---TIS------QRAQKRMFGDEE 517 (517) Q Consensus 463 ~~~G~~S~~~~l~~~~~~~eeea~~el~~i~~E~~~~~~~---~~~------~~~~~~~~G~ee 517 (517) .+|+||.+|++.++ |++++ +++|++||++|+.+..+. ..+ ..+.++.+.+.| T Consensus 414 -~~giiS~et~~~~l-p~v~D-~~~E~eri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 474 (474) T protein:vir:96 414 -QSQYLSKETLVRHH-PWVDD-PKAELERLDEEQLELNKQLPNLDDGGADGAQQQQQSENNQSK 474 (474) T ss_pred -HcCCCChHHHHHhC-CCCCC-HHHHHHHHHHHHHHHHhhccccccccCCCCCCcCCCCccccC Confidence 46999999999766 55444 678999999886432211 111 111111111111 No 43 >protein:vir:95899 Length: 474 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1588 # MgeName: 71 # Cross-refs: genbank:acc:YP_240382;genbank:gi:66396046;genbank:GeneID:5133410 Probab=100.00 E-value=4.8e-50 Score=290.95 Aligned_cols=445 Identities=14% Similarity=0.092 Sum_probs=286.8 Q ss_pred hHHHHHHH---------HHHHHHHhhc--ccchh-hhccccCcCCHHHHHHHHHHHHHhcCCCccccccc-cc-----Cc Q lcl|Aclame:pro 3 VIQRIKNF---------FKRGGYALSG--QTLKS-INDHEKINIDPNELARIERNLRQYEGDYPQVEYIN-SQ-----GK 64 (517) Q Consensus 3 ~~~~ik~~---------~~~~~~~~~~--~~~~~-~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~-~~-----~~ 64 (517) |+.+|+.= |+.+-..... +.|+. +..| .....++.+.++||.|+++-+.... .+ .. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~------~~~~~~~~~l~~Yy~g~~~i~~~~~~~~~~~~~~~ 74 (474) T protein:vir:95 1 MINIIRMPWDKPYGEEVVEQMKPKVETQEEMIIRLINNH------KQKLKDINVGQKYYDKDNDINYQAYKQDLHGNIDY 74 (474) T ss_pred CcccccCCCCCCCCcchhhhccccccchHHHHHHHHHHH------HHHHHHHHHHHHHhcccCccccccchhhhcccccc Confidence 33322211 1110000000 00100 0111 1234577888999999975433211 11 11 Q ss_pred cccccccccChHHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEE Q lcl|Aclame:pro 65 IQERDYMTLNLRKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTV 144 (517) Q Consensus 65 ~~~~~~~~ln~~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~ 144 (517) .+...+.++|+|+.|+...+++|+++|+++++++. ..++.|+.+++ |+|...+.+++..++++|.+|+ T Consensus 75 ~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~~~~-----------~~~~~l~~~~~-n~~~~~~~~l~~~~~~~G~~~~ 142 (474) T protein:vir:95 75 TKPDWRITTNFHQNLVDQKVSYVAGKPVTYAHDDD-----------KVLDVIHQVLD-TRWDNKLIDILTAASNKGIDWL 142 (474) T ss_pred cccccccccchHHHHHHhhhhhhcccCceeccCCh-----------HHHHHHHHHHh-ccHHHHHHHHHHHHhhCCeEEE Confidence 22334678899999999999999999999987653 35677888875 6799999999999999999999 Q ss_pred EEEEe-CCeeEEEEEcCCeEEEEEEcCC-ceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCC Q lcl|Aclame:pro 145 RPYVD-NGEIEFSWALANAFYPLRSNSN-GISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDN 222 (517) Q Consensus 145 k~~~d-~g~~~i~~v~a~~~~P~~~~~~-~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~ 222 (517) ++|+| +|.+++.+++|.+++|++.+.. +...+ +++.+.. + .. +++|+|+...+ .+..+..+ T Consensus 143 ~~~~d~~~~~~i~~~~p~~~~~v~d~~~~~~~~a-~ir~~~~--~-~~---~~~~vy~~~~i---------~~~~~~~~- 205 (474) T protein:vir:95 143 QVYINEDGELKLFRVPAEQAIPIWTDKEREQLNA-FIRIFTF--N-GE---TKVEYWTAETV---------TYYVYENG- 205 (474) T ss_pred EeeeCCCCceEEEEEcccceEEEEcCCCCCceEE-EEEEEee--c-Ce---eEEEEEeCCeE---------EEEEEcCC- Confidence 99997 6899999999999999865543 33333 3322221 1 11 23566665432 11111111 Q ss_pred ccccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccce Q lcl|Aclame:pro 223 EGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRT 302 (517) Q Consensus 223 ~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~ 302 (517) ..... .... .........-++++++|+++|+++ +.|.|+|++++++||+||.++|++++.++..... T Consensus 206 ~~~~~--~~~~--~~~~~~~~~~~~~~~vPvv~~~nn---------~~~~~d~e~v~~liDa~d~~~S~~~~~~~~~~~p 272 (474) T protein:vir:95 206 GLIPD--FYYG--DEHIQTHFSTGSWERVPFIAFKNN---------PEEVSDIWMYKSFVDAIDKRLSDVQNMFDESVEL 272 (474) T ss_pred ceeec--cccc--cccccCcccccCCCccceEEecCC---------CCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcc Confidence 00000 0000 111112234467888889988652 4699999999999999999999999999766666 Q ss_pred eecchHHhccCCCCcccccCccCCcccceeeeecCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCC Q lcl|Aclame:pro 303 VFVSDVMLRTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDG 382 (517) Q Consensus 303 i~v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~ 382 (517) ++|..++ . ......|..+.+.+..+..+ +++.++.++++++.+++...++.+.+.|...++...-++ ... T Consensus 273 ~lv~~g~----~----~~~~~~~~~~~~~~~~i~~~-~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~-~~~ 342 (474) T protein:vir:95 273 IYILRGY----E----GEDLSEFMEGLKYYKAINVS-SDGGVETIQVEVPVASTKEYLDMMRAYIVEFGQGVDFQT-DKF 342 (474) T ss_pred hhhhcCC----C----cccccchhhhhhccceeecc-CCCceeEEeccCCHHHHHHHHHHHHHHHHHHhCCcCccc-ccc Confidence 6663332 1 11111233444455555543 345789999999999999999999998888876542221 122 Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHH Q lcl|Aclame:pro 383 RSMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQA 462 (517) Q Consensus 383 ~~~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~ 462 (517) ++..||.+++++.+.+.++++.+++.|+.+|.++++.|+.+.. ...+...|+|+|++++|.|..+.++.+. T Consensus 343 ~~n~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~~i~~~~g-------~~~d~~~i~i~f~~~~p~~~~e~a~~~~-- 413 (474) T protein:vir:95 343 GSATSGIALKFLYTNLNLKANKLKNKANVALQELMQFILDFNK-------IKLDAKEIEITFNFNVMVNDLEQSQIGA-- 413 (474) T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCcccceeeEEecCCCccCHHHHHHHHH-- Confidence 3567899999999999999999999999999999999887532 2334567999999999999888777654 Q ss_pred HhcCCCCHHHHHHhhCCCCHHHHHHHHHHHHHhccccCCC---CCc------cccCCCCCCCCC Q lcl|Aclame:pro 463 KTFGFIPTVEAIQRIFKVPKKTAEQWLEEIRKDQIELDPV---TIS------QRAQKRMFGDEE 517 (517) Q Consensus 463 ~~~G~~S~~~~l~~~~~~~eeea~~el~~i~~E~~~~~~~---~~~------~~~~~~~~G~ee 517 (517) .+|+||.+|++.++ |++++ +++|++||++|+.+..+. ..+ ..+.++.+.+.| T Consensus 414 -~~giiS~et~~~~l-p~v~D-~~~E~eri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 474 (474) T protein:vir:95 414 -QSQYLSKETLVRHH-PWVDD-PKAELERLDEEQLELNKQLPNLDDGGADGAQQQQQSENNQSK 474 (474) T ss_pred -HcCCCChHHHHHhC-CCCCC-HHHHHHHHHHHHHHHHhhccccccccCCCCCCcCCCCccccC Confidence 46999999999766 55444 678999999886432211 111 111111111111 No 44 >protein:vir:9871 Length: 429 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:177 # MgeName: 315.5 # Cross-refs: genbank:acc:NP_795633;genbank:gi:28876408;genbank:GeneID:1257942 Probab=100.00 E-value=3.2e-50 Score=291.93 Aligned_cols=424 Identities=8% Similarity=0.001 Sum_probs=290.7 Q ss_pred hhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccChHHHHHHHHhhhhcCCcceeEec Q lcl|Aclame:pro 18 LSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLRKLSADVLSGLVFNEQCEVYVS 97 (517) Q Consensus 18 ~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~~~i~~~~A~ll~~e~~~i~~~ 97 (517) |..+.|..+..+- .....++.+.++||.|+++.+..... .+.+...+.++|+|+.|+...+++||+++++++++ T Consensus 1 l~~~~l~~~i~~~-----~~~~~r~~~l~~yy~g~~~il~~~~~-~~~~~~~ki~~n~~~~ivd~~~~~l~g~~~~~~~~ 74 (429) T protein:vir:98 1 MTKDLLSELIQKH-----RSFNLSYSAYKQLYEGDHAILQQKQK-EQYKPDNRLVVNFAKYIVDTFNGYFIGVPVQTSHE 74 (429) T ss_pred CCHHHHHHHHHHH-----HHHHHHHHHHHHHhcccccccccccc-ccCCCcceeecchHHHHHHHHhhhhcccCceeecC Confidence 1112222221111 12346788888999999876654333 23334557889999999999999999999999886 Q ss_pred CcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe-CCeeEEEEEcCCeEEEEEEcCCc-eEE Q lcl|Aclame:pro 98 DAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD-NGEIEFSWALANAFYPLRSNSNG-ISE 175 (517) Q Consensus 98 ~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d-~g~~~i~~v~a~~~~P~~~~~~~-~~~ 175 (517) +. ..++.|+.++++|+|...+.+++..++++|.+|+.+|+| +|++++.+++|.+++|++.+..+ ... T Consensus 75 ~~-----------~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~~~~~~p~~~~~v~dd~~~~~~~ 143 (429) T protein:vir:98 75 NK-----------QVSNYLELLDGYNDQDDNNAELSKICSIYGHGYELVFNDENAEAGITYLTPLEAFIVYDDSIRQKPL 143 (429) T ss_pred Ch-----------HHHHHHHHHHhhcCHhHHHHHHHHHHhhcCeEEEEEEecCCCcEEEEEEcccceEEEEeCCCCCceE Confidence 53 356789999999999999999999999999999999997 68999999999999999776543 333 Q ss_pred EEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccccCCCCcceEEcCCCcceEEE Q lcl|Aclame:pro 176 GVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNY 255 (517) Q Consensus 176 ~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~ 255 (517) +++.++ . ..+ .. .+.++.+.. . + ..|..++. |..+ .+..-++++++|+++ T Consensus 144 ~~i~~~-~--~~~-~~--~~~~~~~~~-------~--~--~~~~~~~~---~~~~----------~~~~~~~~g~vPvv~ 193 (429) T protein:vir:98 144 FAVRYF-Y--NKG-GV--LEGSYSDAS-------N--I--TYFKDGEK---GIEI----------GESEPHPFDGVPMIE 193 (429) T ss_pred EEEEEE-E--ecC-ce--EEEEEEeCc-------e--E--EEEEecCC---ceEe----------cccccccCCccceEE Confidence 333322 1 111 11 112222211 0 1 11322211 1110 111235678888998 Q ss_pred ecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeecchHHhccCCCCcccccCccCCcccceeeee Q lcl|Aclame:pro 256 LKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRTVFVSDVMLRTVPDESGMPPPQVFDPDVNVYKSI 335 (517) Q Consensus 256 ~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~ 335 (517) |+| .+.|.|+|+++++++|++|.++|++++.++.....+.+-..+ ... ..+..+...+..+ T Consensus 194 ~~n---------~~~g~sd~e~v~~liD~~d~~~s~~~~~~~~~~~p~~~i~g~-----~~~-----~~~~~~~~~~~~~ 254 (429) T protein:vir:98 194 YVE---------NEERQSLLASVVTLINAFNKAISEKANDVEYFADAYLKILGA-----ELD-----DETLKSLRDTRII 254 (429) T ss_pred ecC---------CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeeecC-----CCC-----cchhhhHhhCcee Confidence 865 256999999999999999999999999997666655552111 111 1123333333434 Q ss_pred cCC---CCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 336 RMG---TDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVSENDLTYRTRNDHVYEVEQF 412 (517) Q Consensus 336 ~~~---~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a~~~~~~~t~~~~~~~~~~a 412 (517) ..+ +.++.++.++++++.+.+...++.+.+.|...++... +++...|..||.+++++.+.+.+++..+++.|+.+ T Consensus 255 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~--~~~~~~gn~Sg~Al~~~~~~l~~k~~~~~~~~~~~ 332 (429) T protein:vir:98 255 NLKDTDAQQLTVEFLQKPDADATQEHLLDRLENLIFRTAMVAN--ISDESFGTASGIALRYRLQAMDNLAKTKERKFMSG 332 (429) T ss_pred eccCCCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCccc--cCccccccchHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 332 2334678899999999999999999988888776642 45555577899999999999999999999999999 Q ss_pred HHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCCHHHHHHhhCCCCHHHHHHHHHHH Q lcl|Aclame:pro 413 IKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTVEAIQRIFKVPKKTAEQWLEEI 492 (517) Q Consensus 413 l~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~~~l~~~~~~~eeea~~el~~i 492 (517) |+++++.|+.+.... + ...+...|+|.|++.++.|..+.++.++++ +|+||.+|++..+.++++ +++|++|| T Consensus 333 l~~~~~li~~~~~~~---~-~~~d~~~i~v~f~~~~p~~~~~~a~~~~kl--~g~is~et~~~~l~~v~d--~~~E~~ri 404 (429) T protein:vir:98 333 MNRRYKLIASYPTSK---I-GPKDWIGIKYKFTRNLPANLLEESQIAGNL--AGIVSEETQVGVLSIVEN--PQKEIERK 404 (429) T ss_pred HHHHHHHHHHHhccC---C-CccccccceEEeCCCCCcCHHHHHHHHHHH--hccCchHHHHHhCCCCCC--HHHHHHHH Confidence 999999999876432 2 223445689999999999999999988886 599999998877755554 56789999 Q ss_pred HHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 493 RKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 493 ~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) ++|+.+......+.-.......+.| T Consensus 405 ~~E~~~~~~~~~~~~~~~~~~~~~~ 429 (429) T protein:vir:98 405 NSDKSTLISRQAGGLNGQNTTTILE 429 (429) T ss_pred HHHHHHHHHHHHhhhcCCCCCCCCC Confidence 9998654221111111111122222 No 45 >protein:vir:94805 Length: 492 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1531 # MgeName: 29 # Cross-refs: genbank:acc:YP_240531;genbank:gi:66396197;genbank:GeneID:5133585 Probab=100.00 E-value=1.5e-49 Score=288.20 Aligned_cols=454 Identities=15% Similarity=0.133 Sum_probs=295.8 Q ss_pred CchHHHHHHHHHHHHHHhhccc--chhhhcc-----ccCcCC-----------HHHHHHHHHHHHHhcCCCcccccccc- Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQT--LKSINDH-----EKINID-----------PNELARIERNLRQYEGDYPQVEYINS- 61 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~--~~~~~~~-----~~i~~~-----------~~~~~~i~~~~~~Y~g~~~~~~~~~~- 61 (517) ..+|..+-..+-|+|+.+...+ -..+..+ .+.... .+...++.++++||.|+++.++.... T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~r~~~l~~YY~g~~~I~~~~~~~ 83 (492) T protein:vir:94 4 IQLISQVAQALIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPV 83 (492) T ss_pred HHHHHHHHHHHhcCCceeecCccchhhhhhcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccc Confidence 8888888887777776654421 1111000 000001 12345677788999999865432211 Q ss_pred c-----CccccccccccChHHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHH Q lcl|Aclame:pro 62 Q-----GKIQERDYMTLNLRKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPT 136 (517) Q Consensus 62 ~-----~~~~~~~~~~ln~~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a 136 (517) . ...+...+.++|+|+.|+...+++|++.|+++++++. ..++.|+.+++ |+|...+.+++..| T Consensus 84 ~~~~~~~~~~~~~ri~~n~~k~Ivd~~~~yl~G~p~~~~~~d~-----------~~~~~l~~~~~-n~~~~~~~~~~~~a 151 (492) T protein:vir:94 84 DATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHTDD-----------EVVKRIDEVLG-NRFDDKLHSVLTGA 151 (492) T ss_pred cccccccccccccccccchHHHHHHHHHhhhcccCceeccCch-----------HHHHHHHHHHh-ccHHHHHHHHHHHH Confidence 1 1122234578899999999999999999999987653 45677888875 67999999999999 Q ss_pred HhhCCEEEEEEEe-CCeeEEEEEcCCeEEEEEEcCC-ceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEE Q lcl|Aclame:pro 137 FALGGLTVRPYVD-NGEIEFSWALANAFYPLRSNSN-GISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVIT 214 (517) Q Consensus 137 ~~~G~~~~k~~~d-~g~~~i~~v~a~~~~P~~~~~~-~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~ 214 (517) +.+|.+|+.+|+| +|++++.+++|.+++|++.+.. +...+++.++.. .. . +.+|.|+...+ . T Consensus 152 ~~~G~a~~~v~~d~dg~~~~~~~~p~~~~~v~d~~~~~~~~a~ir~~~~--~~-~----~~~~~y~~~~v---------~ 215 (492) T protein:vir:94 152 SNKGIEWLHPYLDEEGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKL--EN-E----TKVEYWDKVTV---------N 215 (492) T ss_pred hhCCeEEEEEEecCCCceEEEEEcccceEEEEcCCCCCceEEEEEEEee--cc-c----eeEEEEecCeE---------E Confidence 9999999999998 6899999999999999865432 333333332221 11 1 12345443321 1 Q ss_pred EEEeecCCccccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 215 NELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWW 294 (517) Q Consensus 215 n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~ 294 (517) +..+..+. .+. ...............++++.+|+++|+|+ +.|+|+|++++++||++|.++|++++ T Consensus 216 ~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~g~vPvv~~~nn---------~~~~sd~e~v~~liDa~d~~~S~~~~ 281 (492) T protein:vir:94 216 YYVYENGS--LIP---DYSNNLENSKTHFSTGSWGKIPFIPFKNN---------DLEISDIFMYKTLIDAYNRRLSDLSN 281 (492) T ss_pred EEEEecCe--eee---ccccccccccccccccCCCccceEEecCC---------CCCCCchHHHHHHHHHHHHHHHHHHH Confidence 11111110 000 00000111122234467888889988752 46999999999999999999999999 Q ss_pred HHHhccceeecchHHhccCCCCcccccCccCCcccceeeeecCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCC Q lcl|Aclame:pro 295 EIKMGQRTVFVSDVMLRTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLS 374 (517) Q Consensus 295 e~~~~~~~i~v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s 374 (517) .++.....+++..++ .... ...+..+...+..+..+ +++.++.++++++.++....++.+.+.|...++.+ T Consensus 282 ~~~~~~~p~lv~~g~----~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p 352 (492) T protein:vir:94 282 TFKDSNELTYVLKNY----DDQE----LPEFKRLLRYYGAIKVS-DNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAV 352 (492) T ss_pred HHHHhcCceeeeecC----Cccc----chhhHHHHhhccceecC-CCCcceeEeccCCHHHHHHHHHHHHHHHHHHhCCc Confidence 998665555552222 1111 11133344445555554 34568889999999988888888888777766543 Q ss_pred ccccccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHH Q lcl|Aclame:pro 375 VGTFSFDGRSMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSA 454 (517) Q Consensus 375 ~~~~~~~~~~~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~ 454 (517) .-+++ ..++..||.+++++.+.+..+++.+++.|+.+|+++++.|+.+... ..+..+|.|+|++++|.|..+ T Consensus 353 ~~~~~-~~~~n~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~~~~-------~~~~~~i~v~f~~~~p~~~~e 424 (492) T protein:vir:94 353 DFSSD-KFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDI-------KGEHKDVDISFNYNKVANTEL 424 (492) T ss_pred CCCcc-ccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CcccceeeEEecCCCCCCHHH Confidence 22221 1235568899999999999999999999999999999999876432 224467899999999999999 Q ss_pred HHHHHHHHHhcCCCCHHHHHHhhCCCCHHHHHHHHHHHHHhccccCC---CCCccccCCCCC--CC----CC Q lcl|Aclame:pro 455 LLRFYGQAKTFGFIPTVEAIQRIFKVPKKTAEQWLEEIRKDQIELDP---VTISQRAQKRMF--GD----EE 517 (517) Q Consensus 455 ~~~~~~~~~~~G~~S~~~~l~~~~~~~eeea~~el~~i~~E~~~~~~---~~~~~~~~~~~~--G~----ee 517 (517) .++.+.+++ |++|.++++..++++++ +++|++||++|+.+... ...+..++.+.. +. .| T Consensus 425 ~~~~~~kl~--giiS~et~~~~l~~v~d--~~~E~eri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e 492 (492) T protein:vir:94 425 QVQTAQQSM--GIVSHETVLENHPFVED--LQAELERIEQEQMEYNKQLPNLDDGGADSAQQQERSNNKESE 492 (492) T ss_pred HHHHHHHHh--ccCchHHHHHhCCCCCC--HHHHHHHHHHHHHHHHhhccccccccCCCCccccCCccccCC Confidence 999888875 99999999876654544 67899999887643211 111111111111 11 11 No 46 >protein:vir:733 Length: 453 # NCBI annotation: minor structural protein 1 # Family: family:all:125 # MgeID: mge:14 # MgeName: Tuc2009 # Cross-refs: genbank:acc:NP_108710;genbank:gi:13487832;genbank:GeneID:920851 Probab=100.00 E-value=9.5e-50 Score=289.34 Aligned_cols=440 Identities=11% Similarity=-0.000 Sum_probs=287.6 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccChHHHHH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLRKLSA 80 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~~~i~ 80 (517) |.|. .+|-+......-+..+.|..+.. --.....++.++++||.|+++.+. +......+...+.++|+|+.|+ T Consensus 1 ~~~~-~~~~~~~~~~~~~~~~~i~~~i~-----~~~~~~~r~~~~~~yy~g~~~i~~-~~~~~~~~~~~ki~~n~~~~iv 73 (453) T protein:vir:73 1 MNLK-PIKLMTYSRDEEITDKVVNDFMK-----KHQEEVERYEYLGNMYKGIMEISS-QKAKDSWKPDNRLTNNFAKYIV 73 (453) T ss_pred Cccc-cceeeeccccccCCHHHHHHHHH-----HHHHHHHHHHHHHHHhccccchhc-CCCCCccCccceeecchHHHHH Confidence 3332 11111111000000001111100 012234577888999999986554 3333333445578899999999 Q ss_pred HHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe-CCeeEEEEEc Q lcl|Aclame:pro 81 DVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD-NGEIEFSWAL 159 (517) Q Consensus 81 ~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d-~g~~~i~~v~ 159 (517) ...+++|++++++++.++. ..++.|+.++++|+|...+.++++.++++|.+|+++|+| +|.+++.+++ T Consensus 74 d~~~~~l~g~~~~~~~~d~-----------~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~ 142 (453) T protein:vir:73 74 DTFVGYFNGIPIKKTHDDK-----------SVLEAMQLFDNLNDMEDEESELAKIACVYGRAYELMYQNESTESEVIYCS 142 (453) T ss_pred HHhhhhhcccCceeecCCh-----------HHHHHHHHHHHhcChhHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEEc Confidence 9999999999999987542 456789999999999999999999999999999999997 6889999999 Q ss_pred CCeEEEEEEcCCc-eEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccccCC Q lcl|Aclame:pro 160 ANAFYPLRSNSNG-ISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEG 238 (517) Q Consensus 160 a~~~~P~~~~~~~-~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~ 238 (517) |.+++|++.+..+ ...+++.++ . ..++ . +..+.++.+. .|+ |...... .. T Consensus 143 p~~~~~v~dd~~~~~~~~~i~~~-~--~~~~-~--~~~~vyt~~~------i~~-----~~~~~~~-----~~------- 193 (453) T protein:vir:73 143 PLNVFMVYDDSIKQKPLFAVYYG-F--DEEG-N--LSGTVYTLLE------TIS-----ITGKAGE-----VK------- 193 (453) T ss_pred ccceEEEEeCCCCceeEEEEEEE-E--ecCc-e--EEEEEEeCCe------EEE-----EEecCCc-----eE------- Confidence 9999999766544 333333322 1 2222 2 2245554321 111 2211110 00 Q ss_pred CCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhc-cceeecchHHhccCCCCc Q lcl|Aclame:pro 239 MQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMG-QRTVFVSDVMLRTVPDES 317 (517) Q Consensus 239 l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~-~~~i~v~~~~l~~~~~~~ 317 (517) + ....-++++++|+++|++ .+.|.|+|++++++||++|.++|++++.++.. .+..++...-+. +... T Consensus 194 ~-~~~~~~~~g~vPvv~~~n---------~~~g~s~~~~v~~liDa~~~~~S~~~~~~~~~~~~~l~~~g~~~~-~~~~- 261 (453) T protein:vir:73 194 F-GESTYNVYSDLPIVEYNF---------NEERQSIFEPVHSLINSYNKVTSEKANDVEYFSDQYLVFLGAEVD-EEDA- 261 (453) T ss_pred E-ccceeccCCceeEEEecC---------CCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCCC-chhh- Confidence 0 011235677888888864 25799999999999999999999999999644 444443110000 0000 Q ss_pred ccccCccCCcccceeeeec------CCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHH Q lcl|Aclame:pro 318 GMPPPQVFDPDVNVYKSIR------MGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEI 391 (517) Q Consensus 318 ~~~~~~~fd~~~~~y~~~~------~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei 391 (517) ..+......+.... ....+..++++++++..+.+...++.+.+.|...++.. .++++..|..||.++ T Consensus 262 -----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p--~~~~~~~gn~Sg~Al 334 (453) T protein:vir:73 262 -----KNIKDNRLINFFDKNSNGQGTNAAKVDVKFLDKPDSDVQTENLLNRLERSIFQFTMAA--NISDENFGNSSGVAL 334 (453) T ss_pred -----hcccccccccccccccccccccccCceeEEeeecCCHHHHHHHHHHHHHHHHHHhCCc--ccCcccccCccHHHH Confidence 01111111111110 11122347889999999999999999988887777554 245555577899999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCCHH Q lcl|Aclame:pro 392 VSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTV 471 (517) Q Consensus 392 ~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~ 471 (517) +++.+.+.+++..+++.|+.+|+++++.|+.+.... +.......|+|.|+++++.|..+.++.+++++ |++|.+ T Consensus 335 ~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~----~~~~~~~~i~v~f~~~~p~~~~~~a~~~~k~~--giis~e 408 (453) T protein:vir:73 335 AYKLQAMSNLALSFQRKFQSALNRRYSLWSSLSTNA----SNKDAWKDIEYTFTRNEPKDIKEQAETANILK--GITSEE 408 (453) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----CCccccccceEEeCCCCCCCHHHHHHHHHHHh--ccCcHH Confidence 999999999999999999999999999998875432 23334457899999999999999999988876 899999 Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 472 EAIQRIFKVPKKTAEQWLEEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 472 ~~l~~~~~~~eeea~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) |++..++++++ +++|++||++|+.+........ .....+.+ T Consensus 409 t~~~~~~~~~d--~~~E~~ri~~E~~~~~~~~~~~---~~~~~~~~ 449 (453) T protein:vir:73 409 TALSVISVIPD--VQAEMEKIKKKKLLQLSLTRTS---NLVRMKQM 449 (453) T ss_pred HHHHhCCCCCC--HHHHHHHHHHHHHHHHHHHHhc---cCCcchhh Confidence 99876655444 6778999988876543322211 11122222 No 47 >protein:vir:94101 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1494 # MgeName: 96 # Cross-refs: genbank:acc:YP_240229;genbank:gi:66395892;genbank:GeneID:5133270 Probab=100.00 E-value=2.4e-49 Score=287.10 Aligned_cols=451 Identities=11% Similarity=0.069 Sum_probs=299.3 Q ss_pred CchHHHHHHHHHHHHHHhhcccchh-hhccccCcCCHHHHHHHHHHHHHhcCCCccccccc----------------ccC Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKS-INDHEKINIDPNELARIERNLRQYEGDYPQVEYIN----------------SQG 63 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~----------------~~~ 63 (517) |.|-+.|...=-+... .+-|+. |..|. ....++.+..+||.|.+....... ... T Consensus 1 ~~~~~~~~~~~~~~~~---~e~i~~~i~~~~------~~~~r~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (474) T protein:vir:94 1 MTLYKLIDDIEAQGIL---PKHIEALIESHK------DDRERMVNLYNRYKTHIDYVPIFKRRPIEEKEDFETGGNVRRL 71 (474) T ss_pred CchHHHHhhccccCCC---HHHHHHHHHHhh------hhhHHHHHHHHHHhhhcchhhhhcchhhhhhhhhhhccccccc Confidence 6555444322110000 001111 11111 234567777889988654221100 011 Q ss_pred ccccccccccChHHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEE Q lcl|Aclame:pro 64 KIQERDYMTLNLRKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLT 143 (517) Q Consensus 64 ~~~~~~~~~ln~~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~ 143 (517) +.+...+.++|+|+.|+...+++|++.|+++++++.. ...+..+++|+.++++|+|.....+++..++++|.+| T Consensus 72 ~~~~~~ki~~n~~~~ivd~~~~yl~g~pv~~~~~~~~------~~~e~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~ 145 (474) T protein:vir:94 72 DVSVNNKLNNSFDSEIVDTRVGYLHGVPVTYDLDENA------EKNEKLKKFITNFAIRNSVDDEDSEIGKMAAICGYGA 145 (474) T ss_pred ccCcccccccchHHHHHHhHhhheeccceeEeeCCCC------cchHHHHHHHHHHHhhcCHhHHHHHHHHHHhhcCeEE Confidence 1122346789999999999999999999999986532 2345678899999999999999999999999999999 Q ss_pred EEEEEe-CCeeEEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCC Q lcl|Aclame:pro 144 VRPYVD-NGEIEFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDN 222 (517) Q Consensus 144 ~k~~~d-~g~~~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~ 222 (517) ..+|.| +|++++.+++|.+++|++.+++....++ .++.. ..+.+...+.++++++... .| .|...+ T Consensus 146 ~~~~~d~~~~~~~~~i~p~~~~~v~d~~~~~~~~i-~~~~~-~~~~~~~~~~~~~~y~~~~------~~-----~~~~~~ 212 (474) T protein:vir:94 146 RLAYIDTNGDIRIKNIDPYNVIFVGDNILEPTYSL-RYFYE-KDDDNGTDYVYAEFYDNAY------YY-----VFRGEG 212 (474) T ss_pred EEEEeCCCCeeEEEEEcccceEEEEcCCCceEEEE-EEEEE-eeCCCceEEEEEEEEcCce------EE-----EEeecC Confidence 999998 5889999999999999976655554433 33322 2333445556677765432 11 243322 Q ss_pred ccccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccce Q lcl|Aclame:pro 223 EGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRT 302 (517) Q Consensus 223 ~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~ 302 (517) .+ . +. .....-++++++||+.|+| .+.|.|+|++++++||++|..+|++.+.++..... T Consensus 213 ~~---~-------~~--~~~~~~~~~g~vPvv~~~n---------~~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~ 271 (474) T protein:vir:94 213 ID---A-------LQ--EVGRYEHLFDYNPLFGVPN---------NKEMIGDAEKVIHLIDAYDLTMSDASSEISQTRLA 271 (474) T ss_pred CC---c-------cc--ccccccCCCCccceEEecC---------CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcc Confidence 21 1 00 0112346778888988864 25699999999999999999999999999755444 Q ss_pred eecchHHhccCCCCcccccCccCCcccceeeeecCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCC Q lcl|Aclame:pro 303 VFVSDVMLRTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDG 382 (517) Q Consensus 303 i~v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~ 382 (517) +++-..+ ..+.. +..+......+...++++.++.++++++++++...++.+.+.|...++.+.-+++ .. T Consensus 272 ~l~i~g~---~~~~~-------~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~-~~ 340 (474) T protein:vir:94 272 YLVLRGM---GMSEE-------MIQETQKSGAFELFDKDMDVKYLTKDVNDTMIENHLDRIEKNIMRFAKSVNFNSD-EF 340 (474) T ss_pred hhhhccC---CCCch-------hhhhhhhcceeEecCCCCceeEEeccCCHHHHHHHHHHHHHHHHHHhCCcccccc-cc Confidence 4441111 11111 1112222334444455667999999999999999999998888777765433322 12 Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHH Q lcl|Aclame:pro 383 RSMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQA 462 (517) Q Consensus 383 ~~~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~ 462 (517) +|..||.+++++.+.+.++++.+++.|+.+|+++++.|+.+..... .+.......+|++.|+++++.|..+.++.++++ T Consensus 341 ~~n~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~l~~~~-~~~~~~~~~~i~~~f~~~~p~d~~e~a~~~~kl 419 (474) T protein:vir:94 341 NGNVPIIGMKLKLMALENKCMTFERKMTAMLRYQFKVILSALKRKG-YNLDDDSYLNLIFKFTRNIPVNKLEESQVLINL 419 (474) T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCccccccceEEeCCCCCCCHHHHHHHHHHH Confidence 3677999999999999999999999999999999999998765421 111222335689999999999999999999887 Q ss_pred HhcCCCCHHHHHHhhCCCCHHHHHHHHHHHHHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 463 KTFGFIPTVEAIQRIFKVPKKTAEQWLEEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 463 ~~~G~~S~~~~l~~~~~~~eeea~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) + |++|.+|++.++...++ +++|++||++|+.+......+. ...+.++++| T Consensus 420 ~--g~iS~et~~~~l~~v~d--~~~E~eri~~E~~e~~~~~~~~-~~~~~~~~~~ 469 (474) T protein:vir:94 420 K--GQVSERTRLGQSQLVDD--VDYELDEMEKESLEFNDKLPDI-DEGDANDKSQ 469 (474) T ss_pred h--ccCchHHHHHhCCCCCC--HHHHHHHHHHHHHHHHhhcccc-cCCCcCCCCc Confidence 4 99999999877644443 7889999998875432211111 1111222222 No 48 >protein:vir:105889 Length: 474 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1514 # MgeName: phiETA3 # Cross-refs: genbank:acc:YP_001004371;genbank:gi:122891826;genbank:GeneID:4712360 Probab=100.00 E-value=2.4e-49 Score=287.10 Aligned_cols=451 Identities=11% Similarity=0.069 Sum_probs=299.3 Q ss_pred CchHHHHHHHHHHHHHHhhcccchh-hhccccCcCCHHHHHHHHHHHHHhcCCCccccccc----------------ccC Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKS-INDHEKINIDPNELARIERNLRQYEGDYPQVEYIN----------------SQG 63 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~----------------~~~ 63 (517) |.|-+.|...=-+... .+-|+. |..|. ....++.+..+||.|.+....... ... T Consensus 1 ~~~~~~~~~~~~~~~~---~e~i~~~i~~~~------~~~~r~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (474) T protein:vir:10 1 MTLYKLIDDIEAQGIL---PKHIEALIESHK------DDRERMVNLYNRYKTHIDYVPIFKRRPIEEKEDFETGGNVRRL 71 (474) T ss_pred CchHHHHhhccccCCC---HHHHHHHHHHhh------hhhHHHHHHHHHHhhhcchhhhhcchhhhhhhhhhhccccccc Confidence 6555444322110000 001111 11111 234567777889988654221100 011 Q ss_pred ccccccccccChHHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEE Q lcl|Aclame:pro 64 KIQERDYMTLNLRKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLT 143 (517) Q Consensus 64 ~~~~~~~~~ln~~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~ 143 (517) +.+...+.++|+|+.|+...+++|++.|+++++++.. ...+..+++|+.++++|+|.....+++..++++|.+| T Consensus 72 ~~~~~~ki~~n~~~~ivd~~~~yl~g~pv~~~~~~~~------~~~e~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~ 145 (474) T protein:vir:10 72 DVSVNNKLNNSFDSEIVDTRVGYLHGVPVTYDLDENA------EKNEKLKKFITNFAIRNSVDDEDSEIGKMAAICGYGA 145 (474) T ss_pred ccCcccccccchHHHHHHhHhhheeccceeEeeCCCC------cchHHHHHHHHHHHhhcCHhHHHHHHHHHHhhcCeEE Confidence 1122346789999999999999999999999986532 2345678899999999999999999999999999999 Q ss_pred EEEEEe-CCeeEEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCC Q lcl|Aclame:pro 144 VRPYVD-NGEIEFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDN 222 (517) Q Consensus 144 ~k~~~d-~g~~~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~ 222 (517) ..+|.| +|++++.+++|.+++|++.+++....++ .++.. ..+.+...+.++++++... .| .|...+ T Consensus 146 ~~~~~d~~~~~~~~~i~p~~~~~v~d~~~~~~~~i-~~~~~-~~~~~~~~~~~~~~y~~~~------~~-----~~~~~~ 212 (474) T protein:vir:10 146 RLAYIDTNGDIRIKNIDPYNVIFVGDNILEPTYSL-RYFYE-KDDDNGTDYVYAEFYDNAY------YY-----VFRGEG 212 (474) T ss_pred EEEEeCCCCeeEEEEEcccceEEEEcCCCceEEEE-EEEEE-eeCCCceEEEEEEEEcCce------EE-----EEeecC Confidence 999998 5889999999999999976655554433 33322 2333445556677765432 11 243322 Q ss_pred ccccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccce Q lcl|Aclame:pro 223 EGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRT 302 (517) Q Consensus 223 ~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~ 302 (517) .+ . +. .....-++++++||+.|+| .+.|.|+|++++++||++|..+|++.+.++..... T Consensus 213 ~~---~-------~~--~~~~~~~~~g~vPvv~~~n---------~~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~ 271 (474) T protein:vir:10 213 ID---A-------LQ--EVGRYEHLFDYNPLFGVPN---------NKEMIGDAEKVIHLIDAYDLTMSDASSEISQTRLA 271 (474) T ss_pred CC---c-------cc--ccccccCCCCccceEEecC---------CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcc Confidence 21 1 00 0112346778888988864 25699999999999999999999999999755444 Q ss_pred eecchHHhccCCCCcccccCccCCcccceeeeecCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCC Q lcl|Aclame:pro 303 VFVSDVMLRTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDG 382 (517) Q Consensus 303 i~v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~ 382 (517) +++-..+ ..+.. +..+......+...++++.++.++++++++++...++.+.+.|...++.+.-+++ .. T Consensus 272 ~l~i~g~---~~~~~-------~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~-~~ 340 (474) T protein:vir:10 272 YLVLRGM---GMSEE-------MIQETQKSGAFELFDKDMDVKYLTKDVNDTMIENHLDRIEKNIMRFAKSVNFNSD-EF 340 (474) T ss_pred hhhhccC---CCCch-------hhhhhhhcceeEecCCCCceeEEeccCCHHHHHHHHHHHHHHHHHHhCCcccccc-cc Confidence 4441111 11111 1112222334444455667999999999999999999998888777765433322 12 Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHH Q lcl|Aclame:pro 383 RSMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQA 462 (517) Q Consensus 383 ~~~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~ 462 (517) +|..||.+++++.+.+.++++.+++.|+.+|+++++.|+.+..... .+.......+|++.|+++++.|..+.++.++++ T Consensus 341 ~~n~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~l~~~~-~~~~~~~~~~i~~~f~~~~p~d~~e~a~~~~kl 419 (474) T protein:vir:10 341 NGNVPIIGMKLKLMALENKCMTFERKMTAMLRYQFKVILSALKRKG-YNLDDDSYLNLIFKFTRNIPVNKLEESQVLINL 419 (474) T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCccccccceEEeCCCCCCCHHHHHHHHHHH Confidence 3677999999999999999999999999999999999998765421 111222335689999999999999999999887 Q ss_pred HhcCCCCHHHHHHhhCCCCHHHHHHHHHHHHHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 463 KTFGFIPTVEAIQRIFKVPKKTAEQWLEEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 463 ~~~G~~S~~~~l~~~~~~~eeea~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) + |++|.+|++.++...++ +++|++||++|+.+......+. ...+.++++| T Consensus 420 ~--g~iS~et~~~~l~~v~d--~~~E~eri~~E~~e~~~~~~~~-~~~~~~~~~~ 469 (474) T protein:vir:10 420 K--GQVSERTRLGQSQLVDD--VDYELDEMEKESLEFNDKLPDI-DEGDANDKSQ 469 (474) T ss_pred h--ccCchHHHHHhCCCCCC--HHHHHHHHHHHHHHHHhhcccc-cCCCcCCCCc Confidence 4 99999999877644443 7889999998875432211111 1111222222 No 49 >protein:vir:97336 Length: 492 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1666 # MgeName: 52A # Cross-refs: genbank:acc:YP_240606;genbank:gi:66396273;genbank:GeneID:5133692 Probab=100.00 E-value=3.4e-49 Score=286.33 Aligned_cols=454 Identities=15% Similarity=0.139 Sum_probs=298.4 Q ss_pred CchHHHHHHHHHHHHHHhhcc--cchhhhcc-----ccCcCCH-----------HHHHHHHHHHHHhcCCCccccccc-c Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQ--TLKSINDH-----EKINIDP-----------NELARIERNLRQYEGDYPQVEYIN-S 61 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~--~~~~~~~~-----~~i~~~~-----------~~~~~i~~~~~~Y~g~~~~~~~~~-~ 61 (517) ..+|..+-..+-|+|+.+... +...+..+ .+..... +...++.++.+||.|+++.++... . T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~r~~~l~~YY~g~~~i~~~~~~~ 83 (492) T protein:vir:97 4 IQLISQVAQALIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPV 83 (492) T ss_pred HHHHHHHHHHHhcCCceeeccchhhhhHhhhcccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccccc Confidence 888888888777777665542 11111100 0111111 134556677889999986543221 1 Q ss_pred c-----CccccccccccChHHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHH Q lcl|Aclame:pro 62 Q-----GKIQERDYMTLNLRKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPT 136 (517) Q Consensus 62 ~-----~~~~~~~~~~ln~~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a 136 (517) . ...+.+.+.++|+|+.|+...+++|++.|++++.++. ..++.|+.+++ |+|...+.+++..+ T Consensus 84 ~~~~~~~~~~~~~ri~~n~~k~Ivd~~~~yl~g~p~~~~~~d~-----------~~~~~l~~~~~-n~~~~~~~~~~~~~ 151 (492) T protein:vir:97 84 DATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHTDD-----------EVVKRIDEVLG-NRFDDKLHSVLTGA 151 (492) T ss_pred cccccccccccccccccchHHHHHHHHhhhhcccCceeccCch-----------HHHHHHHHHHh-ccHHHHHHHHHHHH Confidence 1 1122334678899999999999999999999987653 35677888875 68999999999999 Q ss_pred HhhCCEEEEEEEe-CCeeEEEEEcCCeEEEEEEcC-CceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEE Q lcl|Aclame:pro 137 FALGGLTVRPYVD-NGEIEFSWALANAFYPLRSNS-NGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVIT 214 (517) Q Consensus 137 ~~~G~~~~k~~~d-~g~~~i~~v~a~~~~P~~~~~-~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~ 214 (517) +.+|.+|+.+|.| +|.+++.+++|.+++|++.+. .+...+++.++.. .+ . +.+|+|+...+ . T Consensus 152 ~~~G~a~~~v~~d~dg~~~~~~~~p~~~~~i~d~~~~~~~~~~vr~~~~--~~-~----~~~~~y~~~~v---------~ 215 (492) T protein:vir:97 152 SNKGIEWLHPYLDEEGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKL--EN-E----TKVEYWDKVTV---------N 215 (492) T ss_pred hhcCeEEEEEEecCCCceEEEEEcccceEEEEcCCCCCceEEEEEEEee--cc-c----eeEEEEecCeE---------E Confidence 9999999999998 688999999999999986643 2334343332221 11 1 12355544321 1 Q ss_pred EEEeecCCccccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 215 NELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWW 294 (517) Q Consensus 215 n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~ 294 (517) +..+..+.. ... ..............++++.+|+++|+++ +.|+|+|++++++||++|.++|++++ T Consensus 216 ~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~g~vPvv~~~nn---------~~g~sd~e~v~~liDa~d~~~S~~~~ 281 (492) T protein:vir:97 216 YYVYENGSL--IPD---YSNNLENSKTHFSTGSWGKIPFIPFKNN---------DLEISDIFMYKTLIDAYNRRLSDLSN 281 (492) T ss_pred EEEEecCee--eec---ccccccccccccccCCCCCcceEEecCC---------CCCCCchHhHHHHHHHHHHHHHHHHH Confidence 111111100 000 0000111122334567888899999752 46999999999999999999999999 Q ss_pred HHHhccceeecchHHhccCCCCcccccCccCCcccceeeeecCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCC Q lcl|Aclame:pro 295 EIKMGQRTVFVSDVMLRTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLS 374 (517) Q Consensus 295 e~~~~~~~i~v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s 374 (517) .++....++.+..++ .... ...|..+...+..+..+ +++.++.++++++++++...++.+.+.|...++.+ T Consensus 282 ~~~~~~~~~l~~~g~----~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~L~~~I~~~s~~p 352 (492) T protein:vir:97 282 TFKDSNELTYVLKNY----DDQE----LPEFKRLLRYYGAIKVS-DNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAV 352 (492) T ss_pred HHHHhccceeeeecC----Cccc----chhHHHHHhhccceecC-CCCcceeEeccCCHHHHHHHHHHHHHHHHHHhCCC Confidence 998766666663322 1111 11133333444555544 34468889999999999999999888887777654 Q ss_pred ccccccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHH Q lcl|Aclame:pro 375 VGTFSFDGRSMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSA 454 (517) Q Consensus 375 ~~~~~~~~~~~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~ 454 (517) .-+++ ..++..||.+++++.+.+..+++.+++.|+.+|.++++.|+.+... .....++.|.|++.+|.|..+ T Consensus 353 ~~~~~-~~~~n~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~li~~~~~~-------~~~~~~i~v~f~~~~p~~~~e 424 (492) T protein:vir:97 353 DFSSD-KFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDI-------KGEHKDVDISFNYNKVANTEL 424 (492) T ss_pred CCCcc-ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CcccceeeEEecCCCCCCHHH Confidence 32221 1235678999999999999999999999999999999998876532 234567999999999999999 Q ss_pred HHHHHHHHHhcCCCCHHHHHHhhCCCCHHHHHHHHHHHHHhcccc---CCCCCccccCCCCC------CCCC Q lcl|Aclame:pro 455 LLRFYGQAKTFGFIPTVEAIQRIFKVPKKTAEQWLEEIRKDQIEL---DPVTISQRAQKRMF------GDEE 517 (517) Q Consensus 455 ~~~~~~~~~~~G~~S~~~~l~~~~~~~eeea~~el~~i~~E~~~~---~~~~~~~~~~~~~~------G~ee 517 (517) .++.++++ +|++|.+|++.+++.+++ +++|++||++|+.+. .+...+...+.+.. ..+| T Consensus 425 ~a~~~~kl--~G~iS~et~l~~l~~v~d--~~~Eleri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 492 (492) T protein:vir:97 425 QVQTAQQS--MGIVSHETVLENHPFVED--LQAELERIEQEQTEYNKQLPNLDDGGADSAQQQERSNNKESE 492 (492) T ss_pred HHHHHHHH--hccCchHHHHHhCCCCCC--HHHHHHHHHHHHHHHHHhhhccccCCCCCCcccccccccccC Confidence 99998887 499999999887755554 677999998876432 11111111111111 1111 No 50 >protein:vir:102330 Length: 451 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1566 # MgeName: phi CD119 # Cross-refs: genbank:acc:YP_529555;genbank:gi:90592641;genbank:GeneID:3974462 Probab=100.00 E-value=4.1e-48 Score=280.39 Aligned_cols=428 Identities=13% Similarity=0.083 Sum_probs=289.7 Q ss_pred hhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCccccccc-cc-----CccccccccccChHHHHHHHHhhhhcCCc Q lcl|Aclame:pro 18 LSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYIN-SQ-----GKIQERDYMTLNLRKLSADVLSGLVFNEQ 91 (517) Q Consensus 18 ~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~-~~-----~~~~~~~~~~ln~~~~i~~~~A~ll~~e~ 91 (517) +..+.|.++..+ -.....++.+.++||.|+++-++... .. ...+...+.+.|+++.|+...+.+||+.| T Consensus 1 l~~~~i~~~i~~-----~~~~~~r~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~ki~~n~~~~Ivd~~~~yl~G~p 75 (451) T protein:vir:10 1 MELEKIRAIISA-----DAARRQEILQAKSYYYNKNDILKKGVVVQNRDENPLRNADNRISHNFHEILVDEKASYMFTYP 75 (451) T ss_pred CCHHHHHHHHHH-----HHHHHHHHHHHHHHhcccCccccccccccccccccccccccccccchHHHHHHhhhhheeccc Confidence 222233222111 11245678899999999976543221 11 11122336778999999999999999999 Q ss_pred ceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeC---------CeeEEEEEcCCe Q lcl|Aclame:pro 92 CEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDN---------GEIEFSWALANA 162 (517) Q Consensus 92 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~---------g~~~i~~v~a~~ 162 (517) ++|++++. +...+.|+.+++ |+|.....+++..++.+|.+|..+|+|. |++++..++|.+ T Consensus 76 ~~~~~~~~----------~~~~~~~~~~~~-n~~~~~~~~~~~~~~~~G~a~~~~y~de~~~~~~~~~~~~~~~~i~p~~ 144 (451) T protein:vir:10 76 VLFDIDNN----------KELNEKVTDVLG-NEFTRKAKNLAIEASNCGSAWLHYWIDEEYSGEQVTNQTFKYGVVNTEE 144 (451) T ss_pred ceeecCCc----------HHHHHHHHHHhc-cCHHHHHHHHHHHHhhcCeEEEEEeecCCcccccccccceeEEEEcccc Confidence 99987653 234566777665 7899999999999999999999999983 678899999999 Q ss_pred EEEEEEcCC-ceEEEEEEEEEEEEecCC---cEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccccCC Q lcl|Aclame:pro 163 FYPLRSNSN-GISEGVMKSVTTKVIGNK---TVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEG 238 (517) Q Consensus 163 ~~P~~~~~~-~~~~~a~~~~~~~~~~~~---~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~ 238 (517) ++|++.+.. +...+++.++.......+ .+.++++|.|+... .|+ |...+....|..+ T Consensus 145 ~~~vydd~~~~~~~~~ir~~~~~~~~~~~~~~~~~~~~e~yt~~~------~~~-----~~~~~~~~~~~~~-------- 205 (451) T protein:vir:10 145 IIPIYRNGIERELEAVIRYYIQLEDVKGQIQKQAYTYVEFWTDKI------LDK-----YKFFGVSCCGSQI-------- 205 (451) T ss_pred eEEEEcCCCCCceEEEEEEEEeeecccccccceEEEEEEEEeCCe------EEE-----EEecccCcccccc-------- Confidence 999976543 344444444333222221 23355667766542 111 2222222222221 Q ss_pred CCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeecchHHhccCCCCcc Q lcl|Aclame:pro 239 MQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRTVFVSDVMLRTVPDESG 318 (517) Q Consensus 239 l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~l~~~~~~~~ 318 (517) .....-+++++.||++|+++ ..|.|+|+++++|||++|.++|++++.++.....+.+-..+ + T Consensus 206 -~~~~~~~~~g~vPvv~~~nn---------~~~~~d~e~v~~liDa~~~~~S~~~~~~~~~~~~~l~~~g~--------~ 267 (451) T protein:vir:10 206 -EHITVQHRFNSVPFVEFSNN---------IKKQSDLSKYKKILDLYDRVMSGFANDLEDIQQIIYILENF--------G 267 (451) T ss_pred -ccccccCCCCeeeEEEeccC---------CCCCCchhhHHHHHHHHHHHHHHHHHHHHHhccceeeeecC--------C Confidence 12223478899999999752 35899999999999999999999999997555555552221 1 Q ss_pred cccCccCCcccceeeeec----CCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHHHHH Q lcl|Aclame:pro 319 MPPPQVFDPDVNVYKSIR----MGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVSE 394 (517) Q Consensus 319 ~~~~~~fd~~~~~y~~~~----~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a~ 394 (517) ......+..+.+.+..+. ....++.++.++++++.+++...++.+.+.|...++.+. +++...|..||.+++++ T Consensus 268 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~--~~~~~~gn~Sg~Alk~~ 345 (451) T protein:vir:10 268 GEDTSEFLKELKRYKTIKTETDSEGDSGGLKTMQIEIPTEARKIILEILKKQIYESGQGLQ--QDTENFGNASGVALKFF 345 (451) T ss_pred cccchhhHHHHhhCCeEEecCcCCccCCcceEEeecCCHHHHHHHHHHHHHHHHHHhCccc--ccccccccccHHHHHHH Confidence 000011222222222222 223456799999999999999999999999888876653 34445567889999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCCHHHHH Q lcl|Aclame:pro 395 NDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTVEAI 474 (517) Q Consensus 395 ~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~~~l 474 (517) .+.+.++++.+++.|+.+|+++++.|+.+.... +...|.|.|++++|.|..+.++.+++++ |+||.+|++ T Consensus 346 ~~~l~~k~~~k~~~f~~~l~~~~~li~~~~~~~--------d~~~i~i~f~~~~p~n~~e~~~~~~kl~--g~iS~et~~ 415 (451) T protein:vir:10 346 YRKLELKSGLLETEFRTSFDKLIKAILYFLGVT--------DYKKIQQTYTRNMMSNDLEDADIATKSV--GIIPTKIIL 415 (451) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--------CccceeEEecCCCCCCHHHHHHHHHHHh--ccCchHHHH Confidence 999999999999999999999999999875321 3456899999999999999999888875 999999998 Q ss_pred HhhCCCCHHHHHHHHHHHHHhccccCCCCCccccCCCCCCC Q lcl|Aclame:pro 475 QRIFKVPKKTAEQWLEEIRKDQIELDPVTISQRAQKRMFGD 515 (517) Q Consensus 475 ~~~~~~~eeea~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ 515 (517) +.+..+++ +++|++++++|+.++.....+ .-+..|| T Consensus 416 ~~~p~v~d--~~~e~~~~~ee~~~~~~~~~~---~~~~~~~ 451 (451) T protein:vir:10 416 RHHPWVDD--VEEAEKLYLEEKKIQASKVSD---DYNNFTE 451 (451) T ss_pred HhCCCCCC--HHHHHHHHHHHHHHHHHHHHh---hcCCCCC Confidence 76644443 567778887665433221111 1112233 No 51 >protein:vir:78537 Length: 480 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:1853 # MgeName: U2 # Cross-refs: genbank:acc:YP_001491582;genbank:gi:157786405;genbank:GeneID:5625689 Probab=100.00 E-value=1.7e-43 Score=255.02 Aligned_cols=442 Identities=10% Similarity=-0.003 Sum_probs=285.4 Q ss_pred CchHH-HHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccC-ccccccccccChHHH Q lcl|Aclame:pro 1 MKVIQ-RIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQG-KIQERDYMTLNLRKL 78 (517) Q Consensus 1 m~~~~-~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~-~~~~~~~~~ln~~~~ 78 (517) |.-=. .|+.++++. .....++.+..+||.|+++ +.+....- ...++.+..+|+|+. T Consensus 1 ~~t~~d~i~~L~~~~---------------------~~~~~r~~~~~~Yy~G~~~-i~~~~~~~~~~~~~~~~~~n~~~~ 58 (480) T protein:vir:78 1 MTTYHEHVERLQGLL---------------------ARDLPNLLEAEAYRNGTRR-LKTIGIGAPPELAYLDVQPGWVAT 58 (480) T ss_pred CCCHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHhcccc-chhcccccchhhhhhhhhcchHHH Confidence 43321 122222211 1234577888899999975 33322211 112233466899999 Q ss_pred HHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEE------e-CC Q lcl|Aclame:pro 79 SADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYV------D-NG 151 (517) Q Consensus 79 i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~------d-~g 151 (517) |+..+|++|+.. .+++++. +..++.|+++++.|+|...+.+++..++.+|.+|+.+|- | +| T Consensus 59 ivd~~~~~l~~~--g~~~~~d----------~~~~~~l~~i~~~N~~~~~~~~~~~~a~~~G~ay~~v~~~~~~~~d~~~ 126 (480) T protein:vir:78 59 YLRTLSDRLDIE--GFRISED----------SEGLEELWNWWQANDLDEESVLGHDDSLTFGRAYITVSHPDVESGDPAG 126 (480) T ss_pred HHHHHHhhhccC--ceecCCC----------chhHHHHHHHHHhcCHHHHHHHHHHHHhhcCceEEEeecCccccCCCCC Confidence 999999999755 3444321 234577889999999999999999999999999999873 3 57 Q ss_pred eeEEEEEcCCeEEEEEEcC-CceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCccc Q lcl|Aclame:pro 152 EIEFSWALANAFYPLRSNS-NGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRI 230 (517) Q Consensus 152 ~~~i~~v~a~~~~P~~~~~-~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v 230 (517) .++|.+++|.+++|++.+. .+...+++.++. ...+. ..++..+.|+.+.+ ++ |...+....+..+ T Consensus 127 ~~~i~~~~p~~~~~i~D~~~~~~~~~~i~~~~-~~d~~--~~~~~~~~y~~~~~------~~-----~~~~~~~~~~~~~ 192 (480) T protein:vir:78 127 IPLIRVESPLYMYAELDPRNTRRVTRAVRLYT-TRDDV--AVPDRATLYLPDET------VP-----LRRNGGLNDQWVV 192 (480) T ss_pred eeEEEEEcccceEEEEcCCCccceEEEEEEEE-eecCC--cceEEEEEEeCCeE------EE-----EEecCCCcccccc Confidence 8999999999999987544 345555544332 22222 23556777776431 11 2211111111110 Q ss_pred ccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhh-hHHHHHHHHHHHHHHHHHHH-hccceeecchH Q lcl|Aclame:pro 231 PLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDN-SVSTLKKINDTYDQFWWEIK-MGQRTVFVSDV 308 (517) Q Consensus 231 ~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~-~~~lid~lD~~~s~~~~e~~-~~~~~i~v~~~ 308 (517) ..+..-++++++|++.|+ |+.....|+|+|+++. +++|+|++|.++|++++.++ .+-+.+++... T Consensus 193 ---------~~~~~~~~~g~vPvv~f~----n~~~~~~~~G~sdi~~~i~~l~Da~~~~~s~~~~~~~~~a~p~~~i~G~ 259 (480) T protein:vir:78 193 ---------DGDVIKHGLGVVPVVPLT----NDPRLGNRYGRSEISPELRKVTDAASRTLMNLQSASQILGTPLRVISGV 259 (480) T ss_pred ---------cccccccCCCCcceEEee----cccccCCccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhCC Confidence 112334778889998774 7778889999999985 89999999999999999996 45555554210 Q ss_pred HhccCCCCcccccCccCCcccceeeeecCCCCCCcceEEeccc-ChHHHHHHHHHHHHHHHHHhCCCccccccCCCccch Q lcl|Aclame:pro 309 MLRTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHDI-RTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKT 387 (517) Q Consensus 309 ~l~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~di-r~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~T 387 (517) -+....+.++. ..|. .+.......++..+++.+++- ..+.|.+.++.++++|+..+++++..||..+....+ T Consensus 260 ~~~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~p~~~fg~~~~n~~S 332 (480) T protein:vir:78 260 TTDELTNDGEN---TTLD----IYYGRILTLASEAAKISEFKAAELRNFAEEMEVFRKEAASITGLPPQYLSSSSENPAS 332 (480) T ss_pred Ccccccccccc---chhh----hhhhhhccCCCCCceEEecCccCHHHHHHHHHHHHHHHhcccCCCHHHhccccCchhH Confidence 00000011110 0011 111111112223355556443 568899999999999999999999999876656678 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcC- Q lcl|Aclame:pro 388 ATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFG- 466 (517) Q Consensus 388 Atei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G- 466 (517) |.+++++...|.+++..+++.|+.+|.++++.++.+.. +........+.|.|.+..+++..+.++.+.+++++| T Consensus 333 g~Al~~~~~~l~~k~~~~~~~f~~~l~~~~rl~~~~~~-----~~~~~~~~~i~v~w~~~~~~s~~~~ad~~~kl~~~g~ 407 (480) T protein:vir:78 333 AEAIIATDSRIVKMAERKGRIFGGAWERAMRIAMQIMG-----REVTEEYTRLETVWRDPSTPTVAAKADAVSKLYANGQ 407 (480) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCccccceeeeEEecCCCCCCHHHHHHHHHHHHHhcc Confidence 99999999999999999999999999999998876532 112234567999999999999999999999999877 Q ss_pred -CCCHHHHHHhhCCCCHHHHHHHHHHHHHhcccc------CCC---CCccccCCCCCCCCC Q lcl|Aclame:pro 467 -FIPTVEAIQRIFKVPKKTAEQWLEEIRKDQIEL------DPV---TISQRAQKRMFGDEE 517 (517) Q Consensus 467 -~~S~~~~l~~~~~~~eeea~~el~~i~~E~~~~------~~~---~~~~~~~~~~~G~ee 517 (517) ++|.++++. ++|+++++++++ +++++++.+. .+. +..+.......+++| T Consensus 408 ~~~s~et~~~-~lg~~~d~~~e~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (480) T protein:vir:78 408 GPIPKEQARI-DLGYTATQREQM-RDWDKQETEDMIDTLYSTTKAQADATPKPTVTETKTE 466 (480) T ss_pred cCCCHHHHHh-cCCCCHhHHHHH-HHHHHHHHHHHHHHhhccccCCCccccCCCCCCCCCc Confidence 689988665 569998876554 3443333210 111 111111112223444 No 52 >protein:vir:78227 Length: 480 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:1849 # MgeName: Bethlehem # Cross-refs: genbank:acc:YP_001491663;genbank:gi:157786487;genbank:GeneID:5625705 Probab=100.00 E-value=2.3e-43 Score=254.37 Aligned_cols=442 Identities=11% Similarity=0.004 Sum_probs=285.3 Q ss_pred CchHHH-HHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccC-ccccccccccChHHH Q lcl|Aclame:pro 1 MKVIQR-IKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQG-KIQERDYMTLNLRKL 78 (517) Q Consensus 1 m~~~~~-ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~-~~~~~~~~~ln~~~~ 78 (517) |+--+- |+.++++. .....++.+..+||.|+++ +.+....- +.....+..+|+|+. T Consensus 1 ~~t~~~~i~~L~~~~---------------------~~~~~r~~~l~~Yy~G~~~-i~~~~~~~~~~~~~~~~~~n~~~~ 58 (480) T protein:vir:78 1 MTTYHEHVERLQGLL---------------------ARDLPNLLEAEAYRNGTRR-LKTIGIGAPPELAYLDVQPGWVAT 58 (480) T ss_pred CCCHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHhcccc-ccccccccchhHhhhhhhcchHHH Confidence 443321 22222211 1234578888999999975 43332221 112233467899999 Q ss_pred HHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEE------e-CC Q lcl|Aclame:pro 79 SADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYV------D-NG 151 (517) Q Consensus 79 i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~------d-~g 151 (517) |+..++++|+.. .+++++. +..++.|+++++.|+|...+.+++..|+.+|.+|+.+|- | +| T Consensus 59 ivd~~~~~l~~~--g~~~~~d----------~~~~~~l~~i~~~N~~d~~~~~~~~~a~~~G~ay~~v~~~~~~~~d~~g 126 (480) T protein:vir:78 59 YLRTLSDRLDIE--GFRISED----------SEGLEELWNWWQANDLDEESVLGHDDSLTFGRSYITVSHPDVESGDPAG 126 (480) T ss_pred HHHHHHhhhccC--ceecCCC----------chhHHHHHHHHHhcCHHHHHHHHHHHHhhcCceEEEEecCccccCCCCC Confidence 999999998654 3444431 234577889999999999999999999999999999884 3 57 Q ss_pred eeEEEEEcCCeEEEEEEcC-CceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCccc Q lcl|Aclame:pro 152 EIEFSWALANAFYPLRSNS-NGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRI 230 (517) Q Consensus 152 ~~~i~~v~a~~~~P~~~~~-~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v 230 (517) .++|.+++|.+++|++.+. .+...+++.++.. ..+.+ .+++.+.|+.+.+ ++ |...+....+.. T Consensus 127 ~~~i~~~~p~~~~~~~D~~~~~~~~~~i~~~~~-~~~~~--~~~~~~~y~~~~~------~~-----~~~~~~~~~~~~- 191 (480) T protein:vir:78 127 IPLIRVESPLYMYAELDPRNTRRVTRAVRLYTT-RDDVA--VPDRATLYLPDET------VP-----LRRNGGLNDQWV- 191 (480) T ss_pred eeEEEEEcccceEEEEcCCCccceEEEEEEEEe-ecCCC--ceEEEEEEeCCeE------EE-----EEecCCCccccc- Confidence 8999999999999986543 3455555443322 22222 2455677765431 11 221111111110 Q ss_pred ccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhh-hHHHHHHHHHHHHHHHHHHH-hccceeecchH Q lcl|Aclame:pro 231 PLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDN-SVSTLKKINDTYDQFWWEIK-MGQRTVFVSDV 308 (517) Q Consensus 231 ~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~-~~~lid~lD~~~s~~~~e~~-~~~~~i~v~~~ 308 (517) + ..+..-++++++|++.|+ |+.....|+|+|+|+. +++|+|+||.++|++++.++ .+.+.+++... T Consensus 192 -----~---~~~~~~~~~g~vPvv~f~----n~~~~~~~~G~s~i~~~v~~l~Da~~~~~s~~~~~~~~~a~p~~~i~G~ 259 (480) T protein:vir:78 192 -----V---DGDVIKHGLGVVPVVPLT----NDPRLGNRYGRSEISPELRKVTDAASRTLMNLQSASQILGTPLRVISGV 259 (480) T ss_pred -----c---ccccccCCCCCcceEEee----cccccCCccCcccchhhHHHHHHHHHHHHHHHHHHHHhhcchhhhhhcC Confidence 0 112334778899998774 7778888999999985 89999999999999999996 56666665210 Q ss_pred HhccCCCCcccccCccCCcccceeeeecCCCCCCcceEEeccc-ChHHHHHHHHHHHHHHHHHhCCCccccccCCCccch Q lcl|Aclame:pro 309 MLRTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHDI-RTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKT 387 (517) Q Consensus 309 ~l~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~di-r~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~T 387 (517) -+....+.++. ..|. .+........+...++.|++- ..+.|.+.++.++++|+..+++++..||..+.+..| T Consensus 260 ~~~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~p~~~~g~~~~n~~S 332 (480) T protein:vir:78 260 TTDELTNDGEN---TTLD----IYYGRILTLASEAAKISEFKAAELRNFAEEMEVFRKEAASITGLPPQYLSSSSENPAS 332 (480) T ss_pred Ccccccccccc---chhh----hhhhhhccCCCCCceEEecCccCHHHHHHHHHHHHHHHhcccCCChHHhccccCcchH Confidence 00000000000 0011 111111111223344555443 578999999999999999999999999876666678 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcC- Q lcl|Aclame:pro 388 ATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFG- 466 (517) Q Consensus 388 Atei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G- 466 (517) |.+++.+...+..++..+++.|..+|.++++.|+.+.. +........+.|.|.+..+++..+.++.+.+++++| T Consensus 333 g~Alk~~~~~l~~ka~~~~~~f~~~l~~~~~l~~~~~g-----~~~~~~~~~i~v~f~~~~~~s~~~~ad~~~kl~~~g~ 407 (480) T protein:vir:78 333 AEAIIATDSRIVKMAERKGRIFGGAWERAMRIAMQIMG-----REVTEEYTRLETVWRDPSTPTVAAKADAVSKLYANGQ 407 (480) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCccccceeeeEEecCCCCCCHHHHHHHHHHHHHhcc Confidence 99999999999999999999999999999999886642 112234466899999999999999999999999876 Q ss_pred -CCCHHHHHHhhCCCCHHHHHHHHHHHHHhcccc------CCCCCccccC-CCCCCCC----C Q lcl|Aclame:pro 467 -FIPTVEAIQRIFKVPKKTAEQWLEEIRKDQIEL------DPVTISQRAQ-KRMFGDE----E 517 (517) Q Consensus 467 -~~S~~~~l~~~~~~~eeea~~el~~i~~E~~~~------~~~~~~~~~~-~~~~G~e----e 517 (517) ++|.++++. ++|+++++.+++ ++.++|+.+. .....+.... .+..|++ + T Consensus 408 ~~~s~et~~~-~lg~~~d~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (480) T protein:vir:78 408 GPIPKEQARI-DLGYTATQREQM-RDWDKQETEDMIDTLYSTTKAQADATPKPTVTETKTETQ 468 (480) T ss_pred ccCCHHHHHh-cCCCCHhHHHHH-HHHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCCccc Confidence 799999776 469998866443 3333333210 0000111111 1111221 1 No 53 >protein:vir:7768 Length: 484 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:149 # MgeName: Bxz2 # Cross-refs: genbank:acc:NP_817602;genbank:gi:29566032;genbank:GeneID:1259226 Probab=100.00 E-value=3.9e-43 Score=253.08 Aligned_cols=434 Identities=12% Similarity=0.036 Sum_probs=279.5 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccC-ccccccccccChHHHH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQG-KIQERDYMTLNLRKLS 79 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~-~~~~~~~~~ln~~~~i 79 (517) .-+++++.+.+. +...++.++.+||.|+++ +.+....- +..++....+|+|+.| T Consensus 14 ~~~~~~l~~~~~------------------------~~~~rl~~l~~Yy~G~~~-i~~~~~~~~~~~~~~~~~~n~~~~i 68 (484) T protein:vir:77 14 EKAREEMLNLFT------------------------ERTQDLGDNTAYYESERR-PDAVGVTVPQQMQKLLAHVGYPRLY 68 (484) T ss_pred HHHHHHHHHHHH------------------------HHHHHHHHHHHHHhcccc-chhcccccchhHHhhhhhcCcHHHH Confidence 111211111111 223466778899999965 33221111 1112223467999999 Q ss_pred HHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeCC-------- Q lcl|Aclame:pro 80 ADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDNG-------- 151 (517) Q Consensus 80 ~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~g-------- 151 (517) +..++++|+.. .+++++. +..++.++++.++|+|.....+++..|+.+|.+|+.+|.+.+ T Consensus 69 vd~~~~~l~~~--g~~~~~~----------~~~~~~l~~i~~~N~~d~~~~~~~~~a~~~G~a~~~v~~~~~~~~~~~~~ 136 (484) T protein:vir:77 69 IDAIAARQELE--GFRLGGA----------DKADEQLWDWWQANDLDIESTLGHTDSLVHGRSYITISKPDPNIDPGVDP 136 (484) T ss_pred HHHHHhhhccC--ceecCCc----------chhHHHHHHHHHhcCHhHHHHHHHHHHhhcCceEEEEecCCCCccccccc Confidence 99999988754 4555432 234566888999999999999999999999999999998743 Q ss_pred -eeEEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCccc Q lcl|Aclame:pro 152 -EIEFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRI 230 (517) Q Consensus 152 -~~~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v 230 (517) .++|.+++|.++++++.+..+...+++.++ ....++. .++++.|+.+. .|+ ++..+.. T Consensus 137 ~~~~i~~~~p~~~~~~~D~~~~~~~~a~~~~--~~~~~~~--~~~~~~y~~~~------~~~----~~~~~~~------- 195 (484) T protein:vir:77 137 EVPIIRVEPPTNLYAQIDPRTRQVMRAIRAI--EDEEGNE--VIGATLYLPNN------TVI----WNREDGQ------- 195 (484) T ss_pred ccceEEEeccceeEEEecCCCCceEEEEEEE--EeecCCc--EEEEEEEecCe------EEE----EEecCCc------- Confidence 257999999999998755545444443332 2222222 34455555432 111 2222111 Q ss_pred ccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhh-hhHHHHHHHHHHHHHHHHHHH-hccceeecch- Q lcl|Aclame:pro 231 PLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITD-NSVSTLKKINDTYDQFWWEIK-MGQRTVFVSD- 307 (517) Q Consensus 231 ~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~-~~~~lid~lD~~~s~~~~e~~-~~~~~i~v~~- 307 (517) |.. .+.+-++++++|++.|+ |+.....|+|+|+|+ .+++|+|++|.+.|++.+..+ .+-+.+++.. T Consensus 196 -----~~~--~~~~~~~~g~vPvv~f~----N~~~~~~~~G~s~i~~~v~~L~Da~~~~~s~~~~~~~~~a~p~~~i~G~ 264 (484) T protein:vir:77 196 -----WVQ--VANVAHNLEMVPVIPIP----NRTRLSDLYGTTEITPELRSVTDAAARTLMLMQATAELMGVPQRLLFGV 264 (484) T ss_pred -----eEe--eccccCCCCCcceEEec----cccccCccCCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhCC Confidence 100 11233678889998774 666788999999998 488999999999999999986 5555555411 Q ss_pred --HHhccCCCCcccccCccCCcccceeeeecCCCCCCcceEEecc-cChHHHHHHHHHHHHHHHHHhCCCccccccCCCc Q lcl|Aclame:pro 308 --VMLRTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHD-IRTEQYKEAINQALRTLEMELKLSVGTFSFDGRS 384 (517) Q Consensus 308 --~~l~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~d-ir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~ 384 (517) ..+... +..+. ..++.....+.. .++++ .++.|++ ...+.|.+.++.++++|+..+++++..||..+.. T Consensus 265 ~~~~~~~~-~~~~~---~~~~~~~~~~~~--~~~~~--~~~~q~~~~~~e~~~~~l~~~i~~~s~~~~~p~~~fg~~~~n 336 (484) T protein:vir:77 265 KGEELGVD-PETGQ---TLFDAYLARILA--FEDHE--SKAQQFSAAELRNFVDALDALDRKAAAYTGLPPYYLSFSSEN 336 (484) T ss_pred Ccchhccc-ccccc---hhhhhhhhhhcc--cCCCC--ceeEeecCCChHHHHHHHHHHHHHHhcccCCCHHHhccccCc Confidence 001000 11111 112111111111 12233 3334433 3568899999999999999999999999977666 Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHh Q lcl|Aclame:pro 385 MKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKT 464 (517) Q Consensus 385 ~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~ 464 (517) ..||.+++++...+.+++..+++.|+.+|.++++.++.+... .........+.|.|.+..+++..+.++.+.++++ T Consensus 337 ~~Sg~Al~~~~~~l~~ka~~k~~~f~~~l~~~~~l~~~~~~~----~~~~~~~~~i~v~w~~~~~~s~~~~ad~~~kl~~ 412 (484) T protein:vir:77 337 PASAEAIRSSESRLVKTVERKNKIFGGAWEQAMRVAYKVMNG----GDIPPEYYRMESIWRDPSTPTYAAKADAATKLYN 412 (484) T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CCcccccccceEEecCCCCCCHHHHHHHHHHHHh Confidence 678999999999999999999999999999999998876432 1222344678999999999999999999999998 Q ss_pred cC--CCCHHHHHHhhCCCCHHHHHHHHHHHHHhccc-----cCCCCCccccCCCC-----------CCCCC Q lcl|Aclame:pro 465 FG--FIPTVEAIQRIFKVPKKTAEQWLEEIRKDQIE-----LDPVTISQRAQKRM-----------FGDEE 517 (517) Q Consensus 465 ~G--~~S~~~~l~~~~~~~eeea~~el~~i~~E~~~-----~~~~~~~~~~~~~~-----------~G~ee 517 (517) +| ++|.++++. ++|+++++++ +++++++|+.+ .++......++.+. +.+++ T Consensus 413 ~g~gi~s~et~~~-~l~~~~~~~~-e~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (484) T protein:vir:77 413 NGQGVIPKERARI-DMGYSITERE-EMRKWDEEEQAQGLGLMGTMFGTDPSGGGNPDNPETPEPQPNPAEE 481 (484) T ss_pred ccCCCCCHHHHHh-cCCCChhHHH-HHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCcccccCCCccc Confidence 76 899999765 5599988654 56777665422 11111111111111 11111 No 54 >protein:vir:80680 Length: 441 # NCBI annotation: gp3 # Family: family:all:524 # MgeID: mge:1884 # MgeName: PA6 # Cross-refs: genbank:acc:YP_001285579;genbank:gi:148727085;genbank:GeneID:5247051 Probab=100.00 E-value=5e-43 Score=252.50 Aligned_cols=429 Identities=10% Similarity=-0.004 Sum_probs=279.5 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCccccccccc-CccccccccccChHHHH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQ-GKIQERDYMTLNLRKLS 79 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~-~~~~~~~~~~ln~~~~i 79 (517) =--.+.|+++++.. .....++.+..+||.|+++ +.+.... .+.....+...|+|+.| T Consensus 3 ~~~~~~i~~l~~~~---------------------~~~~~r~~~l~~Yy~G~~~-i~~~~~~~~~~~~~~k~~~n~~~~i 60 (441) T protein:vir:80 3 SDELALIEGMYDRI---------------------QRLSSWHCCIEGYYEGSNR-VRDLGVAIPPELQRVQTVVSWPGIA 60 (441) T ss_pred ccHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHhcCCc-chhcCcccchhhhhhhhhcchHHHH Confidence 00011122222110 1233567788899999975 3222111 11112345677999999 Q ss_pred HHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe-CCeeEEEEE Q lcl|Aclame:pro 80 ADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD-NGEIEFSWA 158 (517) Q Consensus 80 ~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d-~g~~~i~~v 158 (517) ++.++++|+ +..+++++ .+.|++++++|+|.....+++..++..|.+|+.+|.| +|.+++.++ T Consensus 61 vd~~~~~l~--~~g~~~~d--------------~~~l~~i~~~n~~~~~~~~~~~~~~~~G~a~~~v~~d~~g~~~i~~~ 124 (441) T protein:vir:80 61 VDALEERLD--WLGWTNGD--------------GYGLDGVYAANRLATASCDVHLDALIFGLSFVAIIPHGDGTVSVRPQ 124 (441) T ss_pred HHHHHhhhc--cccccCCC--------------hHHHHHHHHhcCHHHHHHHHHHHHhhcCeeEEEEEeCCCCceEEEEE Confidence 999999985 34454432 1347888889999999999999999999999999997 588999999 Q ss_pred cCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccccCC Q lcl|Aclame:pro 159 LANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEG 238 (517) Q Consensus 159 ~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~ 238 (517) +|.+++|++.+..+...++++.+... . +. .+..+.|..+. .++ |...+. |. |. T Consensus 125 ~p~~~~~i~d~~~~~~~~~~~~~~~~--~-~~--~~~~~vy~~~~------~~~-----~~~~~~---~~-------~~- 177 (441) T protein:vir:80 125 SPKNCTGKFSADGSRLDAGLVVQQTC--D-PE--VVEAELLLPDV------IVQ-----VERRGS---RE-------WV- 177 (441) T ss_pred ccceEEEEEeCCCCceeEEEEEEEEe--c-Cc--eEEEEEEecCe------EEE-----EEEcCC---cc-------ee- Confidence 99999998765555444444433221 1 22 22345554432 111 221111 11 00 Q ss_pred CCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhh-hHHHHHHHHHHHHHHHHHHH-hccceeecchHHhccCCCC Q lcl|Aclame:pro 239 MQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDN-SVSTLKKINDTYDQFWWEIK-MGQRTVFVSDVMLRTVPDE 316 (517) Q Consensus 239 l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~-~~~lid~lD~~~s~~~~e~~-~~~~~i~v~~~~l~~~~~~ 316 (517) ..+..-++++++|++.|+ |+.....|+|.|++.. +++|||+||.++|++.+..+ .+-+.+++.. + ..+. T Consensus 178 -~~~~~~~~~g~vPvv~~~----n~~~~~~~~G~s~l~~~v~~liDa~~~~~s~~~~~~~~~~~~~~~i~G-~---~~~~ 248 (441) T protein:vir:80 178 -EVDRIPNVLGAVPLVPIV----NRRRTSRIDGRSEITRSIRAYTDEAVRTLLGQSVNRDFYAYPQRWVTG-V---SADE 248 (441) T ss_pred -eccccccCCCceeEEEee----ccccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHhhcCceeeeec-C---Cccc Confidence 011233567888888774 6667789999999975 89999999999999999987 5555555421 1 1110 Q ss_pred cccccCccCCcccceeeeecCCCCCCcceEEecc-cChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHHHHHH Q lcl|Aclame:pro 317 SGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHD-IRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVSEN 395 (517) Q Consensus 317 ~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~d-ir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a~~ 395 (517) .. ...+......+..+..++++.++++.+++ -..+.|.+.++.++++|+..+++++..||..+.+..||.+++.+. T Consensus 249 ~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~p~~~~g~~~~~~~Sg~Al~~~~ 325 (441) T protein:vir:80 249 FS---QPGWVLSMASVWAVDKDDDGDTPNVGSFPVNSPTPYSDQMRLLAQLTAGEAAVPERYFGFITSNPPSGEALAAEE 325 (441) T ss_pred cc---cchhhhcccccccCCCCCCCCcceeEecCccchHHHHHHHHHHHHHHhcccCCCHHHhccCCCcchHHHHHHHHH Confidence 00 01121222223344444555566666543 457889999999999999999999999987776667899999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCC--CHHHH Q lcl|Aclame:pro 396 DLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFI--PTVEA 473 (517) Q Consensus 396 ~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~--S~~~~ 473 (517) ..+..++..+++.|+.+|+++++.++.+.. ...........+++.|++++++|..++++.+.+++++|++ |++++ T Consensus 326 ~~l~~k~~~~~~~f~~~l~~~~~l~~~~~~---~~~~~~~~~~~i~~~f~~~~~~~~~e~ad~~~kl~~~g~~~~s~~~~ 402 (441) T protein:vir:80 326 SRLVKRAERRQTSFGQGWLSVGFLAAKALD---SRVDEADFFGDVGLRWRDASTPTRAATADAVTKLVGAGILPADSRTV 402 (441) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCcccccceeeeEEeCCCCCcCHHHHHHHHHHHHhcCcccccHHHH Confidence 999999999999999999999998887643 2222333346789999999999999999999999999964 66775 Q ss_pred HHhhCCCCHHHHHHHHHHHHHhccccC---CCCCccccCCC Q lcl|Aclame:pro 474 IQRIFKVPKKTAEQWLEEIRKDQIELD---PVTISQRAQKR 511 (517) Q Consensus 474 l~~~~~~~eeea~~el~~i~~E~~~~~---~~~~~~~~~~~ 511 (517) + .+.|+++++.+++ ++.++|+.++. .......+++- T Consensus 403 ~-~~l~~~~~e~~~~-~~e~~e~~~~~~~~~~~~~~~~~~~ 441 (441) T protein:vir:80 403 L-EMLGLDDVQVEAV-MRHRAESSDPLAVLAGAISRQTNEV 441 (441) T ss_pred H-HhCCCCHHHHHHH-HHHHHHHHHHHHHHhhhhhcccccC Confidence 5 5669988876543 33333322110 00011111111 No 55 >protein:vir:2427 Length: 485 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:52 # MgeName: D29 # Cross-refs: genbank:acc:NP_046829;genbank:gi:9630397;genbank:GeneID:1261620 Probab=100.00 E-value=6.9e-43 Score=251.71 Aligned_cols=443 Identities=12% Similarity=0.047 Sum_probs=281.3 Q ss_pred HHHHhhcccchhhhcccc-----CcCCHHHHHHHHHHHHHhcCCCccccccccc-CccccccccccChHHHHHHHHhhhh Q lcl|Aclame:pro 14 GGYALSGQTLKSINDHEK-----INIDPNELARIERNLRQYEGDYPQVEYINSQ-GKIQERDYMTLNLRKLSADVLSGLV 87 (517) Q Consensus 14 ~~~~~~~~~~~~~~~~~~-----i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~-~~~~~~~~~~ln~~~~i~~~~A~ll 87 (517) +.+ -+..++...+... +..-.....|+.+..+||.|+++. .+.... .....+.+..+|+|+.|+..++++| T Consensus 1 ~~~--~i~~~~~~~~~~~~~~~L~~~~~~~~~r~~~~~~YY~G~~~i-~~~~~~~~~~~~~~~~~~n~~~~ivd~~~~~l 77 (485) T protein:vir:24 1 MTA--PLPGQEEIADPAIARDEMVSAFEDQNQNLRSNTSYYEAERRP-EAIGVTVPVQMQSLLAHVGYPRLYVDSIAERQ 77 (485) T ss_pred CCC--CCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCch-hhcCcccchhhhhhhhccchHHHHHHHHhhhh Confidence 010 0111110000000 000012345777888999999753 222111 1111233455799999999999999 Q ss_pred cCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeC---------CeeEEEEE Q lcl|Aclame:pro 88 FNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDN---------GEIEFSWA 158 (517) Q Consensus 88 ~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~---------g~~~i~~v 158 (517) +.. .|++++. +..++.+++++++|+|.....+++..|+.+|.+|+.+|.+. +.++|..+ T Consensus 78 ~~~--g~~~~~~----------~~~~~~l~~i~~~N~~d~~~~~~~~~a~i~G~ay~~v~~~~~~~~~~~~~~~~~i~~~ 145 (485) T protein:vir:24 78 AVE--GFRLGDA----------DEADEELWQWWQANNLDIEAPLGYTDAYVHGRSYITISRPDPQIDLGWDPNVPLIRVE 145 (485) T ss_pred ccC--ceecCCC----------chhHHHHHHHHHhcChhHHHHHHHHHHhhcCceEEEEecCCcccccccCCCcceEEEe Confidence 755 4666542 23456688899999999999999999999999999999863 56789999 Q ss_pred cCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccccCC Q lcl|Aclame:pro 159 LANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEG 238 (517) Q Consensus 159 ~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~ 238 (517) +|.+++|++.+..+...+++..+.. ..++ ..+.+++|+.+. .|+ ++..+ |..+. T Consensus 146 ~p~~~~~i~D~~~~~~~~~~~~~~~--~~~~--~~~~~~~y~~~~------~~~----~~~~~-----~~~~~------- 199 (485) T protein:vir:24 146 PPTRMYAEIDPRIGRPAKAIRVAYD--AEGN--EIQAATLYTPNE------TFG----WFRAE-----GEWVE------- 199 (485) T ss_pred ccceeEEEeeCCcCceeEEEEEEEe--ecCC--eEEEEEEEcCCc------EEE----EEecC-----CceEe------- Confidence 9999999875554544444333221 2222 234455554331 121 22211 11111 Q ss_pred CCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhh-hHHHHHHHHHHHHHHHHHHH-hccceeecchHHhcc--CC Q lcl|Aclame:pro 239 MQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDN-SVSTLKKINDTYDQFWWEIK-MGQRTVFVSDVMLRT--VP 314 (517) Q Consensus 239 l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~-~~~lid~lD~~~s~~~~e~~-~~~~~i~v~~~~l~~--~~ 314 (517) ....-++++++|+++|+ |+.....|+|+|+++. +++|+|++|.+.|++.+..+ .+-+.+++...-+.. .. T Consensus 200 --~~~~~h~~g~vPvv~f~----n~~~~~~~~G~s~i~~~v~~liDa~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~~ 273 (485) T protein:vir:24 200 --WFSDPHGLGAVPVVPLP----NRTRLSDLYGTSEITPELRSMTDAAARILMLMQATAELMGVPQRLIFGIKPEEIGVD 273 (485) T ss_pred --ecccccCCCcccEEEec----cCcccCCcCCcccchhhHHHHHHHHHHHHHHHHHHHHhhcchhhhhccCCccccccc Confidence 11123667889999884 6667788999999985 79999999999999999886 455555542100000 00 Q ss_pred CCcccccCccCCcccceeeeecCCCCCCcceEEec-ccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHHHH Q lcl|Aclame:pro 315 DESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTH-DIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVS 393 (517) Q Consensus 315 ~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~-dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a 393 (517) ++.+. ..|+...... +..+++ ..++.|+ ....+.|.+.++.++++++..+++++..||..+....||.++++ T Consensus 274 ~~~~~---~~~~~~~~~i--~~~~~~--~~~~~q~~~~~~e~~~~~l~~~i~~~s~~~~~p~~~fg~~~~n~~Sg~Al~~ 346 (485) T protein:vir:24 274 PETGQ---TLFDAYLARI--LAFEDA--EGKIQQFSAAELANFTNALDQIAKQVAAYTGLPPQYLSTAADNPASAEAIRA 346 (485) T ss_pred ccccc---chhhhcccce--eccCCC--CceEEeecccchHHHHHHHHHHHHHHhcccCCCHHHhccccCcchHHHHHHH Confidence 11111 1121110001 111222 2334443 33568999999999999999999999999876666678999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcC--CCCHH Q lcl|Aclame:pro 394 ENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFG--FIPTV 471 (517) Q Consensus 394 ~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G--~~S~~ 471 (517) +...+.+++..+++.|+.+|+++++.++.+... .+.......|.|.|.++.+++..+.++.+.+++++| ++|.+ T Consensus 347 ~~~~l~~ka~~~~~~f~~~l~~~~~l~~~~~~~----~~~~~d~~~i~v~f~~~~~~s~~~~ad~~~kl~~~g~~~~s~e 422 (485) T protein:vir:24 347 AESRLIKKVERKNAIFGGAWEEAMRLAYRLMKG----GDVPPDMLRMETVWRDPSTPTYAAKADAATKLYGNGQGVIPRE 422 (485) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCccccceeeEEecCCCCCCHHHHHHHHHHHHhcccccCCHH Confidence 999999999999999999999999998876432 223345567999999999999999999999999876 89999 Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhcccc-----------CCCCCccccCCCCCCCCC Q lcl|Aclame:pro 472 EAIQRIFKVPKKTAEQWLEEIRKDQIEL-----------DPVTISQRAQKRMFGDEE 517 (517) Q Consensus 472 ~~l~~~~~~~eeea~~el~~i~~E~~~~-----------~~~~~~~~~~~~~~G~ee 517 (517) +++ .++|+++++. ++++++++|+.+. .+...++ +.++...+++ T Consensus 423 t~~-~~l~~~~d~~-~e~~~~~ee~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~ 476 (485) T protein:vir:24 423 RAR-KDMGYSIAER-EEMRRWDEEEAAMGLGLLGTMVDADPTVPGS-PNPTPAPKPQ 476 (485) T ss_pred HHH-hhCCCCHhHH-HHHHHHHHHHhhhhhhHHHhhcccCCCCCCC-CCCCCCCCCc Confidence 976 5679998865 4577776665321 1111111 1111111111 No 56 >protein:vir:2341 Length: 488 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:51 # MgeName: Bxb1 # Cross-refs: genbank:acc:NP_075278;genbank:gi:12657865;genbank:GeneID:920078 Probab=100.00 E-value=2.4e-42 Score=248.74 Aligned_cols=448 Identities=9% Similarity=-0.019 Sum_probs=281.9 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCccccccccc-CccccccccccChHHHH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQ-GKIQERDYMTLNLRKLS 79 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~-~~~~~~~~~~ln~~~~i 79 (517) ..+++++.+.+ .....|+.+..+||.|+++ +.+.... .......+..+|+|+.| T Consensus 10 ~~~i~~L~~~~------------------------~~~~~r~~~~~~Yy~g~~~-i~~~~~~~~~~~~~~~~~~n~~~~i 64 (488) T protein:vir:23 10 EKLRDQLLDAF------------------------ENKQNELKSSKAYYDAERR-PDAIGLAVPLDMRKYLAHVGYPRTY 64 (488) T ss_pred HHHHHHHHHHH------------------------HHHHHHHHHHHHHHhcccc-hhhcCcccchhhhhhhhhcchHHHH Confidence 22222111111 1123567788899999975 4333222 11222344678999999 Q ss_pred HHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe---------C Q lcl|Aclame:pro 80 ADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD---------N 150 (517) Q Consensus 80 ~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d---------~ 150 (517) +..+|+.|+-+ .++++.+..............+.|+++++.|+|.....+++..++.+|.+|+.+|.. + T Consensus 65 vd~~a~~l~~~--Gf~~~~~~~~~~~~~~d~~~~~~l~~i~~~N~~~~~~~~~~~~a~i~G~a~~~v~~~~~~~~~~~~~ 142 (488) T protein:vir:23 65 VDAIAERQELE--GFRIPSANGEEPESGGENDPASELWDWWQANNLDIEATLGHTDALIYGTAYITISMPDPEVDFDVDP 142 (488) T ss_pred HHHHHHhhhcc--ceeccCCcccccccccchhHHHHHHHHHHhcChhHHHHHHHHHHhhcCceEEEEecCCcccccCCCC Confidence 99999887644 344444332222233334556788999999999999999999999999999987753 3 Q ss_pred CeeEEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCccc Q lcl|Aclame:pro 151 GEIEFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRI 230 (517) Q Consensus 151 g~~~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v 230 (517) +.++|.+++|.+++|++.+..+....++.++. ..+++. +++.++++... .|+ ++. .+. +.. T Consensus 143 ~~~~i~~~~p~~~~~~~d~~~~~~~~~~~~~~--~~~~~~--~~~~~~y~~~~------~~~----~~~-~~~---~~~- 203 (488) T protein:vir:23 143 EVPLIRVEPPTALYAEVDPRTRKVLYAIRAIY--GADGNE--IVSATLYLPDT------TMT----WLR-AEG---EWE- 203 (488) T ss_pred CcceEEEeccceeEEEEecCCCceEEEEEEEE--ecCCCc--EEEEEEEecCc------EEE----EEe-cCC---ceE- Confidence 56789999999999987655554444443322 222222 33455655432 222 112 111 100 Q ss_pred ccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhh-hhHHHHHHHHHHHHHHHHHHH-hccceeecchH Q lcl|Aclame:pro 231 PLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITD-NSVSTLKKINDTYDQFWWEIK-MGQRTVFVSDV 308 (517) Q Consensus 231 ~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~-~~~~lid~lD~~~s~~~~e~~-~~~~~i~v~~~ 308 (517) .....-++++++|++.|+ |+.....|+|+|+++ .+++|+|++|.++|++.+.++ .+-+..++-.. T Consensus 204 ---------~~~~~~h~~g~vPvv~f~----n~~~~~~~~G~s~i~~~v~~l~Da~~~~~s~~~~~~~~~a~p~~~i~G~ 270 (488) T protein:vir:23 204 ---------APTSTPHGLEMVPVIPIS----NRTRLSDLYGTSEISPELRSVTDAAAQILMNMQGTANLMAIPQRLIFGA 270 (488) T ss_pred ---------eccccccCCCCcceEEec----cccccCCcCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCC Confidence 011233678889998774 666778899999998 578999999999999999886 44444444110 Q ss_pred HhccCCCCcccccCccCCcccceeeeecCCCCCCcceEEec-ccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccch Q lcl|Aclame:pro 309 MLRTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTH-DIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKT 387 (517) Q Consensus 309 ~l~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~-dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~T 387 (517) -+....... ......|.... ..+..-+++...++.|+ ....+.|.+.++.++++|...+++++..||....+..+ T Consensus 271 ~~~~~~~~~-~~~~~~~~~~~---~~v~~~~~g~~~~~~q~~~~~~~~~~~~l~~~i~~~~~~~~~p~~~~g~~~~n~~S 346 (488) T protein:vir:23 271 KPEELGINA-ETGQRMFDAYM---ARILAFEGGEGAHAEQFSAAELRNFVDALDALDRKAASYSGLPPQYLSSSSDNPAS 346 (488) T ss_pred Ccccccccc-cccchhhhhhh---hhhccCCCCCCceeEecCCCChHHHHHHHHHHHHHHhcccCCCHHHhccccCcchH Confidence 000000000 00001111100 01111122333444553 44679999999999999999999999999876666678 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcC- Q lcl|Aclame:pro 388 ATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFG- 466 (517) Q Consensus 388 Atei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G- 466 (517) |.+++++.+.+.+++..+++.|+.+|.++++.++.+.... ........+.+.|.+..+.|..+.++.+.+++++| T Consensus 347 g~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~~~~----~~~~~~~~i~v~f~~~~~~s~~~~ada~~kl~~~g~ 422 (488) T protein:vir:23 347 AEAIKAAESRLVKKVERKNKIFGGAWEQAMRLAYKMVKGG----DIPTEYYRMETVWRDPSTPTYAAKADAAAKLFANGA 422 (488) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CcchhhccceEEecCCCCCCHHHHHHHHHHHHhccc Confidence 9999999999999999999999999999999998765421 12234467999999999999999999999999876 Q ss_pred -CCCHHHHHHhhCCCCHHHHHHHHHHHHHhccc----------cC--CCCCccccCCCCCCCCC Q lcl|Aclame:pro 467 -FIPTVEAIQRIFKVPKKTAEQWLEEIRKDQIE----------LD--PVTISQRAQKRMFGDEE 517 (517) Q Consensus 467 -~~S~~~~l~~~~~~~eeea~~el~~i~~E~~~----------~~--~~~~~~~~~~~~~G~ee 517 (517) ++|+++++.. +|+++++. ++++++++++.+ .. +.....+...+..-++| T Consensus 423 ~~~s~et~~~~-l~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 484 (488) T protein:vir:23 423 GLIPRERGWVD-MGYTIVER-EQMRQWLEQDQKQGLGLIGSLYGASTPEGKPGEAPVGEPPAPE 484 (488) T ss_pred ccCCHHHHHHh-CCCCchHH-HHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCCCCCCC Confidence 7999997654 58877653 344554333211 00 11111111222223333 No 57 >protein:vir:104082 Length: 485 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:1656 # MgeName: Che12 # Cross-refs: genbank:acc:YP_655593;genbank:gi:109392464;genbank:GeneID:4156950 Probab=100.00 E-value=1.3e-42 Score=250.30 Aligned_cols=442 Identities=12% Similarity=0.034 Sum_probs=280.2 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccc-cCccccccccccChHHHH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINS-QGKIQERDYMTLNLRKLS 79 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~-~~~~~~~~~~~ln~~~~i 79 (517) |.-.+..-.++.++ ..+. .....|+.+..+||.|+++.. +... .....++.+..+|+|+.| T Consensus 8 ~~~~~~~~~~~~~l------------~~~~-----~~~~~r~~~~~~Yy~G~~~i~-~~~~~~~~~~~~~~~~~n~~~~i 69 (485) T protein:vir:10 8 QEEIEDPAIARDEM------------VSAF-----EDSTQNLKTNTSYYEAERRPE-AIGVTVPIQMQSLLAHVGYPRLY 69 (485) T ss_pred CCCCCCHHHHHHHH------------HHHH-----HHHHHHHHHHHHHHhcCCcch-hcCCCCChhhhhhhhhcCcHHHH Confidence 11111111111111 0000 123457788889999997542 2211 111222334557999999 Q ss_pred HHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe---------C Q lcl|Aclame:pro 80 ADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD---------N 150 (517) Q Consensus 80 ~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d---------~ 150 (517) +..+|++|+.. .|++++. +..++.++++++.|+|.....+++..|+.+|.+|+.+|.+ + T Consensus 70 vd~~~~~l~~~--g~~~~~~----------~~~~~~~~~i~~~N~~d~~~~~~~~~a~i~G~ay~~v~~~e~~~~~~~~~ 137 (485) T protein:vir:10 70 VDSIAERQAVE--GFRFGDA----------DEADEELWQWWQANNLDIEAPLGYTDAYVHGRSYITISRPDPQIDLGWDP 137 (485) T ss_pred HHHHHhhhccc--ceecCCC----------chhHHHHHHHHHhcCHhHHHHHHHHHHhhcCceEEEEeeCCcccccccCC Confidence 99999998643 5665432 2345678888999999999999999999999999999976 3 Q ss_pred CeeEEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCccc Q lcl|Aclame:pro 151 GEIEFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRI 230 (517) Q Consensus 151 g~~~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v 230 (517) +.++|.+++|.+++|++.+..+...+++.+... .. ...++.+++|+.+. .|+ ++..+.. .. T Consensus 138 ~~~~i~~~~p~~~~~~~D~~~~~~~~~~~~~~~--~~--~~~~~~~~~y~~~~------~~~----~~~~~~~----~~- 198 (485) T protein:vir:10 138 NTPIIRVEPPTRMYAEIDPRIGRVSKAIRVAYD--AE--GNEIQAATLYTPND------IFG----WYRVENE----WQ- 198 (485) T ss_pred CeeEEEEEccceeEEEEcCCCCceeEEEEEEEe--eC--CCeEEEEEEEeCCe------EEE----EEEcCCc----eE- Confidence 578899999999999875555555555443322 22 22345566665432 111 1221111 00 Q ss_pred ccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhh-hHHHHHHHHHHHHHHHHHHH-hccceeecchH Q lcl|Aclame:pro 231 PLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDN-SVSTLKKINDTYDQFWWEIK-MGQRTVFVSDV 308 (517) Q Consensus 231 ~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~-~~~lid~lD~~~s~~~~e~~-~~~~~i~v~~~ 308 (517) .....-++++++|++.| +|+.+...|+|+|+++. +++|+|++|.+.|++.+..+ .+-+.+++... T Consensus 199 ---------~~~~~~~~~g~vPvv~~----~n~~~~~~~~G~s~i~~~v~~liDa~~~~~s~~~~~~~~~a~p~~~i~G~ 265 (485) T protein:vir:10 199 ---------EWFNNPHGLGVVPVVPI----PNRTRLSDLYGTSEITPELRSMTDAAARILMLMQATAELMGVPQRLIFGI 265 (485) T ss_pred ---------EeccccCCCCcccEEEe----ccccccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHhcC Confidence 00112367788888877 47778889999999985 78999999999999999886 55554444210 Q ss_pred Hhcc--CCCCcccccCccCCcccceeeeecCCCCCCcceEEecc-cChHHHHHHHHHHHHHHHHHhCCCccccccCCCcc Q lcl|Aclame:pro 309 MLRT--VPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHD-IRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSM 385 (517) Q Consensus 309 ~l~~--~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~d-ir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~ 385 (517) -+.. ..++.+. ..++...... +..+++ ..++.|++ -..+.|.+.++.++++|+..+++++..||....+. T Consensus 266 ~~~~~~~~~~~~~---~~~~~~~~~i--~~~~~~--d~k~~q~~~~~~~~~~~~l~~~i~~~~~~~~~p~~~fg~~~~n~ 338 (485) T protein:vir:10 266 KPEEIGVDPETGQ---TLFDAYLARI--LAFEDA--EGKIQQFSAAELANFTNALDQIAKQVAAYTGLPPQYLSTAADNP 338 (485) T ss_pred Ccccccccccccc---hhhhhcccce--eccCCC--CceEEeecccchHHHHHHHHHHHHHHhcccCCCHHHhccccCch Confidence 0000 0111111 1111111111 111222 23344433 34688999999999999999999999998766666 Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhc Q lcl|Aclame:pro 386 KTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTF 465 (517) Q Consensus 386 ~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~ 465 (517) .+|.++++....+.+++..+++.|..+|.++++.++.+... .........+.|.|.+..++|..+.++.+.+++++ T Consensus 339 ~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~~l~~~~~~~----~~~~~~~~~i~v~w~~~~~~~~~~~ada~~kl~~a 414 (485) T protein:vir:10 339 ASAEAIRAAESRLIKKVERKNSIFGGAWEEAMRLAYRMMKG----GDVPPDMLRMETVWRDPSTPTYAAKADAASKLYNG 414 (485) T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CCCcccceeeeEEecCCCCCCHHHHHHHHHHHHhc Confidence 78999999999999999999999999999999988776432 22233456799999999999999999999999987 Q ss_pred C--CCCHHHHHHhhCCCCHHHHHHHHHHHHHhcccc---------CC--CCCcc-ccCCC------CCCCCC Q lcl|Aclame:pro 466 G--FIPTVEAIQRIFKVPKKTAEQWLEEIRKDQIEL---------DP--VTISQ-RAQKR------MFGDEE 517 (517) Q Consensus 466 G--~~S~~~~l~~~~~~~eeea~~el~~i~~E~~~~---------~~--~~~~~-~~~~~------~~G~ee 517 (517) | ++|.++++ .++|++++++ ++++++++|+.+. .+ ...++ ...+. .+|++= T Consensus 415 g~~~~s~et~~-~~lg~~~~~~-~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (485) T protein:vir:10 415 GTGVIPRERAR-KDMGYSIAER-EEMRRWDEEEAAMGLGLIGTMVDPNPTVPGSPSPAPAPKPAALESGGDA 484 (485) T ss_pred cccCCCHHHHH-HhCCCCHhHH-HHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccCcCCCCCCCC Confidence 7 89999976 4679998875 4556666554320 11 10100 00000 000000 No 58 >protein:vir:4223 Length: 486 # NCBI annotation: predicted 53.7Kd protein # Family: family:all:524 # MgeID: mge:89 # MgeName: L5 # Cross-refs: genbank:acc:NP_039678;swissprot:sw:q05220;genbank:gi:9625444;uniprot:Q05220;genbank:GeneID:2942930;interpro:IPR010859 Probab=100.00 E-value=7.9e-42 Score=245.92 Aligned_cols=441 Identities=11% Similarity=0.009 Sum_probs=281.2 Q ss_pred Cch--HHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCcc-ccccccccChHH Q lcl|Aclame:pro 1 MKV--IQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKI-QERDYMTLNLRK 77 (517) Q Consensus 1 m~~--~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~-~~~~~~~ln~~~ 77 (517) +++ .+--+.++.+..... .....|+.+..+||.|+++. .++...-.. .++.+..+|+|+ T Consensus 6 ~~~~e~~~~~~~~~~l~~~~-----------------~~~~~r~~~l~~YY~G~~~i-~~~~~~~~~~~~~~~~v~n~~~ 67 (486) T protein:vir:42 6 PGMEEIEDPAVVREEMISAF-----------------EDASKDLASNTSYYDAERRP-EAIGVTVPREMQQLLAHVGYPR 67 (486) T ss_pred CCCCCcccHHHHHHHHHHHH-----------------HHHHHHHHHHHHHhcccCcc-hhcccccchhHhhhhhccchHH Confidence 111 111111121111100 11235677788899999743 332221111 122234579999 Q ss_pred HHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe-------- Q lcl|Aclame:pro 78 LSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD-------- 149 (517) Q Consensus 78 ~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d-------- 149 (517) .|+..+++.|+ +..+++++. +..++.+++++++|+|.....+++..|+.+|.+|+.+|.+ T Consensus 68 ~iVd~~~~~l~--~~g~~~~~~----------~~~~~~~~~i~~~N~~d~~~~~~~~~a~~~G~ay~~v~~~e~~~~~~~ 135 (486) T protein:vir:42 68 LYVDSVAERQA--VEGFRLGDA----------DEADEELWQWWQANNLDIEAPLGYTDAYVHGRSFITISKPDPQLDLGW 135 (486) T ss_pred HHHHHHHhhhc--ccceecCCC----------chhHHHHHHHHHhcChhHHHHHHHHHHhhcCceEEEEecCCccccccc Confidence 99999999885 445666542 2234568889999999999999999999999999999865 Q ss_pred -CCeeEEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCc Q lcl|Aclame:pro 150 -NGEIEFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGK 228 (517) Q Consensus 150 -~g~~~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~ 228 (517) ++.++|..++|.+++|++.+..+...+++.+.. ... ....+.+++++.+. .|+. ...+ |. T Consensus 136 ~~~~~~i~~~~p~~~~~i~d~~~~~~~~~~~~~~--~~~--~~~~~~~~~y~~~~------~~~~----~~~~-----~~ 196 (486) T protein:vir:42 136 DQNVPIIRVEPPTRMHAEIDPRINRVSKAIRVAY--DKE--GNEIQAATLYTPME------TIGW----FRAD-----GE 196 (486) T ss_pred CCCeeEEEEecccceEEEEeCCCCCeEEEEEEEE--ecC--CCeEEEEEEEcCCc------EEEE----EecC-----Cc Confidence 356789999999999987655554444443322 122 22334456655432 2221 1111 11 Q ss_pred ccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhh-hHHHHHHHHHHHHHHHHHHH-hccceeecc Q lcl|Aclame:pro 229 RIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDN-SVSTLKKINDTYDQFWWEIK-MGQRTVFVS 306 (517) Q Consensus 229 ~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~-~~~lid~lD~~~s~~~~e~~-~~~~~i~v~ 306 (517) .. .....-++++++|++.|+ |+.....|+|+|+|+. +++|+|++|.++|++.+..+ .+-+.+++- T Consensus 197 ~~---------~~~~~~h~~g~vPvv~~~----n~~~~~~~~G~s~i~~~v~~liDa~~~~~s~~~~~~e~~a~p~~~i~ 263 (486) T protein:vir:42 197 WA---------EWFNVPHGLGVVPVVPLP----NRTRLSDLYGTSEITPELRSMTDAAARILMLMQATAELMGVPQRLIF 263 (486) T ss_pred EE---------eecceecCCCCceEEEec----cccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHhhcchHHHhh Confidence 11 111233678889998774 7778899999999995 78999999999999999876 444444441 Q ss_pred h---HHhccCCCCcccccCccCCcccceeeeecCCCCCCcceEEe-cccChHHHHHHHHHHHHHHHHHhCCCccccccCC Q lcl|Aclame:pro 307 D---VMLRTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVT-HDIRTEQYKEAINQALRTLEMELKLSVGTFSFDG 382 (517) Q Consensus 307 ~---~~l~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~-~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~ 382 (517) . ..+. ..++.+. ..|....... +..+++ .+++.| +....+.|.+.++.++++++..+++++..||... T Consensus 264 G~~~~~~~-~~~~~~~---~~~~~~~~~~--~~~~~~--~~~~~q~~~~~~e~~~~~l~~~i~~~s~~~~~p~~~fg~~~ 335 (486) T protein:vir:42 264 GIKPEEIG-VDSETGQ---TLFDAYLARI--LAFEDA--EGKIQQFSAAELANFTNALDQIAKQVAAYTGLPPQYLSTAA 335 (486) T ss_pred cCCccccc-ccccccc---chhhhhhchh--cccCCC--CceEEeecccCHHHHHHHHHHHHHHHhcccCCCHHHhcccc Confidence 1 0000 0011110 1121111000 111222 234444 3446789999999999999999999999998776 Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHH Q lcl|Aclame:pro 383 RSMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQA 462 (517) Q Consensus 383 ~~~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~ 462 (517) ....||.+++++...+.+++..+++.|+.+|.++++.++.+... .........+.|.|.+..+.|..+.++.+.++ T Consensus 336 ~n~~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~l~~~~~~~----~~~~~d~~~i~v~w~~~~~~s~~~~ad~~~kl 411 (486) T protein:vir:42 336 DNPASAEAIRAAESRLIKKVERKNLMFGGAWEEAMRIAYRIMKG----GDVPPDMLRMETVWRDPSTPTYAAKADAATKL 411 (486) T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCccccceeeeEEecCCCCCCHHHHHHHHHHH Confidence 66678999999999999999999999999999999998876432 11233456799999999999999999999999 Q ss_pred Hhc--CCCCHHHHHHhhCCCCHHHHHHHHHHHHHhcccc-----------CCCCCc-cccCCCCCCCCC Q lcl|Aclame:pro 463 KTF--GFIPTVEAIQRIFKVPKKTAEQWLEEIRKDQIEL-----------DPVTIS-QRAQKRMFGDEE 517 (517) Q Consensus 463 ~~~--G~~S~~~~l~~~~~~~eeea~~el~~i~~E~~~~-----------~~~~~~-~~~~~~~~G~ee 517 (517) +++ |++|.++++ .++|+++++. +|++|+++|+.+. .+...+ ..+.+...++++ T Consensus 412 ~~~~~g~~s~et~~-~~lg~~~d~~-~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (486) T protein:vir:42 412 YGNGQGVIPRERAR-IDMGYSVKER-EEMRRWDEEEAAMGLGLLGTMVDADPTVPGSPSPTAPPKPQPA 478 (486) T ss_pred HhcccCCCCHHHHH-hcCCCChhHH-HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCcc Confidence 986 689999976 5779998864 5778887665321 111111 111111112222 No 59 >protein:vir:99072 Length: 479 # NCBI annotation: gp27 # Family: family:all:524 # MgeID: mge:1671 # MgeName: Wildcat # Cross-refs: genbank:acc:YP_655892;genbank:gi:109521464;genbank:GeneID:4158037 Probab=100.00 E-value=1.5e-41 Score=244.38 Aligned_cols=431 Identities=9% Similarity=0.013 Sum_probs=267.1 Q ss_pred hHH---------HHHHHH-HHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCcccc----c Q lcl|Aclame:pro 3 VIQ---------RIKNFF-KRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQE----R 68 (517) Q Consensus 3 ~~~---------~ik~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~----~ 68 (517) ||+ .|+.++ +++... | .....|+.+..+||.|+++- .+......... . T Consensus 1 ~~~~p~~~l~~~~~~~~~~~~l~~~-----------~------~~~~~r~~~~~~YY~g~~~i-~~~~~~~~~~~~~~~~ 62 (479) T protein:vir:99 1 MIDLPDEDLSSEGLAKYLETKVFPK-----------M------NTECERLDDFEAWTKNGQEV-PDLATRHKNKEREVLQ 62 (479) T ss_pred CccCCcccCChhHHHHHHHHHHHHH-----------H------HHHhHHHHHHHHHHhcCCcc-cccccccCChhHHHHH Confidence 111 011111 010000 0 11234677788999999753 22222111111 1 Q ss_pred cccccChHHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEE Q lcl|Aclame:pro 69 DYMTLNLRKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYV 148 (517) Q Consensus 69 ~~~~ln~~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~ 148 (517) ++..+|+|+.|+..+++.|+ +..+++.+.. .++.+.+++++|+|.....+++..++.+|.+|+.+|. T Consensus 63 ~~~~~n~~~~iVd~~~~~l~--~~gf~~~d~~-----------~~~~~~~i~~~N~~d~~~~~~~~~a~~~G~af~~v~~ 129 (479) T protein:vir:99 63 QLSRKPWMGLMVNSFAQQLI--VDGYRKTGTN-----------ENAKGWDTWRLNQMDKQQFWLNRAVLTFGYAFIKVTS 129 (479) T ss_pred HHhhcCcHHHHHHHHHhhcc--cccccCCCch-----------hhHHHHHHHHhcChhHHHHHHHHHHhhcCceEEEEec Confidence 22357999999999999886 4456654432 2455778889999999999999999999999998884 Q ss_pred -----e-CCeeEEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCC-cEEEEEEEEEeecceeeccceEEEEEEEeecC Q lcl|Aclame:pro 149 -----D-NGEIEFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNK-TVYYTLLEFHEWEKTEEGESLYVITNELYKSD 221 (517) Q Consensus 149 -----d-~g~~~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~-~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~ 221 (517) | .|.++|.+++|.+++|++.+.......++.. ...+.+ ..+|+... + .+|... T Consensus 130 ~~~~~d~~g~~~i~~~~p~~~~~iydd~~~~~~~~~~~---~~~~~~~~~~~~~~~-------------~----~~~~~~ 189 (479) T protein:vir:99 130 GISPLDGTTVARIKCIDPRDAFAIWEDPYWDEWPKYLL---ERQPNGQYWWWTEED-------------Y----SIFEFK 189 (479) T ss_pred CCCCcCCCCceEEEEechhheEEEecCCcccceeeEEE---eecCceeEEEEecce-------------E----EEEEec Confidence 3 4778999999999999865544333222221 111111 11222111 1 112211 Q ss_pred CccccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHH-hcc Q lcl|Aclame:pro 222 NEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIK-MGQ 300 (517) Q Consensus 222 ~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~-~~~ 300 (517) +. . | ...+..-++++++||++|+| +... .++|+|+|+.+++++|++|.+.|++.+..+ .+. T Consensus 190 ~~----~-------~--~~~~~~~h~~g~vPvv~f~n----~~~~-~~~g~sd~e~v~~liDa~~~~~s~~~~~~~~~a~ 251 (479) T protein:vir:99 190 QG----K-------F--IYRETVSHDYGHIPFVRYVN----VMDL-RGVCYGDVEPLVTVAKAIDKTGLDILLVQHHQSF 251 (479) T ss_pred CC----c-------e--eeccccccCCCCcceEEeec----CCCc-CcCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhc Confidence 11 0 0 01122336778899998864 4333 568999999999999999999999999986 555 Q ss_pred ceeecchHHhccCCCCcccccCccCCcccceeeeecCCCCCCcceEEec-ccChHHHHHHHHHHHHHHHHHhCCCccccc Q lcl|Aclame:pro 301 RTVFVSDVMLRTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTH-DIRTEQYKEAINQALRTLEMELKLSVGTFS 379 (517) Q Consensus 301 ~~i~v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~-dir~e~~~~~l~~~l~~i~~~~g~s~~~~~ 379 (517) +..++....+.....+.... +.. ..-+.+...+++ +++.|. +..++.|.+.++.++++|+..+++++..|| T Consensus 252 p~~~i~G~~~~~~~~~~~~~----~~~--~~~~i~~~~~~~--~~~~q~~~~~~~~~~~~l~~~i~~i~~~t~~p~~~~g 323 (479) T protein:vir:99 252 QIRWATGLMLPEGANADQEK----MRF--AQESMLISQNEK--ASFGAIPAAPLDGLLNAYKESLLEFLALAQLPPHIAG 323 (479) T ss_pred hhhhhcCCCcccccccchhc----ccc--ccccceeecCCC--ceEEEecccchHHHHHHHHHHHHHHhccCCCCHHHcc Confidence 55555321111111111100 110 000111122232 344443 356799999999999999999999999998 Q ss_pred cCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHH Q lcl|Aclame:pro 380 FDGRSMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFY 459 (517) Q Consensus 380 ~~~~~~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~ 459 (517) .. +..||.+++++...+..++..+++.|..+|+++++.++.+... ........+++.|.+..+++..+.++.+ T Consensus 324 ~~--~n~Sg~Al~~~~~~l~~ka~~~~~~f~~al~~~~~l~~~~~~~-----~~~~~~~~i~~~w~~~~~~s~~~~ad~~ 396 (479) T protein:vir:99 324 QI--VNVAADALAAGTRQTMQKLFEKQATWKASHNQTMRLVNKIEGR-----TEEATDLDFTITWQDVTIQSLAQFADAW 396 (479) T ss_pred cc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----CccccceeeeEEecCCCCCCHHHHHHHH Confidence 53 4468999999999999999999999999999999998765421 1123456799999999999999999999 Q ss_pred HHHHhcCCCCHHHHHHhhCCCCHHHHHHHHHHHHHhcc------ccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 460 GQAKTFGFIPTVEAIQRIFKVPKKTAEQWLEEIRKDQI------ELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 460 ~~~~~~G~~S~~~~l~~~~~~~eeea~~el~~i~~E~~------~~~~~~~~~~~~~~~~G~ee 517 (517) .+++++|++|.++++..++|+++++++++.++.+++++ ..........+..+..|.++ T Consensus 397 ~kl~~ag~is~et~l~~l~gv~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (479) T protein:vir:99 397 AKMVESLKIPAEGVWDMIPNLDQSTVNGWKEIYDREGDFGKYMRKLQNGPDPAEQRGGPNGATN 460 (479) T ss_pred HHHHhcCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccccCCCCCCCC Confidence 99999999999999988889998876543222221110 00011111111111112222 No 60 >protein:vir:7987 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:151 # MgeName: Che8 # Cross-refs: genbank:acc:NP_817341;genbank:gi:29565769;genbank:GeneID:1258964 Probab=100.00 E-value=4.5e-42 Score=247.26 Aligned_cols=446 Identities=11% Similarity=0.075 Sum_probs=278.3 Q ss_pred HHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCccccc-ccccCcccc-ccccccChHHHHHHHHhhhhcCCc Q lcl|Aclame:pro 14 GGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEY-INSQGKIQE-RDYMTLNLRKLSADVLSGLVFNEQ 91 (517) Q Consensus 14 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~-~~~~~~~~~-~~~~~ln~~~~i~~~~A~ll~~e~ 91 (517) |.+.-.-..++.+..+. .....++.+.++||.|+++.... +......+. .++.++|+|+.|+..+++++++++ T Consensus 1 ~~~~t~~~~~~~l~~~~-----~~~~~r~~~l~~Yy~g~~~i~~~~~~~~~~~~~~~~~~~~n~~~~ivd~~~~~l~~~g 75 (456) T protein:vir:79 1 MTASTPAEWLPVLTKRI-----DDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNG 75 (456) T ss_pred CCCCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHhccCChhhcCcccChhhchhhhhhhcchHHHHHHHHHhhhccCC Confidence 11000000111111110 12345778888999999764211 111112222 234567999999999999999998 Q ss_pred ceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe-CCeeEEEEEcCCeEEEEEEcC Q lcl|Aclame:pro 92 CEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD-NGEIEFSWALANAFYPLRSNS 170 (517) Q Consensus 92 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d-~g~~~i~~v~a~~~~P~~~~~ 170 (517) .++...+. ...++.+++++++|+|.....+++..++.+|.+|+.+|.+ +|.+++.+++|.+++|++.+. T Consensus 76 ~~~~~~~d----------~~~~~~~~~~~~~n~~d~~~~~~~~~a~~~G~a~~~~~~~edg~~~i~~~~p~~~~~i~d~~ 145 (456) T protein:vir:79 76 ITVGGSAD----------SDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPL 145 (456) T ss_pred eecCCCCC----------ccHHHHHHHHHHhcChhHHHHHHHHHHhhcCeeEEEEeeCCCCceEEEEeccceeEEEEcCC Confidence 77654331 1234567888899999999999999999999999999987 688999999999999987654 Q ss_pred C-ceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccccCCC-CcceEEcCC Q lcl|Aclame:pro 171 N-GISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEGM-QEKTYIQGL 248 (517) Q Consensus 171 ~-~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l-~~~~~~~g~ 248 (517) . +...+++.++. ..++...+++ .+...+ ..+|+.....+...+. ..+......+ +....-+++ T Consensus 146 ~~~~~~~~~~~~~--~~d~~~~~~~---~~~~~~----~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 210 (456) T protein:vir:79 146 QPWRIRSAMRWWR--DLDAESDFAI---VWSGDG----WQKFARPCFVQSSSRR------RLVTRISDSWVPVGDAVVTG 210 (456) T ss_pred CCCceEEEEEEEE--ecCCceeEEE---EEcCCc----eEEEEEEEEeeccccc------eeeeccCCceeecccccCCC Confidence 3 34555544332 2222222221 111111 1112222122211110 0011001111 111234567 Q ss_pred CcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHh-ccceeecchH---HhccCCCCcccccCcc Q lcl|Aclame:pro 249 SRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKM-GQRTVFVSDV---MLRTVPDESGMPPPQV 324 (517) Q Consensus 249 ~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~-~~~~i~v~~~---~l~~~~~~~~~~~~~~ 324 (517) ++|++++|.| +.|+|+|++++++||++|.+.|+..++.+. +-+..++... +...+..|+....... T Consensus 211 ~~~pvv~~~N----------~~~~gd~e~v~~liD~~~~~~s~~~~~~~~~a~~~~~~~G~~~~~~~~d~~g~~i~~~~~ 280 (456) T protein:vir:79 211 SPPPVVVYQN----------PDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSSEHRLPKVDENGNAIDYASI 280 (456) T ss_pred CceeEEEecC----------CCCCchhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCcccccccccccccchhhh Confidence 8899988742 568999999999999999999999888753 3333333211 1111222222111111 Q ss_pred CCcccceeeeecCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 325 FDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVSENDLTYRTRND 404 (517) Q Consensus 325 fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a~~~~~~~t~~~ 404 (517) |..... .+-..+++..+..+ ++...+.|.+.++.++++|...+++++..|+... +..||.+++++...+.++++. T Consensus 281 ~~~~~~---~~~~~~~~~~~~q~-~~~~~~~~~~~l~~~i~~i~~~t~~p~~~~~~~~-~N~Sg~Al~~~~~~l~~k~~~ 355 (456) T protein:vir:79 281 FEAAPG---ALWELPPGVDIWES-QTNDFTPMLSAIKEHIRQLSSATKTPLPMLMPDS-ANQSAEGAHNIEKGFLFKCED 355 (456) T ss_pred hhhhcc---ccccCCCCcceeee-cccChHHHHHHHHHHHHHHHhhcCCChhHhcccc-cCcHHHHHHHHHHHHHHHHHH Confidence 221111 11111222333333 2446688999999999999999999999998554 345899999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCCHHHHHHhhCCCCHHH Q lcl|Aclame:pro 405 HVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTVEAIQRIFKVPKKT 484 (517) Q Consensus 405 ~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~~~l~~~~~~~eee 484 (517) +++.|+++|+++++.++.+. + . .....+.|.|.+..+++..++++.+++++++|++|.++++. ..|+++++ T Consensus 356 ~~~~f~~~l~~~~~l~~~~~------g-~-~~~~~i~v~w~~~~~~s~~~~ada~~kl~~~G~~~~~~~~~-~lg~~~~~ 426 (456) T protein:vir:79 356 RLSIAKIGLEAILVKALQIE------G-E-SVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRN-ILNYNADQ 426 (456) T ss_pred HHHHHHHHHHHHHHHHHHhc------C-C-CccccceEEeCCCCCcCHHHHHHHHHHHHhcCCChHHHHHh-cCCCCHHH Confidence 99999999999999887642 1 1 23457899999999999999999999999999999998764 66998876 Q ss_pred -HHHHHHHHHHhccccCCCCCccccCCCCCC Q lcl|Aclame:pro 485 -AEQWLEEIRKDQIELDPVTISQRAQKRMFG 514 (517) Q Consensus 485 -a~~el~~i~~E~~~~~~~~~~~~~~~~~~G 514 (517) +++|++|+++|......... +.++++..- T Consensus 427 i~~~e~~r~~~e~~~~~~~~~-~~~~~~~~~ 456 (456) T protein:vir:79 427 IKQDDLDRAREQITLFAGNPV-QRPQEDGSR 456 (456) T ss_pred HHHHHHHHHHHHHHHHhhhHh-hcCCCCCCC Confidence 45678888887654321111 111211111 No 61 >protein:vir:2500 Length: 501 # NCBI annotation: putative portal gp5 # Family: family:all:524 # MgeID: mge:53 # MgeName: TM4 # Cross-refs: genbank:acc:NP_569741;genbank:gi:18496891;genbank:GeneID:932330 Probab=100.00 E-value=7e-41 Score=240.74 Aligned_cols=454 Identities=10% Similarity=0.051 Sum_probs=275.5 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccc-cccccCccccc-cccccChHHH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVE-YINSQGKIQER-DYMTLNLRKL 78 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~-~~~~~~~~~~~-~~~~ln~~~~ 78 (517) +---+.+..+++++..... ....|+.+..+||.|+++... .+......+.. ++.++|+|+. T Consensus 22 ~~~~~~~~~l~~~l~~~~~-----------------~~~~rl~~l~~YY~G~~~~~~~~~~~~~~~~~~~~~~v~n~~~~ 84 (501) T protein:vir:25 22 SMSREQLGALVADMWRLHI-----------------SERQWLDRIYEYTKGLRGRPEVPEGASDEVKELAKLSVKNVLSL 84 (501) T ss_pred cCChHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHhcCCCchhccccCChhhhhhHhhhhcChHHH Confidence 1112222222222111100 123466777789999976321 11111121221 2345699999 Q ss_pred HHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeCCeeEEEEE Q lcl|Aclame:pro 79 SADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDNGEIEFSWA 158 (517) Q Consensus 79 i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~g~~~i~~v 158 (517) |++.+|++|+- ..+++++.. .++.++++.+.|+|.....+++..|+.+|.+|+.+|.+...++|.++ T Consensus 85 ivd~~a~~l~~--~gf~~~d~~-----------~~~~l~~i~~~N~~d~~~~~~~~~a~i~G~ay~~v~~de~~~~i~~~ 151 (501) T protein:vir:25 85 VRDSFAQNLSV--VGYRNALAK-----------ENDPAWEMWQRNRMDARQAEVHRPALTYGASYVTVTPTDEGPVFRTR 151 (501) T ss_pred HHHHHHhhhcc--cceecCCcc-----------chHHHHHHHHhcChhHHHHHHHHHHhhcCceEEEEecCCCCCeEEEe Confidence 99999998864 456665432 23557788889999999999999999999999999998777889999 Q ss_pred cCCeEEEEEEcCC--ceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEE-EEEEeecCCccccCccccccc- Q lcl|Aclame:pro 159 LANAFYPLRSNSN--GISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVI-TNELYKSDNEGEIGKRIPLEE- 234 (517) Q Consensus 159 ~a~~~~P~~~~~~--~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I-~n~ly~~~~~~~lG~~v~l~~- 234 (517) +|.++++++.|.. +...+++.+.......+.. ++.+++.... .|+. .+.++............+.+. T Consensus 152 sp~~~~~iy~D~~~~~~~~~ai~~~~~~~~~~~~---~~~~~y~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (501) T protein:vir:25 152 SPRQILAVYADPSVDAWPQYALETWVAQKDAKPH---RRGVLYDDTY------MYELDLGEVVLGDAGGGQATQQPVNVR 222 (501) T ss_pred ccccEEEEEecCCCCcceeEEEEEEeeccccCcc---eeEEEecCee------EEEEecCceeeeecccccccccccccc Confidence 9999999876532 2334444333222222221 1122222111 0111 111111111100001111111 Q ss_pred -ccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHh-ccceeecchHHhcc Q lcl|Aclame:pro 235 -LYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKM-GQRTVFVSDVMLRT 312 (517) Q Consensus 235 -~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~-~~~~i~v~~~~l~~ 312 (517) +..........++++..|++.|+ |+.. ..++|+|+|+.+++|+|++|.+.|++.+..+. +-+..++ +.. T Consensus 223 ~~~~~~~~~~~~~~~~~vPiv~f~----N~~~-~~~~g~sdie~v~~l~Da~~~~~s~~~~~~e~~a~p~~~i----~G~ 293 (501) T protein:vir:25 223 EVTDVIEHGATFEGKPVCPVVRFV----NGRD-ADDMIVGEVAPLILLQQAINSVNFDRLIVSRFGANPQRVI----SGW 293 (501) T ss_pred ccccccccccccCCccceeeEecc----Cccc-cCccccchhhhhHHHHHHHHHHHHHHHHHHHhhccHHHHH----hCC Confidence 11112222344677888888875 4433 35789999999999999999999999998863 3333333 111 Q ss_pred CCCCcccccCccCCcccceeeeecCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHHH Q lcl|Aclame:pro 313 VPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIV 392 (517) Q Consensus 313 ~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~ 392 (517) .. .....|..... +.+..++++..+.++ +...++.|.+.++.++++|+..+++++.+|+... +..+|.+++ T Consensus 294 ~~-----~~~~~~~~~~~--~i~~~~~~~~~~~q~-~~~~~~~~~~~l~~~i~~i~~~s~~P~~~~~~~~-~N~Sg~Al~ 364 (501) T protein:vir:25 294 TG-----SKAEVLKASAL--RVWTFEDPEVKAQAF-PPASVEPYNLILEEMLQHVAMVAQISPAQVTGKM-INVSAEALA 364 (501) T ss_pred CC-----Cccchhhhccc--ceeccCCCCceEEEe-cccChHHHHHHHHHHHHHHHhhcCCChhhhcccc-CChHHHHHH Confidence 11 11111221111 111222333333322 3345688999999999999999999999998443 345899999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCCHHH Q lcl|Aclame:pro 393 SENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTVE 472 (517) Q Consensus 393 a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~~ 472 (517) ++...|.+++..+++.|+.+|.++++.++.+... ........+++.|.+..+.+..+.++.+.+++++|+ |.++ T Consensus 365 ~~~~~l~~ka~~k~~~f~~~l~~~~rl~~~~~~~-----~~~~~~~~i~v~w~~~~~~s~~~~ada~~kl~~~gi-s~et 438 (501) T protein:vir:25 365 AAEANQQRKLAAKRESFGESWEQLLRLAAEMDDD-----PDTAADSGAEVLWRDTEARSFGAVVDGITKLASAGI-PIEH 438 (501) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CccccceeeeEEecCCCCCCHHHHHHHHHHHHhcCC-CHHH Confidence 9999999999999999999999999988765431 122345679999999999999999999999998885 9999 Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhcccc--C-CCCCccccCCCCCCCCC Q lcl|Aclame:pro 473 AIQRIFKVPKKTAEQWLEEIRKDQIEL--D-PVTISQRAQKRMFGDEE 517 (517) Q Consensus 473 ~l~~~~~~~eeea~~el~~i~~E~~~~--~-~~~~~~~~~~~~~G~ee 517 (517) .+.+++|+++++++++.++.+++++.. + ....+..+.....++++ T Consensus 439 ~~~~~~g~~~~~ie~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (501) T protein:vir:25 439 LLSMVPGMTQQTIQAIKDSLRGGEVKSLVDKLLSNEPAPVPPPPPQAA 486 (501) T ss_pred HHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHhhccCcCCCCCCCCCCC Confidence 999999999988766655544443310 0 00111111111111111 No 62 >protein:vir:102602 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:1661 # MgeName: Llij # Cross-refs: genbank:acc:YP_654999;genbank:gi:109392189;genbank:GeneID:4157224 Probab=100.00 E-value=6.5e-41 Score=240.89 Aligned_cols=445 Identities=10% Similarity=0.052 Sum_probs=276.8 Q ss_pred HHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCccccccccc--Ccccc-ccccccChHHHHHHHHhhhhcCC Q lcl|Aclame:pro 14 GGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQ--GKIQE-RDYMTLNLRKLSADVLSGLVFNE 90 (517) Q Consensus 14 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~--~~~~~-~~~~~ln~~~~i~~~~A~ll~~e 90 (517) |.+.-..+.++.+..+. .....|+.+..+||.|+++ +.+.... ...+. .++...|+|+.|+..+++++++. T Consensus 1 ~~~~t~~~~~~~l~~~~-----~~~~~r~~~l~~Yy~g~~~-i~~~~~~~~~~~~~~~~k~~~n~~~~ivd~~~~~l~~~ 74 (456) T protein:vir:10 1 MTASTPAEWLPVLTKRI-----DDGMSRVRLLARYSNGDAP-LPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPN 74 (456) T ss_pred CCCCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHhcCCC-chhcCcccChhhhhhhhhhhcchHHHHHHHHHhhhccC Confidence 11110001111111110 1234677888899999975 3222111 11111 34567899999999999999999 Q ss_pred cceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe-CCeeEEEEEcCCeEEEEEEc Q lcl|Aclame:pro 91 QCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD-NGEIEFSWALANAFYPLRSN 169 (517) Q Consensus 91 ~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d-~g~~~i~~v~a~~~~P~~~~ 169 (517) +.++..++. ....+.++++++.|+|.....+++..|+.+|.+|..+|.| +|.++|.+++|.+++|++.+ T Consensus 75 ~~~~~~~~d----------~~~~~~~~~i~~~N~~d~~~~~~~~~a~i~G~ay~~v~~d~~g~~~i~~~~p~~~~~i~d~ 144 (456) T protein:vir:10 75 GITVGGSAD----------SDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDP 144 (456) T ss_pred CeecCCCCC----------cchHHHHHHHHHhcChhhHHHHHHHHHhhcCeeEEEEeeCCCCceEEEEEccceeEEEEcC Confidence 877644321 1123457788888999999999999999999999999887 58899999999999998654 Q ss_pred CC-ceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccc-cccCCCCcceEEcC Q lcl|Aclame:pro 170 SN-GISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLE-ELYEGMQEKTYIQG 247 (517) Q Consensus 170 ~~-~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~-~~~~~l~~~~~~~g 247 (517) .. +...+++.++. ..++...+.+ ++...+ ..+|++....+...+.. ..+.. ..|. .....-++ T Consensus 145 ~~~~~~~~~i~~~~--~~d~~~~~~~--~~~~~~-----~~~~~~~~~~~~~~~~~----~~~~~~~~~~--~~~~~~~~ 209 (456) T protein:vir:10 145 LQPWRIRAAMRWWR--DLDAESDFAI--VWSGDG-----WQKFARPCFVQSSSRRR----LVTRISDSWV--PVGDAVVT 209 (456) T ss_pred CCCcceEEEEEEEE--ecCCceeEEE--EEeccc-----eeEEEEEEEEeecccce----eeeecCCcee--eccccCCC Confidence 44 34444444332 2233332222 221111 01122222222211110 00000 0010 01112245 Q ss_pred CCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHH-hccceeecch---HHhccCCCCcccccCc Q lcl|Aclame:pro 248 LSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIK-MGQRTVFVSD---VMLRTVPDESGMPPPQ 323 (517) Q Consensus 248 ~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~-~~~~~i~v~~---~~l~~~~~~~~~~~~~ 323 (517) +++|+++++.| +.|+|+|+.+++++|++|.+.|+.++..+ .+-+..++.. +....+..++...... T Consensus 210 ~~~~pvv~~~N----------~~g~gd~e~vi~liDa~~~~~s~~~~~~~~~a~~~~~i~G~~~~~~~~d~~g~~~~~~~ 279 (456) T protein:vir:10 210 GSPPPVVVYQN----------PDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYAS 279 (456) T ss_pred CCceeEEEecC----------CCCCchhhhhHHHHHHHHHHHHHHHHHHHHhhhHhHhhhccCcccccccccccccchhh Confidence 67888887733 46999999999999999999999988875 3333333321 1111122222111111 Q ss_pred cCCcccceeeeecCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 324 VFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVSENDLTYRTRN 403 (517) Q Consensus 324 ~fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a~~~~~~~t~~ 403 (517) .|...... +-..+++..+..++ .-..+.|.+.++.++++|...+++++..||... +..||.+++++...+.+++. T Consensus 280 ~~~~~~~~---~~~~~~~~~~~q~~-~~~~~~~~~~l~~~i~~~~~~s~~p~~~~~~~~-~N~Sg~Ai~~~~~~l~~k~~ 354 (456) T protein:vir:10 280 IFEAAPGA---LWELPPGVDIWESQ-ANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDS-ANQSAEGAHNIEKGFLFKCE 354 (456) T ss_pred hhhhhccc---cccCCCCcceEEec-ccChhHHHHHHHHHHHHHHhccCCChHHhcccc-cChHHHHHHHHHHHHHHHHH Confidence 12211111 11112333343333 345688999999999999999999999998654 34589999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCCHHHHHHhhCCCCHH Q lcl|Aclame:pro 404 DHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTVEAIQRIFKVPKK 483 (517) Q Consensus 404 ~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~~~l~~~~~~~ee 483 (517) .+++.|+.+|.++++.++.+. + ......+.|.|.+..++|..+.++.+++++++|++|.++++ .++|++++ T Consensus 355 ~~~~~f~~~l~~~~rl~~~~~------g--~~~~~~~~v~w~~~~~~~~~~~ada~~kl~~~gi~~~~~~~-~~lg~~~~ 425 (456) T protein:vir:10 355 DRLSIAKIGLEAILVKALQIE------G--ESVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRR-NILNYNAD 425 (456) T ss_pred HHHHHHHHHHHHHHHHHHHhc------C--CCcccceeEEecCCCCcCHHHHHHHHHHHHHcCCChHHHHH-hhCCCCHH Confidence 999999999999999887542 1 12345799999999999999999999999999999998865 56799988 Q ss_pred HH-HHHHHHHHHhccccCCCCCccccCCCCC Q lcl|Aclame:pro 484 TA-EQWLEEIRKDQIELDPVTISQRAQKRMF 513 (517) Q Consensus 484 ea-~~el~~i~~E~~~~~~~~~~~~~~~~~~ 513 (517) ++ ++|++|+++|+........+....++.- T Consensus 426 ~i~~~e~er~~~e~~~~~~~~~~~~~~~~~~ 456 (456) T protein:vir:10 426 QIKQDDLDRAREQITLFAGNPVQRPQEDGSR 456 (456) T ss_pred HHHHHHHHHHHHHHHHHhhhhhhcCCCCCCC Confidence 75 4678888887654322222221111111 No 63 >protein:vir:105819 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:1636 # MgeName: PMC # Cross-refs: genbank:acc:YP_655764;genbank:gi:109522087;genbank:GeneID:4157627 Probab=100.00 E-value=6.5e-41 Score=240.89 Aligned_cols=445 Identities=10% Similarity=0.052 Sum_probs=276.8 Q ss_pred HHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCccccccccc--Ccccc-ccccccChHHHHHHHHhhhhcCC Q lcl|Aclame:pro 14 GGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQ--GKIQE-RDYMTLNLRKLSADVLSGLVFNE 90 (517) Q Consensus 14 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~--~~~~~-~~~~~ln~~~~i~~~~A~ll~~e 90 (517) |.+.-..+.++.+..+. .....|+.+..+||.|+++ +.+.... ...+. .++...|+|+.|+..+++++++. T Consensus 1 ~~~~t~~~~~~~l~~~~-----~~~~~r~~~l~~Yy~g~~~-i~~~~~~~~~~~~~~~~k~~~n~~~~ivd~~~~~l~~~ 74 (456) T protein:vir:10 1 MTASTPAEWLPVLTKRI-----DDGMSRVRLLARYSNGDAP-LPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPN 74 (456) T ss_pred CCCCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHhcCCC-chhcCcccChhhhhhhhhhhcchHHHHHHHHHhhhccC Confidence 11110001111111110 1234677888899999975 3222111 11111 34567899999999999999999 Q ss_pred cceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe-CCeeEEEEEcCCeEEEEEEc Q lcl|Aclame:pro 91 QCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD-NGEIEFSWALANAFYPLRSN 169 (517) Q Consensus 91 ~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d-~g~~~i~~v~a~~~~P~~~~ 169 (517) +.++..++. ....+.++++++.|+|.....+++..|+.+|.+|..+|.| +|.++|.+++|.+++|++.+ T Consensus 75 ~~~~~~~~d----------~~~~~~~~~i~~~N~~d~~~~~~~~~a~i~G~ay~~v~~d~~g~~~i~~~~p~~~~~i~d~ 144 (456) T protein:vir:10 75 GITVGGSAD----------SDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDP 144 (456) T ss_pred CeecCCCCC----------cchHHHHHHHHHhcChhhHHHHHHHHHhhcCeeEEEEeeCCCCceEEEEEccceeEEEEcC Confidence 877644321 1123457788888999999999999999999999999887 58899999999999998654 Q ss_pred CC-ceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccc-cccCCCCcceEEcC Q lcl|Aclame:pro 170 SN-GISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLE-ELYEGMQEKTYIQG 247 (517) Q Consensus 170 ~~-~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~-~~~~~l~~~~~~~g 247 (517) .. +...+++.++. ..++...+.+ ++...+ ..+|++....+...+.. ..+.. ..|. .....-++ T Consensus 145 ~~~~~~~~~i~~~~--~~d~~~~~~~--~~~~~~-----~~~~~~~~~~~~~~~~~----~~~~~~~~~~--~~~~~~~~ 209 (456) T protein:vir:10 145 LQPWRIRAAMRWWR--DLDAESDFAI--VWSGDG-----WQKFARPCFVQSSSRRR----LVTRISDSWV--PVGDAVVT 209 (456) T ss_pred CCCcceEEEEEEEE--ecCCceeEEE--EEeccc-----eeEEEEEEEEeecccce----eeeecCCcee--eccccCCC Confidence 44 34444444332 2233332222 221111 01122222222211110 00000 0010 01112245 Q ss_pred CCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHH-hccceeecch---HHhccCCCCcccccCc Q lcl|Aclame:pro 248 LSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIK-MGQRTVFVSD---VMLRTVPDESGMPPPQ 323 (517) Q Consensus 248 ~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~-~~~~~i~v~~---~~l~~~~~~~~~~~~~ 323 (517) +++|+++++.| +.|+|+|+.+++++|++|.+.|+.++..+ .+-+..++.. +....+..++...... T Consensus 210 ~~~~pvv~~~N----------~~g~gd~e~vi~liDa~~~~~s~~~~~~~~~a~~~~~i~G~~~~~~~~d~~g~~~~~~~ 279 (456) T protein:vir:10 210 GSPPPVVVYQN----------PDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYAS 279 (456) T ss_pred CCceeEEEecC----------CCCCchhhhhHHHHHHHHHHHHHHHHHHHHhhhHhHhhhccCcccccccccccccchhh Confidence 67888887733 46999999999999999999999988875 3333333321 1111122222111111 Q ss_pred cCCcccceeeeecCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 324 VFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVSENDLTYRTRN 403 (517) Q Consensus 324 ~fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a~~~~~~~t~~ 403 (517) .|...... +-..+++..+..++ .-..+.|.+.++.++++|...+++++..||... +..||.+++++...+.+++. T Consensus 280 ~~~~~~~~---~~~~~~~~~~~q~~-~~~~~~~~~~l~~~i~~~~~~s~~p~~~~~~~~-~N~Sg~Ai~~~~~~l~~k~~ 354 (456) T protein:vir:10 280 IFEAAPGA---LWELPPGVDIWESQ-ANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDS-ANQSAEGAHNIEKGFLFKCE 354 (456) T ss_pred hhhhhccc---cccCCCCcceEEec-ccChhHHHHHHHHHHHHHHhccCCChHHhcccc-cChHHHHHHHHHHHHHHHHH Confidence 12211111 11112333343333 345688999999999999999999999998654 34589999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCCHHHHHHhhCCCCHH Q lcl|Aclame:pro 404 DHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTVEAIQRIFKVPKK 483 (517) Q Consensus 404 ~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~~~l~~~~~~~ee 483 (517) .+++.|+.+|.++++.++.+. + ......+.|.|.+..++|..+.++.+++++++|++|.++++ .++|++++ T Consensus 355 ~~~~~f~~~l~~~~rl~~~~~------g--~~~~~~~~v~w~~~~~~~~~~~ada~~kl~~~gi~~~~~~~-~~lg~~~~ 425 (456) T protein:vir:10 355 DRLSIAKIGLEAILVKALQIE------G--ESVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRR-NILNYNAD 425 (456) T ss_pred HHHHHHHHHHHHHHHHHHHhc------C--CCcccceeEEecCCCCcCHHHHHHHHHHHHHcCCChHHHHH-hhCCCCHH Confidence 999999999999999887542 1 12345799999999999999999999999999999998865 56799988 Q ss_pred HH-HHHHHHHHHhccccCCCCCccccCCCCC Q lcl|Aclame:pro 484 TA-EQWLEEIRKDQIELDPVTISQRAQKRMF 513 (517) Q Consensus 484 ea-~~el~~i~~E~~~~~~~~~~~~~~~~~~ 513 (517) ++ ++|++|+++|+........+....++.- T Consensus 426 ~i~~~e~er~~~e~~~~~~~~~~~~~~~~~~ 456 (456) T protein:vir:10 426 QIKQDDLDRAREQITLFAGNPVQRPQEDGSR 456 (456) T ss_pred HHHHHHHHHHHHHHHHHhhhhhhcCCCCCCC Confidence 75 4678888887654322222221111111 No 64 >protein:vir:98444 Length: 434 # NCBI annotation: hypothetical protein # Family: family:all:5096 # MgeID: mge:1589 # MgeName: VWB # Cross-refs: genbank:acc:NP_958276;genbank:gi:41057250;genbank:GeneID:2732828 Probab=100.00 E-value=5.1e-39 Score=230.50 Aligned_cols=413 Identities=10% Similarity=-0.006 Sum_probs=259.0 Q ss_pred cccccccCcccc-ccccccChHHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHH Q lcl|Aclame:pro 56 VEYINSQGKIQE-RDYMTLNLRKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLE 134 (517) Q Consensus 56 ~~~~~~~~~~~~-~~~~~ln~~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~ 134 (517) +-+.+.....+. .++.++|+|+.|+..++++|+. ..+++++.. .++.+++++++|+|.....+++. T Consensus 1 ~l~~~~~~~~~~~~~~~v~n~~~~ivd~~~~~l~~--~gf~~~d~~-----------~~~~~~~i~~~N~~d~~~~~~~~ 67 (434) T protein:vir:98 1 MLPKNAEQAFLDFQRKARTNFCGLIANASVHRLLA--LGVTGPDGE-----------PDTRASRWWQANRLDSRQKLVWR 67 (434) T ss_pred CCCCCccHHHHHhhhhhhccchHHHHHHHHhhhcc--CceecCCCc-----------hHHHHHHHHHhcChhHHHHHHHH Confidence 111111111111 2234679999999999998864 356665432 34668888999999999999999 Q ss_pred HHHhhCCEEEEEEEeCC--------eeEEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceee Q lcl|Aclame:pro 135 PTFALGGLTVRPYVDNG--------EIEFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEE 206 (517) Q Consensus 135 ~a~~~G~~~~k~~~d~g--------~~~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~ 206 (517) .|+.+|.+|+.+|.+.+ .+.|.+++|.++++++.+..+...+++.++... .+ ...+..+.++.. T Consensus 68 ~a~i~G~ay~~v~~~~~~~~~~~~~~~~I~~~~p~~~~~i~D~~~~~~~~ai~~~~~~--~~-~~~~~~~~~~~~----- 139 (434) T protein:vir:98 68 MAMAQSAGYMLVGAHPTRTEDNGRPSPLITMEHPSECIVEYDPETGEPLVGLKVWHND--ID-GFGYARVFFDDT----- 139 (434) T ss_pred HHhhcCceEEEEecCCCcccccCCceeEEEEeccceeEEEEeCCCCceEEEEEEEEec--cC-CceEEEEEEeCc----- Confidence 99999999999997632 467999999999998765545555555433222 11 122222222110 Q ss_pred ccceEEEEEEEeecCCccccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHH Q lcl|Aclame:pro 207 GESLYVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKIN 286 (517) Q Consensus 207 ~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD 286 (517) . |+ + .++.... ..+...+...++....+....++++++|++.|+ |+...+. .|+|+|+.+++++|++| T Consensus 140 --~-~~--~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv~f~----N~~~~~~-~g~sd~e~vi~liDa~~ 207 (434) T protein:vir:98 140 --S-FP--Y-RTRERTG-ARLPWGPDSWVYTGTADSGDVHDLGGMQLVEFA----RMPDLGE-DPEPEFAGVLDIQDRVN 207 (434) T ss_pred --E-EE--E-EEeeccc-cccccccccceecccccccccCCCCccceEEec----cCCCcCc-CCcchhhhHHHHHHHHH Confidence 0 11 0 1111110 001111111122222334445788999999885 4444333 59999999999999999 Q ss_pred HHHHHHHHHHH-hccceeecchHHhccCCCCccccc--CccCCcccceeeeecCCCCCCcceEEec-ccChHHHHHHHHH Q lcl|Aclame:pro 287 DTYDQFWWEIK-MGQRTVFVSDVMLRTVPDESGMPP--PQVFDPDVNVYKSIRMGTDEEFVKDVTH-DIRTEQYKEAINQ 362 (517) Q Consensus 287 ~~~s~~~~e~~-~~~~~i~v~~~~l~~~~~~~~~~~--~~~fd~~~~~y~~~~~~~~~~~v~~~~~-dir~e~~~~~l~~ 362 (517) .++|+..+..+ .+.+..++...-+....+..+... ...|..... .+.. .++..+++.|. ....++|.+.|+. T Consensus 208 ~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~-~~~~~~~~~q~~~~~~~~~~~~l~~ 283 (434) T protein:vir:98 208 LGILNRMAASRFSGFRQKWIKGHKFAKRTDPATGMTVVDQPFVPSPS---AVWA-SEGENTQFGQLDATDLSGFLKEHAS 283 (434) T ss_pred HHHHHHHHHHHHhcchhhhhcCCCcccccccccccchhhhhhhcccc---cccc-CCCCCceEEEecCcchHHHHHHHHH Confidence 99999999986 566666653211111111111110 001111100 0111 12223444453 4467899999999 Q ss_pred HHHHHHHHhCCCccccccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEE Q lcl|Aclame:pro 363 ALRTLEMELKLSVGTFSFDGRSMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGV 442 (517) Q Consensus 363 ~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i 442 (517) ++++|+..+++++..|+. ..+..+|.+++++...|.+++..+++.|+.+|+++++.++.+. +.......+.+ T Consensus 284 ~i~~~~~~~~~p~~~~~~-~~~n~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~rl~~~~~-------g~~~~~~~~~v 355 (434) T protein:vir:98 284 DVRDMLTISQTPTYLYAT-DLVNISADTIGALDILHVAKVREHIASFSEGLESVLALAAAQA-------GVPEDYTEAEV 355 (434) T ss_pred HHHHHhcccCCCHHHhcc-ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCChhheeeeE Confidence 999999999999999984 3456789999999999999999999999999999999877542 23345667999 Q ss_pred EeCCCccCCHHHHHHHHHHHHhcCCCCHHHHHHhhCCCCHHHHHHHHHHHHHhcc--------ccCCCCCccccCCCCCC Q lcl|Aclame:pro 443 DFDDGVFQDRSALLRFYGQAKTFGFIPTVEAIQRIFKVPKKTAEQWLEEIRKDQI--------ELDPVTISQRAQKRMFG 514 (517) Q Consensus 443 ~f~d~i~~d~~~~~~~~~~~~~~G~~S~~~~l~~~~~~~eeea~~el~~i~~E~~--------~~~~~~~~~~~~~~~~G 514 (517) .|.+..+++..++++.+.+++++|+ |.++ +..+.|++++|.++..++..++.. ..+|..+ ..++.+... T Consensus 356 ~w~~~~~~s~~~~ada~~kl~~~g~-~~e~-~~~~lg~~~~e~~r~~~e~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~ 432 (434) T protein:vir:98 356 RWANPAHVTMAVKADAATKLKSIGY-PLDV-IAEELDESPARVRRIVAGAASQALLAASLLPAPGAPSAG-NVPDSGGAV 432 (434) T ss_pred EecCCCCCCHHHHHHHHHHHHhcCC-cHHH-HHHhCCCCHHHHHHHHHHHHHHHHHHHhhhccCCCCCCC-CCCcccCCC Confidence 9999999999999999999998775 7765 556779998876655555433211 1122211 122222111 Q ss_pred CC Q lcl|Aclame:pro 515 DE 516 (517) Q Consensus 515 ~e 516 (517) |- T Consensus 433 dg 434 (434) T protein:vir:98 433 DG 434 (434) T ss_pred CC Confidence 11 No 65 >protein:vir:99916 Length: 504 # NCBI annotation: gp3 # Family: family:all:524 # MgeID: mge:1611 # MgeName: Halo # Cross-refs: genbank:acc:YP_655520;genbank:gi:109392290;genbank:GeneID:4157085 Probab=100.00 E-value=3.5e-37 Score=220.44 Aligned_cols=449 Identities=11% Similarity=0.051 Sum_probs=275.2 Q ss_pred HHHHhhcccchhhhccccCcCCHH--------------HHHHHHHHHHHhcCCCccccccccc-CccccccccccChHHH Q lcl|Aclame:pro 14 GGYALSGQTLKSINDHEKINIDPN--------------ELARIERNLRQYEGDYPQVEYINSQ-GKIQERDYMTLNLRKL 78 (517) Q Consensus 14 ~~~~~~~~~~~~~~~~~~i~~~~~--------------~~~~i~~~~~~Y~g~~~~~~~~~~~-~~~~~~~~~~ln~~~~ 78 (517) |.. +.. +....+- .-..++++ ...++.+..+||.|+++ +.+.... ....++....+|+|+. T Consensus 1 ~~~-~~~-~~~~~~~-~~~~l~~~e~~~i~~L~~~~~~~~~r~~~l~~YY~G~~~-i~~~~~~~p~~~~~~~~v~n~~~~ 76 (504) T protein:vir:99 1 MTE-ETT-SASKFTF-RIPELNDDVVDKVNGLYQQLVDRTPRNLLRASFYDGKYA-IRQIGNLIPPEYLRTATVLGWSAK 76 (504) T ss_pred CCc-cCC-ccccccc-ccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccc-chhccccccHHHHHHhhccCcHHH Confidence 111 000 0000000 00112222 23355666789999975 3332211 1111233456899999 Q ss_pred HHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeC-C--eeEE Q lcl|Aclame:pro 79 SADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDN-G--EIEF 155 (517) Q Consensus 79 i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~-g--~~~i 155 (517) |+..+|+.|+-+ .+.+++. +..++.|+++.+.|+|.....+++..|+.+|.+++.+|-+. | .+.| T Consensus 77 iVd~~a~rl~~~--Gf~~~d~----------~~~~~~l~~i~~~N~ld~~~~~~~~~a~iyG~af~~v~~~~d~~~~~~I 144 (504) T protein:vir:99 77 AVDTLARRCNLE--SFVWPDG----------DYGSIGGPDVWDENFFATKANNAMVSSLIHGPAFLINTEGGAGEPDSLI 144 (504) T ss_pred HHHHHHhhhccc--eeeCCCC----------ChhhHHHHHHHHhcChhhHHHHHHHHHHhhCceeEEEecCCCCCceeEE Confidence 999999988654 4555432 12345678888999999999999999999999999988763 3 4679 Q ss_pred EEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccc Q lcl|Aclame:pro 156 SWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEEL 235 (517) Q Consensus 156 ~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~ 235 (517) .+++|.+++.++.+..+...+++.+... ..++ .++..++|..+.+ |+ |...+. |... T Consensus 145 ~~~sP~~~~~iyD~~~~~~~~a~~~~~~--d~~g--~~~~~~~y~~~~~------~~-----~~~~~~---~~~~----- 201 (504) T protein:vir:99 145 HVKSAMQATGEWNSRRNAMDSLLSITSR--DAEG--HPTGIALYEDGVT------VT-----ADMDDD---GDWH----- 201 (504) T ss_pred EEeccceeEEEEeCCCCceeEEEEEEEe--cCCC--eEEEEEEEcCCcE------EE-----EEEcCC---ceee----- Confidence 9999999999876555665566554333 2222 3455666665421 11 111111 1100 Q ss_pred cCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhh-hhHHHHHHHHHHHHHHHHHHH-hccceeecchHHhcc- Q lcl|Aclame:pro 236 YEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITD-NSVSTLKKINDTYDQFWWEIK-MGQRTVFVSDVMLRT- 312 (517) Q Consensus 236 ~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~-~~~~lid~lD~~~s~~~~e~~-~~~~~i~v~~~~l~~- 312 (517) .+. .-++++.| ++.| +|+.+...|+|+|++. .+++|+|++|+++++.....+ .+-+..++-.-.... T Consensus 202 -~~~----~~~~~gvP-vV~~----~n~~~~~~~~G~sei~~~v~~l~Da~~~~~~~~~~~~e~~a~p~r~i~G~~~~~~ 271 (504) T protein:vir:99 202 -ADV----RTHKLGVP-VEVL----PYKPREDRPLGSSRITRPVMSLQQRALKGCIRMDGHADVYSFPQLILLGADAKNF 271 (504) T ss_pred -ecc----ccCCCCcc-eEEe----cccccCccccCcccchhhHHHHHHHHHHHHHHHHHHHHHhcchhhhhccCCcccc Confidence 011 11223334 4544 4777788999999996 789999999999999998876 444444441100000 Q ss_pred -CCCCcccccCccCCcccceeeeecCCC-----CCCcceEEec-ccChHHHHHHHHHHHHHHHHHhCCCccccccCCC-c Q lcl|Aclame:pro 313 -VPDESGMPPPQVFDPDVNVYKSIRMGT-----DEEFVKDVTH-DIRTEQYKEAINQALRTLEMELKLSVGTFSFDGR-S 384 (517) Q Consensus 313 -~~~~~~~~~~~~fd~~~~~y~~~~~~~-----~~~~v~~~~~-dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~-~ 384 (517) +.++.+. ..|+........+..+. .+..+++.|. .-..+.|.+.|+.++++|+..+++++..||+.+. + T Consensus 272 ~~~d~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~q~~~~~l~~~~~~l~~~i~~~a~~t~~P~~~lG~~~~~n 348 (504) T protein:vir:99 272 RNKDGSMK---PAWQIALARVFALPDDEDEPDAARARADVKQFPASSPQPHIEMLEQIAMMFSGETSIPVESLGFSNRAN 348 (504) T ss_pred cccccccc---chhhhhhhhhhcCCCccccccccCccceeeecCCCChHHHHHHHHHHHHHHHhhhCCCHHHhccccccc Confidence 1111111 11221111111111111 1233444443 2356789999999999999999999999997654 6 Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHh Q lcl|Aclame:pro 385 MKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKT 464 (517) Q Consensus 385 ~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~ 464 (517) ..+|.++++....|.+++..+++.|..+|+++++.++.+... .+........+.+.|.|..+.+..+.++.+.++++ T Consensus 349 ~sSa~Ai~~~~~~L~~ka~~k~~~f~~~l~~~~rla~~~~~~---~~~~~~~~~~~~v~w~d~~~~s~a~~aDa~~Kl~~ 425 (504) T protein:vir:99 349 PTSADAYIASREDLIAEAEGATDDWSPAFRRSMIRALAIKNG---LDRIPPEWKTIDSKFRSPLYLSKAAQADAGAKMLG 425 (504) T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCccccccccceeEecCCCccCHHHHHHHHHHHHh Confidence 678999999999999999999999999999999998876542 23334456779999999999999999999999999 Q ss_pred cCC--CCHHHHHHhhCCCCHHHHHHHHHHHHHhcccc--------CCCCCccccCCCCCCCCC Q lcl|Aclame:pro 465 FGF--IPTVEAIQRIFKVPKKTAEQWLEEIRKDQIEL--------DPVTISQRAQKRMFGDEE 517 (517) Q Consensus 465 ~G~--~S~~~~l~~~~~~~eeea~~el~~i~~E~~~~--------~~~~~~~~~~~~~~G~ee 517 (517) +|. ++..+++..+.|++++|++++.++.+++++.+ ++...+...++...+.|. T Consensus 426 ag~~l~~~~~~l~~~lg~~~~ei~r~~~e~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~ 488 (504) T protein:vir:99 426 AGPEWLKETEVGLELLGLTPQQAKRALAERRRASSVSIIEALNRRQQEAATAGEDQDQGAGEP 488 (504) T ss_pred hccccccchHHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHHHhcccCCCCCCCCCCCcCCCCC Confidence 885 44556666777999998876665554433211 111000000000001110 No 66 >protein:vir:9568 Length: 410 # NCBI annotation: gp34 # Family: family:all:524 # MgeID: mge:171 # MgeName: SM1 # Cross-refs: genbank:acc:NP_862873;genbank:gi:32469465;genbank:GeneID:1461310 Probab=100.00 E-value=7.3e-34 Score=202.24 Aligned_cols=399 Identities=11% Similarity=0.047 Sum_probs=269.7 Q ss_pred hhccccCcCCHHHHHHHHHHHHHhcCCCcccccccc--cCccccccccccChHHHHHHHHhhhhcCCcceeEecCccccc Q lcl|Aclame:pro 26 INDHEKINIDPNELARIERNLRQYEGDYPQVEYINS--QGKIQERDYMTLNLRKLSADVLSGLVFNEQCEVYVSDAKDEE 103 (517) Q Consensus 26 ~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~--~~~~~~~~~~~ln~~~~i~~~~A~ll~~e~~~i~~~~~~~~~ 103 (517) +. -++.|..+..+||.|+++. .+... ....+.+.+..+|+|+.|+..+|+.+.-+ .++.++. T Consensus 1 l~---------~~~~r~~~~~~yY~g~~~~-~~~~~~~p~~~~~~~~~v~nw~~~~Vds~a~rl~~~--Gf~~~d~---- 64 (410) T protein:vir:95 1 MN---------LYQSRVNLRYKHYAMQHYE-APTGITIPAHIRAKYQAVLGWAAKGVDSLADRLIFR--AFANDDF---- 64 (410) T ss_pred CC---------cchhhHHHHHHHhcCCCCc-cccchhccHHHHhHHHhhcchhHHHHHHhHhhhccc--cccCCCc---- Confidence 11 2356888889999999643 22221 11122223456799999999999876543 3433221 Q ss_pred ccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe-CCeeEEEEEcCCeEEEEEEcCCceEEEEEEEEE Q lcl|Aclame:pro 104 KKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD-NGEIEFSWALANAFYPLRSNSNGISEGVMKSVT 182 (517) Q Consensus 104 ~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d-~g~~~i~~v~a~~~~P~~~~~~~~~~~a~~~~~ 182 (517) -++++.+.|+|.....+++..|+.+|.+++.+|-+ +|+++|.+++|.+++.++.+..+...+++.... T Consensus 65 -----------~l~~i~~~N~ld~~~~~~~~~al~~G~sf~~v~~~~d~~~~i~~~sP~~~~~i~Dp~~~~~~~al~~~~ 133 (410) T protein:vir:95 65 -----------NVTEIFDRNNPDIFFDSAILSALIGSCSFVYISKGEDDEVRLQVIESSNATGVIDPITGLLVEGYAVLA 133 (410) T ss_pred -----------hHHHHHhhcChHHHHHHHHHHHHHhCceeEEEecCCCCceEEEEEcccceEEEEeCCCCceEEEEEEEE Confidence 26677788999999999999999999999998875 578999999999999887655566665554322 Q ss_pred EEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccccCCCCcceEEcCCCcceEEEecCCccc Q lcl|Aclame:pro 183 TKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFN 262 (517) Q Consensus 183 ~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N 262 (517) ...++ ..+...+++.+. .++ |..... .| .+.+++++||++.| +| T Consensus 134 --~~~~~--~~~~~~~~~~~~------~~~-----~~~~~~-----------~~------~~~~~~g~vPvV~f----~n 177 (410) T protein:vir:95 134 --RDDYN--RPTLEAYFEPNA------THF-----IPKDGE-----------PY------SVTNETGIPLLVPV----IH 177 (410) T ss_pred --ecCCC--eEEEEEEEeCCc------EEE-----EeeCCc-----------cc------cccCCCCCcceEEe----cc Confidence 22222 233333443321 111 221110 01 12367788888877 46 Q ss_pred cccCCCCCCcchh-hhhHHHHHHHHHHHHHHHHHHH-hccceeecchHHhccCCCCcccccCccCCcccceeeeecCCCC Q lcl|Aclame:pro 263 NINPHSPLGLGIT-DNSVSTLKKINDTYDQFWWEIK-MGQRTVFVSDVMLRTVPDESGMPPPQVFDPDVNVYKSIRMGTD 340 (517) Q Consensus 263 ~~~~~splG~S~~-~~~~~lid~lD~~~s~~~~e~~-~~~~~i~v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~ 340 (517) +.+...|+|+|.+ ..+++++|++|++.++.....+ .+-+..++ +.-+.++.+. ..|+........+..+++ T Consensus 178 ~~~l~~~~G~s~I~~~v~~l~da~~r~~~~~~~~~e~~a~pqr~i----~G~d~d~~~~---~~~~~~~~~i~~~~~~~~ 250 (410) T protein:vir:95 178 RPDAVRPFGRSRITRAGMYYQKYAKRTLERADITAEFYSWPQKYI----LGLDPDAEPM---EKWKATVSSLLTISSSDK 250 (410) T ss_pred cccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhee----eccCCCCCcC---chhhhhhhhheeccCCCC Confidence 7778899999988 5799999999999999988775 44444444 2223333222 123332222223333444 Q ss_pred CCcceEEec-ccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 341 EEFVKDVTH-DIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVIS 419 (517) Q Consensus 341 ~~~v~~~~~-dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~ 419 (517) +.++++.|+ .-..+.|.+.+..++++|+..+++++..||.......+|.++.+.++.+..++.++++.|..+|+++++. T Consensus 251 ~~~~~v~q~~~~~l~~~~~~l~~l~~~~a~~s~lP~~~lg~~~~NpsSa~Al~a~~~~L~~ka~~k~~~fg~~l~~~~rl 330 (410) T protein:vir:95 251 GVKPSVGQFTTASMSPFTEQLRTAAAGFAGEMGLTLDDLGFVSDNPSSVEAIKASHENLRLAGRKAQRSLGAGLLNVAYV 330 (410) T ss_pred CCcceEEecCCCChHHHHHHHHHHHHHHhhhcCCCHHHhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 556666553 3356789999999999999999999999998776667899999999999999999999999999999999 Q ss_pred HHHHHhhhhccCCCCCCccceEEEeC---CCccCCHHHHHHHHHHHHhc--CCCCHHHHHHhhCCCCHHHHHHHHHHHHH Q lcl|Aclame:pro 420 VLELAKTYKLFGGEIPSAEHIGVDFD---DGVFQDRSALLRFYGQAKTF--GFIPTVEAIQRIFKVPKKTAEQWLEEIRK 494 (517) Q Consensus 420 il~~~~~~~~~~~~~~~~~~v~i~f~---d~i~~d~~~~~~~~~~~~~~--G~~S~~~~l~~~~~~~eeea~~el~~i~~ 494 (517) ++.+... .........++.|.|. |.-..+..+.++.+.+++++ |+++.++.+..+ |+++++. .|++. T Consensus 331 a~~i~~~---~~~~~~~~~~~~v~W~p~~d~~~~s~a~~aDa~~Kl~~a~~g~~~~~~~~~~l-g~~~~~~----~~~~~ 402 (410) T protein:vir:95 331 AACLRDE---FRYTRSQFVRTAVKWEPLFEADANTMTMIGDGVVKLNQALPGYINAETIRDLT-GIAGDMS----AKPVV 402 (410) T ss_pred HHHHhcC---CCCcccccceeeEEeeecCCcchhhHHHHHHHHHHHHHhccCCccHHHHHHhc-CCChHHH----HHHHH Confidence 8876532 2223345567899998 76677788889999999988 788998866544 9987642 22222 Q ss_pred hccccCCC Q lcl|Aclame:pro 495 DQIELDPV 502 (517) Q Consensus 495 E~~~~~~~ 502 (517) |...+... T Consensus 403 ~e~~~~g~ 410 (410) T protein:vir:95 403 SEGGSNGE 410 (410) T ss_pred HHHHhCCC Confidence 22122211 No 67 >protein:vir:8184 Length: 474 # NCBI annotation: gp4 # Family: family:all:524 # MgeID: mge:153 # MgeName: Che9d # Cross-refs: genbank:acc:NP_817977;genbank:gi:29566411;genbank:GeneID:2700965 Probab=100.00 E-value=5.6e-34 Score=202.90 Aligned_cols=450 Identities=10% Similarity=0.005 Sum_probs=271.6 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccc--cCccccccccccChHHH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINS--QGKIQERDYMTLNLRKL 78 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~--~~~~~~~~~~~ln~~~~ 78 (517) =||=+--+.++.++... + .....++.+..+||.|+++. .+... ....+ .-+..+|+|++ T Consensus 10 ~gl~~~~~~~~~~L~~~--------~---------~~~~~~~~~~~~Yy~G~~~~-~~~~~~~p~~~r-~~~~v~nw~~~ 70 (474) T protein:vir:81 10 PSLSNDENALINGLLAQ--------I---------ENLRWKNLLRTSYYENKRTI-QYVGTLIPPQYF-NLGLVLGWTGK 70 (474) T ss_pred CCCChhHHHHHHHHHHH--------H---------HHHhhHHHHHHHHhccCCCh-hhccccccHHHH-HHHhhcChHHH Confidence 00000111111111000 0 01233566677899999753 22211 11111 12356899999 Q ss_pred HHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe-C--CeeEE Q lcl|Aclame:pro 79 SADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD-N--GEIEF 155 (517) Q Consensus 79 i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d-~--g~~~i 155 (517) |+..+|+.+.-+ .+.+++... ....++++.+.|+|......++..|+.+|.+++.++.+ + +.+.| T Consensus 71 ~Vd~~a~rl~~~--Gf~~~d~~~----------~~~~l~~iw~~N~ld~~~~~~~~~al~~G~sf~~V~~~~d~~~~~~i 138 (474) T protein:vir:81 71 AVDALARRCNLE--GFVWPDGDL----------DSLGGTEVVDDNHLLSEIDSAIVAAMQHGPAFLINTVGEDDEPEALI 138 (474) T ss_pred HHHHHHhhhccc--ceECCCCCc----------cchHHHHHHHhcChhHHHHHHHHHHHhhCceeEEEecCCCCCceeEE Confidence 999999987644 465554321 12347788889999999999999999999999998874 2 35889 Q ss_pred EEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccc Q lcl|Aclame:pro 156 SWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEEL 235 (517) Q Consensus 156 ~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~ 235 (517) .+++|.+++.++.+..+...+++..... ..++. .+..-.|.++. .++ +++.+.. . . T Consensus 139 ~~~sp~~~~~~~D~~~~~~~~al~~~~~--~~~g~--~~~~~ly~~~~------~~~----~~~~~~~----~------~ 194 (474) T protein:vir:81 139 HVKDASEATGEWNRRRRGLNNLLSIIDK--DKEGK--VLSLALYLDNE------TVT----AQRDKAT----L------K 194 (474) T ss_pred EEeccceEEEEEeCCCCcceeeeEEEEE--cCCCc--EEEEEEEeCCc------EEE----EEEcCcc----c------e Confidence 9999999998875555555555543322 22222 23333343332 111 2222111 0 0 Q ss_pred cCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchh-hhhHHHHHHHHHHHHHHHHHHH-hccceeecchHHhccC Q lcl|Aclame:pro 236 YEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGIT-DNSVSTLKKINDTYDQFWWEIK-MGQRTVFVSDVMLRTV 313 (517) Q Consensus 236 ~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~-~~~~~lid~lD~~~s~~~~e~~-~~~~~i~v~~~~l~~~ 313 (517) |. .+...++++.| ++. .+|+.+...|+|+|.+ ..+++++|++|++.++.....+ .+-+..+|..--.... T Consensus 195 w~---~~~~~~~~gvP-vV~----~~n~~~~~~~~G~s~i~e~v~~l~da~~r~~~~~~~~~e~~a~pqr~i~G~~~~~~ 266 (474) T protein:vir:81 195 WQ---VDRDEHVYGVP-AQV----LPYKPAPKRPFGQSRITKPMMGLQDAGVRELARREGHMDVFSYPEFWLLGADESAL 266 (474) T ss_pred ee---eccCCCCCCcc-eEE----ecccccccCcCCccccchhHHHHHHHHHHHHHHHHHHHHHhcchhheeecCChhhc Confidence 10 01112344445 443 3577788899999998 4889999999999999988775 4444444411000000 Q ss_pred CCCcccccCccCCcccceeeeecCCCCC-----CcceEEec-ccChHHHHHHHHHHHHHHHHHhCCCccccccCC-Cccc Q lcl|Aclame:pro 314 PDESGMPPPQVFDPDVNVYKSIRMGTDE-----EFVKDVTH-DIRTEQYKEAINQALRTLEMELKLSVGTFSFDG-RSMK 386 (517) Q Consensus 314 ~~~~~~~~~~~fd~~~~~y~~~~~~~~~-----~~v~~~~~-dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~-~~~~ 386 (517) .+..+. +...|+.-......+..++++ +++++.|+ +-..+.|.+.+..++++|+..+++++..||+.+ .+.. T Consensus 267 ~d~d~~-~~~~~~~~~~~i~~~~~d~d~~~~~~~~~~~~q~~~a~l~~~~~~l~~~~~~~a~~t~iP~~~lG~~~~~np~ 345 (474) T protein:vir:81 267 KNADGT-IKSVWEARLGRIKGLPDDADADIPQLARADVKQFPAASPDAHWSDINGLAKLFAREASLPDTAVAISGLSNPT 345 (474) T ss_pred cccccc-ccchhhhhHHHHhcCCCcccccccccccccccccCCCChhHHHHHHHHHHHHHHhhhCCCHHHhccccccccc Confidence 111111 111222111111122222221 12344442 346688999999999999999999999999765 5668 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcC Q lcl|Aclame:pro 387 TATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFG 466 (517) Q Consensus 387 TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G 466 (517) ||.++.+.+..+..++.++++.|..+|.++++.++.+..... ..........+.+.|.|...++..+.++.+.+++++| T Consensus 346 SaeAi~a~~~~l~~kae~k~~~fg~~l~~~~rla~~i~~~~~-~~~~~~~~~~~~v~W~d~~~~s~a~~aDa~~Kl~~a~ 424 (474) T protein:vir:81 346 SAESYDASQYELIAEAEGAVDDFTPALRKAFIRALAMKNKVA-IDEIPDEWKSIDAKWRDPRYLSKSAQADAGMKQLAAV 424 (474) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-ccccchhhccceeEecCCCccCHHHHHHHHHHHHhcc Confidence 899999999999999999999999999999999887653211 1112233567899999999999999999999999988 Q ss_pred C-CCHHHHHHhhCCCCHHHHHHHHHHHHHhccccCCCCCccccCCCCCCC Q lcl|Aclame:pro 467 F-IPTVEAIQRIFKVPKKTAEQWLEEIRKDQIELDPVTISQRAQKRMFGD 515 (517) Q Consensus 467 ~-~S~~~~l~~~~~~~eeea~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ 515 (517) . +..+..+.+..|+|+++++++.++.+++++...-...-....++..+. T Consensus 425 ~~~~~~~~~~~~lg~t~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~aq 474 (474) T protein:vir:81 425 PWLAETEVGLELIGLTPQQARRAMADKRRVQGRGTLQALIDRSNNGATAQ 474 (474) T ss_pred cCCCcHHHHHhhcCCCHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCCCC Confidence 3 444444566789999988776655544443211110001111111111 No 68 >protein:vir:9751 Length: 422 # NCBI annotation: putative structural protein # Family: family:all:524 # MgeID: mge:175 # MgeName: 315.3 # Cross-refs: genbank:acc:NP_795513;genbank:gi:28876291;genbank:GeneID:1257832 Probab=100.00 E-value=4.1e-34 Score=203.62 Aligned_cols=410 Identities=11% Similarity=0.039 Sum_probs=270.4 Q ss_pred hhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccc--cCccccccccccChHHHHHHHHhhhhcCCcceeE Q lcl|Aclame:pro 18 LSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINS--QGKIQERDYMTLNLRKLSADVLSGLVFNEQCEVY 95 (517) Q Consensus 18 ~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~--~~~~~~~~~~~ln~~~~i~~~~A~ll~~e~~~i~ 95 (517) |..+.+..+.... .....+..+..+||.|+++. .+... ....+...+.-+|+|+.|+..+|+.++-+ .++ T Consensus 1 m~~~~i~~L~~~~-----~~~~~r~~~~~~yy~g~~~~-~~~~~~~p~~~~~~~~~v~nw~~~~Vd~~a~rl~~~--Gf~ 72 (422) T protein:vir:97 1 MNYMGMGYLRRKL-----ALFKTGVDKRYRYYAMDDRD-DTRSIVMPNNVREMYRSVLEWTAKGVDSLADRIIFR--EFT 72 (422) T ss_pred CChHHHHHHHHHH-----HHHHHHHHHHHHHHhcCCCh-hhcCccccHHHHHHHHhhcchhHHHHHHHHhccccc--eee Confidence 1112222222111 12345677788999999753 22211 11122222334599999999999866433 354 Q ss_pred ecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe--CCeeEEEEEcCCeEEEEEEcCCce Q lcl|Aclame:pro 96 VSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD--NGEIEFSWALANAFYPLRSNSNGI 173 (517) Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d--~g~~~i~~v~a~~~~P~~~~~~~~ 173 (517) +++. .++++++.|+|.....+++..|+.+|.+++.++.+ +|.+.|.+++|.+++.++.+..+. T Consensus 73 ~~d~---------------~l~~~w~~N~ld~~~~~~~~~al~~G~sf~~v~~~~~~~~p~i~~~sp~~~~~i~D~~~~~ 137 (422) T protein:vir:97 73 NDDF---------------NAWEIFKANNPDIFFDTAIQSALIASCCFVYIMPGAEDGLPKMQVIEASKATGILDPTTFL 137 (422) T ss_pred CCch---------------hHHHHHHhcChHHHHHHHHHHHHHhcceeEEEeeCCCCCeeEEEEechhhEEEEEeCCCCc Confidence 4331 25667778999999999999999999999999986 478899999999999987555566 Q ss_pred EEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccccCCCCcceEEcCCCcceE Q lcl|Aclame:pro 174 SEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLF 253 (517) Q Consensus 174 ~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f 253 (517) ..+++.++.. ..++....+ .++ .. .+ + ..|+.+ |. + ...-+++++||+ T Consensus 138 ~~~a~~~~~~--~~~~~~~~~--~~~-~~------~~--~--~~~~~~-----~~-------~-----~~~~~~~g~vPv 185 (422) T protein:vir:97 138 LTEGYAILES--DSNGNPTLE--AYF-TD------KD--I--WYYPKK-----GK-------P-----YNIKNPTGHPLL 185 (422) T ss_pred ceeeEEEEEe--cCCCcEEEE--EEE-cC------ce--E--EEEcCC-----Cc-------c-----ccccCCCCCcce Confidence 6666554332 222222211 111 11 11 1 122221 11 0 112356778888 Q ss_pred EEecCCccccccCCCCCCcchh-hhhHHHHHHHHHHHHHHHHHHH-hccceeecchHHhccCCCCcccccCccCCcccce Q lcl|Aclame:pro 254 NYLKPSGFNNINPHSPLGLGIT-DNSVSTLKKINDTYDQFWWEIK-MGQRTVFVSDVMLRTVPDESGMPPPQVFDPDVNV 331 (517) Q Consensus 254 ~~~~~~~~N~~~~~splG~S~~-~~~~~lid~lD~~~s~~~~e~~-~~~~~i~v~~~~l~~~~~~~~~~~~~~fd~~~~~ 331 (517) +.| +|+....+|+|+|++ ..+++++|++|++.++.....+ .+-+..++ +..+.++.+. ..|+..... T Consensus 186 v~~----~n~~~~~~~~G~s~I~e~v~~l~da~~r~~~~~~~~~e~~a~pqr~i----~G~d~d~~~~---~~~~~~~~~ 254 (422) T protein:vir:97 186 VPI----IHRPDAVRPFGRSRITKAGMYHQKAAKRTLERAEVTAEFYSFPQKYV----LGMDPDAKPM---EKWRATVST 254 (422) T ss_pred EEe----cccCCCccccCccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhh----cccCcccccC---chhhhhhhh Confidence 876 466677899999998 5799999999999999988876 44455454 2223333222 123322212 Q ss_pred eeeecCCCCCCcceEEecc-cChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 332 YKSIRMGTDEEFVKDVTHD-IRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVSENDLTYRTRNDHVYEVE 410 (517) Q Consensus 332 y~~~~~~~~~~~v~~~~~d-ir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a~~~~~~~t~~~~~~~~~ 410 (517) ...+..++++.++++-|++ -..+.|.+.++.++++++..+++++..||.......+|.++++....|..++..+++.|. T Consensus 255 i~~~~~de~~~~~~v~q~~~~~l~~~~~~l~~~~~~~a~~s~lP~~~lg~~~~NpsSa~Ai~a~~~~L~~ka~~k~~~fg 334 (422) T protein:vir:97 255 LLEISKDEDGDKPTVGQFTTASMAPFMEHLKMYASLFAGGSGLTLDDLGFPSDNPSSVESIKAAHENLRAAGRKAQRSFS 334 (422) T ss_pred hhccCCCCCCCcceeeecCCCChhHHHHHHHHHHHHHhcccCCCHHHhccccCchhHHHHHHHHHHHHHHHHHHHHHHHH Confidence 2233334455566665533 345789999999999999999999999998777667899999999999999999999999 Q ss_pred HHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCC---HHHHHHHHHHHHhc--CCCCHHHHHHhhCCCCHHHH Q lcl|Aclame:pro 411 QFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQD---RSALLRFYGQAKTF--GFIPTVEAIQRIFKVPKKTA 485 (517) Q Consensus 411 ~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d---~~~~~~~~~~~~~~--G~~S~~~~l~~~~~~~eeea 485 (517) .+|.++++.++.+... .........++.+.|....+.| ..+.++.+.+++++ |+++.++.+..+ |+++ + T Consensus 335 ~~l~~~~rla~~~~~~---~~~~~~~~~~~~~~w~p~~~~~~~s~a~~aDa~~Kl~~a~~~~~~~~~~~~~l-g~~~--~ 408 (422) T protein:vir:97 335 SGFLNVAYIAVCLRDE---FPYLRNQFMDTVIKWEPLFEADANMLTLVGDGAIKLNQAIPGFMDADVIRDLT-GVKG--A 408 (422) T ss_pred HHHHHHHHHHHHHhcC---CcccchhhccceEEEccCCCCChHHHHHHHHHHHHHHhhccccccHHHHHHHc-CCCc--h Confidence 9999999998876532 1222334457899999655666 45556677888888 689999876554 8866 4 Q ss_pred HHHHHHHHHhcccc Q lcl|Aclame:pro 486 EQWLEEIRKDQIEL 499 (517) Q Consensus 486 ~~el~~i~~E~~~~ 499 (517) +.+.+++.++++.. T Consensus 409 ~~~~~~~~~~~~d~ 422 (422) T protein:vir:97 409 DKPIPAITEVTTDG 422 (422) T ss_pred hHHHHHHHhhhccC Confidence 56777776665433 No 69 >protein:vir:94742 Length: 409 # NCBI annotation: putative portal protein # Family: family:all:524 # MgeID: mge:1529 # MgeName: phi LC3 # Cross-refs: genbank:acc:NP_996701;genbank:gi:45597416;genbank:GeneID:2767966 Probab=100.00 E-value=6.6e-33 Score=197.00 Aligned_cols=396 Identities=10% Similarity=0.008 Sum_probs=261.3 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCccccccccc--CccccccccccChHHH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQ--GKIQERDYMTLNLRKL 78 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~--~~~~~~~~~~ln~~~~ 78 (517) ..++.++.+.+ . ....+..+..+||.|+++ +.+.... ...+.+.+..+|+|+. T Consensus 3 ~~~i~~L~~~~---------------~---------~~~~r~~~~~~yY~g~~~-~~~~~~~~p~~~~~~~~~v~nw~~~ 57 (409) T protein:vir:94 3 EKGIGYLRFKL---------------S---------VHKRRAEMRYDQYAMKYV-DRFKGITIPQALSQQYRSILGWCAK 57 (409) T ss_pred HHHHHHHHHHH---------------H---------HHhHHHHHHHHHhcccCc-hhhcChhhhHHHHHHHhhhcchhHH Confidence 12222221111 1 133466777889999974 3332211 1112223456799999 Q ss_pred HHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe-CCeeEEEE Q lcl|Aclame:pro 79 SADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD-NGEIEFSW 157 (517) Q Consensus 79 i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d-~g~~~i~~ 157 (517) |+..+|+.+.-+ .++.++ +.++++++.|+|.....+++..|+.+|.+++.+|-+ +|+++|.+ T Consensus 58 iVds~a~rl~~~--Gf~~~d---------------~~l~~i~~~N~ld~~~~~~~~~aliyG~sf~~v~~~~dg~~~i~~ 120 (409) T protein:vir:94 58 GVDSLADRLVFR--EFENDD---------------FTVNEIFEENNPDIFFDSAVLSSLIASCSFTYISKGENDAVRLQV 120 (409) T ss_pred HHHHhHhhcccC--cccCCc---------------hHHHHHHHhcChhHHHHHHHHHHHHhcceeEEEecCCCCceEEEE Confidence 999999866432 343322 236677888999999999999999999999998876 68899999 Q ss_pred EcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccccC Q lcl|Aclame:pro 158 ALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYE 237 (517) Q Consensus 158 v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~ 237 (517) ++|.+++-++.+..+...+++.... .. ...+.+...++.++. ++ .+++.... |. T Consensus 121 ~sp~~~~~i~D~~~~~~~~a~~~~~--~d--~~~~~~~~~~~~~~~------~~----~~~~~~~~------------~~ 174 (409) T protein:vir:94 121 IEAVNATGIIDPITGLLTEGYAVLE--RD--ENNNVVLEAHFLPDR------TD----YYYRDSRN------------NI 174 (409) T ss_pred eccceEEEEEecCCCceeeeEEEEE--ec--CCCceEEEEEEecCc------EE----EEEecCce------------eE Confidence 9999999876554455555443221 11 112233444444332 11 12221110 11 Q ss_pred CCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhh-hhHHHHHHHHHHHHHHHHHHH-hccceeecchHHhccCCC Q lcl|Aclame:pro 238 GMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITD-NSVSTLKKINDTYDQFWWEIK-MGQRTVFVSDVMLRTVPD 315 (517) Q Consensus 238 ~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~-~~~~lid~lD~~~s~~~~e~~-~~~~~i~v~~~~l~~~~~ 315 (517) ..-+++++||++.| +|+.+..+|+|+|++. .+++++|++|++.++.....+ .+-+..++ +.-+.+ T Consensus 175 -----~~~n~~g~vPvV~f----~n~~~~~~~~G~s~I~e~v~~l~da~~r~~~~~~~~~e~~a~pqr~i----~G~d~d 241 (409) T protein:vir:94 175 -----SIANPTGHPLLVPI----IHRPDAVRPFGRSRITRSGMYWQSNAKRTLERADVTAEFYSFPQKYV----TGLSDD 241 (409) T ss_pred -----eeeCCCCCcceEEe----ccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHhcChhhee----EecCCC Confidence 12256778888877 4667788999999994 799999999999999988875 44444444 222233 Q ss_pred CcccccCccCCcccceeeeecCCCCCCcceEEecc-cChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHHHHH Q lcl|Aclame:pro 316 ESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHD-IRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVSE 394 (517) Q Consensus 316 ~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~d-ir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a~ 394 (517) +.+. ..|+........+..++++.++++.|++ -..+.|.+.++.++++++..+++++..||.......+|.++.+. T Consensus 242 ~~~~---~~~~~~~~~i~~~~~d~dg~~~~v~q~~~~~l~~~~~~l~~~~~~~a~~t~lP~~~lg~~~~NpsSa~Al~a~ 318 (409) T protein:vir:94 242 AEPM---ETWKATVSSMLQFTKDEDGDKPTLGQFTQPSMSPFTEQLRTAAAGFAGETGLTLDDLGFVSDNPSSVEAIKAS 318 (409) T ss_pred Cccc---chhhhhHHHhhcCCCCCCCCCceEEecCCCChhHHHHHHHHHHHHHhhhcCCCHHHhccccCchhHHHHHHHH Confidence 3222 1233221112223334455556665533 35578999999999999999999999999877666789999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCH---HHHHHHHHHHHhcC--CCC Q lcl|Aclame:pro 395 NDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDR---SALLRFYGQAKTFG--FIP 469 (517) Q Consensus 395 ~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~---~~~~~~~~~~~~~G--~~S 469 (517) .+.+..++.++++.|..+|+++++.++.+... ..........+.+.|.+..+.+. .+.++.+.+++++| +++ T Consensus 319 ~~~L~~~a~~k~~~fg~~~~~~~rla~~i~~~---~~~~~~~~~~~~v~W~p~~~~~~~~~a~~aDa~~Kl~~ag~~~~~ 395 (409) T protein:vir:94 319 HENLRLAGRKAQRSLGAGLLNVAYLAACLRDD---APYLREQFRKTKPKWEPLFEADASMLSLIGDGAIKLNQAIPEFIN 395 (409) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CCccccccccceEEeccCCCcchHHHHHHHHHHHHHHHhcccccc Confidence 99999999999999999999999988876542 12223344679999996555553 45667789999999 566 Q ss_pred HHHHHHhhCCCCHHH Q lcl|Aclame:pro 470 TVEAIQRIFKVPKKT 484 (517) Q Consensus 470 ~~~~l~~~~~~~eee 484 (517) .+..+ +..|+++.+ T Consensus 396 ~~~~~-~~lG~~~~d 409 (409) T protein:vir:94 396 KDTIR-DLTGIEGGE 409 (409) T ss_pred hhHHH-HHcCCCCCC Confidence 67654 566998876 No 70 >protein:vir:1634 Length: 409 # NCBI annotation: Structural protein # Family: family:all:524 # MgeID: mge:33 # MgeName: r1t # Cross-refs: genbank:acc:NP_695055;genbank:gi:23455746;genbank:GeneID:955506 Probab=100.00 E-value=1.4e-32 Score=195.16 Aligned_cols=398 Identities=10% Similarity=0.008 Sum_probs=259.9 Q ss_pred hhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccc--cCccccccccccChHHHHHHHHhhhhcCCcceeE Q lcl|Aclame:pro 18 LSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINS--QGKIQERDYMTLNLRKLSADVLSGLVFNEQCEVY 95 (517) Q Consensus 18 ~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~--~~~~~~~~~~~ln~~~~i~~~~A~ll~~e~~~i~ 95 (517) |....|..+.... .....+..+..+||.|+++ +.+... ....+.+.+..+|+|+.|+..+|+.+.-+ .++ T Consensus 1 ~~~~~i~~L~~~~-----~~~~~r~~~~~~yY~g~~~-~~~~~~~~p~~~~~~~~~v~nw~~~iVds~a~rl~~~--Gf~ 72 (409) T protein:vir:16 1 MTEKGIGYLRFKL-----SVHKRRAEMRYEQYAMKHV-DRFKGITIPQALSQQYRSILGWCAKGVDSLADRLVFR--EFE 72 (409) T ss_pred CCHHHHHHHHHHH-----HHHhHHHHHHHHHHhccCc-hhhcchhhhHHHHHHHhhhcChhHHHHHHhHhhcccc--ccc Confidence 1111122111100 1233567778889999964 322211 11122223456799999999999866433 343 Q ss_pred ecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe-CCeeEEEEEcCCeEEEEEEcCCceE Q lcl|Aclame:pro 96 VSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD-NGEIEFSWALANAFYPLRSNSNGIS 174 (517) Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d-~g~~~i~~v~a~~~~P~~~~~~~~~ 174 (517) .++ +.++++++.|+|.....+++..|+.+|.+++.++-+ +|+++|.+++|.+++.++.+..+.. T Consensus 73 ~~d---------------~~l~~i~~~N~ld~~~~~~~~~al~yG~sf~~v~~~~dg~~~i~~~sP~~~~~i~D~~~~~~ 137 (409) T protein:vir:16 73 NDD---------------FTVNEIFEENNPDIFFDSTVLSALIASCSFTYISKGENDAVRLQVIEATNATGIIDPITGLL 137 (409) T ss_pred Ccc---------------hHHHHHHHhcChhHHHHHHHHHHHHhCceeEEEecCCCCceEEEEEcccceEEEeecccccc Confidence 322 236677888999999999999999999999998875 5789999999999998865555555 Q ss_pred EEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccccCCCCcceEEcCCCcceEE Q lcl|Aclame:pro 175 EGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFN 254 (517) Q Consensus 175 ~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~ 254 (517) .+++..... ..++. -+...++..+. + ...++.. . .|. ..-++++++|++ T Consensus 138 ~~a~~~~~~--d~~~~--~~~~~~~~~~~------~----~~~~~~~-~-----------~~~-----~~~~~~g~vPvV 186 (409) T protein:vir:16 138 TEGYAVLER--DENNN--VVLEAHFLPDR------T----DYYYRDS-R-----------NNI-----SIANPTGNPLLV 186 (409) T ss_pred eeeeEEEEe--cCCCc--eEEEEEEecCc------E----EEEEecC-c-----------ccc-----ceecCCCCcceE Confidence 555543221 11111 12222232221 0 1122211 1 011 123667888888 Q ss_pred EecCCccccccCCCCCCcchhh-hhHHHHHHHHHHHHHHHHHHH-hccceeecchHHhccCCCCcccccCccCCccccee Q lcl|Aclame:pro 255 YLKPSGFNNINPHSPLGLGITD-NSVSTLKKINDTYDQFWWEIK-MGQRTVFVSDVMLRTVPDESGMPPPQVFDPDVNVY 332 (517) Q Consensus 255 ~~~~~~~N~~~~~splG~S~~~-~~~~lid~lD~~~s~~~~e~~-~~~~~i~v~~~~l~~~~~~~~~~~~~~fd~~~~~y 332 (517) .| +|+.+...|+|+|.+. .+++++|++|++.++.....+ .+-+..++ +.-+.++... ..|+...... T Consensus 187 ~f----~n~~~~~~~~G~seI~~~v~~l~da~~r~~~~~~~~~e~~a~pqr~i----~G~d~d~~~~---~~~~~~~~~i 255 (409) T protein:vir:16 187 PI----IHRPDAVRPFGRSRITRSGMYWQSNAKRTLERADVTAEFYSFPQKYV----TGLSDDAEPM---ETWKATVSSM 255 (409) T ss_pred Ee----cccccccccCCccccchhHHHHHHHHHHHHHHHHHHHHHhcChhhee----EecCCCCCcc---chhhhhhhHh Confidence 77 4777888999999985 699999999999999988775 44444444 2222322221 1233221112 Q ss_pred eeecCCCCCCcceEEecc-cChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 333 KSIRMGTDEEFVKDVTHD-IRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVSENDLTYRTRNDHVYEVEQ 411 (517) Q Consensus 333 ~~~~~~~~~~~v~~~~~d-ir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a~~~~~~~t~~~~~~~~~~ 411 (517) ..+..++++.++++-|++ -..+.|.+.++.+.++++..+++++..||.......+|.++.+....+..++.++++.|.. T Consensus 256 ~~~~~d~~g~~~~v~q~~~~~l~~~~~~l~~~~~~~a~~s~lP~~~lg~~~~NpsSa~Ai~a~~~~L~~ka~~k~~~fg~ 335 (409) T protein:vir:16 256 LQFTKDEDGDKPTLGQFTQPSMSPFTEQLRTAAAGFAGETGLTLDDLGFVSDNPSSVEAIKASHENLRLAGRKAQRSLGA 335 (409) T ss_pred hccCCCCCCCCceEEecCCCChhHHHHHHHHHHHHHhhhcCCCHHHcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 223333445555554433 3457899999999999999999999999987766678999999999999999999999999 Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCC---HHHHHHHHHHHHhcCC--CCHHHHHHhhCCCCHHH Q lcl|Aclame:pro 412 FIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQD---RSALLRFYGQAKTFGF--IPTVEAIQRIFKVPKKT 484 (517) Q Consensus 412 al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d---~~~~~~~~~~~~~~G~--~S~~~~l~~~~~~~eee 484 (517) +|+++++.++.+... .+........+.+.|.+...++ ..+.++.+.+++++|. +..+. +.++.|+++.+ T Consensus 336 ~l~~~~rla~~~~~~---~~~~~~~~~~~~v~W~~~~~~~~~s~a~~aDa~~Kl~~a~~~~~~~~v-~~~~~g~~~~d 409 (409) T protein:vir:16 336 GLLNVAYLAACLRDD---VPYLREQFSKTKPKWEPLFEADASMLSLIGDGAIKLNQAIPEFINKDT-IRDLTGIKGAE 409 (409) T ss_pred HHHHHHHHHHHHhcC---CCccchhhccceEEecCCCCcchhhHHHHHHHHHHHHhhcccccchhH-HHHhccCCCCC Confidence 999999998876532 1222333467899999765444 5677888999999973 33455 45566998876 No 71 >protein:vir:101494 Length: 527 # NCBI annotation: gp9 # Family: family:all:6920 # MgeID: mge:1627 # MgeName: PLot # Cross-refs: genbank:acc:YP_655388;genbank:gi:109522576;genbank:GeneID:4157566 Probab=100.00 E-value=1.1e-31 Score=190.37 Aligned_cols=480 Identities=12% Similarity=0.066 Sum_probs=280.4 Q ss_pred HHH-Hhhc---ccchhhhcc-ccCcCCHHHHHHHHHHH---HHhcCCCcccccccccCccccccccccChHHHHHHHHhh Q lcl|Aclame:pro 14 GGY-ALSG---QTLKSINDH-EKINIDPNELARIERNL---RQYEGDYPQVEYINSQGKIQERDYMTLNLRKLSADVLSG 85 (517) Q Consensus 14 ~~~-~~~~---~~~~~~~~~-~~i~~~~~~~~~i~~~~---~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~~~i~~~~A~ 85 (517) |++ .-.. |+|..-.+. +. .||+.-..|+..|+ .||.|+...+.-.-..++ .+....+- ...+. T Consensus 1 ~~~~~~~~~~~~~~~~g~~~~p~-~v~~~d~~Rl~aY~l~~~~y~n~~~~~~~~lrg~~--~~~~r~~~------~ps~~ 71 (527) T protein:vir:10 1 MGQDKRQYGSTQQLRAGEANFPN-AVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGD--EGDQRPIY------VPNGE 71 (527) T ss_pred CCccccccCCCcCcCCccccCcc-cCCHHHHHHHHHHHHHHHHhcCchhheeeecCCcc--ccccceee------ehhhH Confidence 221 1111 223211111 11 26777777777666 579998766542211111 11122222 22447 Q ss_pred hhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeC-----CeeEEEEEcC Q lcl|Aclame:pro 86 LVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDN-----GEIEFSWALA 160 (517) Q Consensus 86 ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~-----g~~~i~~v~a 160 (517) .+++..-.|++.+.... .+......++.|...++.+.+..++.++-.+|..+|+++|++-||. +++++..++| T Consensus 72 ~~~~~~~~~~~~g~~~~--~~~~~e~v~~~lr~~~~~e~l~~~~~~~~r~~~vlGDg~f~l~wD~~k~~~~R~~v~~~DP 149 (527) T protein:vir:10 72 KLIEAKMRFLGQGLKWE--FSKKDAKVDDAIKVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDP 149 (527) T ss_pred HhhCCcceeeccCcccc--ccchhHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhcceeEEEeeccCCCcCCCceEeecCc Confidence 78888888888776532 2334455678888899999999999999999999999999999995 3689999999 Q ss_pred CeEEEEEEcCC-ceEEEEE-EEEEEEEecCCcEEE-EEEEEEeecceeec--cceEEEEEEE--eecCCccccCcccccc Q lcl|Aclame:pro 161 NAFYPLRSNSN-GISEGVM-KSVTTKVIGNKTVYY-TLLEFHEWEKTEEG--ESLYVITNEL--YKSDNEGEIGKRIPLE 233 (517) Q Consensus 161 ~~~~P~~~~~~-~~~~~a~-~~~~~~~~~~~~~~y-t~lE~h~~~~~~~~--~~~y~I~n~l--y~~~~~~~lG~~v~l~ 233 (517) .++||++...+ +....+. +..+....+.+..++ .++-+.+++-...+ ...++|.+.. |..++-... .+.|+. T Consensus 150 ~~~f~~ed~d~~~~v~~v~~~~~~~~P~d~~~~~~~ar~~~~~~~l~~~g~~~~~G~~~yt~~~w~lg~w~d~-~e~p~~ 228 (527) T protein:vir:10 150 STYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDR-PESPLE 228 (527) T ss_pred ceeeeeecCCCCCceeeEEEeeeccCCccccccceehhhhhhhhhcCcccccccCcceeeeeceeeccccccc-cccccc Confidence 99999865433 3444443 211122222222222 22222111111111 1223333211 111110000 111211 Q ss_pred -cccCCCCcceEE----cCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeecchH Q lcl|Aclame:pro 234 -ELYEGMQEKTYI----QGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRTVFVSDV 308 (517) Q Consensus 234 -~~~~~l~~~~~~----~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~ 308 (517) +-++.....++. ..++.+|+++|+ |.....+.+|.|++++.++++++||.+.|+..+.++.+..-|++-.. T Consensus 229 ~~~~~~~~~~~~l~~lp~pi~fiPvV~~~----t~p~~~~~WG~S~La~ll~l~deLn~~~Td~s~is~~sG~Pi~~~tg 304 (527) T protein:vir:10 229 PDDIKKLSTLTEEEPLPEQITTLPVFHFR----GHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDS 304 (527) T ss_pred hhhhhhhcCceeeecccCCCCccceEeec----CCCccccccChhhHhHHHHHHHHHhhhhhHHHHHHHHhCCceeeecc Confidence 001111111222 234566777773 34455678899999999999999999999999999987777776444 Q ss_pred HhccCCCCcccccCccCCcccceeeeecCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCcccccc-CCCccch Q lcl|Aclame:pro 309 MLRTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSF-DGRSMKT 387 (517) Q Consensus 309 ~l~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~-~~~~~~T 387 (517) +-..+..|.. .+. .-.. -..+..+++ ..+..++---.++.+...++.+.+.|...++++...||. +.++.-| T Consensus 305 ~~~vd~~G~~-~~~--~VgP---G~iweL~e~-ak~~~v~~~~~la~~~~h~~~L~~~l~~vA~~PavA~G~vD~s~~~S 377 (527) T protein:vir:10 305 APPRDSRGNM-VPW--TISP---LGMVEHGQN-NKIYRVNGVASLEPSQTHMTKAEEAMQQTKGIPDIAVGVVDAAVAES 377 (527) T ss_pred cccccccCCc-Ccc--ccCC---ceeEecCCC-cceeeccchhhhHHHHHHHHHHHHHHHHhhcCCeeeeccccCCcCcH Confidence 4222211111 100 0000 011222222 233333332255778888999999999999999999993 4456778 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhccCCCC-CCccceEEEeCCCccCCHHHHHHHHHHHHhc Q lcl|Aclame:pro 388 ATEIVSENDLTYRTRNDHVYEVEQFIKGLVI-SVLELAKTYKLFGGEI-PSAEHIGVDFDDGVFQDRSALLRFYGQAKTF 465 (517) Q Consensus 388 Atei~a~~~~~~~t~~~~~~~~~~al~~li~-~il~~~~~~~~~~~~~-~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~ 465 (517) +.++.-+.+.+++++.+++..|+...+++.+ -+..+..+|...+... .....++|.|.+.+|.|.++.++++.+++++ T Consensus 378 G~ALeL~L~PLlar~~rk~L~~~~vqrq~~~~~~~~~L~aye~v~~~d~~~~~~v~ivf~p~lP~D~~avie~v~tL~~a 457 (527) T protein:vir:10 378 GIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNSEKRFNQLLQLWEA 457 (527) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcccCCCccccceEEEecccCCCCHHHHHHHHHHHHHc Confidence 8888888899999999998888888877554 1222223333333322 2345789999999999999999999999999 Q ss_pred CCCCHHHHHHhhC--CCCHHHHHHHHHHHHHhccc------cCCCCCcc-ccCCCCCCCCC Q lcl|Aclame:pro 466 GFIPTVEAIQRIF--KVPKKTAEQWLEEIRKDQIE------LDPVTISQ-RAQKRMFGDEE 517 (517) Q Consensus 466 G~~S~~~~l~~~~--~~~eeea~~el~~i~~E~~~------~~~~~~~~-~~~~~~~G~ee 517 (517) |++|.++|+.++- |+ .+.+++|++||.+|.+. ....+.+. -.+.+..+++| T Consensus 458 Gi~S~~tAv~~L~~~~g-~eD~E~E~~~I~~era~~a~a~a~A~~~~~a~~~~~~g~~~~~ 517 (527) T protein:vir:10 458 GLIPAKKLTEELSKIMG-FELTEEDFKQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEE 517 (527) T ss_pred CchhHHHHHHHHHhccC-CCChHHHHHHHHHHHHHHhHHhhhhcCchhhhhccccCCCCCC Confidence 9999999988762 22 22255666777655432 11122222 23444556666 No 72 >protein:vir:102239 Length: 527 # NCBI annotation: gp9 # Family: family:all:6920 # MgeID: mge:1648 # MgeName: PBI1 # Cross-refs: genbank:acc:YP_655205;genbank:gi:109522785;genbank:GeneID:4157478 Probab=100.00 E-value=1.2e-31 Score=190.05 Aligned_cols=480 Identities=12% Similarity=0.067 Sum_probs=280.6 Q ss_pred HHH-Hhhc---ccchhhhcc-ccCcCCHHHHHHHHHHH---HHhcCCCcccccccccCccccccccccChHHHHHHHHhh Q lcl|Aclame:pro 14 GGY-ALSG---QTLKSINDH-EKINIDPNELARIERNL---RQYEGDYPQVEYINSQGKIQERDYMTLNLRKLSADVLSG 85 (517) Q Consensus 14 ~~~-~~~~---~~~~~~~~~-~~i~~~~~~~~~i~~~~---~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~~~i~~~~A~ 85 (517) |++ .-.. |+|..-.+. +. .||+.-..|+..|+ .||.|+...+.-.-..++ .+....+- ...+. T Consensus 1 ~~~~~~~~~~~~~~~~g~~~~p~-~v~~~d~~Rl~aY~l~~~~y~n~~~~~~~~lrg~~--~~~~r~~~------~ps~~ 71 (527) T protein:vir:10 1 MGQDKRQYGSTQQLRAGEANFPN-AVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGD--EGDQRPIY------VPNGE 71 (527) T ss_pred CCccccccCCCcCcCCccccCcc-cCCHHHHHHHHHHHHHHHHhcCchhheeeecCCcc--ccccceee------ehhhH Confidence 221 1111 223211111 11 26777777777666 579998766542211111 11122222 22447 Q ss_pred hhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeC-----CeeEEEEEcC Q lcl|Aclame:pro 86 LVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDN-----GEIEFSWALA 160 (517) Q Consensus 86 ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~-----g~~~i~~v~a 160 (517) .+++..-.|++.+.... .+......++.|...++.+.+..++.++-.+|..+|+++|++-||. +++++..++| T Consensus 72 ~~~~~~~~~~~~g~~~~--~~~~~e~v~~~lr~~~~~e~l~~~~~~~~r~~~vlGDg~f~l~wD~~k~~~~R~~v~~~DP 149 (527) T protein:vir:10 72 KLIEAKMRFLGQGLKWE--FSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDP 149 (527) T ss_pred HhhCCcceeeccCcccc--ccchhHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhcceeEEEeeccCCCcCCCceEeecCc Confidence 78888888888776532 2334455678888899999999999999999999999999999995 3689999999 Q ss_pred CeEEEEEEcCC-ceEEEEE-EEEEEEEecCCcEEE-EEEEEEeecceeec--cceEEEEEEE--eecCCccccCcccccc Q lcl|Aclame:pro 161 NAFYPLRSNSN-GISEGVM-KSVTTKVIGNKTVYY-TLLEFHEWEKTEEG--ESLYVITNEL--YKSDNEGEIGKRIPLE 233 (517) Q Consensus 161 ~~~~P~~~~~~-~~~~~a~-~~~~~~~~~~~~~~y-t~lE~h~~~~~~~~--~~~y~I~n~l--y~~~~~~~lG~~v~l~ 233 (517) .++||++...+ +....+. +..+....+.+..++ .++-+.+++-...+ ...++|.+.. |..++-... .+.|+. T Consensus 150 ~~~f~~ed~d~~~~v~~v~~~~~~~~P~d~~~~~~~ar~~~~~~~l~~~g~~~~~G~~~yt~~~w~lg~w~d~-~e~p~~ 228 (527) T protein:vir:10 150 STYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDR-PESPLE 228 (527) T ss_pred ceeeeeecCCCCCceeeEEEeeeccCCccccccceehhhhhhhhhcCcccccccCcceeeeeceeeccccccc-cccccc Confidence 99999865433 3444443 211122222222222 22222111111111 1223333211 111110000 111211 Q ss_pred -cccCCCCcceEE----cCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeecchH Q lcl|Aclame:pro 234 -ELYEGMQEKTYI----QGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRTVFVSDV 308 (517) Q Consensus 234 -~~~~~l~~~~~~----~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~ 308 (517) +-++.....++. ..++.+|+++|+ |.....+.+|.|++++.++++++||.+.|+..+.++.+..-|++-.. T Consensus 229 ~~~~~~~~~~~~l~~lp~pi~fiPvV~~~----t~p~~~~~WG~S~La~ll~l~deLn~~~Td~s~is~~sG~Pi~~~tg 304 (527) T protein:vir:10 229 PDDIKKLSTLTEEEPLPEQITTLPVFHFR----GHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDS 304 (527) T ss_pred hhhhhhhcCceeeecccCCCCccceEeec----CCCccccccChhhHhHHHHHHHHHhhhhhHHHHHHHHhCCceeeecc Confidence 001111111222 234556777773 34455678899999999999999999999999999987777776444 Q ss_pred HhccCCCCcccccCccCCcccceeeeecCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCcccccc-CCCccch Q lcl|Aclame:pro 309 MLRTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSF-DGRSMKT 387 (517) Q Consensus 309 ~l~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~-~~~~~~T 387 (517) +-..+..|.. .+. .-.. -..+..+++ ..+..++---.++.+...++.+.+.|...++++...||. +.++.-| T Consensus 305 ~~~vd~~G~~-~~~--~VgP---G~iweL~e~-ak~~~v~~~~~la~~~~h~~~L~~~l~~vA~~PavA~G~vD~s~~~S 377 (527) T protein:vir:10 305 APPRDSRGNM-VPW--TISP---LGMVEHGQN-NKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAES 377 (527) T ss_pred cccccccCCc-Ccc--ccCC---ceeEecCCC-cceeeccchhhhHHHHHHHHHHHHHHHHhhcCCeeeeccccCCcCcH Confidence 4222211111 100 0000 011222222 233333332255778888999999999999999999993 4456778 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhccCCCC-CCccceEEEeCCCccCCHHHHHHHHHHHHhc Q lcl|Aclame:pro 388 ATEIVSENDLTYRTRNDHVYEVEQFIKGLVI-SVLELAKTYKLFGGEI-PSAEHIGVDFDDGVFQDRSALLRFYGQAKTF 465 (517) Q Consensus 388 Atei~a~~~~~~~t~~~~~~~~~~al~~li~-~il~~~~~~~~~~~~~-~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~ 465 (517) +.++.-+.+.+++++.+++..|+...+++.+ -+..+..+|...+... .....++|.|.+.+|.|.++.++++.+++++ T Consensus 378 G~ALeL~L~PLlar~~rk~L~~~~Vqrq~~~~~~~~~L~aye~v~~~d~~~~~~v~ivf~p~lP~D~~avie~v~tL~~a 457 (527) T protein:vir:10 378 GIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEA 457 (527) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcccCCCccccceEEEecccCCCCHHHHHHHHHHHHHc Confidence 8888888899999999998888888877554 1222223333333322 2345789999999999999999999999999 Q ss_pred CCCCHHHHHHhhC--CCCHHHHHHHHHHHHHhccc------cCCCCCcc-ccCCCCCCCCC Q lcl|Aclame:pro 466 GFIPTVEAIQRIF--KVPKKTAEQWLEEIRKDQIE------LDPVTISQ-RAQKRMFGDEE 517 (517) Q Consensus 466 G~~S~~~~l~~~~--~~~eeea~~el~~i~~E~~~------~~~~~~~~-~~~~~~~G~ee 517 (517) |++|.++|+.++- |+ .+.+++|++||.+|.+. ....+.+. -.+.+..+++| T Consensus 458 GiiS~etAv~~L~~~~g-~eD~E~E~~~I~~era~~a~a~a~a~~~~~a~~~~~~g~~~~~ 517 (527) T protein:vir:10 458 GLIPAKKLTEELSKIMG-FELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEE 517 (527) T ss_pred CchhHHHHHHHHHhccC-CCchHHHHHHHHHHHHHHhHHhhhhcCchhhhhccccCCCCCC Confidence 9999999988762 22 22255666777655432 11122222 23444556666 No 73 >protein:vir:7430 Length: 563 # NCBI annotation: gp7 # Family: family:all:6920 # MgeID: mge:147 # MgeName: Barnyard # Cross-refs: genbank:acc:NP_818545;genbank:gi:29566982;genbank:GeneID:1260216 Probab=100.00 E-value=2.4e-30 Score=183.00 Aligned_cols=483 Identities=8% Similarity=0.024 Sum_probs=273.1 Q ss_pred HHH-Hhhc---ccchhhhccccCcCCHHHHHHHHHHHH---HhcCCCcccccccccCccccccccccCh--HHHHHHHHh Q lcl|Aclame:pro 14 GGY-ALSG---QTLKSINDHEKINIDPNELARIERNLR---QYEGDYPQVEYINSQGKIQERDYMTLNL--RKLSADVLS 84 (517) Q Consensus 14 ~~~-~~~~---~~~~~~~~~~~i~~~~~~~~~i~~~~~---~Y~g~~~~~~~~~~~~~~~~~~~~~ln~--~~~i~~~~A 84 (517) |++ .-.. +.+..-.+ .-.|++.-..|+..|+. ||.|+...+... ..| ++++.++. +++++++.+ T Consensus 1 m~~~~~q~~p~~~~fp~~~--a~wV~~~D~~RlaaY~ly~d~y~n~~~el~~i-l~G----~dr~~~~~ps~r~~V~~~~ 73 (563) T protein:vir:74 1 MPYNHKQYDPAKPFLRGGD--DNIVDENDKNRVRAYDLYENIYLNSAETLKLV-LRG----DDSVPILMPSGRKIVEAVH 73 (563) T ss_pred CCccccccCCCcccccccc--cccCCHHHHHHHHHHHHHHHhhcCchhhhhhh-cCC----CceeeeccchHHHHHHHHH Confidence 221 0001 11121121 23567777778877764 699987665421 111 13455555 569999988 Q ss_pred hhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeC-----CeeEEEEEc Q lcl|Aclame:pro 85 GLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDN-----GEIEFSWAL 159 (517) Q Consensus 85 ~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~-----g~~~i~~v~ 159 (517) .+| +++..|+|+....++. .....+.+|...++.+.+..++..+-.+|..+|+++|++.||. +++++.-|+ T Consensus 74 ~~L-g~~~~~~Ve~~~~de~---~~~avq~~Lr~~~~~e~l~~~~~~~~r~a~vlGDgvf~l~wDp~K~~g~R~rv~~vD 149 (563) T protein:vir:74 74 RFL-GVGFDYLVEPDMGDEG---IRQSLNAYFRTTFKREAIKAKFTSNKRWGLIRGDAHFYIHADPNKKAGERISVDEVD 149 (563) T ss_pred Hhc-CCCcEEecCccccCcc---hHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhcceeEEEeeccccccCCCceEeecC Confidence 666 9999999965543322 3356789999999999999999999999999999999999994 478999999 Q ss_pred CCeEEEEEEcCCceEEEEEEEE-E---EEEecCCcEEEEEE-EEEeecceeeccceEEEEEEEeecCCccccC-cccccc Q lcl|Aclame:pro 160 ANAFYPLRSNSNGISEGVMKSV-T---TKVIGNKTVYYTLL-EFHEWEKTEEGESLYVITNELYKSDNEGEIG-KRIPLE 233 (517) Q Consensus 160 a~~~~P~~~~~~~~~~~a~~~~-~---~~~~~~~~~~yt~l-E~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG-~~v~l~ 233 (517) |.++||+ .+-+.. .+++... . ....+.+++.+++- -+++++...-..|.|.-+-++|.-++=+..+ ..+... T Consensus 150 P~~~fp~-~dpd~v-~g~~~v~v~~~~~~pdd~~~~~~r~~~~~~~lndeg~~~~~~~~dae~w~lg~wd~r~~~~~~~~ 227 (563) T protein:vir:74 150 PRQIFLI-EDGSTV-VGFHMVDIVQDFRSPDDPSKKLARRRTFRRVRNDEGMFTGRISSELTHWTLGNWDDRGAISDEQA 227 (563) T ss_pred Cceeeec-cCCCCc-ccceeeecccCCCCCcchhccceeeeeeeeeeCCCCCccceeeeccchhccccccccCccchhhh Confidence 9999994 232222 2222111 0 01112222222210 1222221100011111111112111000000 000000 Q ss_pred cccCC-------CCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeecc Q lcl|Aclame:pro 234 ELYEG-------MQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRTVFVS 306 (517) Q Consensus 234 ~~~~~-------l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~ 306 (517) ...++ .+++.--..+..+++++|+ |.-...+.+|.|++++++++|++||.+.|...+.+..+..-|+|. T Consensus 228 ~~~~~~~~~~~d~e~~~LP~pi~~iPiv~~~----tip~~~s~WG~S~La~ll~~~~eLn~~~Td~s~i~~~tG~pi~vl 303 (563) T protein:vir:74 228 RRKEQVRSAQHDEEEEELPEPISQLPLYRWR----NKPPQNSSWGTSQLEGMETLAYALNQSLTDEDATIVFQGLGMYVT 303 (563) T ss_pred cccchhhhhhhhchhhhccccccCccEEEcC----CCCCcccccchhhHHHHHHHHHHHhhhhhHHHHHHHhcCCCeEEe Confidence 00000 0000000123444555553 333557889999999999999999999999999999988888886 Q ss_pred hHHhccCCCCcccccCccCCcccceeeeecCCCCCCcceEEecccChHHHHHHHHHHHH-HHHHHhCCCccccc--cCCC Q lcl|Aclame:pro 307 DVMLRTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALR-TLEMELKLSVGTFS--FDGR 383 (517) Q Consensus 307 ~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~-~i~~~~g~s~~~~~--~~~~ 383 (517) ++.-..++..+....-.. ..-..... ........+..++-.-.+.....+++.+.. -|...++++.-.|| +.+. T Consensus 304 ~~~~p~d~~~g~~~~w~v-gpG~i~El--~~~~~~g~l~~v~g~~~l~~~q~Hm~~l~eral~~~s~tPavA~G~vD~~~ 380 (563) T protein:vir:74 304 NASAPVDPNTGELTDWNI-GPMQIVEI--AGNRNDNYFERVSGVQDVSPFQDHMKWIDEKGIAEGSGTPEVAIGRVDVTS 380 (563) T ss_pred cccccccccccccccccc-CCceeEec--cCCccccceeeecchhhhHHHHHHHHHHHHHHHHhhccCcceeeccccccc Confidence 665554543333221000 00000001 111122345555544444555555665554 45666799999998 4332 Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhh-h------hccCCCCC-CccceEEEeCCCccCC Q lcl|Aclame:pro 384 SMKTATEIVSENDLTYRTRNDHVYEVEQFIKG----LVISVLELAKT-Y------KLFGGEIP-SAEHIGVDFDDGVFQD 451 (517) Q Consensus 384 ~~~TAtei~a~~~~~~~t~~~~~~~~~~al~~----li~~il~~~~~-~------~~~~~~~~-~~~~v~i~f~d~i~~d 451 (517) .-|+.+..-+-+.+.+++..++..|...+.+ ++...|..... + +.+++... ....|+|.|.+.+|+| T Consensus 381 -~~SGiALeL~L~PL~a~~~ek~l~l~~~mr~~r~~~~~~lL~~~erl~~~g~~~~~~g~~~~~~~~~v~ivf~p~~P~d 459 (563) T protein:vir:74 381 -AESGISLELQLKPLLAANEEKELEMIVVMDQFLHDWMTMWLPAYESDFQEQDGSRPFASADLLNECSVVCIFADPMPVN 459 (563) T ss_pred -ccchhhhhhhhhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcccccccccccCCceEEEEEeCCCCCcc Confidence 3344444444567788888877766666665 55444422221 1 11222222 2334789999999999 Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHhhC--CCCHHHHHHHHHHHHH--------hccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 452 RSALLRFYGQAKTFGFIPTVEAIQRIF--KVPKKTAEQWLEEIRK--------DQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 452 ~~~~~~~~~~~~~~G~~S~~~~l~~~~--~~~eeea~~el~~i~~--------E~~~~~~~~~~~~~~~~~~G~ee 517 (517) .++.+++...++++|++|.+||+.++- ||...+|+.|.++|+. -|++++..-+-+-.+.+..||+| T Consensus 460 ~~~vv~~~~tl~~aGiiSretAv~~L~~~g~~~pdae~e~~~ie~~~i~~~~~a~a~ad~~~~~~a~~~~g~~~~~ 535 (563) T protein:vir:74 460 KTQVTQDTLLLQQAHLILRKMAVAKLRSIGWEYPEVDDQGNALTDDDIADMLLAEAEADASLGLSAMDNGGAGEQQ 535 (563) T ss_pred HHHHHHHHHHHHHcCchhHHHHHHHHHhCCCCCCcHHHHHhhcCHHHHHHHHHHHhhccCcccceecccCCCCccc Confidence 999999999999999999999977662 6655556555555432 33444433333444555566666 No 74 >protein:vir:94956 Length: 452 # NCBI annotation: putative phage structural protein # Family: family:all:584 # MgeID: mge:1538 # MgeName: Xp15 # Cross-refs: genbank:acc:YP_239276;genbank:gi:66392058;genbank:GeneID:5076601 Probab=99.79 E-value=1.9e-17 Score=112.24 Aligned_cols=424 Identities=13% Similarity=0.056 Sum_probs=222.9 Q ss_pred ccchhhhccccCcCCHHHHHHHHHHHHH---hcCCCc-------ccccccccCcccccccc----ccChHHHHHHHHhhh Q lcl|Aclame:pro 21 QTLKSINDHEKINIDPNELARIERNLRQ---YEGDYP-------QVEYINSQGKIQERDYM----TLNLRKLSADVLSGL 86 (517) Q Consensus 21 ~~~~~~~~~~~i~~~~~~~~~i~~~~~~---Y~g~~~-------~~~~~~~~~~~~~~~~~----~ln~~~~i~~~~A~l 86 (517) .++. ...+++.+....|..+ |.|... -|.......+..-+.++ -.|..+.+++.++.+ T Consensus 1 m~V~--------~~hp~y~a~~~~W~~~rd~~~G~~~~r~~g~~YLpk~~~E~~~~Y~~rl~rA~~~n~~~~t~~~~~G~ 72 (452) T protein:vir:94 1 MPIE--------TKHPEYLAYENDWIDCRVASLGQREVKKKGVRFLPKLSGQTDDMYNAYKQRALFYSITSKTLSALSGM 72 (452) T ss_pred CCCC--------CcCHHHHHHHHHHHHHHHHhcChHHHHcCCcccCCCCCCCCHHHHHHHHhhccCCchHHHHHHHHhch Confidence 1111 1246677777777764 555421 11111111111111222 259999999999999 Q ss_pred hcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe--CCeeEEEEEcCCeEE Q lcl|Aclame:pro 87 VFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD--NGEIEFSWALANAFY 164 (517) Q Consensus 87 l~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d--~g~~~i~~v~a~~~~ 164 (517) +|.++|++.+++. . +.++.-..-+++...+...+..++..|.+++.+=|. +++|-|..++|.+++ T Consensus 73 vf~k~p~~~~p~~------------l-~~~~~D~~G~~L~~~~~~~~~~~l~~G~~~ilVD~p~~g~rPy~~~~~~~~Ii 139 (452) T protein:vir:94 73 VLDQPPVITHPDA------------M-SKYFEDQSGIQFYEVFTRAVEETLLMGRVGVFIDRPLTGGDPYISVYTTENIL 139 (452) T ss_pred hhcCCceecccHH------------H-HHHHhcccCCCHHHHHHHHHHHHHhcCeEEEEEeeccCCCceEEEEechhhhc Confidence 9999998865421 1 112222445688999999999999999998887665 467999999999987 Q ss_pred EEEEc-CCceEEEEEEEEEEEEecCC------cEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccccC Q lcl|Aclame:pro 165 PLRSN-SNGISEGVMKSVTTKVIGNK------TVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYE 237 (517) Q Consensus 165 P~~~~-~~~~~~~a~~~~~~~~~~~~------~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~ 237 (517) =-..+ .++.+..+|.......++.+ ...|+.|+. .+|.|++ .+|+..... ...+.+ T Consensus 140 ~W~~~~~g~l~~v~lre~~~~~d~~d~f~~~~~~~yRvL~l--------~~g~~~v--~~~~~~~~~----~~~~~~--- 202 (452) T protein:vir:94 140 NWEEDEDGRLLMVVLREFYTVRDTADRYVQNIRVRYRCLEL--------VDGLLQI--TVHETQDGK----VWELAK--- 202 (452) T ss_pred CccccccCCeeEEEEEEEEEEecCCCcccceeEEEEEEEEE--------eCCeEEE--EEEEccCCc----eeeecc--- Confidence 52222 33444444433222222221 123444432 1355665 345432221 111000 Q ss_pred CCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHH-hccceeecchHHhccCCCC Q lcl|Aclame:pro 238 GMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIK-MGQRTVFVSDVMLRTVPDE 316 (517) Q Consensus 238 ~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~-~~~~~i~v~~~~l~~~~~~ 316 (517) ...+..--+.++..||+++... .|.. -.|.|-+.++-.+--+.-..-|.+.+.+. .+.+..++. ...+. T Consensus 203 ~~~~~~~~~~l~~IP~v~~~~~-~~~~----~~~~pPLl~LA~ln~~hy~~~sd~~~~l~~~~~P~l~~~-----g~~~~ 272 (452) T protein:vir:94 203 TSTIQNVGVTMDYIPFFCITPS-GLSM----TPAKPPMIDIVDINYSHYRTSADLEHGRHFTGLPTPWIT-----GAESQ 272 (452) T ss_pred ceeecCCCcccceeEEEEEcCC-CCCC----CCCccchHHHHHHHHHHhcchhHHHHHHHHcccceeEee-----cCcCC Confidence 0011111245677788877432 1111 23566666666665555555566666664 444544442 11221 Q ss_pred cccccCccCCcccceeeeecCCCCCCcceEEecccCh-HHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHHHHHH Q lcl|Aclame:pro 317 SGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHDIRT-EQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVSEN 395 (517) Q Consensus 317 ~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~dir~-e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a~~ 395 (517) .+...+ .. ..+..++.+....+++|+-.. +++.+.++.+-+++.. .| ...+.-...+..|+++..... T Consensus 273 ~~i~iG----~~----~~~~lpe~~~~~~yie~~g~~i~~~~~~l~~le~~m~~-~G--a~ll~~~~~~~~s~ea~~~~~ 341 (452) T protein:vir:94 273 STMHIG----ST----KAWVIPEVAAKVGFLEFTGQGLQSLEKALSEKQAQLAS-LS--ARLIDNSTRGSEATETVKLRY 341 (452) T ss_pred CceEec----cc----ccccCCCCCCcceEEccCchhHHHHHHHHHHHHHHHHH-HH--HHhhccCCCcchHHHHHHHHH Confidence 111110 00 112333333346677777654 6677777666655433 22 122222222333444444444 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCCHHHHHH Q lcl|Aclame:pro 396 DLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTVEAIQ 475 (517) Q Consensus 396 ~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~~~l~ 475 (517) +...+....+...++.++.++++.+..+.. ........++-+|.+. ..+ ...++.+.+++.+|.||.++++. T Consensus 342 ~~~~s~L~~~a~~~e~al~~~l~~~a~w~g------~~~~~~v~~n~dF~~~-~~~-~~~~~al~~~~~~G~is~~t~~~ 413 (452) T protein:vir:94 342 MSETASLKSVTRAVEALLNKAYSCIMDMES------MGGTLNIKLNSAFLDS-KLT-AAELKAWVEAYLSGGISKEIYIH 413 (452) T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHcC------CCCceEEEeccccccc-cCC-HHHHHHHHHHHhcCCCcHHHHHH Confidence 444567777888888999988887776532 1111123334445442 223 46778888999999999998876 Q ss_pred hh--CCCCHHHHHHHHHHHHHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 476 RI--FKVPKKTAEQWLEEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 476 ~~--~~~~eeea~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) .+ -|+-+-+ +|.+++..|.....|...+.++++ +.| T Consensus 414 ~L~~~gvl~~~--~e~~~i~~E~~~~~~~~~~~~~~~----~~~ 451 (452) T protein:vir:94 414 ALKVGKVLPPP--GESMGVIPDPPAPEPSPSNTPPNP----SSK 451 (452) T ss_pred HHHhCCCCCCc--cCHHHHHHHhhccCcccCCCCCCC----ccC Confidence 44 2544322 334556666554555555544333 334 No 75 >protein:vir:97265 Length: 513 # NCBI annotation: hypothetical protein ORF013 # Family: family:all:584 # MgeID: mge:1657 # MgeName: M6 # Cross-refs: genbank:acc:YP_001294521;genbank:gi:149408242;genbank:GeneID:5237130 Probab=99.71 E-value=3.6e-15 Score=99.79 Aligned_cols=435 Identities=13% Similarity=0.041 Sum_probs=220.3 Q ss_pred hhcccchhhhccccCcCCHHHHHHHHHHHHH---hcCCCc-------ccccccccC--cccccc--ccccChHHHHHHHH Q lcl|Aclame:pro 18 LSGQTLKSINDHEKINIDPNELARIERNLRQ---YEGDYP-------QVEYINSQG--KIQERD--YMTLNLRKLSADVL 83 (517) Q Consensus 18 ~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~---Y~g~~~-------~~~~~~~~~--~~~~~~--~~~ln~~~~i~~~~ 83 (517) |.-..++++. ...+++.+....|+.+ |.|... .|....... ..+.|. ..-.|+.+.+++.+ T Consensus 1 m~~~~~~~v~-----~~h~~y~a~~~~W~~ird~~~G~~~~r~~g~~YLPk~~~E~~~~Y~~rl~rA~~~n~~~~tl~~l 75 (513) T protein:vir:97 1 MADKDPKSPA-----TTSGAYDQMLPRWHVIETLLGGTEAMREAGETYLPRHQEETDKGYQERLASAVLLNMVEQTLDTL 75 (513) T ss_pred CCCCCCCCCC-----cCCHHHHHHHHHHHHHHHHhcChHHHHhhcccCCCCCCCCCHHHHHHHHhcccCCChHHHHHHHH Confidence 2222333222 1246677777778764 666521 111111111 111111 12359999999999 Q ss_pred hhhhcCCcceeEecCcccccccccchhHHHH-HHH-HHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeC--C-------- Q lcl|Aclame:pro 84 SGLVFNEQCEVYVSDAKDEEKKDNSFKTAHE-FIQ-HVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDN--G-------- 151 (517) Q Consensus 84 A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~-~l~-~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~--g-------- 151 (517) +.++|.++|++....++ ...+ +++ --..-+++...++.++..++..|.+++-+=+.. + T Consensus 76 ~G~vf~k~p~~~~~~p~----------~~~~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~~~~~~~~~T 145 (513) T protein:vir:97 76 SGKPFSEPIKLNEDVPK----------AIEETILPDVDLQGNNLDVFARQWFREGMAKALCHVLIDMPRPAPREDGQPRT 145 (513) T ss_pred hhhhhhcCcccCcCchH----------HHHHHHhhccCCCCCCHHHHHHHHHHHHHhcCeEEEEEecCCCCCccchhHHh Confidence 99999999887532222 1111 111 112334788888899999999998887763321 1 Q ss_pred ---------eeEEEEEcCCeEEEEEE--cCCc-eEEEEEEEEEEEEecCC--cEE---EEEEEEEeecceeeccceEEEE Q lcl|Aclame:pro 152 ---------EIEFSWALANAFYPLRS--NSNG-ISEGVMKSVTTKVIGNK--TVY---YTLLEFHEWEKTEEGESLYVIT 214 (517) Q Consensus 152 ---------~~~i~~v~a~~~~P~~~--~~~~-~~~~a~~~~~~~~~~~~--~~~---yt~lE~h~~~~~~~~~~~y~I~ 214 (517) +|-|..+.|.+++=-.+ .+++ .+.-+.+ .+...+.++ .+. |+.|+ .|.|.| T Consensus 146 ~Ade~~~~~rPy~~~~~~e~IinW~~~~v~G~~~L~~v~l-~E~~~~~Dgf~~~~~~q~rvL~----------~g~~~v- 213 (513) T protein:vir:97 146 LADDRREGLRPYWVMIKPECLLFARSEVINGVEVLQHVRI-IEHYMEQDGFAEVCKRRIRVLE----------PGLVQL- 213 (513) T ss_pred HHHHHhhccCceEEEecHhhhcCcceeccCcceeeeeEEE-EEEEeecCCCcceEEEEEEEEe----------CceEEE- Confidence 37799999999874111 1222 2222222 222222221 222 22222 233443 Q ss_pred EEEeecCCcc-ccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHH Q lcl|Aclame:pro 215 NELYKSDNEG-EIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFW 293 (517) Q Consensus 215 n~ly~~~~~~-~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~ 293 (517) |+..... ..+.+..+ ...--++++.+||+++-.. .|.. --|.+-|-++-.+=.+.=...|.+- T Consensus 214 ---~r~~~~~~~~~~e~~~--------~~~g~~~l~~IP~v~~~~~-~~~~----~~~~pPLl~LA~ln~~hy~~~Sd~~ 277 (513) T protein:vir:97 214 ---WEPVKKSNAQKEEWAL--------ADEWATGLNYVPLVTFYAD-RQGF----MMGKPPLLDLAHLNVAHWQSASDQR 277 (513) T ss_pred ---EEeecCCCccccceEE--------ecCCCCcCCceeEEEEecC-CCCC----CCCccchHHHHHHHHHHHhhhhhHH Confidence 3322111 11111111 0111245777888877532 1211 1244445444444444434444444 Q ss_pred HHHH-hccceeecchHHhccCCCCcccccCccCCcccceeeeecCCCCCCcceEEecccCh-HHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 294 WEIK-MGQRTVFVSDVMLRTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHDIRT-EQYKEAINQALRTLEMEL 371 (517) Q Consensus 294 ~e~~-~~~~~i~v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~dir~-e~~~~~l~~~l~~i~~~~ 371 (517) ..+. .+.+..++.. + . ..+..+.. .-.. ..+..+..+....+++|+-.. +++.+.++.+-+++ ... T Consensus 278 ~il~~~~~P~l~~~G-~-~-~~~~~~i~----iG~~----~~~~lpe~~~~~~yie~~g~~i~~~~~~l~~le~qm-~~~ 345 (513) T protein:vir:97 278 HILTVSRFPILACSG-A-S-GEDSDPVV----VGPN----KVLYNPDPAGRFYYVEHTGQAIAAGRTDLKDLEEQM-AGY 345 (513) T ss_pred HHHHhcccceeeeec-C-C-cCCCCceE----eecc----ccccCCCCCCcceeeccCchhHHHHHHHHHHHHHHH-HHH Confidence 4453 4445555421 0 0 00001100 0000 112233334456778887654 55666676666655 333 Q ss_pred CCCccccccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCC Q lcl|Aclame:pro 372 KLSVGTFSFDGRSMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQD 451 (517) Q Consensus 372 g~s~~~~~~~~~~~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d 451 (517) |.. +-...++.+|||+.....+...+.+..+...++.||.++++.+..+... ........++-+|..... + T Consensus 346 Ga~---ll~~~~~~~Ta~a~~~~~~~~~S~L~~~a~~le~al~~~l~~~a~wlg~-----~~~~~~v~in~dF~~~~~-~ 416 (513) T protein:vir:97 346 GAE---FLKRKTGGQTATARALDSAEATSDLSAMTGLFEDALAQALDITADWLRL-----GPNGGTVELVKDYDLEEM-D 416 (513) T ss_pred HHH---hhccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCCccEEEeccccCcccC-C Confidence 322 2234556899999999999999999999999999999999988776421 110112334445654332 2 Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHhhC--CC-----CHH-HHHHHHHHHHHhcccc--CCCCCccccCCCCCCCCC Q lcl|Aclame:pro 452 RSALLRFYGQAKTFGFIPTVEAIQRIF--KV-----PKK-TAEQWLEEIRKDQIEL--DPVTISQRAQKRMFGDEE 517 (517) Q Consensus 452 ~~~~~~~~~~~~~~G~~S~~~~l~~~~--~~-----~ee-ea~~el~~i~~E~~~~--~~~~~~~~~~~~~~G~ee 517 (517) .+.++.++++..+|.||.++++..+- ++ +++ +-+++.+||.+..... +-.+.++.++.+..|.+| T Consensus 417 -~~~~~al~~a~~~G~is~~t~~~~L~r~gvl~~d~d~~~~~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 491 (513) T protein:vir:97 417 -APGLQALQVAREKRDISRKTYLNGLRLRGVLPEDFDEDEDWEELMEEISEAMGRAGLDLDPAQKNPPEGGEGEGE 491 (513) T ss_pred -HHHHHHHHHHHhCCCCCHHHHHHHHHhccCCCccCCHHHHHHHHHHhhhhccCCCCccccccCCCCCCCCCCCCC Confidence 45678889999999999998876543 43 222 3344555555443222 112223333333334444 No 76 >protein:vir:95149 Length: 501 # NCBI annotation: hypothetical protein ORF007 # Family: family:all:584 # MgeID: mge:1552 # MgeName: PA73 # Cross-refs: genbank:acc:YP_001293414;genbank:gi:148912835;genbank:GeneID:5228224 Probab=99.69 E-value=3.3e-14 Score=94.47 Aligned_cols=434 Identities=15% Similarity=0.061 Sum_probs=211.1 Q ss_pred cccC-cCCHHHHHHHHHHHHH---hcCCCc-------cccccccc-----Cc--ccccccc--ccChHHHHHHHHhhhhc Q lcl|Aclame:pro 29 HEKI-NIDPNELARIERNLRQ---YEGDYP-------QVEYINSQ-----GK--IQERDYM--TLNLRKLSADVLSGLVF 88 (517) Q Consensus 29 ~~~i-~~~~~~~~~i~~~~~~---Y~g~~~-------~~~~~~~~-----~~--~~~~~~~--~ln~~~~i~~~~A~ll~ 88 (517) -++| ...+++.+....|..+ |.|... .|...... ++ .+.+... -.|..+.+++.+..++| T Consensus 1 m~~V~~~hp~y~~~~~~W~~ird~~~G~~~~r~~g~~YLP~~~~e~~~~e~~~~Y~~rl~rA~~~n~~~~t~~~l~G~vf 80 (501) T protein:vir:95 1 MPNVSFIRPELGKLLPLYYLIRDAIAGEPTVKGARTTYLPMPNAEDQSKENKARYEAYLKRAVFYNVARRTLFGLVGQVF 80 (501) T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhcChHHHHhcccccCcCCCCCCCcccchHHHHHHhhccccCchHHHHHHHHhhhhh Confidence 2223 2246677777777754 666531 11111110 00 1111112 35999999999999999 Q ss_pred CCcceeEecCcccccccccchhHHHHHHHHH-HhhhhHHHHHHHHHHHHHhhCCEEEEEEEe--CC-------------- Q lcl|Aclame:pro 89 NEQCEVYVSDAKDEEKKDNSFKTAHEFIQHV-FQHNKFIKNLSDYLEPTFALGGLTVRPYVD--NG-------------- 151 (517) Q Consensus 89 ~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~-l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d--~g-------------- 151 (517) .++|++.++. ..+.+++.+ ..-+++...+..++..++..|.+++-+=+. .+ T Consensus 81 ~k~p~~~~p~------------~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~~~~~~t~a~~~~~~~ 148 (501) T protein:vir:95 81 MRDPVVKVPA------------LLNPLVANATGSGINLTQLAKRAVSLNLAYSRAGLLVDYPTTEAEGGASIADLEAGRI 148 (501) T ss_pred cCCcceeCcH------------HHHHHHhccCCCCCCHHHHHHHHHHHHHhcCeEEEEEeecCCCCcccccHHHHHhccC Confidence 9999885432 122222221 123478888899999999999888876442 11 Q ss_pred eeEEEEEcCCeEEEEEEc--CCc-eEEEEEEEEEEEEecCC------cEEEEEEEEEeecceeeccceEEEEEEEeecCC Q lcl|Aclame:pro 152 EIEFSWALANAFYPLRSN--SNG-ISEGVMKSVTTKVIGNK------TVYYTLLEFHEWEKTEEGESLYVITNELYKSDN 222 (517) Q Consensus 152 ~~~i~~v~a~~~~P~~~~--~~~-~~~~a~~~~~~~~~~~~------~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~ 222 (517) +|-|..++|.+++=-.++ .++ .+.-+.+.+.. .+.++ ...|+.|+.- .+|.|++ ++|+... T Consensus 149 rPy~~~~~~~~IinW~~~~v~g~~~l~~v~l~E~~-~~~d~~f~~~~~~q~RvL~~~-------~~g~~~~--~v~r~~~ 218 (501) T protein:vir:95 149 RPTLYVYSPTEIINWRTTDRGAEEVLSLVVLFETW-CAADDGFEMKTSGQFRVLRLD-------EEGYYVH--EIWREPQ 218 (501) T ss_pred CcEEEEecHhhhcCcceeccCCceeeeEEEEEEEE-eecCCCcccceeEEEEEEeeC-------CCceEEE--EEEEecC Confidence 377999999998741111 121 22222222222 22222 2345555431 2354443 4565322 Q ss_pred c-cccCcccccccccCCC---CcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHH----HHH Q lcl|Aclame:pro 223 E-GEIGKRIPLEELYEGM---QEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQ----FWW 294 (517) Q Consensus 223 ~-~~lG~~v~l~~~~~~l---~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~----~~~ 294 (517) . ..-|..++........ +..--.++++..||+++-.. .|.... |.+-|-++-. ++..+-+ +-+ T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IPfv~~~~~-~~~~~~----~~pPLl~lA~----lni~hy~~ssd~~~ 289 (501) T protein:vir:95 219 PTKADGSKIPKGNYQQYVVYKPTDAQGKRLTEIPFMFIGSE-NNDSNP----DNPNFYDLAS----LNMAHYRNSADYEE 289 (501) T ss_pred CcccCcceecCCcccccceeeeeccCCCcCCeeeEEEEecC-CCCCCC----CccchHHHHH----HHHHHHhhhhHHHH Confidence 1 1112222211111000 01111256777788866321 121111 2222222221 2222212 222 Q ss_pred HH-Hhccceeecch--HHhccCCCCcccccCccCCcccceeeeecCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 295 EI-KMGQRTVFVSD--VMLRTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMEL 371 (517) Q Consensus 295 e~-~~~~~~i~v~~--~~l~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~ 371 (517) .+ ..+.|..++.. +.-.......+ ..+.... .+..+ .+....+++++-..-+ .+.++.+-+++.. . T Consensus 290 ~l~~~~~P~l~i~G~~~~~~~~~~~~~----i~~G~~~----~~~lP-~~~~~~~ie~~~~~i~-~~~l~~l~~~m~~-~ 358 (501) T protein:vir:95 290 SCYIVGQPTPVLIGLTEEWVTNVLKGS----VNFGSRG----GIPLP-VGADAKLLQASENTML-KEAMDTKERQMVA-L 358 (501) T ss_pred HHHHcccceeeeeCCcccccccCCCCc----eeecccc----cccCC-CCCceeEEecChhhHH-HHHHHHHHHHHHH-H Confidence 33 24445444411 00000000011 1111110 11122 2223555666533222 3445544444322 2 Q ss_pred CCCccccccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEE--EeCCCcc Q lcl|Aclame:pro 372 KLSVGTFSFDGRSMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGV--DFDDGVF 449 (517) Q Consensus 372 g~s~~~~~~~~~~~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i--~f~d~i~ 449 (517) | ...+ ...++.+|||+.....+...+.+..+...++.|+.++++.++.+.. ..+....|.+ +|... T Consensus 359 G--a~ll-~~~~~~~Ta~~~~~~~~~~~S~L~~~a~~le~al~~~l~~~a~w~g-------~~~~~~~v~i~~df~~~-- 426 (501) T protein:vir:95 359 G--AKLV-EQKEVQRTATEAELEAASEGSTLSSATKNVSAAFEWALKWAARWVG-------QADSGVKFELNTDFDIA-- 426 (501) T ss_pred H--Hhhc-cCCccchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHcC-------CCCCceEEEEecccccc-- Confidence 2 2222 2344678999998888888888999999999999999998776632 1122233444 45432 Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHhh--CCCCHHHHHHHHHHHHHhccccCCC--CCccccCCCCC----CCCC Q lcl|Aclame:pro 450 QDRSALLRFYGQAKTFGFIPTVEAIQRI--FKVPKKTAEQWLEEIRKDQIELDPV--TISQRAQKRMF----GDEE 517 (517) Q Consensus 450 ~d~~~~~~~~~~~~~~G~~S~~~~l~~~--~~~~eeea~~el~~i~~E~~~~~~~--~~~~~~~~~~~----G~ee 517 (517) ....+.++.+.+++.+|.||.++++..+ -++.+++.+++.++|..|..+.++. ..+. +..+.+ |.-| T Consensus 427 ~~~~~~~~al~~~~~~G~is~~t~~~~L~~~~v~~~~~~~e~e~i~~~~~~~~~~~~~~~~-~~~~~gg~~~~~~~ 501 (501) T protein:vir:95 427 RMTPDERRSLVEEWQKGAITFEEMRTGLRKAGVATEDDSKAKEKIAKDTAEAMALATPANV-PGDGSGGDNVGNSE 501 (501) T ss_pred cCCHHHHHHHHHHHhCCCCcHHHHHHHHHhCCCCChhHHHHHHHHHhhhcCcccccccCCC-CCCCcccccccCCC Confidence 2234567778899999999999986533 3666555566677776655443221 1111 111111 2223 No 77 >protein:vir:8846 Length: 705 # NCBI annotation: putative portal protein # Family: family:all:1548 # MgeID: mge:158 # MgeName: PaP3 # Cross-refs: genbank:acc:NP_775254;genbank:gi:27476052;genbank:GeneID:2700600 Probab=99.61 E-value=4.5e-14 Score=93.75 Aligned_cols=466 Identities=13% Similarity=0.063 Sum_probs=202.1 Q ss_pred CchH---HHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccChHH Q lcl|Aclame:pro 1 MKVI---QRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLRK 77 (517) Q Consensus 1 m~~~---~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~~ 77 (517) |.-= ..++..++.... . .+........+|..||.|++.+.. .+| +.....+.-. T Consensus 10 ~~~~~~~~~~~~~~~~a~~---------~-------~~~~~~~~~~~~~~~y~g~~~~~~---~~~----~s~~~~~~v~ 66 (705) T protein:vir:88 10 MDDEQVLRHLDQLVNDALD---------F-------NSSELSKQRSEALKYYFGEPFGNE---RPG----KSGIVSRDVQ 66 (705) T ss_pred CCHHHHHHHHHHHHHHHHh---------h-------hhhHHHHHHHHHHHHHhCCCCCcc---cCC----CCccccHHHH Confidence 1111 111122211100 0 011222345667789999864421 111 1122222222 Q ss_pred ----HHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHH-HhhhhHHHHHHHHHHHHHhhCCEEEEEEEeC-- Q lcl|Aclame:pro 78 ----LSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHV-FQHNKFIKNLSDYLEPTFALGGLTVRPYVDN-- 150 (517) Q Consensus 78 ----~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~-l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~-- 150 (517) .|...+-+.+++-..-+.+. +....+....+..++.++-+ .+.|+....+..++.+|+..|.+++|+||+. T Consensus 67 ~~v~~~~~~l~~~~~~~~~~~~~~--p~~~~D~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~dal~~g~gi~kv~we~~~ 144 (705) T protein:vir:88 67 ETVDWIMPSLMKVFTSGGQVVKYE--PDTAEDVEQAEQETEYVNYLFMRKNEGFKVMFDWFQDTLMMKTGVVKVYVEEVL 144 (705) T ss_pred HHHHHHHHHHHHhhcCCCceEEEe--eCChhHHHHHHHHHHHHhHHHhhccchhHHHHHHHHHHhhcCCeEEEecccccc Confidence 22222333344433333332 12222333445555666664 3444556778899999999999999999953 Q ss_pred -----------------------------------------------CeeEEEEEcCCeEEEEEEcCCceEEEEEEEEEE Q lcl|Aclame:pro 151 -----------------------------------------------GEIEFSWALANAFYPLRSNSNGISEGVMKSVTT 183 (517) Q Consensus 151 -----------------------------------------------g~~~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~ 183 (517) |+++|+.|+|..|++ .-+..+...+.|++... T Consensus 145 ~~~~e~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~V~p~d~~~-dp~a~~~~d~~~~~~~~ 223 (705) T protein:vir:88 145 KPTFERFSGLSEDMVADILSDPDTSILAQSVDDDGTYTIKIRKDKKKREIKVLCVKPENFLV-DRLATCIDDARFLCHRE 223 (705) T ss_pred chhhhhhccCChhhhhhhhhhhhhhcccccccccceeeeEEeeeeecCceeeeeccHHHcee-cCCCCCcccCcEEEEEE Confidence 567889999999884 11222333333322211 Q ss_pred -EEecC------CcEEEEEEEEEeecc---------------e--------eeccceE-EEEEEEeecCCccccCccccc Q lcl|Aclame:pro 184 -KVIGN------KTVYYTLLEFHEWEK---------------T--------EEGESLY-VITNELYKSDNEGEIGKRIPL 232 (517) Q Consensus 184 -~~~~~------~~~~yt~lE~h~~~~---------------~--------~~~~~~y-~I~n~ly~~~~~~~lG~~v~l 232 (517) .+..+ .......+..|.+.. . .+...+. +..++.|..-+...-|...+. T Consensus 224 ~~t~~dl~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~~~~d~~~~~~~~~~~~~~~~r~v~~~E~y~~~d~~~d~~~~~~ 303 (705) T protein:vir:88 224 KYTVSDLRLLGVPEDVIEELPYDEYEFSDSQPERLVRDNFDMTGQLQYNSGDDAEANREVWASECYTLLDVDGDGISELR 303 (705) T ss_pred eccHHHHHhhcCChhHhhhhhcccccchhhhhhhccccccccccccccccccccCCceeEEEEEeeeEecccCCcceeeE Confidence 10000 000000000110000 0 0000011 112333321111111111111 Q ss_pred ccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHH-HhccceeecchHHhc Q lcl|Aclame:pro 233 EELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEI-KMGQRTVFVSDVMLR 311 (517) Q Consensus 233 ~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~-~~~~~~i~v~~~~l~ 311 (517) .-.+.+- .-..+..++++||+.+++ . ..+++.+|.|+++.+.++++.+|..++++++.+ ..+.+++.|+.+++. T Consensus 304 ~~~~~g~-~il~~~~~~~~PF~~~~~-~---p~~~~~~G~g~~~~~~d~Q~~~n~~~~~~~d~~~~~~~~~~~~~~g~v~ 378 (705) T protein:vir:88 304 RILYVGD-YIISNEPWDCRPFADLNA-Y---RIAHKFHGMSVYDKIRDIQEIRSVLMRNIMDNIYRTNQGRSVVLDGQVN 378 (705) T ss_pred EEEEeCc-cccccccCCCCCEEEecc-e---eecCccccCChHHHHhHHHHHHHHHHHHHHHHHHhccCCceeccccccC Confidence 1111110 000112345667776532 1 244778999999999999999999999999988 467888998887763 Q ss_pred cCCCCcccccCccCCcccceeeeecCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCC---CccchH Q lcl|Aclame:pro 312 TVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDG---RSMKTA 388 (517) Q Consensus 312 ~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~---~~~~TA 388 (517) ...... +.+.. + +... .+..+..+++.=.....+..++.+...+...+|++.-..|.+. ++..|| T Consensus 379 ~~d~~~-------~~pg~-v---v~~~-~~~~i~~~~~~~~~~~~~~ll~~~~~~~~~~tGi~~~~~G~~~~~~~~~~Ta 446 (705) T protein:vir:88 379 LEDLLT-------NEAAG-I---VRVK-SMNSITPLETPQLSGEVYGMLDRLEADRGKRTGITDRTRGLDQNTLHSNQAA 446 (705) T ss_pred cccccc-------cCCCe-e---EEec-CCCccccccCCcCcHHHHHHHHHHHHHHHHhhCCchHHcCCCcccccchhhH Confidence 211100 00010 1 1111 1123444443333345667777777788889999988888553 345789 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhccCCC----------------CCCccceEEEeCCCccCC Q lcl|Aclame:pro 389 TEIVSENDLTYRTRNDHVYEVE-QFIKGLVISVLELAKTYKLFGGE----------------IPSAEHIGVDFDDGVFQD 451 (517) Q Consensus 389 tei~a~~~~~~~t~~~~~~~~~-~al~~li~~il~~~~~~~~~~~~----------------~~~~~~v~i~f~d~i~~d 451 (517) +++.......-.....+.+.|. .++++|++.++++...+ +... ......|.++-+-+ ..+ T Consensus 447 ~~i~~~~~~~~~r~~~~~r~~a~~~~~~l~~~~~~li~~~--~~~~~~~ri~g~~v~v~~~~~~~~~~v~v~v~~~-~~~ 523 (705) T protein:vir:88 447 MSVNQLMTAAEQQIDLIARMFAETGVKRLFQLLHDHAIKY--QNQEEVFQLRGKWVAVNPANWRERSDLTVTVGIG-NMN 523 (705) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCceEEeeccchhccchHhhccCCceEEeeccc-cch Confidence 8887777665555666666664 56777777777765543 1110 00122233332211 112 Q ss_pred HHHHHHHHHHHH---hcCCCCHHHHHHhhCC-CCHHHHHHHHHHHHHh-------ccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 452 RSALLRFYGQAK---TFGFIPTVEAIQRIFK-VPKKTAEQWLEEIRKD-------QIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 452 ~~~~~~~~~~~~---~~G~~S~~~~l~~~~~-~~eeea~~el~~i~~E-------~~~~~~~~~~~~~~~~~~G~ee 517 (517) .+...+.+..+. +...... .+.+ .+..+..+.+.++.+. +...++....+....-...-.| T Consensus 524 ~eq~~a~l~~ll~~~q~l~~~~-----~~~~~~~~~~~~~~~~el~e~~~~k~~~~~~~~~~~~e~~~~~~~~~q~e 595 (705) T protein:vir:88 524 KDQQMLHLMRIWEMAQAVVGGG-----GLGVLVSEQNLYNILKEVTENAGYKDPDRFWTNPNSPEALQAKAIREQKE 595 (705) T ss_pred HHHHHHHHHHHHHHHHHhhccc-----chhhhcChHHHHHHHHHHHHhhhhhhHHHHhhhhhhHHHHHHHHhhhhhh Confidence 222222222221 1100000 0000 0111111111111000 0000000000000000000000 No 78 >protein:vir:93630 Length: 776 # NCBI annotation: Bcep22gp51 # Family: family:all:487 # MgeID: mge:1470 # MgeName: Bcep22 # Cross-refs: genbank:acc:NP_944280;genbank:gi:38640357;genbank:GeneID:2658279 Probab=99.60 E-value=1.5e-13 Score=90.84 Aligned_cols=468 Identities=11% Similarity=0.048 Sum_probs=229.1 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccChHHHHH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLRKLSA 80 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~~~i~ 80 (517) -.++++|+.++++-.. -..+.+....+..+||.|++.. ......-+-..+...+.|+-+.++ T Consensus 44 ~~~~~~l~~~~~~~~~-----------------~~~~~r~~a~~d~~fy~G~Qw~-~~~~~~l~~~g~p~~~~N~i~~~i 105 (776) T protein:vir:93 44 VELHSRLLSYYRQELS-----------------RQQDNRAEMAVDEDYYDNIQWS-QDEIDELKERGQAPTVYNVISQSV 105 (776) T ss_pred HHHHHHHHHHHHHHHh-----------------hchHHHHHHHHHHHHhCCCCCC-HHHHHHHHhcCCceEEecchHHHH Confidence 2355555555543211 1233455566788999998532 111110111234457788888888 Q ss_pred HHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeC----CeeEEE Q lcl|Aclame:pro 81 DVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDN----GEIEFS 156 (517) Q Consensus 81 ~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~----g~~~i~ 156 (517) ........+-.+.+.+.-. ...+.+..+.++..++.+.+.|++......+..+++.+|.||++++||. +.+.+. T Consensus 106 ~~v~g~~~~nr~~~~~~p~--~~~d~~~Ae~l~~~~~~~~~~~~~~~~~~~af~d~~~~G~G~~~v~~d~~~~~~~~~~~ 183 (776) T protein:vir:93 106 NWIIGSEKRGRSDFKVLPR--RKDGGKAAERKTALLKYLSDVNHTPFERSMAFEETTKAGIGWLESQVQDENDGEPIYAG 183 (776) T ss_pred HHHHHHHHhCCcceEEecC--ChhHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHhhhcCcceEEEEeeccCCCCceEee Confidence 8888877777777777432 2334455677788888899999999999999999999999999999984 345667 Q ss_pred EEcCCeEEEEEEcCC--ceEEEEEEEEEEEEe------------------------------------------------ Q lcl|Aclame:pro 157 WALANAFYPLRSNSN--GISEGVMKSVTTKVI------------------------------------------------ 186 (517) Q Consensus 157 ~v~a~~~~P~~~~~~--~~~~~a~~~~~~~~~------------------------------------------------ 186 (517) ++++..|++ ..+.. ....|-++++..... T Consensus 184 ~~~p~~i~~-Dp~a~~~D~sDar~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (776) T protein:vir:93 184 AESWRNILW-DSTYRRLDMDDCRYIFRVKWVDLDVMLAIFPERAAQLRAAAVDNFETWGTDDIDGDDAMDSPEYERSMNS 262 (776) T ss_pred ccChhheee-ccccccCCHHHHhhhhhhccCCHHHHHHhcCCchHHHHHhhhhcccccchhccccccccccccccccccc Confidence 889888875 11111 112222221111000 Q ss_pred ------cCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcc----------------cccccccCCCCcceE Q lcl|Aclame:pro 187 ------GNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKR----------------IPLEELYEGMQEKTY 244 (517) Q Consensus 187 ------~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~----------------v~l~~~~~~l~~~~~ 244 (517) ....+..+..|+++... +...++...+.+..+.. +.+....-......+ T Consensus 263 ~~~~~~~~~~~~v~v~E~~~r~~---------~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~v~~~~ 333 (776) T protein:vir:93 263 VTAGAVAYARKRVRMIEAWFRMP---------VRVQRLKGRNSDFRGEVFDPNDERHVLEVESGRAVLAVSPMMRMHCAI 333 (776) T ss_pred ccccccccCCCeEEEEEEEEeee---------eehhhcccccccccceeecccchHHHHHhhcCceeehheeeeeeEEEE Confidence 00001112222221100 00000111111000000 000000000000001 Q ss_pred EcC------------CCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeecchHHhcc Q lcl|Aclame:pro 245 IQG------------LSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRTVFVSDVMLRT 312 (517) Q Consensus 245 ~~g------------~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~l~~ 312 (517) +.| .++.+|++| .......+.+|.|++..+++..+.+|...|++.+.+ +..+++++++.+.. T Consensus 334 ~~g~~~l~~~~~p~~~~~~Pfv~~----~~~~~~~~~~~~G~v~~~~d~Q~~~N~~~s~~~~~l--~~~~~~~~~gav~~ 407 (776) T protein:vir:93 334 MTTRDLMWAGPSPYRHNRYPFTPI----WGFRRARDGMPYGVIRFMRGMQDDVNKRLSKALYIL--STNKVLMEEGAVDD 407 (776) T ss_pred EecchhhhccCCCCCCCccceEEe----cCceecccccccchHHhhhHHHHHHHHHHHHHHHhh--cCCceeeccccccc Confidence 111 123345544 233455677899999999999999999999998876 45568887766543 Q ss_pred CCCCcccccCccCCcccceeeeecCCCCCCcceE-EecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHH Q lcl|Aclame:pro 313 VPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKD-VTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEI 391 (517) Q Consensus 313 ~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~-~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei 391 (517) ....-. ..+..+ .++. ++ ++....+.. ..+++. .+++..++.....|...+|++...+|..+. ..++..+ T Consensus 408 ~d~~~~----~~~rp~-~vi~-~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~tGi~~~~~G~~~n-~~Sg~ai 478 (776) T protein:vir:93 408 IDEFRR----EAARPD-AVMT-VK-NGKLGAVKMDVDRDLA-PAHLELASRSIQMIQQVGGVTDEMLGRTTN-AVSGVAI 478 (776) T ss_pred hHHHHH----hcccCC-ceee-eC-CccccccccccCcCcc-HHHHHHHHHHHHHHHHhhCcChHHhCCCcc-hhhHHHH Confidence 211000 001101 1111 11 111112221 234443 578888988888899999999999996653 3456667 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----cc---CCCC-------------C----CccceEEEeCCC Q lcl|Aclame:pro 392 VSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYK----LF---GGEI-------------P----SAEHIGVDFDDG 447 (517) Q Consensus 392 ~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~----~~---~~~~-------------~----~~~~v~i~f~d~ 447 (517) .++..........+.+.+..+++++.+.++.+...+- .+ +... + ..++|+|+=..+ T Consensus 479 ~~~~~~~~~~~~~~~dn~~~~~~~~~~~~l~li~~~~~~~r~~ri~~~~~~~~~v~in~~~~~nd~~~~~~dv~v~~~~~ 558 (776) T protein:vir:93 479 QARQEQGSVATNKLFDNLRLAFQQHGEKELSLIEQYMTEEKQFRITNSRGNPEYVTVNDGLPENDITRTKADFIIDEAEW 558 (776) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceEEEEeecCCCcceEEecccchhhhhccceeeEEEeeccc Confidence 6666666666777777788888888888777665431 00 1000 0 112333332222 Q ss_pred ccCCHHHHHHHHHHHHhcCCCCHH------HHHHhhCCCCHHHHHHHHHHHHHhccccCCCCCcccc---------CCCC Q lcl|Aclame:pro 448 VFQDRSALLRFYGQAKTFGFIPTV------EAIQRIFKVPKKTAEQWLEEIRKDQIELDPVTISQRA---------QKRM 512 (517) Q Consensus 448 i~~d~~~~~~~~~~~~~~G~~S~~------~~l~~~~~~~eeea~~el~~i~~E~~~~~~~~~~~~~---------~~~~ 512 (517) ...=.++..+.++++.. .+... ..+..+-++.. +.+.++++++-+...+|......+ .... T Consensus 559 ~~s~r~~~~~~l~ql~~--~~~p~~~~~~~~~~~e~~d~p~--~~e~~~~l~~~~~~~~p~q~~~~~e~~~~qq~q~~~~ 634 (776) T protein:vir:93 559 RATMRQAAVAELMEVIG--KMPPEIALTMLDLLVENMDIPN--RDELVKRIRAVNGQKDPDQDEPTPEEIAREQAQQQQQ 634 (776) T ss_pred chhHHHHHHHHHHHHHh--hcChhhHHHHHHHHHHhcCccc--hHHHHHHHHHhhcccccchhhcchhHHHHHHHhhHHH Confidence 11112333444444432 12221 11222222221 222333443333222221111000 0000 Q ss_pred CCC--------CC Q lcl|Aclame:pro 513 FGD--------EE 517 (517) Q Consensus 513 ~G~--------ee 517 (517) ... ++ T Consensus 635 q~q~~~~~a~~~~ 647 (776) T protein:vir:93 635 QYNDALAIATLEE 647 (776) T ss_pred HHHHHHhhhhhhH Confidence 000 00 No 79 >protein:vir:80453 Length: 535 # NCBI annotation: BcepGomrgp05 # Family: family:all:584 # MgeID: mge:1882 # MgeName: BcepGomr # Cross-refs: genbank:acc:YP_001210225;genbank:gi:146329917;genbank:GeneID:5123562 Probab=99.54 E-value=1.9e-12 Score=84.87 Aligned_cols=442 Identities=11% Similarity=0.047 Sum_probs=198.4 Q ss_pred CchH-------HHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCc--cccc--c Q lcl|Aclame:pro 1 MKVI-------QRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGK--IQER--D 69 (517) Q Consensus 1 m~~~-------~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~--~~~~--~ 69 (517) |.=+ ...+.-++.+..++... .+|.....-|-=+++- .....+++ .+.+ + T Consensus 32 m~dV~~~hp~y~a~~~~W~~ird~~~G~------------------~~~r~~g~~YLP~~~~-~~~~~E~~~~Y~~rl~r 92 (535) T protein:vir:80 32 LPNVGYQRVEFGEMLPKWRKIMDCLSGQ------------------EAIKAKREEYLPMPSV-DSRDEEQRRRYETYLQR 92 (535) T ss_pred CCCCCcCCHHHHHHHHHHHHHHHHhcCh------------------HHHHhcccccCCCCCc-ccCCcCCHHHHHHHHhh Confidence 4432 12222222222221110 0011100011000000 00000000 0000 1 Q ss_pred ccccChHHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHH-HhhhhHHHHHHHHHHHHHhhCCEEEEEEE Q lcl|Aclame:pro 70 YMTLNLRKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHV-FQHNKFIKNLSDYLEPTFALGGLTVRPYV 148 (517) Q Consensus 70 ~~~ln~~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~-l~~n~f~~~~~~~~~~a~~~G~~~~k~~~ 148 (517) ..-.|+.+.+++.++.++|.++|++.++. .++.+++.+ .+-+++...+..++..++..|.+++-+=+ T Consensus 93 A~~~n~~~~tl~~l~G~vfrk~p~~~~p~------------~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~iLVD~ 160 (535) T protein:vir:80 93 AIFYNVTARTLDGMMGQVFSRDPIRQLPP------------ALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDY 160 (535) T ss_pred ccCCChhHHHHHHHhchhhcCCcceeccH------------HHHHHHhccCCCCCCHHHHHHHHHHHHHhcCeEEEEEee Confidence 12348899999999999999998875532 122222211 22347888889999999999998887744 Q ss_pred eC-C-------------eeEEEEEcCCeEEEEEEcC----Cc-eEEEEEEEEEEEEecC-----CcEEEEEEEEEeecce Q lcl|Aclame:pro 149 DN-G-------------EIEFSWALANAFYPLRSNS----NG-ISEGVMKSVTTKVIGN-----KTVYYTLLEFHEWEKT 204 (517) Q Consensus 149 d~-g-------------~~~i~~v~a~~~~P~~~~~----~~-~~~~a~~~~~~~~~~~-----~~~~yt~lE~h~~~~~ 204 (517) .. + +|-|..+.|.+++= |+. ++ .+.-+.+.++....++ ...+|+.|+.. T Consensus 161 P~~~~~~t~ade~~~~~rPy~~~y~ae~Iin--W~~~~v~G~~~Lt~v~lrE~~~~~dd~f~~~~~~q~RvL~~~----- 233 (535) T protein:vir:80 161 PNVGRPVTVLEQKLGLYRPTITLVHPTSIIN--WRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLN----- 233 (535) T ss_pred cCCCCcccHHHHHhcCCCcEEEEechhhccC--ccccccCCccceeEEEEEEEEEecCCCcccceeEEEEEEEec----- Confidence 31 1 37799999999874 332 22 2333333333222221 12346665542 Q ss_pred eeccceEEEEEEEeecCCccccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHH Q lcl|Aclame:pro 205 EEGESLYVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKK 284 (517) Q Consensus 205 ~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~ 284 (517) .+|.|+++ +|+...... ......++ .++..-.+.++..||+++... .|... .|.+-|-++-.+--+ T Consensus 234 --~~G~y~v~--~~~~~~~~~--~~~~~~~~---~~~~~g~~~l~~IPfv~~~~~-~~~~~----~~~pPLl~LA~lni~ 299 (535) T protein:vir:80 234 --AEGNYQVE--RWRRETQEE--MYYSYSKH---VPTDGNGNPFKEIPFQFIGPL-DNNAD----IDHPPLLDLCEVNIG 299 (535) T ss_pred --CCceEEEE--EEEeecCCc--ccccccee---ecccCCCcccCeeEEEEeecC-CCCCC----CCccchHHHHHHHHH Confidence 34667764 454322211 11111111 111122355777788877422 12111 233333333333222 Q ss_pred HHHHHHHHHHHHH-hccceeecc--hHHhcc-CCCCcccccCccCCcccceeeeecCC-CCCCcceEEecccChHHHHHH Q lcl|Aclame:pro 285 INDTYDQFWWEIK-MGQRTVFVS--DVMLRT-VPDESGMPPPQVFDPDVNVYKSIRMG-TDEEFVKDVTHDIRTEQYKEA 359 (517) Q Consensus 285 lD~~~s~~~~e~~-~~~~~i~v~--~~~l~~-~~~~~~~~~~~~fd~~~~~y~~~~~~-~~~~~v~~~~~dir~e~~~~~ 359 (517) .=..-|.+.+.+. .+.+..++. ...... ...+.+...+ .. ..+..+ +++.++-.+++.--. .+. T Consensus 300 Hy~~ssd~~~il~~~~~P~l~i~G~~~~~~~~~~~~~~i~iG----~~----~~~~lP~~~~~~~~e~~~~~~a---~~~ 368 (535) T protein:vir:80 300 HYRNSADYEEMAFVAGQPTAFFTGLTKDWVEDVFKDFKVHLG----SR----AIIPLPQGATAGILQITPNSVP---FEA 368 (535) T ss_pred HhhchhHHHHHHHHhcCceeeeecCchhhhhcCCCCcceEec----Cc----ccccCCCCCCcceeeeccchhH---HHH Confidence 1111122333343 445555552 111100 0000111110 00 112222 223334444443211 223 Q ss_pred HHHHHHHHHHHhCCCccccccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCC-CCcc Q lcl|Aclame:pro 360 INQALRTLEMELKLSVGTFSFDGRSMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEI-PSAE 438 (517) Q Consensus 360 l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~-~~~~ 438 (517) ++.+-+++.. ++...+ ....+..|||+.+-..+...+.+..+...++.|+.++++.+..+. +... .... T Consensus 369 l~~~e~qM~~---lGa~ll-~~~~~~~Ta~~a~~~~~~~~S~L~~~a~~le~al~~aL~~~A~w~------G~~~~~~~~ 438 (535) T protein:vir:80 369 MTHKESQMIA---MGANLL-VKSGGNRTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQ------TGIVNDETV 438 (535) T ss_pred HHHHHHHHHH---HHHHhh-ccCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHc------CCccCCCce Confidence 3333322211 222222 233467888888777777778888899999999999888776552 2111 1223 Q ss_pred ceE--EEeCCCccCCHHHHHHHHHHHHhcCCCCHHHHHHhh--CCCC--HHHHHHHHHHHHHhccccCCC--------CC Q lcl|Aclame:pro 439 HIG--VDFDDGVFQDRSALLRFYGQAKTFGFIPTVEAIQRI--FKVP--KKTAEQWLEEIRKDQIELDPV--------TI 504 (517) Q Consensus 439 ~v~--i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~~~l~~~--~~~~--eeea~~el~~i~~E~~~~~~~--------~~ 504 (517) +|+ -+|.+. ..|. .+++.+.+++++|.||.++++..+ -++- +..-++|..||..|....... .. T Consensus 439 ~i~~n~dF~~~-~ld~-~~~~all~~~~~G~Is~et~~~~L~r~gvl~~~~~~eee~~ri~~E~~~~~~~~g~~~d~~~~ 516 (535) T protein:vir:80 439 EYNLNTDFPAA-RLTP-NERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASG 516 (535) T ss_pred EEEeccccccc-cCCH-HHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCcccchHHHHHHHHhhhhhccccCCCCCCCCCC Confidence 333 456542 3343 467778899999999999987643 2442 122355677787763221111 11 Q ss_pred cc---ccCCCCCCCCC Q lcl|Aclame:pro 505 SQ---RAQKRMFGDEE 517 (517) Q Consensus 505 ~~---~~~~~~~G~ee 517 (517) ++ ..+.|..|.-- T Consensus 517 g~~~~~~~~~~~~~~~ 532 (535) T protein:vir:80 517 GTNKAKLNNGNGGGNQ 532 (535) T ss_pred CCCcCcccCCcccccc Confidence 11 11112222211 No 80 >protein:vir:80165 Length: 651 # NCBI annotation: portal protein # Family: family:all:1548 # MgeID: mge:1878 # MgeName: Pf-WMP3 # Cross-refs: genbank:acc:YP_001285799;genbank:gi:148747833;genbank:GeneID:5220441 Probab=99.47 E-value=2.9e-12 Score=83.81 Aligned_cols=470 Identities=11% Similarity=0.057 Sum_probs=192.7 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCc--CC------HHHHH-HHHHHH---HHhcCCCccccccc-------c Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKIN--ID------PNELA-RIERNL---RQYEGDYPQVEYIN-------S 61 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~--~~------~~~~~-~i~~~~---~~Y~g~~~~~~~~~-------~ 61 (517) |+|= .+-+. +.++...+..+|. +. .++.. ....|. ++|.+....+.|+. . T Consensus 1 ~~~~----------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~w~~~~~~~~~~~~~~~y~~~~~~~~~~ 69 (651) T protein:vir:80 1 MKLA----------TTTTD-KNRQTYDETHDVSSYVKKEYKRFCDARQVCEETWLEAWGMYLSTPEAQDYLRDQVLRSVG 69 (651) T ss_pred Cccc----------ccccc-hhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcccHHHHHhhccccccccC Confidence 1110 00000 0000000000000 00 00000 112342 34444322222211 1 Q ss_pred cCccccccccccChHHHHHHH----HhhhhcCCcceeEecCcccccccccchhHHHHHHHHH----HhhhhHHHHHHHHH Q lcl|Aclame:pro 62 QGKIQERDYMTLNLRKLSADV----LSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHV----FQHNKFIKNLSDYL 133 (517) Q Consensus 62 ~~~~~~~~~~~ln~~~~i~~~----~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~----l~~n~f~~~~~~~~ 133 (517) ..+...|.+...|.....+.. +-+.+|+...-+.+.. ..+ .+.....++.++.+ +..++|......++ T Consensus 70 ~~~~~~rs~~~~~~v~~~ve~~~~~l~~~~~~~~~~~~~~p-~~~---~d~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 145 (651) T protein:vir:80 70 DVNADWRHKITTGKAFEAIETIHAYLMSATFPNKNWFDVVP-AKP---GQDNLLVSRLIKRYVQDKLTEGKFRAAYANFL 145 (651) T ss_pred CCCCCCCccccChhHHHHHHHHHHHHHHhhcCCCceeEecc-CCc---hhHHHHHHHHHHHHHHHHhhccCcHHHHHHHH Confidence 111112223333333333322 2233333322233211 111 11122233445544 44678999998999 Q ss_pred HHHHhhCCEEEEEEEeC--------------------------------CeeEEEEEcCCeEEEEEEcCCceEEEEEEEE Q lcl|Aclame:pro 134 EPTFALGGLTVRPYVDN--------------------------------GEIEFSWALANAFYPLRSNSNGISEGVMKSV 181 (517) Q Consensus 134 ~~a~~~G~~~~k~~~d~--------------------------------g~~~i~~v~a~~~~P~~~~~~~~~~~a~~~~ 181 (517) .+|...|.+++|+|||. |.++|+.|+|..|++ .-+..++..+.++.+ T Consensus 146 ~d~l~~G~~i~kv~we~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~v~p~~~~~-dp~a~~~~d~~~v~~ 224 (651) T protein:vir:80 146 RQLLITGNSVLALPWRVETAEVKKKVQVRTPLFEDEPTFEVVSEEREVKSSPDFEVLDMFDCFY-DPNVTDPNRGAFIRK 224 (651) T ss_pred HhhcccCceEEEEeecceeeeeehheeccccccccccceeeeccceeeeceeEEEEecHHHeee-cCCCcCccccceeee Confidence 99999999999999962 457899999999986 333344445544433 Q ss_pred EEEEecC-----CcEEEEEE------EE-----Eeecc--------e-----eeccceEEEEEEEeecCCccccCccccc Q lcl|Aclame:pro 182 TTKVIGN-----KTVYYTLL------EF-----HEWEK--------T-----EEGESLYVITNELYKSDNEGEIGKRIPL 232 (517) Q Consensus 182 ~~~~~~~-----~~~~yt~l------E~-----h~~~~--------~-----~~~~~~y~I~n~ly~~~~~~~lG~~v~l 232 (517) ...+..+ ...+|..+ +. +.... . ........+++..+. +.. |.. + T Consensus 225 ~~~t~~~l~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~v~v~E~~~~~-d~e---~~~--~ 298 (651) T protein:vir:80 225 LTKTKADILNLLSEGYYYGVDPLDVVEHKCKDTSDTKQDMLSTFQGVTTSLWSPHQNVELLEYWGDI-HLE---NKT--Y 298 (651) T ss_pred eeeeHHHHHHHHhcccccchhhHHHHhhhccccccCCccccccccCCCccccccccceEEEEEEEEe-ecc---CCc--e Confidence 2211110 00011000 00 00000 0 000000011110000 000 000 0 Q ss_pred ccccCCCCcceEE--cCC---CcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHH-Hhccceeecc Q lcl|Aclame:pro 233 EELYEGMQEKTYI--QGL---SRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEI-KMGQRTVFVS 306 (517) Q Consensus 233 ~~~~~~l~~~~~~--~g~---~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~-~~~~~~i~v~ 306 (517) ..+.........+ ... ...||+.++ ....+++.||+|....+.+.++.+|....++.+.. ..+.+++.|+ T Consensus 299 ~~~~v~~~g~~il~~~~~~~~~~~Pf~~~~----~~~~~~~~yG~g~~~~~~~~q~~ln~l~~~~ld~~~~~~~~~~~v~ 374 (651) T protein:vir:80 299 HDVVVTIMGNEVLRFEQNPYWCGRPFVIGT----YIPTARQPYAMGALQPNLGMLHELNIITNQRLDNLELAIDQMYTLR 374 (651) T ss_pred EEEEEEEcCcEEecccccCCCCCCCeeeec----ceecCccccCCChHHHHhHHHHHHHHHHHHHHHHHHHHhCCcEEec Confidence 0000000000000 011 112455443 22245788999999999999999999999999887 5778887886 Q ss_pred hHHhccCCCCcccccCccCCcccceeeeecCCCCCCcceEEeccc-ChHHHHHHHHHHHHHHHHHhCCCccccccCC--C Q lcl|Aclame:pro 307 DVMLRTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHDI-RTEQYKEAINQALRTLEMELKLSVGTFSFDG--R 383 (517) Q Consensus 307 ~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~di-r~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~--~ 383 (517) .+.+.+..+- .+.+.- +++ ++ ....+..+++.- .....+..++.+...+....|++.-..|.+. . T Consensus 375 ~d~~~~~~~l-------~~~pg~-vi~-~~---~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~gv~~~~~g~~~~~~ 442 (651) T protein:vir:80 375 SDGLLQPEDV-------YTEPGK-VFL-VS---DHGDLQPLANQSSNFSITYQESSFLESTIDKNFGTGNYVGANAARSG 442 (651) T ss_pred CCccccHHHh-------hcCCCc-eEE-ec---CCCCceeeccCcccchhHHHHHHHHHHHHHHHhcCChHHhCCCccch Confidence 5543221110 011111 111 11 112344555432 2234456677777778888888876666543 3 Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhc-------cCCCC-------CCccceEEEeCCCc Q lcl|Aclame:pro 384 SMKTATEIVSENDLTYRTRNDHVYEVEQ-FIKGLVISVLELAKTYKL-------FGGEI-------PSAEHIGVDFDDGV 448 (517) Q Consensus 384 ~~~TAtei~a~~~~~~~t~~~~~~~~~~-al~~li~~il~~~~~~~~-------~~~~~-------~~~~~v~i~f~d~i 448 (517) +..|||+|.............+.+.|.. .+..|++.++.+...+.- .+... ....+++++++- + T Consensus 443 ~~~TAteI~~~~~~~~~~l~~v~~~l~~e~l~pl~~r~l~l~~~~~~~~~~~ri~~~~~~~~~~~~i~~~dl~~~~~i-v 521 (651) T protein:vir:80 443 ERVTAAEVAAVREAGGNRLSGIHKHIEETSLLVLLEKVMHLVQQFTDQPGMVRVAGDEAGAYEYYELDVEDLQKEVRL-V 521 (651) T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccceeecccccccccccccCccceeeeeee-e Confidence 5679999999988888888887788876 678888888877654321 00000 001123333321 1 Q ss_pred cCCH------HHHHHHHHHHHhcCCCCHHHHHHhhCCCCHH-HHHHHHHHHHHhccccCCCCCccc-cCCCCCCCCC Q lcl|Aclame:pro 449 FQDR------SALLRFYGQAKTFGFIPTVEAIQRIFKVPKK-TAEQWLEEIRKDQIELDPVTISQR-AQKRMFGDEE 517 (517) Q Consensus 449 ~~d~------~~~~~~~~~~~~~G~~S~~~~l~~~~~~~ee-ea~~el~~i~~E~~~~~~~~~~~~-~~~~~~G~ee 517 (517) .... ...++.+.++.+.+ .....+... .....++++-+...-.++...-.+ .+.....-+| T Consensus 522 ~~g~~~~~~r~~~~~~l~~~~q~~--------~~~p~~~~~~~~~~~~~~l~~~~g~~~~~~~l~~~~q~~~~~~~~ 590 (651) T protein:vir:80 522 PIGSDHVIERKQYIEDRLTFIQAV--------AQVPEMGQLVDYKRILVDLLQHWGFEEPEAYLKQQDQQAPANPQE 590 (651) T ss_pred eccHHHHHHHHHHHHHHHHHHHhh--------ccCCccchhhhHHHHHHHHHHHcCCCCcHHhcCCCccchhhhhhH Confidence 1221 12222222222211 111111000 011111111111111111000000 0000000011 No 81 >protein:vir:95014 Length: 491 # NCBI annotation: structural protein # Family: family:all:584 # MgeID: mge:1547 # MgeName: KS7 # Cross-refs: genbank:acc:YP_224035;genbank:gi:62327322;genbank:GeneID:5176842 Probab=99.43 E-value=2e-11 Score=79.28 Aligned_cols=439 Identities=12% Similarity=0.046 Sum_probs=214.1 Q ss_pred HHHHhhcccchhhhccccCc-CCHHHHHHHHHHHHH---hcCCCcc------cccc-cccCcc--cccc--ccccChHHH Q lcl|Aclame:pro 14 GGYALSGQTLKSINDHEKIN-IDPNELARIERNLRQ---YEGDYPQ------VEYI-NSQGKI--QERD--YMTLNLRKL 78 (517) Q Consensus 14 ~~~~~~~~~~~~~~~~~~i~-~~~~~~~~i~~~~~~---Y~g~~~~------~~~~-~~~~~~--~~~~--~~~ln~~~~ 78 (517) |...++ ...+|. ..+++.+....|..+ |.|..-+ +.+. ...++. +.+. ..-.|+.+. T Consensus 1 ~~~~~~--------~~~~V~~~hp~y~a~~~~W~~ird~~~G~~~~~~r~~yl~~~~~~~~e~~Y~~rl~rA~~~n~~~~ 72 (491) T protein:vir:95 1 MLTANG--------QGSGVKTKHREWLHYAPKWQKVRHALAGDLVGYLRNVGLNEPDKAYGEARQAEYEAGGIVYNFTRR 72 (491) T ss_pred CcccCC--------ccCCCCccCHHHHHHHHHHHHHHHHhcCcchhhcccCCCcCCCCCCCHHHHHHHHhcccCCChHHH Confidence 222211 122332 256777777788764 7774210 1110 011111 1111 123599999 Q ss_pred HHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHH-HhhhhHHHHHHHHHHHHHhhCCEEEEEEEeC--C---- Q lcl|Aclame:pro 79 SADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHV-FQHNKFIKNLSDYLEPTFALGGLTVRPYVDN--G---- 151 (517) Q Consensus 79 i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~-l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~--g---- 151 (517) +++.++.++|.++|++.+++. ++.+++.+ .+-+++...++.++..++..|.+++-+=+.. + T Consensus 73 tl~~l~G~vfrk~p~~~~p~~------------l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~~~T~A 140 (491) T protein:vir:95 73 TLSGMVGSVMRKEPEINIPKE------------LEYLLKNADGSGVGLIQHAQDTLMEIDSVGRGGLLVDAPETAAATAA 140 (491) T ss_pred HHHHHhchhhcCCceeeccHH------------HHHHHhccCCCCCCHHHHHHHHHHHHHHcCeEEEEEecCCCcccCHH Confidence 999999999999999865321 22222211 2235788888899999999998888765431 1 Q ss_pred -------eeEEEEEcCCeEEEEEE--cCC-ceEEEEEEEEEEEE-ecC------CcEEEEEEEEEeecceeeccceEEEE Q lcl|Aclame:pro 152 -------EIEFSWALANAFYPLRS--NSN-GISEGVMKSVTTKV-IGN------KTVYYTLLEFHEWEKTEEGESLYVIT 214 (517) Q Consensus 152 -------~~~i~~v~a~~~~P~~~--~~~-~~~~~a~~~~~~~~-~~~------~~~~yt~lE~h~~~~~~~~~~~y~I~ 214 (517) +|-|..++|.+++=-.+ .++ +.+.-+.+.++... +.. ....|+.|+.-+ +|.|++ T Consensus 141 de~~~~~rPy~~~~~~~~IinW~~~~v~g~~~L~~v~l~E~~~~~d~~~~f~~~~~~qyRvL~l~~-------~g~~~~- 212 (491) T protein:vir:95 141 EQNAGLLNPTIAFYTTENIVNWRLTRVGSVNRVTMVVLRETWEYHEPGNEFETKYGEQYRVLDIDT-------DGNYRQ- 212 (491) T ss_pred HHHHhcCCcEEEEechhhhcCceeeeeCCceeeeEEEEEEeEEeecCCCCcccceEEEEEEEeecC-------CCceEE- Confidence 47899999999874211 122 12333333333222 211 234566665432 244554 Q ss_pred EEEeecCCccccCccccc-ccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHH Q lcl|Aclame:pro 215 NELYKSDNEGEIGKRIPL-EELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFW 293 (517) Q Consensus 215 n~ly~~~~~~~lG~~v~l-~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~ 293 (517) ++|+..... ..... .++. +..-.+.++..||+++-... |.... |.+-|-++-. ||..+-+.. T Consensus 213 -~v~r~~~~g---~~~~~~~~~~----~~~g~~~l~~IPfv~~~~~~-~~~~~----~~pPLl~LA~----lni~Hy~~s 275 (491) T protein:vir:95 213 -RLFRFDAEG---GAQEEVVEIY----PDLGESLRGVIPFTFIGATN-NDATI----DDAPLLPLAE----LNIGHYRNS 275 (491) T ss_pred -EEEEEcCCC---cceeeeeeee----ecCCCcccCeeEEEEEecCC-CCCCC----CcCchHHHHH----HHHHHhhhh Confidence 456532111 11110 0111 11112456777788774321 11111 2222322222 222222222 Q ss_pred ----HHHH-hccceeecch-HHhccCCCCcccccCccCCcccceeeeecCCCCCCcceEEecccChHHHHHHHHHHHHHH Q lcl|Aclame:pro 294 ----WEIK-MGQRTVFVSD-VMLRTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTL 367 (517) Q Consensus 294 ----~e~~-~~~~~i~v~~-~~l~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i 367 (517) +.+. .+.|..++.. +-+.......+......+.... .+..+. +.....+++....-. .+.|+.+-.++ T Consensus 276 sd~~~~l~~~~~P~l~~~G~d~~~~~~~~~~~~~~i~~g~~~----~~~lP~-~~~~~~ie~~~~~~~-~~~l~~~e~qm 349 (491) T protein:vir:95 276 ADNEESSFVVGQPTLFIYPGDNLTPQSFKEANPNGIKFGSRC----GHNLGY-GGSAQLIQAGENNLA-RQNMLDKEQQA 349 (491) T ss_pred hHHHHHHHHcccceeeeecCcccCcchhhccCcceeEecCcC----CcCCCC-CCccceeecCcchHH-HHHHHHHHHHH Confidence 2232 4445555411 0000000000000000111110 111222 223445555543322 33333332221 Q ss_pred HHHhCCCccccccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcc--ceEEEeC Q lcl|Aclame:pro 368 EMELKLSVGTFSFDGRSMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAE--HIGVDFD 445 (517) Q Consensus 368 ~~~~g~s~~~~~~~~~~~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~--~v~i~f~ 445 (517) .+.| ...+. .++..|||+.....+...+.+..+...++.++.++++.++.+.. ....... .++.+|. T Consensus 350 -~~~G--a~l~~--~~~~~Ta~~~~~~~~~~~S~L~~~a~~~e~al~~~l~~~a~w~G------~~~~~~v~i~~n~dF~ 418 (491) T protein:vir:95 350 -IQIG--AQLIT--PSQQITAESARIQRGADTSVMATIARNVSQAYTDALRWVAMMLG------KPEDSEVEFQLNMDFF 418 (491) T ss_pred -HHHH--HHhcc--CCcchhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcC------CCCCCceEEEeecccc Confidence 1122 22222 33568999999999888999999999999999999888776632 1112233 3455676 Q ss_pred CCccCCHHHHHHHHHHHHhcCCCCHHHHHHhhC--CCCHHHHHHHHHHHHHhccc--cCCCCCccccCCCCCCCC Q lcl|Aclame:pro 446 DGVFQDRSALLRFYGQAKTFGFIPTVEAIQRIF--KVPKKTAEQWLEEIRKDQIE--LDPVTISQRAQKRMFGDE 516 (517) Q Consensus 446 d~i~~d~~~~~~~~~~~~~~G~~S~~~~l~~~~--~~~eeea~~el~~i~~E~~~--~~~~~~~~~~~~~~~G~e 516 (517) .. ..| ...++.+.++..+|.||.++++..+- ++.+.+.++++.+|++|... +....-++-++.-..-.| T Consensus 419 ~~-~~~-~~~~~all~~~~~G~is~~t~~~~L~~~~vl~~~~e~~~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (491) T protein:vir:95 419 LQ-PMT-AQDRAAWMADINAGLLPATAYYAALRKAGVTDWTDEDILNAIEDAPLPSGAVTQVAGEIPQAAQQQQE 491 (491) T ss_pred cc-cCC-HHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccHHHHHHHHHhcCCCCCccccccccchhhhhhccC Confidence 53 334 34688889999999999999876433 66555667788888766521 111111222222222222 No 82 >protein:vir:78393 Length: 489 # NCBI annotation: putative structural protein # Family: family:all:584 # MgeID: mge:1851 # MgeName: SETP3 # Cross-refs: genbank:acc:YP_001110831;genbank:gi:134288592;genbank:GeneID:5179656 Probab=99.42 E-value=2.2e-11 Score=79.06 Aligned_cols=438 Identities=11% Similarity=0.044 Sum_probs=208.5 Q ss_pred HHHHhhcccchhhhccccCc-CCHHHHHHHHHHHHH---hcCCCcc------ccccc-ccCcc--cccc--ccccChHHH Q lcl|Aclame:pro 14 GGYALSGQTLKSINDHEKIN-IDPNELARIERNLRQ---YEGDYPQ------VEYIN-SQGKI--QERD--YMTLNLRKL 78 (517) Q Consensus 14 ~~~~~~~~~~~~~~~~~~i~-~~~~~~~~i~~~~~~---Y~g~~~~------~~~~~-~~~~~--~~~~--~~~ln~~~~ 78 (517) |...+ ....+|. ..+++.+....|..+ |.|..-. +.+.. ..+.. +.+. ..-.|+.+. T Consensus 1 ~~~~~--------~~~~~V~~~hp~y~a~~~~W~~ird~~~G~~~~~~r~~yl~~~~~~~~e~~Y~~rl~rA~~~n~~~~ 72 (489) T protein:vir:78 1 MLTEN--------GQGSGVKTKHREWLHYAPKWQKVRHALAGELVSYLRNVGLNEPDKAYGEARQAEYEAGGIVYNFTRR 72 (489) T ss_pred CccCC--------CccCCCCccCHHHHHHHHHHHHHHHHhcCcccccccCCCCCCCCCCCChHHHHHHHhccccCChHHH Confidence 22211 1122332 256777777788764 7774210 11100 01111 1111 112599999 Q ss_pred HHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHH-HhhhhHHHHHHHHHHHHHhhCCEEEEEEEeC-C----- Q lcl|Aclame:pro 79 SADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHV-FQHNKFIKNLSDYLEPTFALGGLTVRPYVDN-G----- 151 (517) Q Consensus 79 i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~-l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~-g----- 151 (517) +++.++.++|.++|++.+++. ++.+++.+ .+-+++...++.++..++..|.+++-+=+.. + T Consensus 73 tl~~l~G~vfrk~p~~~~p~~------------l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~~~T~a 140 (489) T protein:vir:78 73 TLSGMVGSVMRKEPEINIPKE------------LEYLLKNADGSGVGLIQHAQDTLMEIDSVGRGGLLVDAPETGAATAA 140 (489) T ss_pred HHHHHhchhhcCCcceeccHH------------HHHHHhccCCCCCCHHHHHHHHHHHHHhcCeEEEEEeeCCCCCcCHH Confidence 999999999999998865321 22222211 2235788888999999999998888765531 2 Q ss_pred -------eeEEEEEcCCeEEEEEE--cCCc-eEEEEEEEEEE-EEecCC------cEEEEEEEEEeecceeeccceEEEE Q lcl|Aclame:pro 152 -------EIEFSWALANAFYPLRS--NSNG-ISEGVMKSVTT-KVIGNK------TVYYTLLEFHEWEKTEEGESLYVIT 214 (517) Q Consensus 152 -------~~~i~~v~a~~~~P~~~--~~~~-~~~~a~~~~~~-~~~~~~------~~~yt~lE~h~~~~~~~~~~~y~I~ 214 (517) +|-|..++|.+++=-.+ .+|+ .+.-+.+.++. ..+..+ ...|+.|+.- .+|.|++ T Consensus 141 de~~~~~rPy~~~~~~~~IinW~~~~v~G~~~Lt~v~lrE~~~~~d~~~~f~~~~~~q~RvL~~~-------~~g~~~~- 212 (489) T protein:vir:78 141 EQNAGLLNPTIAFYTTENIVNWRLTRVGSVNRVTMVVLRETWEYNEPGNEFETKYGEQYRVLDID-------SDGNYRQ- 212 (489) T ss_pred HHHHhcCCcEEEEechhhhcCceeeeeCCccceeEEEEEEeEEeecCCCCccceeEEEEEEEecC-------CCcceEE- Confidence 57899999999874211 1222 23333333322 222111 1234444421 1344443 Q ss_pred EEEeecCCccc-cCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHH- Q lcl|Aclame:pro 215 NELYKSDNEGE-IGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQF- 292 (517) Q Consensus 215 n~ly~~~~~~~-lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~- 292 (517) ++|+...... .+..+ ++.. ..--+.++..||+++-... |.... |.+-|-++-.+ |..+-+. T Consensus 213 -~~~r~~~~g~~~~~~~---~~~~----~~g~~~l~~IPfv~~~~~~-~~~~~----~~pPLl~LA~l----ni~Hy~~s 275 (489) T protein:vir:78 213 -RLFRFDAEGGAQEDVV---EIYP----DLGESLRGVIPFTFIGATN-NDATI----DDAPLLPLAEL----NIGHYRNS 275 (489) T ss_pred -EEEEeecCCcccceee---EEec----cCCCCccCeeeEEEEecCC-CCCCC----CcCchHHHHHH----HHHHhhhh Confidence 4565332211 11111 1111 1112456777888775321 21111 22223222222 2222222 Q ss_pred ---HHHH-Hhccceeecch-HHhccCCCCcccccCccCCcccceeeeecCCCCCCcceEEecccChHHHHHHHHHHHHHH Q lcl|Aclame:pro 293 ---WWEI-KMGQRTVFVSD-VMLRTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTL 367 (517) Q Consensus 293 ---~~e~-~~~~~~i~v~~-~~l~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i 367 (517) -+.+ ..+.|..++.. +-......+.+......+.... .+..+. +.....+++....-. .+.++.+-+++ T Consensus 276 sd~~~~l~~~~~P~l~i~G~d~~~~~~~~~~~~~~i~~g~~~----~~~lp~-~~~~~~ie~~~~~~~-r~~l~~le~qm 349 (489) T protein:vir:78 276 ADNEESSFVVGQPTLFIYPGENLTPQAFKEANPNGIKFGSRR----GHNLGY-GGSAQLIQAGENNLA-RQNMLDKEQQA 349 (489) T ss_pred hHHHHHHHHcccceeeeecCccCCcccccccCccceeeCCcc----cccCCC-CCCcceeccCcchHH-HHHHHHHHHHH Confidence 2223 24455555421 0000000000000000111110 111222 223345555543322 33343333332 Q ss_pred HHHhCCCccccccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcc--ceEEEeC Q lcl|Aclame:pro 368 EMELKLSVGTFSFDGRSMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAE--HIGVDFD 445 (517) Q Consensus 368 ~~~~g~s~~~~~~~~~~~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~--~v~i~f~ 445 (517) . +.| ...+. .++..|||+.....+...+.+..+...++.|+.++++.++.+.. ....... .++.+|. T Consensus 350 ~-~lG--a~l~~--~~~~~Ta~~~~~~~~~~~S~L~~~a~~~e~al~~~l~~~a~w~G------~~~~~~~~i~~n~dF~ 418 (489) T protein:vir:78 350 I-QIG--AQLIT--PTQQITAQSARIQRGADTSVMATIARNVSQAYTDALRWVAVMLG------KPEDTEVEFRLNMDFF 418 (489) T ss_pred H-HHh--hhhcc--CCcchhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcC------CCCCCceEEEeecccC Confidence 1 222 23332 34568999999888888899999999999999999988877632 1112223 3455676 Q ss_pred CCccCCHHHHHHHHHHHHhcCCCCHHHHHHhhC--CCCHHHHHHHHHHHHHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 446 DGVFQDRSALLRFYGQAKTFGFIPTVEAIQRIF--KVPKKTAEQWLEEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 446 d~i~~d~~~~~~~~~~~~~~G~~S~~~~l~~~~--~~~eeea~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) .. ..| ...++.+.++.++|.||.++++..+- |+-+.+.+++..||.++....-....+..|++. -..| T Consensus 419 ~~-~~d-~~~~~al~~~~~~G~is~~t~~~~L~~~gv~d~~~e~~~~ei~~~~~~~~~~~~g~~~~~~--q~~~ 488 (489) T protein:vir:78 419 LE-PMT-AQDRAAWMADINAGLLPATAYYAALRKAGVTDWTDADIKDAVADQPLPVATEVQGEIPQSA--QQQE 488 (489) T ss_pred cc-cCC-HHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccHHHHHHHHhhcCCCcccCCcccCCCCc--cccc Confidence 53 334 34677888999999999998876432 443333344445555543221111112222222 2223 No 83 >protein:vir:79538 Length: 502 # NCBI annotation: putative portal protein # Family: family:all:47 # MgeID: mge:1871 # MgeName: cdtI # Cross-refs: genbank:acc:YP_001272517;genbank:gi:148609386;genbank:GeneID:5204374 Probab=99.42 E-value=2.4e-11 Score=78.84 Aligned_cols=435 Identities=13% Similarity=0.013 Sum_probs=204.0 Q ss_pred CchHHHHHHHHH------HHHHHhhcccchhhhccc-----cCcCCHH------HHHHHHHHHHHhcCCCcccccccccC Q lcl|Aclame:pro 1 MKVIQRIKNFFK------RGGYALSGQTLKSINDHE-----KINIDPN------ELARIERNLRQYEGDYPQVEYINSQG 63 (517) Q Consensus 1 m~~~~~ik~~~~------~~~~~~~~~~~~~~~~~~-----~i~~~~~------~~~~i~~~~~~Y~g~~~~~~~~~~~~ 63 (517) |+||+++-.+|- +..+...+.......... ...-|++ ...-..+-+.+|+ T Consensus 1 mn~~dr~i~~~sP~~~~~R~~ar~~~~~y~aa~~~r~~~~~~~~~s~~~~~~~~~~~lr~RaRdl~r------------- 67 (502) T protein:vir:79 1 MAILDDVIGVFSPGWKAARLRSRAVIQAYEAVKTTRTHKARRENRTADQLSQYGAVSLREQARYLDN------------- 67 (502) T ss_pred CchHhhHHhhcChHHHHHHHhhHHHHhhccccCcccccCCCCCCCChHHHHHHHHHHHHHHHHHHHh------------- Confidence 999999988873 111211111100000000 0000000 0000001111111 Q ss_pred ccccccccccChHHHHHHHHhhhhcCCc-ceeEecCcccccccccchhHHHHHHHHHHh----------hhhHHHHHHHH Q lcl|Aclame:pro 64 KIQERDYMTLNLRKLSADVLSGLVFNEQ-CEVYVSDAKDEEKKDNSFKTAHEFIQHVFQ----------HNKFIKNLSDY 132 (517) Q Consensus 64 ~~~~~~~~~ln~~~~i~~~~A~ll~~e~-~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~----------~n~f~~~~~~~ 132 (517) ..++++.+.+.+.+.+++.. ..+... ....+....+..++.|...+. ..+|.....-+ T Consensus 68 --------Nn~~a~~av~~~~~nvVG~ggi~~~~~---~~~~~~~~~~~~~~~ie~~w~~Wa~~~D~~g~~~f~~~q~l~ 136 (502) T protein:vir:79 68 --------NHDLVIGVFDKLEERVVGKNGIIVEPH---PVLRNGAIARDLAAEIRTRWSEWSVSPEVTGQFTRPMLERLM 136 (502) T ss_pred --------cChHHHHHHHHHHHhhccCCceeeeec---cCCCChhHHHHHHHHHHHHHHHhhcCcCccccCCHHHHHHHH Confidence 23677888899999999852 222110 000011112233444444433 23577777778 Q ss_pred HHHHHhhCCEEEEEEEeCC---------eeEEEEEcCCeEEEEEEcCC-ceEEEEEEEEEEEEecCCcEEEEEEEEEeec Q lcl|Aclame:pro 133 LEPTFALGGLTVRPYVDNG---------EIEFSWALANAFYPLRSNSN-GISEGVMKSVTTKVIGNKTVYYTLLEFHEWE 202 (517) Q Consensus 133 ~~~a~~~G~~~~k~~~d~g---------~~~i~~v~a~~~~P~~~~~~-~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~ 202 (517) +...+..|.+++++.++.. .++|..++|+.+ |...+.+ .+..+|- .+..+. T Consensus 137 ~r~~~~dGE~f~~~~~~~~~~~~~g~~~~l~lq~iepd~l-~~~~~~~~~i~~GVe------~d~~Gr------------ 197 (502) T protein:vir:79 137 LRTWLRDGEVFAQMVSGRINSLTPSAGVHFWLEALEPDFI-PMTSDESNRLNQGVF------VDDWGR------------ 197 (502) T ss_pred HHHHHhCCceEEEEeecccCccCCCcccceEEEEecchhc-CCCCCCCCeeEeeeE------ECCCCc------------ Confidence 8888999999999888642 258999999986 4333332 3333331 111111 Q ss_pred ceeeccceEEEEEEEeecCCccccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHH Q lcl|Aclame:pro 203 KTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTL 282 (517) Q Consensus 203 ~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~li 282 (517) .+-|.+++..-.+ +.... +.. ++..-++|+. ....++...|+|.|+.++..+ T Consensus 198 ---------~~aY~i~~~hPgd--~~~~~----~~r---------vpA~~vlH~f----~~~r~gQ~RGis~lapvl~~l 249 (502) T protein:vir:79 198 ---------PEKYLVYKSRPVS--GRQME----TKE---------VDAERMLHLK----FVRRLHQMRGTSLLSGVLIRL 249 (502) T ss_pred ---------eEEEEEeecCCCC--Ccccc----eeE---------echhheEEee----cccCCccccCCchHHHHHHHH Confidence 0111122211111 00000 000 1111233332 223456778999999999999 Q ss_pred HHHHHHHHHHHHHH-HhccceeecchHHhccCCCCccccc-CccCCcccce-ee-e--ecCCCCCCcceEEecccChHHH Q lcl|Aclame:pro 283 KKINDTYDQFWWEI-KMGQRTVFVSDVMLRTVPDESGMPP-PQVFDPDVNV-YK-S--IRMGTDEEFVKDVTHDIRTEQY 356 (517) Q Consensus 283 d~lD~~~s~~~~e~-~~~~~~i~v~~~~l~~~~~~~~~~~-~~~fd~~~~~-y~-~--~~~~~~~~~v~~~~~dir~e~~ 356 (517) ..||.-.+.-..-- -.+--..|| +...+...... .......... +. + +..=..+..++.++|.-+...+ T Consensus 250 ~~l~~~~dael~~a~i~A~~~~fi-----~~~~~~~~~~~~~~~~~~~~~~~l~pG~i~~~L~pGe~i~~~~p~~p~~~~ 324 (502) T protein:vir:79 250 SALKEYEDSELTAARIAAALGMYI-----RKGDGQSYEPDGNGSKENERELTIQPGIIYDDLKPGEEIGMVKSDRPNPNL 324 (502) T ss_pred HHHhHHHHHHHHHHHHhhhheeee-----ecCCCcccccccCCCCCccccccccCCccccccCCCceeeeeCCCCCCCCH Confidence 99985544332222 223333343 21111110000 0000000011 11 1 1111234568888888777788 Q ss_pred HHHHHHHHHHHHHHhCCCccccccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhccCCCCC Q lcl|Aclame:pro 357 KEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVSENDLTYRTRNDHVYEVEQFIKG-LVISVLELAKTYKLFGGEIP 435 (517) Q Consensus 357 ~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a~~~~~~~t~~~~~~~~~~al~~-li~~il~~~~~~~~~~~~~~ 435 (517) ..-+..+++.|....|+++..++-|-++ +=.++++.-...-..+...|..+...+-+ +.+..+..+-. .+.... T Consensus 325 ~~f~~~~lr~iaaglGi~ye~lt~D~s~--nySs~R~~~~e~~r~~~~~q~~~~~~~~~pi~~~~l~~a~l---~G~i~~ 399 (502) T protein:vir:79 325 ETFRNGQLRAVAAGSRLSFSSTARNYNG--TYSAQRQELVESTDGYLILQDWFIGAVTRPMYRAWLKQAVA---SGVIRL 399 (502) T ss_pred HHHHHHHHHHHHhhcCCCHHHHhccccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCCCCC Confidence 8888888999999999999999877543 22333333333333333334434433333 33322332221 111111 Q ss_pred -----CccceEEEe--CCCccCCHHHHHHHHHHHHhcCCCCHHHHHHhhCCCCHHHHHHHH----HHHHHhccc--cCCC Q lcl|Aclame:pro 436 -----SAEHIGVDF--DDGVFQDRSALLRFYGQAKTFGFIPTVEAIQRIFKVPKKTAEQWL----EEIRKDQIE--LDPV 502 (517) Q Consensus 436 -----~~~~v~i~f--~d~i~~d~~~~~~~~~~~~~~G~~S~~~~l~~~~~~~eeea~~el----~~i~~E~~~--~~~~ 502 (517) ...-..+.| .--..+|+.++++.....+.+|+.|.++.+.+. |.+-+++.+++ +++++-... .+|. T Consensus 400 p~~~~~~~~~~~~W~~p~~~~iDP~Ke~~a~~~~i~~Gl~t~~~~~a~~-G~D~~~v~~q~a~e~~~~~~~Gl~~~~~~~ 478 (502) T protein:vir:79 400 PRDLDRSSLYTAVYSGPVMPWIDPVKEAEAWKIQIRGGAATESDWVRAG-GRNPDDVKRRRKAEIDENRKLDLVFDTDPA 478 (502) T ss_pred CCCCCchhhcceeeecCCccccChHHHHHHHHHHHHcCCCCHHHHHHHc-CCCHHHHHHHHHHHHHHHHHcCCCCCCCCC Confidence 111234555 444557999999999999999999999988766 76655443333 333332211 1110 Q ss_pred ---------CCccccCCCCCCCCC Q lcl|Aclame:pro 503 ---------TISQRAQKRMFGDEE 517 (517) Q Consensus 503 ---------~~~~~~~~~~~G~ee 517 (517) ...+.+.++....|| T Consensus 479 ~~~~~~~~~~~~~e~~~~~~~~e~ 502 (502) T protein:vir:79 479 SDKGGSSAATKRQEPQHTDDQSEE 502 (502) T ss_pred CCCCCCCCCCCCCCCCCCCCCCCC Confidence 011112222111122 No 84 >protein:vir:96783 Length: 488 # NCBI annotation: putative structural protein # Family: family:all:584 # MgeID: mge:1629 # MgeName: phiHSIC # Cross-refs: genbank:acc:YP_224240;genbank:gi:62362375;genbank:GeneID:3345722 Probab=99.37 E-value=5.6e-11 Score=76.78 Aligned_cols=429 Identities=11% Similarity=0.005 Sum_probs=194.6 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCc----c------cc-cccccCcc---- Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYP----Q------VE-YINSQGKI---- 65 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~----~------~~-~~~~~~~~---- 65 (517) |. ++....-...+... + +.+-+ .-...+..-..-|-=+++ . .. |+...... T Consensus 14 m~-V~~~hp~y~a~~~~----W-~~~~d--------~g~~~~k~~g~~YLPk~~~~~~~~~~d~~y~~~~~~~~~~y~~~ 79 (488) T protein:vir:96 14 ML-TPIYHPDYLVNAPQ----W-LRNLD--------CVMDNIKRKKQTYLPNLGAIPPEAKTDPKVTALAAKIEKDWEDL 79 (488) T ss_pred ec-ccccCHHHHHHhhh----h-hHhhh--------hhhHHHHHhhhhcCCCCCCccccccCcchhhhhhccchhhhHhh Confidence 33 11111111111110 0 00000 001112211111111100 0 00 00000000 Q ss_pred ccccccccChHHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHH-HhhhhHHHHHHHHHHHHHhhCCEEE Q lcl|Aclame:pro 66 QERDYMTLNLRKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHV-FQHNKFIKNLSDYLEPTFALGGLTV 144 (517) Q Consensus 66 ~~~~~~~ln~~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~-l~~n~f~~~~~~~~~~a~~~G~~~~ 144 (517) ..++..-.|+.+.+++.++.++|.++|++..++++ ..+.+++.+ .+-+++...++.++..++..|.+++ T Consensus 80 ~~~rA~~~n~~~~tl~~l~G~vfrk~p~~~~~~~~----------~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~i 149 (488) T protein:vir:96 80 TWRLANYVNIVNPTMNAITGAVMRREPEFDTMDNP----------VLIGLRDNIDGKGNGIDQECKQALNALQWGSRCGW 149 (488) T ss_pred hhhccccCchhHHHHHHhcchhhccCceeccCCcH----------HHHHHHhccCCCCCCHHHHHHHHHHHHHhcCeEEE Confidence 00011235999999999999999999998765432 122222211 2235788888899999999998888 Q ss_pred EEEEeC------------CeeEEEEEcCCeEEEEEE--cCCc-eEEEEEEEEEEEEecCCcEEE--EEEEEEeecceeec Q lcl|Aclame:pro 145 RPYVDN------------GEIEFSWALANAFYPLRS--NSNG-ISEGVMKSVTTKVIGNKTVYY--TLLEFHEWEKTEEG 207 (517) Q Consensus 145 k~~~d~------------g~~~i~~v~a~~~~P~~~--~~~~-~~~~a~~~~~~~~~~~~~~~y--t~lE~h~~~~~~~~ 207 (517) -+=+.. .+|-+..++|.+++=-.+ .+|+ .+.-+.+.++. .+.++..++ ++...|.+. T Consensus 150 lVD~P~~~~T~ade~~~~~rPy~~~~~a~~IinW~~~~v~G~~~L~~v~lrE~~-~~~D~~~~~~~~~~~~~~l~----- 223 (488) T protein:vir:96 150 LVRSHPESATMADWNKGKKLPTAAFYDALHIIDWEVEYIDGEEKLTYLSLLEDY-QERDGGTYVSKQRLINHRLV----- 223 (488) T ss_pred EEecCCCcCCHHHHHHhcCCcEEEEechhhhcCcceeccCCceeeEEEEEEEEE-EeccCCCcccceEEEEEEEE----- Confidence 764432 147899999999875211 1222 22223233322 222211111 111222221 Q ss_pred cceEEEEEEEeecCCccccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHH Q lcl|Aclame:pro 208 ESLYVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKIND 287 (517) Q Consensus 208 ~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~ 287 (517) +|.|++. .|..+ ...+..+|. ..-.+.++..||+++... .|.-. .|.+-|-++-. +|. T Consensus 224 ~g~~~v~--~~~~~--~~~~e~~~~---------~~g~~~l~~IP~v~~~~~-~~~~~----~~~pPLldLA~----lnl 281 (488) T protein:vir:96 224 DGLCEFQ--EVTDD--EYSDEWTPV---------LINSKQSDTIPFFLASSQ-SNEWC----IDSTPLTSLAE----ISL 281 (488) T ss_pred CcEEEEE--EEecC--CcccceEee---------cCCCcccCeeEEEEEecC-CCCCC----CCCCchHHHHH----HHH Confidence 3555543 23221 111111111 011235666778877432 12111 12232322222 232 Q ss_pred HHHHHHHHH----HhccceeecchHHhccCC-CCcccccCccCCcccceeeeecCC--CCCCcceEEecccChHHHHHHH Q lcl|Aclame:pro 288 TYDQFWWEI----KMGQRTVFVSDVMLRTVP-DESGMPPPQVFDPDVNVYKSIRMG--TDEEFVKDVTHDIRTEQYKEAI 360 (517) Q Consensus 288 ~~s~~~~e~----~~~~~~i~v~~~~l~~~~-~~~~~~~~~~fd~~~~~y~~~~~~--~~~~~v~~~~~dir~e~~~~~l 360 (517) .+-+..-++ ..+...++| +...+ ..+..... ....+..+.... ..++.+..+++.+..- ..+.+ T Consensus 282 ~Hy~~ssd~~~il~~~~~p~lv----~~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~g~~~~~e~~~~~l-~~~~l 352 (488) T protein:vir:96 282 SIYVMNAYSNKAMILANEAKWM----VDMGDMNKTMASEM----NPLGFTLAGRMPYYVKNGDVKVIQAQFSPE-TENKV 352 (488) T ss_pred HHHhhhhHHHHHHHhcCCceee----eccCCCCccccccc----ccceeeecccccccccCCceeecCCchhHH-HHHHH Confidence 222222222 333333333 10000 00000000 000111111111 1222355566655432 23445 Q ss_pred HHHHHHHHHHhCCCccccccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccce Q lcl|Aclame:pro 361 NQALRTLEMELKLSVGTFSFDGRSMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHI 440 (517) Q Consensus 361 ~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v 440 (517) +.+.+++ .+.| ...+. .++..|||+.....+...+.+..+...++.|+.++++.+.++..... ++..+....+ T Consensus 353 ~~l~~qm-~~~G--a~l~~--~~~~~Ta~~~~~~~~~~~S~L~~~a~~le~al~~~l~~~A~w~g~~~--~~~~~~~~~~ 425 (488) T protein:vir:96 353 EKLFEQA-VKVG--ASLFT--QQSNETATGAAIRSGSSTASMATLGNNVEDTVRNMLRFIMRYFEGTN--LYVNPDELVF 425 (488) T ss_pred HHHHHHH-HHHh--Hhhcc--CCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--CCcCccceEE Confidence 5544443 2222 23332 33567999999988888999999999999999999998887643211 1112222333 Q ss_pred EE--EeCCCccCCHHHHHHHHHHHHhcCCCCHHHHHHhhC--CCC--HHHHHHHHHHHHHhcccc Q lcl|Aclame:pro 441 GV--DFDDGVFQDRSALLRFYGQAKTFGFIPTVEAIQRIF--KVP--KKTAEQWLEEIRKDQIEL 499 (517) Q Consensus 441 ~i--~f~d~i~~d~~~~~~~~~~~~~~G~~S~~~~l~~~~--~~~--eeea~~el~~i~~E~~~~ 499 (517) ++ +|... ..| ...++.++++..+|.||.++++..+- |+- +-+.++|..||.++.... T Consensus 426 ~in~dF~~~-~ld-~~~~~al~~~~~~G~Is~~t~~~~L~~~gvl~~d~~~e~~~~~ie~~g~~~ 488 (488) T protein:vir:96 426 KLNRDYFDV-EVN-PQMLQVAYAAMMEGNLPQVSWFELLKRARVVRGDMSKEEFDEHIAELGFGM 488 (488) T ss_pred EeccCCCCc-cCC-HHHHHHHHHHHhcCCCCHHHHHHHHHhCCcCCccCCHHHHHHHHhhcCCCC Confidence 33 34442 334 44788889999999999999876433 442 223456777776544322 No 85 >protein:vir:108295 Length: 711 # NCBI annotation: hypothetical protein # Family: family:all:487 # MgeID: mge:2007 # MgeName: BA3 # Cross-refs: genbank:acc:YP_001552284;genbank:gi:160700609;genbank:GeneID:5758811 Probab=99.36 E-value=2.2e-11 Score=79.03 Aligned_cols=474 Identities=10% Similarity=0.009 Sum_probs=226.4 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccChHHHHH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLRKLSA 80 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~~~i~ 80 (517) =.++.+++.+|+.. .....+......+..+||.|++..-.-+ ..-+-..+...+.|+-+.++ T Consensus 29 ~~~~~~~~~~~~~~-----------------~~~~~~~r~~a~~d~~fy~G~Qw~~~~~-~~l~~~g~p~~~~N~i~~~v 90 (711) T protein:vir:10 29 RALLATARERARDG-----------------ATYWKDNWEAAEDDLKFLGGEQWPSQVR-TERELEQRPCLVNNVLPTFV 90 (711) T ss_pred HHHHHHHHHHHHHH-----------------HhhhHHHHHHHHHHHHHhCCCCCCHHHH-HHHHhcCCCcEEEcchHHHH Confidence 22333333333210 0112333444556678999874321100 01111224456789888888 Q ss_pred HHHhhhhcCCcceeEecCcc--------------------cccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhC Q lcl|Aclame:pro 81 DVLSGLVFNEQCEVYVSDAK--------------------DEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALG 140 (517) Q Consensus 81 ~~~A~ll~~e~~~i~~~~~~--------------------~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G 140 (517) +.....--.-.+.+.+.-.. .+..+....+.++..+.-+.+.++.......+..+++..| T Consensus 91 ~~v~g~~~~nr~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Ae~l~~~~~~~~~~~~~~~~~s~af~d~~~~G 170 (711) T protein:vir:10 91 DQVLGDQRQNRPAIKVSSTEVTRVPDAESGEDTTLKISNVAGKNDYELAEVFTGLIKNIEYNCDAETEYDIAFQGAVESG 170 (711) T ss_pred HHHhhhHhhCCcceEEecccccchhhhhhhhccccccccCCChhHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhhcC Confidence 88888877777888775321 1122334455666666777777888888999999999999 Q ss_pred CEEEEEEEe-------CCeeEEEEE-cCCeEEE--EEEcCCceEEEEEEEEEEEEe--------cCC------------- Q lcl|Aclame:pro 141 GLTVRPYVD-------NGEIEFSWA-LANAFYP--LRSNSNGISEGVMKSVTTKVI--------GNK------------- 189 (517) Q Consensus 141 ~~~~k~~~d-------~g~~~i~~v-~a~~~~P--~~~~~~~~~~~a~~~~~~~~~--------~~~------------- 189 (517) .||+++++| +|.++|..| +|..|++ ..... ....|=++++..... ++. T Consensus 171 ~G~~ev~~d~~~~d~~~~e~~i~~v~~p~~v~~Dp~a~~~-D~sDar~~~~~~~~~~~~~~~~yp~~a~~~~~~~~~~~~ 249 (711) T protein:vir:10 171 MGYLRVRSDYLADDSFEQDLIIEAIQNQFSVTIDPDAKKR-DRSDMNWCLIDDTMSKEKFKALYPDATAEPVYEDSVADY 249 (711) T ss_pred cceEEEEecccCCCCCCCCeEEeeecChhheeeCcccccc-ChhhhcceeeeecCCHHHHHHhCCchhhhhhhccccccc Confidence 999999875 267888777 5877663 11111 112222222221110 000 Q ss_pred -----cEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccc-c----ccC-CC------------------C Q lcl|Aclame:pro 190 -----TVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLE-E----LYE-GM------------------Q 240 (517) Q Consensus 190 -----~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~-~----~~~-~l------------------~ 240 (517) ....+..|+.+... ....++...+.. +...+-. . .++ +. . T Consensus 250 ~~~~~~~~vrv~E~~~r~~---------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~v~~~~~~ 318 (711) T protein:vir:10 250 DTWFTEKSVRVSEYFTREP---------VIREIALLSDGR--SFWLDALEDIVDELLEAGISIVRTRKVKTFKTYWRKIT 318 (711) T ss_pred CcccCcceeeEEEEEeeee---------eeeEEEeecCCc--eeccCcchhHHHHHHhcCchhhhhhhhceeeEEEEEEe Confidence 00011122211100 000111111100 0000000 0 000 00 0 Q ss_pred cceEEcC-----CCcceEEEecCCcccc-ccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHH-HhccceeecchHHhccC Q lcl|Aclame:pro 241 EKTYIQG-----LSRPLFNYLKPSGFNN-INPHSPLGLGITDNSVSTLKKINDTYDQFWWEI-KMGQRTVFVSDVMLRTV 313 (517) Q Consensus 241 ~~~~~~g-----~~~p~f~~~~~~~~N~-~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~-~~~~~~i~v~~~~l~~~ 313 (517) ....+.+ .++.||++|- ... ....+..+.+.+.++++.++.+|...|++.+.+ ..++.+++++.+.+... T Consensus 319 G~~~L~~~~p~~~~~~P~vp~~---g~r~~~d~~~~~~G~vr~~~d~Qr~~N~~~s~~~~~l~~~~~~~~~~~~gai~~~ 395 (711) T protein:vir:10 319 GANVLEGPVEIPSTTIPVIPVW---GKSLIIKKKEIFRSIIRHSKDAQRMANYWDSAATETVALAPKAPFIGSEGNVEGR 395 (711) T ss_pred cceeecCCCCCCCCcccEEEEe---eeeeccccccccchhhhhhhhhHHHHHHHHHHHHHHHHhcCCCceeecCcccCCh Confidence 0000111 1223333321 111 123444455679999999999999999999999 56788889888776531 Q ss_pred CCCcccccCccCCcccceeeeec-CCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHHH Q lcl|Aclame:pro 314 PDESGMPPPQVFDPDVNVYKSIR-MGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIV 392 (517) Q Consensus 314 ~~~~~~~~~~~fd~~~~~y~~~~-~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~ 392 (517) .+-- .... . ....+..++ +......++..++.--..+++..++.....|...+|++...+|..++ ..|+..|. T Consensus 396 ~~~~-~e~~--~--~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~i~~~tGi~~~~~G~~~n-~~Sg~ai~ 469 (711) T protein:vir:10 396 EDEW-EQAN--T--KNFSLLTYIPQYQGDPGPRRQPPAAVPAAELTLGQNSVEKIKSTMGMYDASLGAMGN-ETSGRAII 469 (711) T ss_pred HHHH-Hhcc--c--cCCCeeEecccccCcCCccccCCCCCCHHHHHHHHHHHHHHHHHhCCChHHcCCCcc-chHHHHHH Confidence 1100 0000 0 011122222 22233356655544345678888988888898999999999987653 45677777 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----ccCCCCC-----------------------------Cccc Q lcl|Aclame:pro 393 SENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYK----LFGGEIP-----------------------------SAEH 439 (517) Q Consensus 393 a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~----~~~~~~~-----------------------------~~~~ 439 (517) +...........+...+..+++.+.+.++.+...+- .+..... ..++ T Consensus 470 ~~q~qg~~~l~~~~dn~~~~~~~~g~~ll~li~~~~~~er~~rI~ged~~~~~v~ln~~~~~~~~G~~~~~nDi~~g~~D 549 (711) T protein:vir:10 470 ARQRQGDRGSFAFIDNLTKSIRRVGKILVEMIPHIYDTERVVRLKFPDETEDFVKLNEQIFDEESGEWVTIHDLNVQKYD 549 (711) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEecCCCCcceEEecccccccccccceeeeccceeeeE Confidence 777776666677777777788887777777655321 1100000 0122 Q ss_pred eEEEeCCCccCCHHHHHHHHHHHHhcCCCCHH-----HHHHhhCCCCHHHHHHHHHHHHHhccccCCCCCccccCC---- Q lcl|Aclame:pro 440 IGVDFDDGVFQDRSALLRFYGQAKTFGFIPTV-----EAIQRIFKVPKKTAEQWLEEIRKDQIELDPVTISQRAQK---- 510 (517) Q Consensus 440 v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~-----~~l~~~~~~~eeea~~el~~i~~E~~~~~~~~~~~~~~~---- 510 (517) |+|+=..+...-..+.++.++++. +.++.- ..+.++-++.. +++..++|+.-+.++.+....+.... T Consensus 550 v~i~~~p~~~s~r~~~~~~l~ql~--~~~p~~~~~~~~~il~~~d~p~--~~el~e~lr~~~~~~~~~~~~~~~~qq~~~ 625 (711) T protein:vir:10 550 VVVTTGPAFATQRIEAAEAMIQFA--QAVPSAAAVMADLIAQNMDWPG--ADVIAERLKKIVPPNVLSKDEREAIEEDMP 625 (711) T ss_pred EEEeeccCchhHHHHHHHHHHHHH--hhcchhhhHHHHHHHHhcCCCC--HHHHHHHHHhhcCcccCcchhhhHHHHHHH Confidence 333222222222233333344433 222221 11223333322 22333444433322222111100000 Q ss_pred --------------CCCCCC-----C Q lcl|Aclame:pro 511 --------------RMFGDE-----E 517 (517) Q Consensus 511 --------------~~~G~e-----e 517 (517) ...++. | T Consensus 626 e~qq~~~~~q~~~~~~q~~~~qa~ae 651 (711) T protein:vir:10 626 EQTEPTPEQQVEMAKSQADMAQAEAD 651 (711) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 000000 0 No 86 >protein:vir:80040 Length: 461 # NCBI annotation: gp3 # Family: family:all:297 # MgeID: mge:1876 # MgeName: B054 # Cross-refs: genbank:acc:YP_001468707;genbank:gi:157325287;genbank:GeneID:5601731 Probab=99.36 E-value=1e-11 Score=80.78 Aligned_cols=421 Identities=11% Similarity=0.038 Sum_probs=191.1 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHH-----------HHHHHHhcCCCcccccccccCcccccc Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARI-----------ERNLRQYEGDYPQVEYINSQGKIQERD 69 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i-----------~~~~~~Y~g~~~~~~~~~~~~~~~~~~ 69 (517) |+=+..-+. ..+..+ +.....-+ ..| .+-|.+..+.|. ....- T Consensus 1 ~~~~~~a~~--------------~~~~~~-----a~~~~~~~~~~g~~~~~d~~~~--~~~~~~~~~~~~-----~l~~l 54 (461) T protein:vir:80 1 MYSIDKAKQ--------------AKIDSK-----IVNRNDFMVGHGKANSRDKLTR--QTPGNGQKLDLK-----ACENL 54 (461) T ss_pred Cccchhhhh--------------hhhhhh-----hhhhhHHHhhcCCcchhhhhhc--cccCcccccCHH-----HHHHH Confidence 222222111 111100 00000000 000 000111111100 00011 Q ss_pred ccccChHHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe Q lcl|Aclame:pro 70 YMTLNLRKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD 149 (517) Q Consensus 70 ~~~ln~~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d 149 (517) ..+-.+++.||+..|+.++.+...|+..++ ...+.|...++.-++...+.+++..+..+|++++-+-+. T Consensus 55 Y~~~~l~r~iVd~~a~d~~r~g~~i~~~~~-----------~~~~~~~~~~~~l~~~~~l~~~~~~~rl~G~a~i~i~v~ 123 (461) T protein:vir:80 55 YASNSIAMNIVDIISEDMVRAGWSLKTDNK-----------EMKKNIESKWRKLKTKDRFQKLYADKRLYGDGFLSIGVV 123 (461) T ss_pred HHhCCccchhhccchHHhhcCCeeeecCCH-----------HHHHHHHHHHHHhhHHHHHHHHHHhhcccccEEEEEEee Confidence 224468899999999999998877765432 223344444555578999999999999999988887765 Q ss_pred CCeeEEEEEcCCeEEEEEEcCCceEEEEEEEEEEE-------EecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCC Q lcl|Aclame:pro 150 NGEIEFSWALANAFYPLRSNSNGISEGVMKSVTTK-------VIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDN 222 (517) Q Consensus 150 ~g~~~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~-------~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~ 222 (517) +++.+ .++..-||....-+...-+..+.... .+.-...|+ +- ..|+|... . T Consensus 124 d~~~~----~~~~~~pl~~~~~~~~~~l~~~~~~~i~~~~~~~dp~sp~fg-~P------------~~y~i~~~-----~ 181 (461) T protein:vir:80 124 SSNRE----QADLSTAIDPKTIKSIPYINTFNTQKVTQLYLNQDMFSEHFG-EV------------EFFEVNRV-----S 181 (461) T ss_pred cCCcc----ccCccCCcccccccceeEEEeccccccchhhhcccCcCcccc-cc------------eEEEEecc-----c Confidence 44331 22222333222211111000000000 000000000 00 11111110 0 Q ss_pred ccccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccce Q lcl|Aclame:pro 223 EGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRT 302 (517) Q Consensus 223 ~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~ 302 (517) . .+.. .... ..+. ....++. .| +++|.+ ...++..+|+|++..+.+.+++++.+.-....-+...+.. T Consensus 182 ~--~~~~-~~~~-~~~~-~~~~iH~-SR--ii~~~~----~~~~~~~~G~S~le~~~~~l~~~~~~~~~~~~l~~~~~~~ 249 (461) T protein:vir:80 182 Q--LGEE-ILSG-TTAS-TSEQIHR-SR--IIHEQG----LRFEGETKGRSIFESLYDIITVMDTSLWSVGQILYDFAFK 249 (461) T ss_pred c--cccc-cccc-ccCc-cceEEcc-cc--EEEecC----CCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCC Confidence 0 0000 0000 0000 0111221 12 223322 2222345699999999999999998888777666433333 Q ss_pred eecchHHhccCCCCcccccCccCC---cccceeeeecCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCcccc- Q lcl|Aclame:pro 303 VFVSDVMLRTVPDESGMPPPQVFD---PDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTF- 378 (517) Q Consensus 303 i~v~~~~l~~~~~~~~~~~~~~fd---~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~- 378 (517) ++-.+. +....+.........++ ....++. .+. +..+++++.++ ......++.+...|+..++++...| T Consensus 250 v~k~~~-l~~~~~~~~~~~~~~~~~~~~~~g~~~---~d~-~e~~e~~~~~l--sgl~~~l~~~~~~iaa~s~iP~t~L~ 322 (461) T protein:vir:80 250 VYKTDD-IDALNKDDKANLTAMLDFMFRTEALAI---IKG-DEQLTKESTNV--SGMKDLLDYGWDYLAGAVRMPKTVLK 322 (461) T ss_pred ceecch-HHhhhchHHHHHHHHHHHhcCCceEEE---EcC-CcceEEEecCc--CCHHHHHHHHHHHHhhhhcCCeeeee Confidence 332221 11111111111111111 1111111 122 22366666554 4556677788888999999987654 Q ss_pred ccCCCccchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHH Q lcl|Aclame:pro 379 SFDGRSMKTATEIVSENDLTYRTRNDHV-YEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLR 457 (517) Q Consensus 379 ~~~~~~~~TAtei~a~~~~~~~t~~~~~-~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~ 457 (517) |-..++.+|+. ...+-.+..+..+| ..++..|+.|+..|+.- ...+.....+..++++|.|++-...+..+.++ T Consensus 323 G~s~g~~asge---~D~~~yyd~i~~~qe~~l~p~le~l~~~i~~s--~~~~~~~~~p~~~~~~i~f~~L~~~s~kekAe 397 (461) T protein:vir:80 323 GQEAGTLTGAQ---YDVMNYYARVSSIQENRLRPQLEYLTRLLMWA--SDDCGPSIDPDSFEWAIEFNPLWNLDSKTDAE 397 (461) T ss_pred cccCCccccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcccccccCccccceEEEeCCCCCCCHHHHHH Confidence 43333343333 33344667777766 57899999999988752 12222233444578999999988888877765 Q ss_pred H-------HHHHHhcCCCCHHHHHHhh---CCCCHHH-------HHHHHHHHHHhccccCCCCCccccCCCCCC Q lcl|Aclame:pro 458 F-------YGQAKTFGFIPTVEAIQRI---FKVPKKT-------AEQWLEEIRKDQIELDPVTISQRAQKRMFG 514 (517) Q Consensus 458 ~-------~~~~~~~G~~S~~~~l~~~---~~~~eee-------a~~el~~i~~E~~~~~~~~~~~~~~~~~~G 514 (517) . +.+++.+|++|.+++...+ ++.++.. ..+++++...+..+ ++...| T Consensus 398 ~~~~~a~a~~~~~~~g~is~~e~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~e~~~g 461 (461) T protein:vir:80 398 VRKLTAEADQIYIVNGVLDPDEVKETRFGRFGLENSSKFSGDSAEIDKLAKLVYDAYA----------KKNADG 461 (461) T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcCCCCCccCCCCCchhhhhhhhcccccc----------ccCCCC Confidence 4 4556667777777654322 2222110 01112211111100 111111 No 87 >protein:vir:95542 Length: 548 # NCBI annotation: Putative portal protein # Family: family:all:47 # MgeID: mge:1574 # MgeName: F10 # Cross-refs: genbank:acc:YP_001293348;genbank:gi:148912769;genbank:GeneID:5228194 Probab=99.34 E-value=7.9e-11 Score=75.96 Aligned_cols=441 Identities=11% Similarity=0.015 Sum_probs=205.0 Q ss_pred CchHHHHHHHHH------HHHHHhhcccchhhh-ccc----cCcCCHHH------HHHHHHHHHHhcCCCcccccccccC Q lcl|Aclame:pro 1 MKVIQRIKNFFK------RGGYALSGQTLKSIN-DHE----KINIDPNE------LARIERNLRQYEGDYPQVEYINSQG 63 (517) Q Consensus 1 m~~~~~ik~~~~------~~~~~~~~~~~~~~~-~~~----~i~~~~~~------~~~i~~~~~~Y~g~~~~~~~~~~~~ 63 (517) |+||+++-.+|- ++.....+....-.. .+. .-..|+.. .....+-+.+++| T Consensus 1 Mn~iDr~i~~~sP~~a~~R~~ar~~~~~y~aa~~~r~~~~~~~~~s~~~~i~~~~~~lr~RaRdL~rN------------ 68 (548) T protein:vir:95 1 MNLIDRLLEPLAPELVARRLAAREAIQAYEAARPGRTHKAKRQPLGADTSLQKSAVSMREQCRKLDED------------ 68 (548) T ss_pred CchHHhHhhhcchHHHHHHHHhHHHhccccccCccccccccCCCCChHHHHHHHHHHHHHHHHHHHhc------------ Confidence 999999988872 211111111100000 000 00000000 0000111122222 Q ss_pred ccccccccccChHHHHHHHHhhhhcCC-cceeEec--CcccccccccchhHHHHHHHHHHhh------hhHHHHHHHHHH Q lcl|Aclame:pro 64 KIQERDYMTLNLRKLSADVLSGLVFNE-QCEVYVS--DAKDEEKKDNSFKTAHEFIQHVFQH------NKFIKNLSDYLE 134 (517) Q Consensus 64 ~~~~~~~~~ln~~~~i~~~~A~ll~~e-~~~i~~~--~~~~~~~~~~~~~~~~~~l~~~l~~------n~f~~~~~~~~~ 134 (517) .++++.+.+.+.+.+++. -..+.-. +.+ .+...+..+.....+.....+ .+|......++. T Consensus 69 ---------n~~a~~av~~~~~nvVG~~G~~i~p~~l~~d-~~~a~~l~~~ie~~w~~Wa~~~D~~g~~~f~~lq~l~~R 138 (548) T protein:vir:95 69 ---------HDLVTGLLDRLEERVVGGSGIGVEPLPLRLD-GSVHAELAMEIRSAWAEWSLSPETSGELTRPQVERLMCR 138 (548) T ss_pred ---------ChHHHHHHHHHHHhccCccccceeeeecCCC-HHHHHHHHHHHHHHHHHhhcCccccccCCHHHHHHHHHH Confidence 357788888888888884 2222211 110 011111122222333333322 248888888888 Q ss_pred HHHhhCCEEEEEEEeCC---------eeEEEEEcCCeEE-EEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecce Q lcl|Aclame:pro 135 PTFALGGLTVRPYVDNG---------EIEFSWALANAFY-PLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKT 204 (517) Q Consensus 135 ~a~~~G~~~~k~~~d~g---------~~~i~~v~a~~~~-P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~ 204 (517) ..+..|.++++..|+.. .++|..++|+.+- |...+.+.+..+|-+ ... +...-|.....| ++.. T Consensus 139 ~~~~dGE~f~~~~~~~~~~~~~g~~~~~~lqliepd~l~~~~~~~~~~i~~GIE~----D~~-Grp~aY~i~~~h-Pgd~ 212 (548) T protein:vir:95 139 TWLRDGEGLAQKLMGRVPNYTFATSVPFALELLEPDYLPFSYNNLSKGIVQGIER----DTW-RRKRAYHLLKDH-PGNL 212 (548) T ss_pred HHHhCCceEEEeeecccccccCCcccceEEEEechhhcCCCCCCCCCceeeeeEE----CCC-CceEEEEEeecC-CCcc Confidence 99999999999988631 2589999999862 222222333334311 011 111222222333 1100 Q ss_pred eeccceEEEEEEEeecCCccccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHH Q lcl|Aclame:pro 205 EEGESLYVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKK 284 (517) Q Consensus 205 ~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~ 284 (517) +. .+.. .-+ .-++..-++|+. .....+...|+|.|+.++..+.. T Consensus 213 -------------~~------~~~~----~~~---------~rvpA~~VlHif----~~~r~gQ~RGvs~lapvl~~l~~ 256 (548) T protein:vir:95 213 -------------QT------LGGS----LAV---------KRVEAERIIHIA----YRKRIGQNRGVPMLHAVLIRLAD 256 (548) T ss_pred -------------cc------cccc----cce---------eeechhHheecc----cccCCccccCcchHHHHHHHHHH Confidence 00 0000 000 011222233332 23345677899999999999999 Q ss_pred HHHHHHHHHHHHH-hccceeecchHHhccC-CCCcccccCccCCcccce-ee-eecCC--CCCCcceEEecccChHHHHH Q lcl|Aclame:pro 285 INDTYDQFWWEIK-MGQRTVFVSDVMLRTV-PDESGMPPPQVFDPDVNV-YK-SIRMG--TDEEFVKDVTHDIRTEQYKE 358 (517) Q Consensus 285 lD~~~s~~~~e~~-~~~~~i~v~~~~l~~~-~~~~~~~~~~~fd~~~~~-y~-~~~~~--~~~~~v~~~~~dir~e~~~~ 358 (517) |+.-.+.-..--+ .+--..|| ++. +++.... ....+..... +. +.... ..+..++.++|.-+...+.. T Consensus 257 l~~y~dael~~aki~A~~a~fi-----~~~~~~~~~~~-~~~~~~~~~~~~~pG~iv~~L~pGe~i~~~~p~~p~~~~~~ 330 (548) T protein:vir:95 257 LKDYEESERVAARISAALAMYI-----KKGNPDSYTVE-PGKDRKNRTIPIAPGMVFDDLEPGEDVGMIESNRPNPFLEG 330 (548) T ss_pred HhHHHHHHHHHHHHhhhheeee-----ecCCCccccCC-CCcccccccccccCCccccccCCCceeeecCCCCCCCCHHH Confidence 9865554333222 22223333 221 1111111 0000101000 11 00011 23445888888877778888 Q ss_pred HHHHHHHHHHHHhCCCccccccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhccCCCC-C- Q lcl|Aclame:pro 359 AINQALRTLEMELKLSVGTFSFDGRSMKTATEIVSENDLTYRTRNDHVYEVEQFIKG-LVISVLELAKTYKLFGGEI-P- 435 (517) Q Consensus 359 ~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a~~~~~~~t~~~~~~~~~~al~~-li~~il~~~~~~~~~~~~~-~- 435 (517) -...+++.|....|+++..++-|-++ |=.++++.-...-......|..+...+-+ +.+..+..+-. .+... + T Consensus 331 f~~~~lr~IAaglGipYe~ltgD~s~--nYSS~R~~l~e~~r~~~~~q~~~i~~~~~Pi~~~wle~a~l---~G~i~lP~ 405 (548) T protein:vir:95 331 FRNGQLRMIGAGTRSTYSSVSRAYDG--TYSAQRQELVEGWLGYDLLQHEFIDYWCRPVYRSWLQMYLL---ARKERLPA 405 (548) T ss_pred HHHHHHHHHHhhcCCCHHHHhcccch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCCcCCCC Confidence 88888999999999999999877542 32333333333333333333333333333 33333332221 11111 1 Q ss_pred ---CccceEEEe--CCCccCCHHHHHHHHHHHHhcCCCCHHHHHHhhCCCCHHHHHHHH----HHHHHhccc--cC---- Q lcl|Aclame:pro 436 ---SAEHIGVDF--DDGVFQDRSALLRFYGQAKTFGFIPTVEAIQRIFKVPKKTAEQWL----EEIRKDQIE--LD---- 500 (517) Q Consensus 436 ---~~~~v~i~f--~d~i~~d~~~~~~~~~~~~~~G~~S~~~~l~~~~~~~eeea~~el----~~i~~E~~~--~~---- 500 (517) ...-+.+.| .--..+|+.++++.....+.+|+.|.++.+++. |.+-+++.+++ +++++-... .+ T Consensus 406 ~~~~~~~~~~~W~~P~~~~iDP~Kea~A~~~~i~~Gl~T~~~~~a~~-G~D~~ev~~q~a~E~~~~~~~GL~~~~~~~~~ 484 (548) T protein:vir:95 406 DVDHRTLYAAVYQGPVMPWINPMHEANAWELLVKAGFADEAEVARAR-GRDPRELKKSRETEIKANRAAGLVFSSDAYHQ 484 (548) T ss_pred CCCchhheeeeeecCCccccChHHHHHHHHHHHHcCCCCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHcCCCCCCccccc Confidence 112256667 333457999999999999999999999988875 76655443332 333221110 01 Q ss_pred -------CCCCccccC-------CCCCCCCC Q lcl|Aclame:pro 501 -------PVTISQRAQ-------KRMFGDEE 517 (517) Q Consensus 501 -------~~~~~~~~~-------~~~~G~ee 517 (517) |..-.+... +|-.++|| T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (548) T protein:vir:95 485 LVKSGMDPVEAVQKVYLGVGKMLTADEAREL 515 (548) T ss_pred ccccccCCCCchhhhccccccccccchhHHh Confidence 110000000 11112222 No 88 >protein:vir:95449 Length: 584 # NCBI annotation: hypothetical protein ORF047 # Family: family:all:1548 # MgeID: mge:1570 # MgeName: PA11 # Cross-refs: genbank:acc:YP_001294640;genbank:gi:149408206;genbank:GeneID:5237016 Probab=99.31 E-value=9.1e-12 Score=81.10 Aligned_cols=450 Identities=11% Similarity=0.035 Sum_probs=196.2 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHH-----------HHHHHHHH---HHhcCCCcccccccccCccc Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNE-----------LARIERNL---RQYEGDYPQVEYINSQGKIQ 66 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----------~~~i~~~~---~~Y~g~~~~~~~~~~~~~~~ 66 (517) |. .+| +.++++...-++ .... ..-+++|+ .||.+...+ ....-+.. T Consensus 1 ~~--~~~-------------~~~~~~~~~~~~--~~~v~~~~~~~~~~r~~~~~~w~el~~y~~a~~~~---~~~~~~~~ 60 (584) T protein:vir:95 1 MS--VKV-------------AELNSLLVRDSS--AQWVAYLWDRFNNQRRQKIEEWKELRNYVFATDTT---TTSNQGLP 60 (584) T ss_pred CC--cch-------------hhhhhhccccch--HHHHHHHHHHHHhhhchhhccCHHHHHHHHhhhhh---hhhhcccc Confidence 11 111 122222210000 0000 00112232 234342111 11112222 Q ss_pred cccccccChHH----HHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCE Q lcl|Aclame:pro 67 ERDYMTLNLRK----LSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGL 142 (517) Q Consensus 67 ~~~~~~ln~~~----~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~ 142 (517) ++.+.++|-.. .|...+-+.+|+..-=+.+-........++..+..+.+++.-|.+.+|...+...+.++..+|.+ T Consensus 61 ~r~~~~~~k~~~~~~~i~~~l~~~~Fp~~~w~~~v~~~~~~~~~~~~~ai~~~i~dkl~e~~~~~~~~~~i~d~~~~G~~ 140 (584) T protein:vir:95 61 WKNSTTLPKLCQIRDNLHSNYFSSLFPNDDWLRWVGYGKGDSTKTKAKAIQAYMSNKCRESHFRTEVSKLIYDYIDYGNA 140 (584) T ss_pred cccccchhHHHHHHHHHHHHHHHhhcCccceeeeecCCCchhhHHHHHHHHHHHhhhhhhccHHHHHHHHHHhhccCCce Confidence 33344444333 33344445555543222222222122222333444455555567779999999999999999999 Q ss_pred EEEEEEeCC--------------eeEEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEe--------cCCcEE-------- Q lcl|Aclame:pro 143 TVRPYVDNG--------------EIEFSWALANAFYPLRSNSNGISEGVMKSVTTKVI--------GNKTVY-------- 192 (517) Q Consensus 143 ~~k~~~d~g--------------~~~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~--------~~~~~~-------- 192 (517) ++|.+|..+ +++|+-++|..+|| .-..+....+.|+.+...+. .++..+ T Consensus 141 ~~k~~~~~~~~e~~e~~~v~~~~~prieriSP~d~~~-Dpsa~~i~d~~fivrs~~T~~~L~~l~~~~~~~~y~~d~v~~ 219 (584) T protein:vir:95 141 FATVSFEAKYKEMTDGTLVPDYIGPRLVRISPLDIVF-NPLATSISDTFKIVRSVKTKGELMRLAQDEPEQSYWLEALKR 219 (584) T ss_pred EEEEeEeecceeeeccccccccccceEEeeChhheee-cCCCCCccchhhhhhhhhhHHHHHHHHhhcCccccchHHHHH Confidence 999999865 68999999999986 22223344444433111100 000000 Q ss_pred ---------------------------EEEEEEEeecceeeccceEEEEEEEeecC--C-ccccCcccccccccCCCCcc Q lcl|Aclame:pro 193 ---------------------------YTLLEFHEWEKTEEGESLYVITNELYKSD--N-EGEIGKRIPLEELYEGMQEK 242 (517) Q Consensus 193 ---------------------------yt~lE~h~~~~~~~~~~~y~I~n~ly~~~--~-~~~lG~~v~l~~~~~~l~~~ 242 (517) +-..|+|..+ +|+--.|... + ...=+...+.-.++ -.. T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ey~~~~---------~V~vl~~~g~~~~~~~~e~~~~~iv~v~---~g~ 287 (584) T protein:vir:95 220 REEICRHLGGYSVEDFDKAAGFDVDGFGNLYEYYMSD---------WVEILEFYGDYHDKETGELQTNRIITVV---DRS 287 (584) T ss_pred HHHhccCCCCCcccccccccccccccccccccccCCc---------eeEEEeecccccccccCCCcccceEEEE---ecc Confidence 0111111110 0000001000 0 00000000000000 000 Q ss_pred eEE------cCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHH-hccceeecchHHhccCCC Q lcl|Aclame:pro 243 TYI------QGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIK-MGQRTVFVSDVMLRTVPD 315 (517) Q Consensus 243 ~~~------~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~-~~~~~i~v~~~~l~~~~~ 315 (517) +.+ +..+++||+++.+ .| ...|.||.|+.+-+.++++.+|...-++.+.+. +..+ ++..++..... T Consensus 288 ~iIR~~~np~~~~~~PF~~~~~-~p---~~~s~yG~gi~~ll~d~Q~~lna~~r~~iDnl~l~~~p---v~k~~~~~~~~ 360 (584) T protein:vir:95 288 TEVRNESIPTWFGSAPIYHVGW-RF---RPDNLWAMGPLDNLVGMQYRIDHLENAKADAVDLIIQP---PLKIIGEVEEF 360 (584) T ss_pred EEEEeeecCCCCCCCCEEEEcc-ee---eeccccCCCchhhhhhHHHHHhHHHHHHHHHHHHhcCc---ceeeccccchh Confidence 011 2235666765543 33 346889999999999999999999999999885 3343 22333221111 Q ss_pred CcccccCccCCcccceeeeecCCCCCCcceEEeccc-ChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHHHHH Q lcl|Aclame:pro 316 ESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHDI-RTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVSE 394 (517) Q Consensus 316 ~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~di-r~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a~ 394 (517) -..++..|. . ++.+.++.+.|.- .+-+-...|+.+...++..+|.++..-|....+.+|||.+.+. T Consensus 361 --~~~pg~~~~------~-----~~~~~~q~~~p~a~~~~s~~~~lq~~e~~me~~sGvp~~~~G~~~~~~~TAtg~s~l 427 (584) T protein:vir:95 361 --VWGPGAEIH------L-----DQGGDVQEIAKNVNYIINADNQIQMLEDRMELYAGAPREAMGIRTPGEKTAFEVQQL 427 (584) T ss_pred --cccCCceee------c-----CCCCCcceecCchhhhhHHHHHHHHHHHHHHhhhCCChhhcccccchhhhHHHHHHH Confidence 011111111 1 2333466666632 1222223355566678889999999999888889999998777 Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhccCCCC---C-----------CccceEEEeC---CCc--cCCHHH Q lcl|Aclame:pro 395 NDLTYRTRNDHVYEVEQFI-KGLVISVLELAKTYKLFGGEI---P-----------SAEHIGVDFD---DGV--FQDRSA 454 (517) Q Consensus 395 ~~~~~~t~~~~~~~~~~al-~~li~~il~~~~~~~~~~~~~---~-----------~~~~v~i~f~---d~i--~~d~~~ 454 (517) -++.-.-++.+.+.|...| +.|+.++.++..-.--+.+.+ + ...++.-+|. ++. ....+. T Consensus 428 ~naa~~~~r~~~~~f~~~ll~~l~~ll~~~~~~nmd~~~~vr~~n~e~~~~~f~~i~r~Dl~g~~~~va~Ga~~~~~keq 507 (584) T protein:vir:95 428 GNAAGRIFQEKVTTFEVELLEPVLNAMLETATRNMDGSDVIRVMDTDLGVKEFMSVTREDITANGKIRPIGARHFGKQAQ 507 (584) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCceeeeccccccccccccChhhhccCeeEEeehhhHHHHHHH Confidence 7766666666777777666 788888877753211011110 0 0112222211 010 011122 Q ss_pred HHHHHHHHHhc--C-----CCCHH---HHHH---hhCC--CCHHHH--------HHHHHHHH-----HhccccCCCC Q lcl|Aclame:pro 455 LLRFYGQAKTF--G-----FIPTV---EAIQ---RIFK--VPKKTA--------EQWLEEIR-----KDQIELDPVT 503 (517) Q Consensus 455 ~~~~~~~~~~~--G-----~~S~~---~~l~---~~~~--~~eeea--------~~el~~i~-----~E~~~~~~~~ 503 (517) ..+...+..++ | -++.. ..|. ++++ .-..++ ++.+...+ +++.++..-. T Consensus 508 ~~q~l~~ilq~~~~~~i~p~~~~~~l~~~ladl~~~p~~~~~~~~~~~~~Q~~~q~~~~~~q~~~~~~~~~~~~~~~ 584 (584) T protein:vir:95 508 DLQNLVGIFNSQIGQMILPHTSGKALATFVDDVTGLQGYEIFRPNVAVAEQAETQSLVAQAQEDLQLQAQMPAEGAI 584 (584) T ss_pred HHHHHHHHHHhhhhhhccccchHHHHHHHHHHHhCCCcccccCCCcccchhHHHHhhhHHHHHHHHHHHhhhhccCC Confidence 22222222221 1 12222 1121 2222 111111 00000000 0111111111 No 89 >protein:vir:107742 Length: 537 # NCBI annotation: gp28 # Family: family:all:297 # MgeID: mge:1520 # MgeName: BcepB1A # Cross-refs: genbank:acc:YP_024875;genbank:gi:48697517;genbank:GeneID:2948359 Probab=99.29 E-value=1.3e-11 Score=80.36 Aligned_cols=437 Identities=10% Similarity=0.039 Sum_probs=194.9 Q ss_pred CchHHH---HHHHHHHHHHHhhcccchhhh-------c--cccCcCCH--HHHHHHHH---------HHH-HhcCCCccc Q lcl|Aclame:pro 1 MKVIQR---IKNFFKRGGYALSGQTLKSIN-------D--HEKINIDP--NELARIER---------NLR-QYEGDYPQV 56 (517) Q Consensus 1 m~~~~~---ik~~~~~~~~~~~~~~~~~~~-------~--~~~i~~~~--~~~~~i~~---------~~~-~Y~g~~~~~ 56 (517) |++|.+ .|.....+........++.=. + +..++++. .++..+.. +-. ||...+... T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (537) T protein:vir:10 25 VGIFGAGDDEKPFTRAQLVHQTMMAIRDHAIAMMPKVDGSHPDMAMDGLDVEGGTFSAYANPNLSEGLVLWYAQQAFIGH 104 (537) T ss_pred cCCCcccchhhHHHHHHhhhhccCCCCCccCcccccccccccchhccccccchhhhhhhccccccchhhhhccccCCccH Confidence 666632 333333222111111111000 0 01111110 00010100 001 111111110 Q ss_pred ccccccCccccccccccChHHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHH Q lcl|Aclame:pro 57 EYINSQGKIQERDYMTLNLRKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPT 136 (517) Q Consensus 57 ~~~~~~~~~~~~~~~~ln~~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a 136 (517) . ...-.....+++.||+..|+.++.+...|++.+....+ ....+.|+..++.-++...+.+++..+ T Consensus 105 ~--------l~a~Y~~~~l~r~iVd~~A~d~~r~~~~i~~~~~~~~~------~~~~~~l~~~~~~l~~~~~l~~a~~~~ 170 (537) T protein:vir:10 105 Q--------MCALIATHWLVNKACSQMPRDAMRKGYKIISDDGNELD------PKDAKFIDRYDRAFNIKKHAIQFVRKG 170 (537) T ss_pred H--------HHHHHHhCchhhhhhhhhhHHhhcCCceeecCCccccc------HHHHHHHHHHHHHhhHHHHHHHHHHhc Confidence 0 01112345789999999999999998888876532111 122345666666667899999999999 Q ss_pred HhhCCEEEEEEEe--CCeeE-----EEEEcCCeEEEEEEcCCceEEEEEE-EEEE-------EEecCCcEEEEEEEEEee Q lcl|Aclame:pro 137 FALGGLTVRPYVD--NGEIE-----FSWALANAFYPLRSNSNGISEGVMK-SVTT-------KVIGNKTVYYTLLEFHEW 201 (517) Q Consensus 137 ~~~G~~~~k~~~d--~g~~~-----i~~v~a~~~~P~~~~~~~~~~~a~~-~~~~-------~~~~~~~~~yt~lE~h~~ 201 (517) -.+|++++-+.++ +++.. ++.|.+.++.-+ .+|- +... ..+.....|| . + T Consensus 171 rlyG~~~i~i~v~~~D~~~~~~Pl~~~~i~kg~~k~l---------~vidp~~~~~~~~~~~~~dp~sp~fg-~-----P 235 (537) T protein:vir:10 171 RIFGIRIALFKVDSPDPYYYEKPFNIDGVMPGAYKGI---------VQIDPYWCAPLLDAQASSNPVSMHFY-E-----P 235 (537) T ss_pred ccccceEEEEeecCcCCcccccccccccccccceeEE---------EEechhhcccccchhhhccCCccccC-C-----c Confidence 9999988877664 22211 111111111100 0000 0000 0000000000 0 0 Q ss_pred cceeeccceEEEEEEEeecCCccccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccC-CCCCCcchhhhhHH Q lcl|Aclame:pro 202 EKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINP-HSPLGLGITDNSVS 280 (517) Q Consensus 202 ~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~-~splG~S~~~~~~~ 280 (517) ..|+|..+.| |+..+ +.+.|. +.|+-..+ ...+|+|++..+.+ T Consensus 236 -------~~y~v~g~~i----------------H~SRl---i~f~g~----------~~p~~~~~~~~~~G~Svlq~~~~ 279 (537) T protein:vir:10 236 -------TYWLINGKKY----------------HRSHL---AIYIND----------EVVDFLKPSYIYGGVPLPQQIME 279 (537) T ss_pred -------eeeeecCeEe----------------cceeE---EEecCC----------CCchhhhcccCcccccHHHHHHH Confidence 0111111101 01000 111111 12222111 22469999999999 Q ss_pred HHHHHHHHHHHHHHHHHhccceeecchHHhccCCCCccccc-CccCCcccceeeeecCCCCCCcceEEecccChHHHHHH Q lcl|Aclame:pro 281 TLKKINDTYDQFWWEIKMGQRTVFVSDVMLRTVPDESGMPP-PQVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEA 359 (517) Q Consensus 281 lid~lD~~~s~~~~e~~~~~~~i~v~~~~l~~~~~~~~~~~-~~~fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~ 359 (517) .+..++.+-.....-+.....+++--. ++....+..+... ...+..-+..+..+-.+.++..++.++.++ ...... T Consensus 280 ~l~~~~~t~~~~~~l~~~~~~~v~k~~-~~~~l~~~~~~~~r~~~~~~~r~n~g~~~id~e~e~~e~~~~~l--sgl~~~ 356 (537) T protein:vir:10 280 RVYAAERTANEGPMLAMTKRQTVLKVD-AAQVLANKQQFDETMSWWTATRDNYQVRVVDKDNEDVVQIDTTL--NDLDKV 356 (537) T ss_pred HHHHHHHHHHHHHHHHHhcCCceeeec-hHHhhcCHHHHHHHHHHHHhhcCCcceeEecCCCceeEEEeccC--CCHHHH Confidence 999999888888777754444444211 1111111111000 000111111111122233334565555433 344556 Q ss_pred HHHHHHHHHHHhCCCcccc-ccCCCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCc Q lcl|Aclame:pro 360 INQALRTLEMELKLSVGTF-SFDGRSM-KTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSA 437 (517) Q Consensus 360 l~~~l~~i~~~~g~s~~~~-~~~~~~~-~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~ 437 (517) ++.+...|+..+|++...+ |-...|. .|++ ...+-.+..++.+|..++..|+.|+..|+... ++ .. T Consensus 357 l~~~~~~iAa~~~IP~t~L~G~sp~GlnatGe---~D~~~yyd~I~~~Qe~l~p~l~~l~~ll~~~~-----~~----~~ 424 (537) T protein:vir:10 357 IMNQYQLVCAIARTPAPKMLGTVPTGFNSTGD---YEEASYHEECESTQDDMRPLIDRHHQLVCRSH-----LR----KR 424 (537) T ss_pred HHHHHHHHHhhhCCCceeeccCCccccccchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CC----CC Confidence 7777778888889976643 3222233 2333 33445666777777778999998888776431 12 13 Q ss_pred cceEEEeCCCccCCHHHHHHH-------HHHHHhcCCCCHHHHHHhh--------CCCCHHHHHHHHHHH--HHhcc--c Q lcl|Aclame:pro 438 EHIGVDFDDGVFQDRSALLRF-------YGQAKTFGFIPTVEAIQRI--------FKVPKKTAEQWLEEI--RKDQI--E 498 (517) Q Consensus 438 ~~v~i~f~d~i~~d~~~~~~~-------~~~~~~~G~~S~~~~l~~~--------~~~~eeea~~el~~i--~~E~~--~ 498 (517) .+++|.|+.-...|..+.++. +.+++.+|+||..++..++ +++....-.+..+.+ .+|.. + T Consensus 425 ~~~~i~f~pL~~~s~kEkAei~~~~a~a~~~~~~~G~i~~~Evr~~L~~~~~~g~~~l~~~~~~ed~e~~~~~~~~~~~~ 504 (537) T protein:vir:10 425 IRVKVEFPPMDAPKESERADTFLKKMQAAKLAFEMGAVDGVDVNEYLRMDPTLGFTSITPAMRPTDAEDIDVDDEGKPVR 504 (537) T ss_pred cceEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhccCccccccccCCCChhhhhcccCCccCCcCC Confidence 469999998777887776653 6778889999998766543 122111000111111 11111 1 Q ss_pred cCCCCCc--cccCCCCCCCCC Q lcl|Aclame:pro 499 LDPVTIS--QRAQKRMFGDEE 517 (517) Q Consensus 499 ~~~~~~~--~~~~~~~~G~ee 517 (517) .++...+ +..+....|++- T Consensus 505 ~~~~~~~~~~~~~~~~~~~~~ 525 (537) T protein:vir:10 505 IIEDQPAPSEMFGATSSGESA 525 (537) T ss_pred CCCCCCCccccCCCCcccccc Confidence 1111111 111111111111 No 90 >protein:vir:95821 Length: 763 # NCBI annotation: 94 kDa protein # Family: family:all:1548 # MgeID: mge:1586 # MgeName: N4 # Cross-refs: genbank:acc:YP_950537;genbank:gi:119952228;genbank:GeneID:5075648 Probab=99.27 E-value=2.4e-10 Score=73.36 Aligned_cols=471 Identities=10% Similarity=0.045 Sum_probs=193.0 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccChHHHHH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLRKLSA 80 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~~~i~ 80 (517) =-+.+-+|+.+.... ..-..++.++..|..||.+... .......|+.+...+ -....|= T Consensus 26 ~~~~~~l~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~grs~vv~~---~v~~~ve 84 (763) T protein:vir:95 26 ELSLQALKADLDAAK-----------------PSHTAMMIKVKEWNDLMRIEGK-AKPPKVKGRSQVQPK---LVRRQAE 84 (763) T ss_pred hHHHHHHHHHHHhhh-----------------cchhHHHHHHHHHHHhhhcccc-CcccccCCCccccCH---HHHHHHH Confidence 223344444443111 1123456677788887544421 122222332221111 1111222 Q ss_pred HHHhhhh---cCCcceeEecCcccccccccchhHHHHHHHHHHh-hhhHHHHHHHHHHHHHhhCCEEEEEEEeC------ Q lcl|Aclame:pro 81 DVLSGLV---FNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQ-HNKFIKNLSDYLEPTFALGGLTVRPYVDN------ 150 (517) Q Consensus 81 ~~~A~ll---~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~-~n~f~~~~~~~~~~a~~~G~~~~k~~~d~------ 150 (517) ..++.|+ ++..--+.+. +....+....+-.+.+++-++. .|+=...+..++.+|+..|.+++|+||+. T Consensus 85 ~~~~~l~~~f~~~~~~~~~~--P~~~~D~~~A~q~t~~~n~~~~~~~~~~~~~~~~~~~~l~~~~gv~k~~W~~~~~~~~ 162 (763) T protein:vir:95 85 WRYSALTEPFLGSNKLFKVT--PVTWEDVQGARQNELVLNYQFRTKLNRVSFIDNYVRSVVDDGTGIVRVGWNREIRKEK 162 (763) T ss_pred HHHHHHHHhhcCCCcEEEEe--cCCcchHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHhhcCcceEEEeeeeeeeeee Confidence 2222222 2222222221 1112222222333445555333 33444568899999999999999999961 Q ss_pred -------------------------------------------------------------------------CeeEEEE Q lcl|Aclame:pro 151 -------------------------------------------------------------------------GEIEFSW 157 (517) Q Consensus 151 -------------------------------------------------------------------------g~~~i~~ 157 (517) ++++|+. T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~p~ie~ 242 (763) T protein:vir:95 163 QEVPVFSLFPIQTQEQADALQQALQLRTDNPRGYEENVDEAIKESVRFFDETGQATYAVQTGTTTTEVEVPLANHPTVEM 242 (763) T ss_pred eeehhhhhccccchhHHHHHHHHHHhhhhhhccccccccchhhhhhhhccccCcceeeecccceeEEEEEEecCceEEEe Confidence 2346777 Q ss_pred EcCCeEEEEEEcCC-ceEEEEEEEEEE-EEec---CCcEEEEEEEE-----E--------eecceee----ccc-eEEEE Q lcl|Aclame:pro 158 ALANAFYPLRSNSN-GISEGVMKSVTT-KVIG---NKTVYYTLLEF-----H--------EWEKTEE----GES-LYVIT 214 (517) Q Consensus 158 v~a~~~~P~~~~~~-~~~~~a~~~~~~-~~~~---~~~~~yt~lE~-----h--------~~~~~~~----~~~-~y~I~ 214 (517) |+|..|++ .-+.. .+..+-|+.+.. .+.. ..+..|..++- + .+..... ..+ .-+.. T Consensus 243 V~p~d~~i-Dp~a~sD~~Da~~~~~~~~~t~~dL~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~V~v 321 (763) T protein:vir:95 243 LNPENIII-DPSCQGDINKAMFAIVSFETCKADLLKEKDRYHNLNKIDWQSSAPVNEPDHATTTPQEFQISDPMRKRVVA 321 (763) T ss_pred ecHHHhee-cCCCCCchhhCceEeeEEeccHHHHHhccCCccccchhcchhccccccccccccchhhccCCCcccceEEE Confidence 88888875 11211 123333322211 1100 00000110000 0 0000000 000 00111 Q ss_pred EEEeecCCccccCcccccccccCC-----CCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHH Q lcl|Aclame:pro 215 NELYKSDNEGEIGKRIPLEELYEG-----MQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTY 289 (517) Q Consensus 215 n~ly~~~~~~~lG~~v~l~~~~~~-----l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~ 289 (517) ++.|..-+...-|......-.+.+ ..+.- ...++.||+.|+. ++ ..++++|.|+++.+++.++.+|..+ T Consensus 322 ~E~y~~~d~~gdg~~~~~~v~~~g~~iL~~~~~p--~~~~~~PFv~~~~-~p---~~~~~~G~gi~~~~~d~Qr~~N~~~ 395 (763) T protein:vir:95 322 YEYWGFWDIEGNGVLEPIVATWIGSTLIRLEKNP--YPDGKLPFVLIPY-MP---VKRDMYGEPDAELLGDNQAVLGAVM 395 (763) T ss_pred EEeeeeeccCCcceeEEEEEEEEcCeeeeccccc--ccCCCcCEEEecc-ee---ecCcccCCchHHHhhHHHHHHHHHH Confidence 222321111000000000000000 00000 1123445665542 22 3477899999999999999999999 Q ss_pred HHHHHHHH-hccceeecchHHhccCCCCcccccCccCCcccc-eeeeecCCCCCCcceEEe-cccChHHHHHHHHHHHHH Q lcl|Aclame:pro 290 DQFWWEIK-MGQRTVFVSDVMLRTVPDESGMPPPQVFDPDVN-VYKSIRMGTDEEFVKDVT-HDIRTEQYKEAINQALRT 366 (517) Q Consensus 290 s~~~~e~~-~~~~~i~v~~~~l~~~~~~~~~~~~~~fd~~~~-~y~~~~~~~~~~~v~~~~-~dir~e~~~~~l~~~l~~ 366 (517) ++..+.+. .+++++.|+.+.+.....- . +..... .|.. +......++..+ |.+ -......++.+-.. T Consensus 396 ~~~~d~l~~~~~~~~~v~~gav~~~d~~---~----~~pg~v~~v~~--g~~~~~~~~~~~~p~~-~~~~~~~l~~~~~~ 465 (763) T protein:vir:95 396 RGMIDLLGRSANGQRGMPKGMLDALNSR---R----YREGEDYEYNP--TQNPAQMIIEHKFPEL-PQSALTMATLQNQE 465 (763) T ss_pred HHHHHHHHhhcCCcEEeecccccchhhh---c----ccCCceEEeeC--CCChhhhcccccCCCC-cchHHHHHHHHHHH Confidence 99999994 6788999987775321100 0 111111 1111 111111222222 222 22444555555556 Q ss_pred HHHHhCCCccccccCCCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCC---------C-- Q lcl|Aclame:pro 367 LEMELKLSVGTFSFDGRS-MKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGE---------I-- 434 (517) Q Consensus 367 i~~~~g~s~~~~~~~~~~-~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~---------~-- 434 (517) +...+|++....|.++.+ ..||+++....+.--.....+.+.|..+++.+.+.++.+...+ ++.. . T Consensus 466 ~e~~TGv~~~~~G~~~~~~~~tat~v~~l~qa~~~~~~~~~r~~~~~~k~l~~~~l~Li~q~--~d~~rviRI~g~e~v~ 543 (763) T protein:vir:95 466 AESLTGVKAFAGGVTGESYGDVAAGIRGVLDAASKREMAILRRLAKGMSEIGNKIIAMNAVF--LAEHEVVRITNEEFVT 543 (763) T ss_pred HHHhhCcchhhcCcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--CCCCcEEEEeCCcccc Confidence 677888988877765433 4678877776555545555667777788888888888876643 1110 0 Q ss_pred ------CCccceEEEeCCCccCCHHHHHHHHHHHHh-cC-CCCHHH--HH-HhhCCCCHHHHHHHHHHHHHhccccCCCC Q lcl|Aclame:pro 435 ------PSAEHIGVDFDDGVFQDRSALLRFYGQAKT-FG-FIPTVE--AI-QRIFKVPKKTAEQWLEEIRKDQIELDPVT 503 (517) Q Consensus 435 ------~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~-~G-~~S~~~--~l-~~~~~~~eeea~~el~~i~~E~~~~~~~~ 503 (517) ...++|.|+-+-+ ..+ .+..+..+++.. .| .+.... .| .......+ ..+.+..++.-+.+++|.. T Consensus 544 v~~~~~~~~~DV~V~~~~a-s~~-~q~~~~l~~ll~~l~~~~~~~~~~~il~~~~d~~~--~~~~~~~lr~~q~~~d~~~ 619 (763) T protein:vir:95 544 IKREDLKGNFDLEVDISTA-EVD-NQKSQDLGFMLQTIGPNVDQQITLNILAEIADLKR--MPKLAHDLRTWQPQPDPVQ 619 (763) T ss_pred ccHHHhcCCcceEEecccc-hHH-HHHHHHHHHHHHHhccccChHHHHHHHHHHHhhhc--hhhhHHHHHhcCCCccchh Confidence 1133444432211 111 122232333221 11 122111 01 00000000 0011122222221111110 Q ss_pred Cccc--cCCCCCCCCC Q lcl|Aclame:pro 504 ISQR--AQKRMFGDEE 517 (517) Q Consensus 504 ~~~~--~~~~~~G~ee 517 (517) ..+- .......+.+ T Consensus 620 q~qaqle~~~~q~e~~ 635 (763) T protein:vir:95 620 EQLKQLAVEKAQLENE 635 (763) T ss_pred hhHHHHHHHHHHHHHH Confidence 0000 0000000000 No 91 >protein:vir:5249 Length: 437 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:117 # MgeName: Aaphi23 # Cross-refs: genbank:acc:NP_852754;genbank:gi:31544029;interpro:IPR006445;uniprot:Q7Y5U6;genbank:GeneID:2753529 Probab=99.27 E-value=5.4e-11 Score=76.86 Aligned_cols=406 Identities=9% Similarity=0.052 Sum_probs=190.8 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccChHHHHH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLRKLSA 80 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~~~i~ 80 (517) |++.+...++.-.++..-..-. .. .-....... ......|+ +-.+++++| T Consensus 1 ~~~~D~~~~~~~~~g~~~~~~~-~~----~~~~~~~~~----~~l~a~Y~---------------------~~~l~~~~v 50 (437) T protein:vir:52 1 MKFFDGIKSLALKLGSKQEQTY-YS----PSLSLTDDL----VQLEALWR---------------------DNWIANKVC 50 (437) T ss_pred CchhhhhHhHHhcCCCccccce-ee----cCccccccH----HHHHHHHH---------------------hCchhhHHh Confidence 8888888887654442110000 00 000000000 11112232 235788999 Q ss_pred HHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeCCee------- Q lcl|Aclame:pro 81 DVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDNGEI------- 153 (517) Q Consensus 81 ~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~g~~------- 153 (517) +..|..++.+...|+.++.+. ..-+.+...++.-++...+.+++..+--+|++++-+..|+..+ T Consensus 51 d~~a~d~~r~~~~i~~~d~~~---------~~~~~~~~~~~~l~~~~~l~~a~~~~rl~G~a~i~i~~d~~~~~~pl~~~ 121 (437) T protein:vir:52 51 IKRPEDMVRNWREIYSNDLNS---------KQLDLFTKFERSLKLRETLTKALQWSSLYGSVGLLVVTDSQNTSAPLKPT 121 (437) T ss_pred hcchHHhhcCCceEecCCCCH---------HHHHHHHHHHHhhcHHHHHHHHHHhcccccceEEEEEecCCCcccccccC Confidence 999999999888887643221 1223455555555789999999999989999888877664221 Q ss_pred ---E-EEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcc Q lcl|Aclame:pro 154 ---E-FSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKR 229 (517) Q Consensus 154 ---~-i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~ 229 (517) + +.++++.++-|....... .....|+ ....|+|. .++. +.. T Consensus 122 ~~~~~~~v~~~~~v~~~~~~~~d--------------p~s~~fg-------------~p~~y~v~-----~~~~---~~~ 166 (437) T protein:vir:52 122 ERLKRLIILPKWKISPTGTKDDD--------------VLSPNFG-------------RYSEYSIL-----GGSQ---SIT 166 (437) T ss_pred CceeEEEEechhhcccccccccc--------------ccccccC-------------cceEEEEe-----cCCc---cee Confidence 1 222222222221100000 0000000 00112221 0000 000 Q ss_pred cccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeecchHH Q lcl|Aclame:pro 230 IPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRTVFVSDVM 309 (517) Q Consensus 230 v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~ 309 (517) | |+..+ +.+.| .+.|. ..+.-+|+|.+..+.+.|..++.+--....-+...+..++=...+ T Consensus 167 i----H~SRi---i~~~~--------~~~~~----~~~~~~G~s~le~~~~~i~~~~~~~~~~~~l~~~~~~~v~k~~~l 227 (437) T protein:vir:52 167 V----HHSRL---IILNA--------NDAPL----SDNDIWGVSDLEKIIDVLKRFDSASVNVGDLIFESKIDIFKIAGL 227 (437) T ss_pred E----cccee---EEecC--------ccCCC----ccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHcCCCceecchH Confidence 0 11100 11111 11221 123456999999999999999988877776664444444432222 Q ss_pred hccCCCCcccccCc---cCCcccceeeeecCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccc-cCCCcc Q lcl|Aclame:pro 310 LRTVPDESGMPPPQ---VFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFS-FDGRSM 385 (517) Q Consensus 310 l~~~~~~~~~~~~~---~fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~-~~~~~~ 385 (517) -.....++...... .+..-+.....+-.+. +..+++++.++ ..-...++.+...|+..++++...+- -..+|. T Consensus 228 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~e~~~~~~--sgl~~~l~~~~~~iaaa~~iP~t~L~G~s~~Gl 304 (437) T protein:vir:52 228 SDKIAAGMENEVASVISAVQEIKSATNSLLLDA-ENEYDRKELTF--TGLKDLLTEFRNAVAGAADMPVTILFGQSVSGL 304 (437) T ss_pred HHHhcCCcHHHHHHHHHHHHHhcCCCceEEEcC-CcceEEEecCc--CCHHHHHHHHHHHHHHHhcCchhhhcCcCcccc Confidence 21122221111100 0111111111111222 23466665543 34456677778889999999876552 222344 Q ss_pred chHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHH------ Q lcl|Aclame:pro 386 KTATEIVSENDLTYRTRNDHV-YEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRF------ 458 (517) Q Consensus 386 ~TAtei~a~~~~~~~t~~~~~-~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~------ 458 (517) +| +....+-.+..+..+| ..++..|+.|+..++.- .++.. ..+++|.|++-...+..+.++. T Consensus 305 as---ge~D~~~yyd~i~~~Qe~~l~p~le~l~~~i~~~-----~~g~~---~~~~~~~f~pL~~~s~kekae~~~~~a~ 373 (437) T protein:vir:52 305 AS---GDEDIQNYHEAIRRLQETRLRPIFEIIDPLICNE-----LFGGL---PADWWFEFVPLTTVKQEQQINMLNTFAT 373 (437) T ss_pred cc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCCC---CCcceEEeCCcCCcCHHHHHHHHHHHHH Confidence 33 3334445566666666 56888888888876532 12222 2368999998777886665554 Q ss_pred -HHHHHhcCCCCHHHHHHhh-----C-CCCHHHHHHHHHHHHHhcc-c-cCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 459 -YGQAKTFGFIPTVEAIQRI-----F-KVPKKTAEQWLEEIRKDQI-E-LDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 459 -~~~~~~~G~~S~~~~l~~~-----~-~~~eeea~~el~~i~~E~~-~-~~~~~~~~~~~~~~~G~ee 517 (517) +.+++++|++|..++..++ + ++++++.++. + ..++. . ..+.......+ ...+.+| T Consensus 374 a~~~~~~~g~i~~~e~r~~L~~~g~~~~i~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~-~~~~~~~ 437 (437) T protein:vir:52 374 AANTLIQNGVLNEYQIANELRESGLFANISAEHIEEL-K--NADEFAGNFEEPEKMEGAQ-VQNSEDQ 437 (437) T ss_pred HHHHHHhcCCCCHHHHHHHHHhcCCCCCCCccccccc-c--CCCCCCCccCCCCCCCCCC-CCCCCCC Confidence 4455667777776655432 1 1333211100 0 00000 0 00000000011 1112222 No 92 >protein:vir:104437 Length: 714 # NCBI annotation: putative phage portal protein # Family: family:all:487 # MgeID: mge:1471 # MgeName: 86 # Cross-refs: genbank:acc:YP_794061;genbank:gi:116222006;genbank:GeneID:4397502 Probab=99.21 E-value=5.7e-10 Score=71.25 Aligned_cols=461 Identities=11% Similarity=0.092 Sum_probs=221.4 Q ss_pred Cc-hH-HHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcc---cccccccCccccccccccCh Q lcl|Aclame:pro 1 MK-VI-QRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQ---VEYINSQGKIQERDYMTLNL 75 (517) Q Consensus 1 m~-~~-~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~---~~~~~~~~~~~~~~~~~ln~ 75 (517) +. +. +.+.+|.+ .+. -.++......++.+||.|.... +..... ..+...+.|+ T Consensus 17 ~~~~~~~~l~~~~~------------~~~------~~~~~r~~a~~d~~fy~G~Qw~~~~~~~l~~----~g~p~~~~N~ 74 (714) T protein:vir:10 17 TPRFSQRQLLSLCS------------DID------SQPLWRDAANKACAYYDGDQLAPEVIQVLKD----RGQPMTIHNL 74 (714) T ss_pred hhhhhHHHHHHHHH------------HHh------hhHHHHHHHHHHHHhhcCCCCCHHHHHHHHh----cCCCcEEecc Confidence 11 11 11111110 000 0123445566777899997532 111111 2234577898 Q ss_pred HHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe----CC Q lcl|Aclame:pro 76 RKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD----NG 151 (517) Q Consensus 76 ~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d----~g 151 (517) -+.++......--.-.+.+.|.-...+.......+.++..+..+...++.......+...++..|-||++.++| ++ T Consensus 75 i~~~v~~v~g~~~~nr~~~~v~pr~~~~~~~~~Ae~l~~~~~~~~~~~~~~~~~s~af~~~~~~G~G~~~~~~d~d~~~~ 154 (714) T protein:vir:10 75 IAPTVDGVLGMEAKTRTDLIVMSDDPNDETEKLAEAINAEFADACRLGNMNKARSDAYAEQIKAGLSWVEVRRNSEPFGP 154 (714) T ss_pred HHHHHHHHHHHHHhCCcceEEecCCCChhhHHHHHHHHHHHHHHHHhhchhHHHHHHHHHhhhcccceEEeeeccCCCCC Confidence 88888888888877788888853222222223456777778888888899999999999999999999999987 36 Q ss_pred eeEEEEEcCCeEEEEEEcCC--ceEEEEEEEEEEEEe------------------------------------------- Q lcl|Aclame:pro 152 EIEFSWALANAFYPLRSNSN--GISEGVMKSVTTKVI------------------------------------------- 186 (517) Q Consensus 152 ~~~i~~v~a~~~~P~~~~~~--~~~~~a~~~~~~~~~------------------------------------------- 186 (517) .++|..|+|..|++ ..+.. ....|-++++..... T Consensus 155 ~i~i~~v~p~~v~~-Dp~a~~~D~sDar~~~~~~~~~~~~~~~~fp~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (714) T protein:vir:10 155 EFKVSTVSRNEVFW-DWLSREADLSDCRWLMRRRWMDTDEAKATFPGMAQVIDYAIDDWRGFVDTTVTEGQPSPLMSAWE 233 (714) T ss_pred CeEEEecChhheee-ccccccCChhhhhhhhhhccCCHHHHHHhcCCchhhhhccchhhcCcccchhhhhhcccccccch Confidence 79999999999885 11111 111222221110000 Q ss_pred -------------cCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCccccccc--------ccCC---CC-- Q lcl|Aclame:pro 187 -------------GNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEE--------LYEG---MQ-- 240 (517) Q Consensus 187 -------------~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~--------~~~~---l~-- 240 (517) ....+..++.|++... .+...++...+ |..+.... +-.+ +. T Consensus 234 ~~~~~~~~~~~~~~~~~~rV~v~E~w~k~---------~~~~~~~~~~~----g~~~~~d~~~~~~~~~~~~g~~~~~~~ 300 (714) T protein:vir:10 234 EYQSWDRQQNEWLQRERRRVLLQVVYYRT---------FERLPVIELSN----GRVVAFDKNNLMQAVAVASGRVQVKVG 300 (714) T ss_pred hhcccccccccccccCcceEEEEEEEEeE---------EEEEEeecCCC----CCeeeeCccCHHHHHHHHhccceeccc Confidence 0001122333332110 00111111111 11111100 0000 00 Q ss_pred --c---ceEEcC----------CCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeec Q lcl|Aclame:pro 241 --E---KTYIQG----------LSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRTVFV 305 (517) Q Consensus 241 --~---~~~~~g----------~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v 305 (517) . ...++| ++.-.|.++|....-......|+| .+.++++.++.+|...|+..+.+ +..++++ T Consensus 301 ~~~rv~~~~~~g~~~L~~~~~p~p~~~fp~vP~~g~~~~~~g~~~G--~vr~~~d~Qr~~N~~~s~~~~~l--~~~~~~~ 376 (714) T protein:vir:10 301 RVSRIREAWFVGPHFIVDRPCSAPQGMFPLVPFWGYRKDKTGEPYG--LISRAIPAQDEVNFRRIKLTWLL--QAKRVIM 376 (714) T ss_pred ceeeEEEEEEecchhhhcCCCCCCCCceeeEEecceeeeccCccce--ehhhhhhHHHHHHHHHHHHHHHH--hCCceee Confidence 0 001111 111113333322221122234554 58889999999999999998876 3345566 Q ss_pred chHHhccCCCCcccccCccCCcccceeeeec--CCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCC Q lcl|Aclame:pro 306 SDVMLRTVPDESGMPPPQVFDPDVNVYKSIR--MGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGR 383 (517) Q Consensus 306 ~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~--~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~ 383 (517) .+..+.... ..-......++.. -.|.+.. +......++..++.=-..+++..++.....|...+|++...+|..++ T Consensus 377 ~~gav~~~d-~~~~e~~~rp~~v-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llq~~~~~i~~~tGv~~~~lG~~~n 454 (714) T protein:vir:10 377 DEDATQLSD-NDLMEQLERPDGI-IKLNPVRKNQKSVADVFRVEQDFQVASQQFQVMQESEKLIQDTMGVYSAFLGQDSG 454 (714) T ss_pred ccccccccH-HHHHHhccCCCCe-EEecccccccCCccccccccCCCCCcHHHHHHHHHHHHHHHHhhCCCHHHcCCCcc Confidence 544432111 0000000001100 0122211 11222345554433223577888988888899999999998886532 Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCC--------C-------------------- Q lcl|Aclame:pro 384 SMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEI--------P-------------------- 435 (517) Q Consensus 384 ~~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~--------~-------------------- 435 (517) ..++.+|.++..........+...++.+++.+-+.++.+...+ ++..- . T Consensus 455 -a~SGvAI~~r~~qg~~~l~~~~dnl~~~~~~~g~~ll~li~~~--~~~~rv~RI~~e~~~~~~~~~~~~n~~~~~~~~~ 531 (714) T protein:vir:10 455 -ATSGVAISNLVEQGATTLAEINDNYQFACQQVGRLLLAYLLDD--LKKRRNHAVVINRDDRQRRQTIVLNAEGDNGELT 531 (714) T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCcEEEEeccCCCcccceeEeeccccCCcccc Confidence 3345556666555555666677777778877777777765431 11100 0 Q ss_pred -----CccceEEEeCCCccCCHHHHHHHHHHHHhcCCCCHH------HHHHhhCCCCHHHHHHHHHHHHHhccccCCCCC Q lcl|Aclame:pro 436 -----SAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTV------EAIQRIFKVPKKTAEQWLEEIRKDQIELDPVTI 504 (517) Q Consensus 436 -----~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~------~~l~~~~~~~eeea~~el~~i~~E~~~~~~~~~ 504 (517) ..++|+|+=..+.+.-.++.++.++++..+ +++. ..+..+-++.- +++.+++|++-.....+... T Consensus 532 nDi~~~~~dv~i~~~p~~~s~r~~~~~~l~ql~~~--~~p~~~~~~~~~~le~~d~p~--~~ei~~~ir~~~~~~~~~~~ 607 (714) T protein:vir:10 532 NDISRLNTHIALAPVQQTPAFKAQLAQRMSEVIQG--LPPQVQAVVLDLWVNLLDVPQ--KQEFVERIRAALGTPKSPDE 607 (714) T ss_pred ccceeeeEEEEEeeccCcHHHHHHHHHHHHHHHhh--cCchhhhhHHHHHHHhcCCcC--HHHHHHHHHHHcCCCCCccc Confidence 011222221122222244445555555542 2221 22334444422 34456666654433222111 Q ss_pred ccccCCCCCCCCC Q lcl|Aclame:pro 505 SQRAQKRMFGDEE 517 (517) Q Consensus 505 ~~~~~~~~~G~ee 517 (517) .+ -++. T Consensus 608 ~~-------~e~q 613 (714) T protein:vir:10 608 MT-------PEEQ 613 (714) T ss_pred cC-------cchh Confidence 00 0111 No 93 >protein:vir:2764 Length: 714 # NCBI annotation: hypothetical protein # Family: family:all:487 # MgeID: mge:59 # MgeName: Stx2 converting bacteriophage I # Cross-refs: genbank:acc:NP_612881;genbank:gi:20065798;genbank:GeneID:935623 Probab=99.19 E-value=7.3e-10 Score=70.68 Aligned_cols=471 Identities=11% Similarity=0.082 Sum_probs=225.3 Q ss_pred CchHHHH-----HHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcc---cccccccCccccccccc Q lcl|Aclame:pro 1 MKVIQRI-----KNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQ---VEYINSQGKIQERDYMT 72 (517) Q Consensus 1 m~~~~~i-----k~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~---~~~~~~~~~~~~~~~~~ 72 (517) +.|-.++ .++.++...++.. ++.-.++.+....+..+||.|.... +..... ..+...+ T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~R~~a~~d~~fy~G~Qw~~~~~~~l~~----~g~p~~~ 71 (714) T protein:vir:27 6 NTMATKNDNGATPRFSQRQLQALCS----------DIDSQPKWRDAANKACAYYDGDQLPPEVLQVLKD----RGQPMTI 71 (714) T ss_pred ccccCCCCcchhHHHHHHHHHHHHH----------HHHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHh----cCCCcEE Confidence 2222221 1122211111110 0111233445556667899997532 111111 2234577 Q ss_pred cChHHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe--- Q lcl|Aclame:pro 73 LNLRKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD--- 149 (517) Q Consensus 73 ln~~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d--- 149 (517) .|+-+.++......--.-.+.+.|.-..-+.......+.++..+..+.+.+++.....++..+++..|-||+..+++ T Consensus 72 ~N~i~~~v~~v~g~~~~nr~~~~v~p~~~~~~~~~~Ae~l~~~~~~~~~~~~~~~~~s~af~~~~~~G~G~~~~~~~~d~ 151 (714) T protein:vir:27 72 HNLIAPTVDGVLGMEAKTRTDLVVMSDEPDDETEKLAEAINAEFADACRLGNMNKARSDAYAEQIKAGLSWVEVRRNSDP 151 (714) T ss_pred eccHHHHHHHHHhHHHhCCcceEEecCCCCchhHHHHHHHHHHHHHHHHhhchhHHHHHHHHHhhhcCcceEEeccccCC Confidence 89888899888888877788888853221222223556677788888888899999999999999999999999987 Q ss_pred -CCeeEEEEEcCCeEEEEEEcC--CceEEEEEEEEEEEEe--------cC------------------------------ Q lcl|Aclame:pro 150 -NGEIEFSWALANAFYPLRSNS--NGISEGVMKSVTTKVI--------GN------------------------------ 188 (517) Q Consensus 150 -~g~~~i~~v~a~~~~P~~~~~--~~~~~~a~~~~~~~~~--------~~------------------------------ 188 (517) ++.++|..|+|..|++ ..++ .....|-++++..... ++ T Consensus 152 ~~~~i~i~~v~p~~v~~-Dp~a~~~D~sDar~~~~~~~~~~~~~~~~fP~~a~~i~~~~~~~~~~~d~~~~~~~~~~~~~ 230 (714) T protein:vir:27 152 FGPEFKVSTVSRNEVFW-DWLSREADLSDCRWLMRRRWMDTDEAKATFPGMAQVIDYAIDDWRGFVDTTVTEGQPSPLMS 230 (714) T ss_pred CCCCeEEEecchhheee-ccccccCChhhccceeeeecCCHHHHHHhcCCchhhhhhhhhhhcccccccccccccccccc Confidence 3578999999999885 1111 1123333333222111 00 Q ss_pred ------------------CcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccc-----------cCCC Q lcl|Aclame:pro 189 ------------------KTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEEL-----------YEGM 239 (517) Q Consensus 189 ------------------~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~-----------~~~l 239 (517) ..+..+..|++... .+...++...+ |..+..... ...+ T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~rv~v~E~w~k~---------~~~~~~~~~~~----g~~~~~d~~~~~~~~~~~~g~~~~ 297 (714) T protein:vir:27 231 AWEEYQSWDRQQNEWLQRERRRVLLQVVYYRT---------FERLPVIELSN----GRVVAFDKNNLMQAVAVASGRVQV 297 (714) T ss_pred chhhhccccccccccccccccEEEEEEEEEEE---------EEEEEeeccCC----CceEEeCccCHHHHHHHhhcchhh Confidence 00111111211000 00011111111 111111100 0000 Q ss_pred C-------cceEEcC----------CCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccce Q lcl|Aclame:pro 240 Q-------EKTYIQG----------LSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRT 302 (517) Q Consensus 240 ~-------~~~~~~g----------~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~ 302 (517) . ...+++| ++.--|-++|.-..-....+.|+| .+.++++.++.+|...|+..+.+ +..+ T Consensus 298 ~~~~~~rv~~~~~~g~~~L~~~~~p~p~~~fp~vp~~g~~~~~~g~~~G--~vr~~~d~Qr~~N~~~s~~~~~l--~~~~ 373 (714) T protein:vir:27 298 KVGRVSRIREAWFVGPHFIVDRPCSAPQGMFPLVPFWGYRKDKTGEPYG--LISRAIPAQDEVNFRRIKLTWLL--QAKR 373 (714) T ss_pred hccccceEEEEEEecCcccccCCCCCCCCceeEEEEeeeeeeccCceee--hhhhchhHHHHHHHHHHHHHHhh--cCCc Confidence 0 0011111 000012222111111112234554 57889999999999999998866 3444 Q ss_pred eecchHHhccCCCCcccccCccCCcccceeeeec--CCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCcccccc Q lcl|Aclame:pro 303 VFVSDVMLRTVPDESGMPPPQVFDPDVNVYKSIR--MGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSF 380 (517) Q Consensus 303 i~v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~--~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~ 380 (517) +++.+..+..... .-......++.. -.|.+.. +......++..++.--..++++.++.....|...+|++...+|. T Consensus 374 ~~~~~~a~~~~d~-~~~e~~arp~~v-i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~llq~~~~~i~~~tGv~~~~lG~ 451 (714) T protein:vir:27 374 VIMDEDATQLSDN-DLMEQIERPDGI-IKLNPVRKNQKSVADVFRVEQDFQVASQQFQVMQESEKLIQDTMGVYSAFLGQ 451 (714) T ss_pred eeeecCcccccHH-HHHHhccCCCCc-eeecccccccCCCCccccccCCCCccHHHHHHHHHHHHHHHHhhCCChHHcCC Confidence 5554333211100 000000001100 0111111 11112234444433335678888888888899999999999886 Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-h---ccCCC---C------------------- Q lcl|Aclame:pro 381 DGRSMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTY-K---LFGGE---I------------------- 434 (517) Q Consensus 381 ~~~~~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~-~---~~~~~---~------------------- 434 (517) .+. ..++..|.++..............++.+++.+-+.+|.+...+ + .+... . T Consensus 452 ~~n-a~SGvAi~~rq~qg~~~l~~~~Dnl~~~~~~~g~~lL~li~~~~~~erv~RI~~e~~~~~~~~~v~in~~~~~~~~ 530 (714) T protein:vir:27 452 DSG-ATSGVAISNLVEQGATTLAEINDNYQFACQQVGRLLLAYLLDDLKKRRNHAVVINRDDRQRRQTIVLNAEGDNGEL 530 (714) T ss_pred Ccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEeccCCCcCcceEEeeccccCccee Confidence 543 3345556666655555556667777777777777776654321 1 11000 0 Q ss_pred -----CCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCCHH------HHHHhhCCCCHHHHHHHHHHHHHhccccCCCC Q lcl|Aclame:pro 435 -----PSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTV------EAIQRIFKVPKKTAEQWLEEIRKDQIELDPVT 503 (517) Q Consensus 435 -----~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~------~~l~~~~~~~eeea~~el~~i~~E~~~~~~~~ 503 (517) ...++|+|+=..+.+.-.++.++.++++..+ +++. ..+.++-++.. +++.+++|++-+...++.. T Consensus 531 ~nDi~~~~~Dv~i~~~p~~~t~r~~~~~~l~~l~~~--~~p~~~~~~~~~~l~~~d~p~--~~el~~~ir~~~~~~~~~~ 606 (714) T protein:vir:27 531 TNDISRLNTHIALAPVQQTPAFKAQLAQRMSEVIQG--LPPQVQAVVLDLWVNLLDVPQ--KQEFVERIRAALGTPKSPD 606 (714) T ss_pred cccceeeeEEEEEeeccCchHHHHHHHHHHHHHHhh--cCchhhhhHHHHHHHhcCCCC--HHHHHHHHHHHcCCCCCcc Confidence 0122344443333333345666666666643 3332 12334445532 4556777766443332211 Q ss_pred CccccCCCCCCCCC Q lcl|Aclame:pro 504 ISQRAQKRMFGDEE 517 (517) Q Consensus 504 ~~~~~~~~~~G~ee 517 (517) ..+ -+++ T Consensus 607 ~~~-------~e~q 613 (714) T protein:vir:27 607 EMT-------PEEQ 613 (714) T ss_pred ccc-------hhhH Confidence 111 0111 No 94 >protein:vir:817 Length: 714 # NCBI annotation: hypothetical protein # Family: family:all:487 # MgeID: mge:16 # MgeName: VT2-Sa # Cross-refs: genbank:acc:NP_050550;genbank:gi:9633447;genbank:GeneID:1262279 Probab=99.19 E-value=7.3e-10 Score=70.68 Aligned_cols=471 Identities=11% Similarity=0.082 Sum_probs=225.3 Q ss_pred CchHHHH-----HHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcc---cccccccCccccccccc Q lcl|Aclame:pro 1 MKVIQRI-----KNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQ---VEYINSQGKIQERDYMT 72 (517) Q Consensus 1 m~~~~~i-----k~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~---~~~~~~~~~~~~~~~~~ 72 (517) +.|-.++ .++.++...++.. ++.-.++.+....+..+||.|.... +..... ..+...+ T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~R~~a~~d~~fy~G~Qw~~~~~~~l~~----~g~p~~~ 71 (714) T protein:vir:81 6 NTMATKNDNGATPRFSQRQLQALCS----------DIDSQPKWRDAANKACAYYDGDQLPPEVLQVLKD----RGQPMTI 71 (714) T ss_pred ccccCCCCcchhHHHHHHHHHHHHH----------HHHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHh----cCCCcEE Confidence 2222221 1122211111110 0111233445556667899997532 111111 2234577 Q ss_pred cChHHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe--- Q lcl|Aclame:pro 73 LNLRKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD--- 149 (517) Q Consensus 73 ln~~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d--- 149 (517) .|+-+.++......--.-.+.+.|.-..-+.......+.++..+..+.+.+++.....++..+++..|-||+..+++ T Consensus 72 ~N~i~~~v~~v~g~~~~nr~~~~v~p~~~~~~~~~~Ae~l~~~~~~~~~~~~~~~~~s~af~~~~~~G~G~~~~~~~~d~ 151 (714) T protein:vir:81 72 HNLIAPTVDGVLGMEAKTRTDLVVMSDEPDDETEKLAEAINAEFADACRLGNMNKARSDAYAEQIKAGLSWVEVRRNSDP 151 (714) T ss_pred eccHHHHHHHHHhHHHhCCcceEEecCCCCchhHHHHHHHHHHHHHHHHhhchhHHHHHHHHHhhhcCcceEEeccccCC Confidence 89888899888888877788888853221222223556677788888888899999999999999999999999987 Q ss_pred -CCeeEEEEEcCCeEEEEEEcC--CceEEEEEEEEEEEEe--------cC------------------------------ Q lcl|Aclame:pro 150 -NGEIEFSWALANAFYPLRSNS--NGISEGVMKSVTTKVI--------GN------------------------------ 188 (517) Q Consensus 150 -~g~~~i~~v~a~~~~P~~~~~--~~~~~~a~~~~~~~~~--------~~------------------------------ 188 (517) ++.++|..|+|..|++ ..++ .....|-++++..... ++ T Consensus 152 ~~~~i~i~~v~p~~v~~-Dp~a~~~D~sDar~~~~~~~~~~~~~~~~fP~~a~~i~~~~~~~~~~~d~~~~~~~~~~~~~ 230 (714) T protein:vir:81 152 FGPEFKVSTVSRNEVFW-DWLSREADLSDCRWLMRRRWMDTDEAKATFPGMAQVIDYAIDDWRGFVDTTVTEGQPSPLMS 230 (714) T ss_pred CCCCeEEEecchhheee-ccccccCChhhccceeeeecCCHHHHHHhcCCchhhhhhhhhhhcccccccccccccccccc Confidence 3578999999999885 1111 1123333333222111 00 Q ss_pred ------------------CcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccc-----------cCCC Q lcl|Aclame:pro 189 ------------------KTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEEL-----------YEGM 239 (517) Q Consensus 189 ------------------~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~-----------~~~l 239 (517) ..+..+..|++... .+...++...+ |..+..... ...+ T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~rv~v~E~w~k~---------~~~~~~~~~~~----g~~~~~d~~~~~~~~~~~~g~~~~ 297 (714) T protein:vir:81 231 AWEEYQSWDRQQNEWLQRERRRVLLQVVYYRT---------FERLPVIELSN----GRVVAFDKNNLMQAVAVASGRVQV 297 (714) T ss_pred chhhhccccccccccccccccEEEEEEEEEEE---------EEEEEeeccCC----CceEEeCccCHHHHHHHhhcchhh Confidence 00111111211000 00011111111 111111100 0000 Q ss_pred C-------cceEEcC----------CCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccce Q lcl|Aclame:pro 240 Q-------EKTYIQG----------LSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRT 302 (517) Q Consensus 240 ~-------~~~~~~g----------~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~ 302 (517) . ...+++| ++.--|-++|.-..-....+.|+| .+.++++.++.+|...|+..+.+ +..+ T Consensus 298 ~~~~~~rv~~~~~~g~~~L~~~~~p~p~~~fp~vp~~g~~~~~~g~~~G--~vr~~~d~Qr~~N~~~s~~~~~l--~~~~ 373 (714) T protein:vir:81 298 KVGRVSRIREAWFVGPHFIVDRPCSAPQGMFPLVPFWGYRKDKTGEPYG--LISRAIPAQDEVNFRRIKLTWLL--QAKR 373 (714) T ss_pred hccccceEEEEEEecCcccccCCCCCCCCceeEEEEeeeeeeccCceee--hhhhchhHHHHHHHHHHHHHHhh--cCCc Confidence 0 0011111 000012222111111112234554 57889999999999999998866 3444 Q ss_pred eecchHHhccCCCCcccccCccCCcccceeeeec--CCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCcccccc Q lcl|Aclame:pro 303 VFVSDVMLRTVPDESGMPPPQVFDPDVNVYKSIR--MGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSF 380 (517) Q Consensus 303 i~v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~--~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~ 380 (517) +++.+..+..... .-......++.. -.|.+.. +......++..++.--..++++.++.....|...+|++...+|. T Consensus 374 ~~~~~~a~~~~d~-~~~e~~arp~~v-i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~llq~~~~~i~~~tGv~~~~lG~ 451 (714) T protein:vir:81 374 VIMDEDATQLSDN-DLMEQIERPDGI-IKLNPVRKNQKSVADVFRVEQDFQVASQQFQVMQESEKLIQDTMGVYSAFLGQ 451 (714) T ss_pred eeeecCcccccHH-HHHHhccCCCCc-eeecccccccCCCCccccccCCCCccHHHHHHHHHHHHHHHHhhCCChHHcCC Confidence 5554333211100 000000001100 0111111 11112234444433335678888888888899999999999886 Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-h---ccCCC---C------------------- Q lcl|Aclame:pro 381 DGRSMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTY-K---LFGGE---I------------------- 434 (517) Q Consensus 381 ~~~~~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~-~---~~~~~---~------------------- 434 (517) .+. ..++..|.++..............++.+++.+-+.+|.+...+ + .+... . T Consensus 452 ~~n-a~SGvAi~~rq~qg~~~l~~~~Dnl~~~~~~~g~~lL~li~~~~~~erv~RI~~e~~~~~~~~~v~in~~~~~~~~ 530 (714) T protein:vir:81 452 DSG-ATSGVAISNLVEQGATTLAEINDNYQFACQQVGRLLLAYLLDDLKKRRNHAVVINRDDRQRRQTIVLNAEGDNGEL 530 (714) T ss_pred Ccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEeccCCCcCcceEEeeccccCccee Confidence 543 3345556666655555556667777777777777776654321 1 11000 0 Q ss_pred -----CCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCCHH------HHHHhhCCCCHHHHHHHHHHHHHhccccCCCC Q lcl|Aclame:pro 435 -----PSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTV------EAIQRIFKVPKKTAEQWLEEIRKDQIELDPVT 503 (517) Q Consensus 435 -----~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~------~~l~~~~~~~eeea~~el~~i~~E~~~~~~~~ 503 (517) ...++|+|+=..+.+.-.++.++.++++..+ +++. ..+.++-++.. +++.+++|++-+...++.. T Consensus 531 ~nDi~~~~~Dv~i~~~p~~~t~r~~~~~~l~~l~~~--~~p~~~~~~~~~~l~~~d~p~--~~el~~~ir~~~~~~~~~~ 606 (714) T protein:vir:81 531 TNDISRLNTHIALAPVQQTPAFKAQLAQRMSEVIQG--LPPQVQAVVLDLWVNLLDVPQ--KQEFVERIRAALGTPKSPD 606 (714) T ss_pred cccceeeeEEEEEeeccCchHHHHHHHHHHHHHHhh--cCchhhhhHHHHHHHhcCCCC--HHHHHHHHHHHcCCCCCcc Confidence 0122344443333333345666666666643 3332 12334445532 4556777766443332211 Q ss_pred CccccCCCCCCCCC Q lcl|Aclame:pro 504 ISQRAQKRMFGDEE 517 (517) Q Consensus 504 ~~~~~~~~~~G~ee 517 (517) ..+ -+++ T Consensus 607 ~~~-------~e~q 613 (714) T protein:vir:81 607 EMT-------PEEQ 613 (714) T ss_pred ccc-------hhhH Confidence 111 0111 No 95 >protein:vir:3296 Length: 714 # NCBI annotation: putative portal protein # Family: family:all:487 # MgeID: mge:66 # MgeName: 933W # Cross-refs: genbank:acc:NP_049512;genbank:gi:9632518;genbank:GeneID:1262005 Probab=99.19 E-value=7.3e-10 Score=70.68 Aligned_cols=471 Identities=11% Similarity=0.082 Sum_probs=225.3 Q ss_pred CchHHHH-----HHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcc---cccccccCccccccccc Q lcl|Aclame:pro 1 MKVIQRI-----KNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQ---VEYINSQGKIQERDYMT 72 (517) Q Consensus 1 m~~~~~i-----k~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~---~~~~~~~~~~~~~~~~~ 72 (517) +.|-.++ .++.++...++.. ++.-.++.+....+..+||.|.... +..... ..+...+ T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~R~~a~~d~~fy~G~Qw~~~~~~~l~~----~g~p~~~ 71 (714) T protein:vir:32 6 NTMATKNDNGATPRFSQRQLQALCS----------DIDSQPKWRDAANKACAYYDGDQLPPEVLQVLKD----RGQPMTI 71 (714) T ss_pred ccccCCCCcchhHHHHHHHHHHHHH----------HHHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHh----cCCCcEE Confidence 2222221 1122211111110 0111233445556667899997532 111111 2234577 Q ss_pred cChHHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe--- Q lcl|Aclame:pro 73 LNLRKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD--- 149 (517) Q Consensus 73 ln~~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d--- 149 (517) .|+-+.++......--.-.+.+.|.-..-+.......+.++..+..+.+.+++.....++..+++..|-||+..+++ T Consensus 72 ~N~i~~~v~~v~g~~~~nr~~~~v~p~~~~~~~~~~Ae~l~~~~~~~~~~~~~~~~~s~af~~~~~~G~G~~~~~~~~d~ 151 (714) T protein:vir:32 72 HNLIAPTVDGVLGMEAKTRTDLVVMSDEPDDETEKLAEAINAEFADACRLGNMNKARSDAYAEQIKAGLSWVEVRRNSDP 151 (714) T ss_pred eccHHHHHHHHHhHHHhCCcceEEecCCCCchhHHHHHHHHHHHHHHHHhhchhHHHHHHHHHhhhcCcceEEeccccCC Confidence 89888899888888877788888853221222223556677788888888899999999999999999999999987 Q ss_pred -CCeeEEEEEcCCeEEEEEEcC--CceEEEEEEEEEEEEe--------cC------------------------------ Q lcl|Aclame:pro 150 -NGEIEFSWALANAFYPLRSNS--NGISEGVMKSVTTKVI--------GN------------------------------ 188 (517) Q Consensus 150 -~g~~~i~~v~a~~~~P~~~~~--~~~~~~a~~~~~~~~~--------~~------------------------------ 188 (517) ++.++|..|+|..|++ ..++ .....|-++++..... ++ T Consensus 152 ~~~~i~i~~v~p~~v~~-Dp~a~~~D~sDar~~~~~~~~~~~~~~~~fP~~a~~i~~~~~~~~~~~d~~~~~~~~~~~~~ 230 (714) T protein:vir:32 152 FGPEFKVSTVSRNEVFW-DWLSREADLSDCRWLMRRRWMDTDEAKATFPGMAQVIDYAIDDWRGFVDTTVTEGQPSPLMS 230 (714) T ss_pred CCCCeEEEecchhheee-ccccccCChhhccceeeeecCCHHHHHHhcCCchhhhhhhhhhhcccccccccccccccccc Confidence 3578999999999885 1111 1123333333222111 00 Q ss_pred ------------------CcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccc-----------cCCC Q lcl|Aclame:pro 189 ------------------KTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEEL-----------YEGM 239 (517) Q Consensus 189 ------------------~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~-----------~~~l 239 (517) ..+..+..|++... .+...++...+ |..+..... ...+ T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~rv~v~E~w~k~---------~~~~~~~~~~~----g~~~~~d~~~~~~~~~~~~g~~~~ 297 (714) T protein:vir:32 231 AWEEYQSWDRQQNEWLQRERRRVLLQVVYYRT---------FERLPVIELSN----GRVVAFDKNNLMQAVAVASGRVQV 297 (714) T ss_pred chhhhccccccccccccccccEEEEEEEEEEE---------EEEEEeeccCC----CceEEeCccCHHHHHHHhhcchhh Confidence 00111111211000 00011111111 111111100 0000 Q ss_pred C-------cceEEcC----------CCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccce Q lcl|Aclame:pro 240 Q-------EKTYIQG----------LSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRT 302 (517) Q Consensus 240 ~-------~~~~~~g----------~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~ 302 (517) . ...+++| ++.--|-++|.-..-....+.|+| .+.++++.++.+|...|+..+.+ +..+ T Consensus 298 ~~~~~~rv~~~~~~g~~~L~~~~~p~p~~~fp~vp~~g~~~~~~g~~~G--~vr~~~d~Qr~~N~~~s~~~~~l--~~~~ 373 (714) T protein:vir:32 298 KVGRVSRIREAWFVGPHFIVDRPCSAPQGMFPLVPFWGYRKDKTGEPYG--LISRAIPAQDEVNFRRIKLTWLL--QAKR 373 (714) T ss_pred hccccceEEEEEEecCcccccCCCCCCCCceeEEEEeeeeeeccCceee--hhhhchhHHHHHHHHHHHHHHhh--cCCc Confidence 0 0011111 000012222111111112234554 57889999999999999998866 3444 Q ss_pred eecchHHhccCCCCcccccCccCCcccceeeeec--CCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCcccccc Q lcl|Aclame:pro 303 VFVSDVMLRTVPDESGMPPPQVFDPDVNVYKSIR--MGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSF 380 (517) Q Consensus 303 i~v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~--~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~ 380 (517) +++.+..+..... .-......++.. -.|.+.. +......++..++.--..++++.++.....|...+|++...+|. T Consensus 374 ~~~~~~a~~~~d~-~~~e~~arp~~v-i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~llq~~~~~i~~~tGv~~~~lG~ 451 (714) T protein:vir:32 374 VIMDEDATQLSDN-DLMEQIERPDGI-IKLNPVRKNQKSVADVFRVEQDFQVASQQFQVMQESEKLIQDTMGVYSAFLGQ 451 (714) T ss_pred eeeecCcccccHH-HHHHhccCCCCc-eeecccccccCCCCccccccCCCCccHHHHHHHHHHHHHHHHhhCCChHHcCC Confidence 5554333211100 000000001100 0111111 11112234444433335678888888888899999999999886 Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-h---ccCCC---C------------------- Q lcl|Aclame:pro 381 DGRSMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTY-K---LFGGE---I------------------- 434 (517) Q Consensus 381 ~~~~~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~-~---~~~~~---~------------------- 434 (517) .+. ..++..|.++..............++.+++.+-+.+|.+...+ + .+... . T Consensus 452 ~~n-a~SGvAi~~rq~qg~~~l~~~~Dnl~~~~~~~g~~lL~li~~~~~~erv~RI~~e~~~~~~~~~v~in~~~~~~~~ 530 (714) T protein:vir:32 452 DSG-ATSGVAISNLVEQGATTLAEINDNYQFACQQVGRLLLAYLLDDLKKRRNHAVVINRDDRQRRQTIVLNAEGDNGEL 530 (714) T ss_pred Ccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEeccCCCcCcceEEeeccccCccee Confidence 543 3345556666655555556667777777777777776654321 1 11000 0 Q ss_pred -----CCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCCHH------HHHHhhCCCCHHHHHHHHHHHHHhccccCCCC Q lcl|Aclame:pro 435 -----PSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTV------EAIQRIFKVPKKTAEQWLEEIRKDQIELDPVT 503 (517) Q Consensus 435 -----~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~------~~l~~~~~~~eeea~~el~~i~~E~~~~~~~~ 503 (517) ...++|+|+=..+.+.-.++.++.++++..+ +++. ..+.++-++.. +++.+++|++-+...++.. T Consensus 531 ~nDi~~~~~Dv~i~~~p~~~t~r~~~~~~l~~l~~~--~~p~~~~~~~~~~l~~~d~p~--~~el~~~ir~~~~~~~~~~ 606 (714) T protein:vir:32 531 TNDISRLNTHIALAPVQQTPAFKAQLAQRMSEVIQG--LPPQVQAVVLDLWVNLLDVPQ--KQEFVERIRAALGTPKSPD 606 (714) T ss_pred cccceeeeEEEEEeeccCchHHHHHHHHHHHHHHhh--cCchhhhhHHHHHHHhcCCCC--HHHHHHHHHHHcCCCCCcc Confidence 0122344443333333345666666666643 3332 12334445532 4556777766443332211 Q ss_pred CccccCCCCCCCCC Q lcl|Aclame:pro 504 ISQRAQKRMFGDEE 517 (517) Q Consensus 504 ~~~~~~~~~~G~ee 517 (517) ..+ -+++ T Consensus 607 ~~~-------~e~q 613 (714) T protein:vir:32 607 EMT-------PEEQ 613 (714) T ss_pred ccc-------hhhH Confidence 111 0111 No 96 >protein:vir:10117 Length: 714 # NCBI annotation: hypothetical protein # Family: family:all:487 # MgeID: mge:180 # MgeName: Stx2 converting bacteriophage II # Cross-refs: genbank:acc:NP_859247;genbank:gi:32171003;genbank:GeneID:2653343 Probab=99.19 E-value=7.3e-10 Score=70.68 Aligned_cols=471 Identities=11% Similarity=0.082 Sum_probs=225.3 Q ss_pred CchHHHH-----HHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcc---cccccccCccccccccc Q lcl|Aclame:pro 1 MKVIQRI-----KNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQ---VEYINSQGKIQERDYMT 72 (517) Q Consensus 1 m~~~~~i-----k~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~---~~~~~~~~~~~~~~~~~ 72 (517) +.|-.++ .++.++...++.. ++.-.++.+....+..+||.|.... +..... ..+...+ T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~R~~a~~d~~fy~G~Qw~~~~~~~l~~----~g~p~~~ 71 (714) T protein:vir:10 6 NTMATKNDNGATPRFSQRQLQALCS----------DIDSQPKWRDAANKACAYYDGDQLPPEVLQVLKD----RGQPMTI 71 (714) T ss_pred ccccCCCCcchhHHHHHHHHHHHHH----------HHHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHh----cCCCcEE Confidence 2222221 1122211111110 0111233445556667899997532 111111 2234577 Q ss_pred cChHHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe--- Q lcl|Aclame:pro 73 LNLRKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD--- 149 (517) Q Consensus 73 ln~~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d--- 149 (517) .|+-+.++......--.-.+.+.|.-..-+.......+.++..+..+.+.+++.....++..+++..|-||+..+++ T Consensus 72 ~N~i~~~v~~v~g~~~~nr~~~~v~p~~~~~~~~~~Ae~l~~~~~~~~~~~~~~~~~s~af~~~~~~G~G~~~~~~~~d~ 151 (714) T protein:vir:10 72 HNLIAPTVDGVLGMEAKTRTDLVVMSDEPDDETEKLAEAINAEFADACRLGNMNKARSDAYAEQIKAGLSWVEVRRNSDP 151 (714) T ss_pred eccHHHHHHHHHhHHHhCCcceEEecCCCCchhHHHHHHHHHHHHHHHHhhchhHHHHHHHHHhhhcCcceEEeccccCC Confidence 89888899888888877788888853221222223556677788888888899999999999999999999999987 Q ss_pred -CCeeEEEEEcCCeEEEEEEcC--CceEEEEEEEEEEEEe--------cC------------------------------ Q lcl|Aclame:pro 150 -NGEIEFSWALANAFYPLRSNS--NGISEGVMKSVTTKVI--------GN------------------------------ 188 (517) Q Consensus 150 -~g~~~i~~v~a~~~~P~~~~~--~~~~~~a~~~~~~~~~--------~~------------------------------ 188 (517) ++.++|..|+|..|++ ..++ .....|-++++..... ++ T Consensus 152 ~~~~i~i~~v~p~~v~~-Dp~a~~~D~sDar~~~~~~~~~~~~~~~~fP~~a~~i~~~~~~~~~~~d~~~~~~~~~~~~~ 230 (714) T protein:vir:10 152 FGPEFKVSTVSRNEVFW-DWLSREADLSDCRWLMRRRWMDTDEAKATFPGMAQVIDYAIDDWRGFVDTTVTEGQPSPLMS 230 (714) T ss_pred CCCCeEEEecchhheee-ccccccCChhhccceeeeecCCHHHHHHhcCCchhhhhhhhhhhcccccccccccccccccc Confidence 3578999999999885 1111 1123333333222111 00 Q ss_pred ------------------CcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccc-----------cCCC Q lcl|Aclame:pro 189 ------------------KTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEEL-----------YEGM 239 (517) Q Consensus 189 ------------------~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~-----------~~~l 239 (517) ..+..+..|++... .+...++...+ |..+..... ...+ T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~rv~v~E~w~k~---------~~~~~~~~~~~----g~~~~~d~~~~~~~~~~~~g~~~~ 297 (714) T protein:vir:10 231 AWEEYQSWDRQQNEWLQRERRRVLLQVVYYRT---------FERLPVIELSN----GRVVAFDKNNLMQAVAVASGRVQV 297 (714) T ss_pred chhhhccccccccccccccccEEEEEEEEEEE---------EEEEEeeccCC----CceEEeCccCHHHHHHHhhcchhh Confidence 00111111211000 00011111111 111111100 0000 Q ss_pred C-------cceEEcC----------CCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccce Q lcl|Aclame:pro 240 Q-------EKTYIQG----------LSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRT 302 (517) Q Consensus 240 ~-------~~~~~~g----------~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~ 302 (517) . ...+++| ++.--|-++|.-..-....+.|+| .+.++++.++.+|...|+..+.+ +..+ T Consensus 298 ~~~~~~rv~~~~~~g~~~L~~~~~p~p~~~fp~vp~~g~~~~~~g~~~G--~vr~~~d~Qr~~N~~~s~~~~~l--~~~~ 373 (714) T protein:vir:10 298 KVGRVSRIREAWFVGPHFIVDRPCSAPQGMFPLVPFWGYRKDKTGEPYG--LISRAIPAQDEVNFRRIKLTWLL--QAKR 373 (714) T ss_pred hccccceEEEEEEecCcccccCCCCCCCCceeEEEEeeeeeeccCceee--hhhhchhHHHHHHHHHHHHHHhh--cCCc Confidence 0 0011111 000012222111111112234554 57889999999999999998866 3444 Q ss_pred eecchHHhccCCCCcccccCccCCcccceeeeec--CCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCcccccc Q lcl|Aclame:pro 303 VFVSDVMLRTVPDESGMPPPQVFDPDVNVYKSIR--MGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSF 380 (517) Q Consensus 303 i~v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~--~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~ 380 (517) +++.+..+..... .-......++.. -.|.+.. +......++..++.--..++++.++.....|...+|++...+|. T Consensus 374 ~~~~~~a~~~~d~-~~~e~~arp~~v-i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~llq~~~~~i~~~tGv~~~~lG~ 451 (714) T protein:vir:10 374 VIMDEDATQLSDN-DLMEQIERPDGI-IKLNPVRKNQKSVADVFRVEQDFQVASQQFQVMQESEKLIQDTMGVYSAFLGQ 451 (714) T ss_pred eeeecCcccccHH-HHHHhccCCCCc-eeecccccccCCCCccccccCCCCccHHHHHHHHHHHHHHHHhhCCChHHcCC Confidence 5554333211100 000000001100 0111111 11112234444433335678888888888899999999999886 Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-h---ccCCC---C------------------- Q lcl|Aclame:pro 381 DGRSMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTY-K---LFGGE---I------------------- 434 (517) Q Consensus 381 ~~~~~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~-~---~~~~~---~------------------- 434 (517) .+. ..++..|.++..............++.+++.+-+.+|.+...+ + .+... . T Consensus 452 ~~n-a~SGvAi~~rq~qg~~~l~~~~Dnl~~~~~~~g~~lL~li~~~~~~erv~RI~~e~~~~~~~~~v~in~~~~~~~~ 530 (714) T protein:vir:10 452 DSG-ATSGVAISNLVEQGATTLAEINDNYQFACQQVGRLLLAYLLDDLKKRRNHAVVINRDDRQRRQTIVLNAEGDNGEL 530 (714) T ss_pred Ccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEeccCCCcCcceEEeeccccCccee Confidence 543 3345556666655555556667777777777777776654321 1 11000 0 Q ss_pred -----CCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCCHH------HHHHhhCCCCHHHHHHHHHHHHHhccccCCCC Q lcl|Aclame:pro 435 -----PSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTV------EAIQRIFKVPKKTAEQWLEEIRKDQIELDPVT 503 (517) Q Consensus 435 -----~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~------~~l~~~~~~~eeea~~el~~i~~E~~~~~~~~ 503 (517) ...++|+|+=..+.+.-.++.++.++++..+ +++. ..+.++-++.. +++.+++|++-+...++.. T Consensus 531 ~nDi~~~~~Dv~i~~~p~~~t~r~~~~~~l~~l~~~--~~p~~~~~~~~~~l~~~d~p~--~~el~~~ir~~~~~~~~~~ 606 (714) T protein:vir:10 531 TNDISRLNTHIALAPVQQTPAFKAQLAQRMSEVIQG--LPPQVQAVVLDLWVNLLDVPQ--KQEFVERIRAALGTPKSPD 606 (714) T ss_pred cccceeeeEEEEEeeccCchHHHHHHHHHHHHHHhh--cCchhhhhHHHHHHHhcCCCC--HHHHHHHHHHHcCCCCCcc Confidence 0122344443333333345666666666643 3332 12334445532 4556777766443332211 Q ss_pred CccccCCCCCCCCC Q lcl|Aclame:pro 504 ISQRAQKRMFGDEE 517 (517) Q Consensus 504 ~~~~~~~~~~G~ee 517 (517) ..+ -+++ T Consensus 607 ~~~-------~e~q 613 (714) T protein:vir:10 607 EMT-------PEEQ 613 (714) T ss_pred ccc-------hhhH Confidence 111 0111 No 97 >protein:vir:9950 Length: 714 # NCBI annotation: hypothetical protein # Family: family:all:487 # MgeID: mge:179 # MgeName: Stx1 converting bacteriophage # Cross-refs: genbank:acc:NP_859080;genbank:gi:32170835;genbank:GeneID:2653184 Probab=99.19 E-value=7.3e-10 Score=70.68 Aligned_cols=471 Identities=11% Similarity=0.082 Sum_probs=225.3 Q ss_pred CchHHHH-----HHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcc---cccccccCccccccccc Q lcl|Aclame:pro 1 MKVIQRI-----KNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQ---VEYINSQGKIQERDYMT 72 (517) Q Consensus 1 m~~~~~i-----k~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~---~~~~~~~~~~~~~~~~~ 72 (517) +.|-.++ .++.++...++.. ++.-.++.+....+..+||.|.... +..... ..+...+ T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~R~~a~~d~~fy~G~Qw~~~~~~~l~~----~g~p~~~ 71 (714) T protein:vir:99 6 NTMATKNDNGATPRFSQRQLQALCS----------DIDSQPKWRDAANKACAYYDGDQLPPEVLQVLKD----RGQPMTI 71 (714) T ss_pred ccccCCCCcchhHHHHHHHHHHHHH----------HHHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHh----cCCCcEE Confidence 2222221 1122211111110 0111233445556667899997532 111111 2234577 Q ss_pred cChHHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe--- Q lcl|Aclame:pro 73 LNLRKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD--- 149 (517) Q Consensus 73 ln~~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d--- 149 (517) .|+-+.++......--.-.+.+.|.-..-+.......+.++..+..+.+.+++.....++..+++..|-||+..+++ T Consensus 72 ~N~i~~~v~~v~g~~~~nr~~~~v~p~~~~~~~~~~Ae~l~~~~~~~~~~~~~~~~~s~af~~~~~~G~G~~~~~~~~d~ 151 (714) T protein:vir:99 72 HNLIAPTVDGVLGMEAKTRTDLVVMSDEPDDETEKLAEAINAEFADACRLGNMNKARSDAYAEQIKAGLSWVEVRRNSDP 151 (714) T ss_pred eccHHHHHHHHHhHHHhCCcceEEecCCCCchhHHHHHHHHHHHHHHHHhhchhHHHHHHHHHhhhcCcceEEeccccCC Confidence 89888899888888877788888853221222223556677788888888899999999999999999999999987 Q ss_pred -CCeeEEEEEcCCeEEEEEEcC--CceEEEEEEEEEEEEe--------cC------------------------------ Q lcl|Aclame:pro 150 -NGEIEFSWALANAFYPLRSNS--NGISEGVMKSVTTKVI--------GN------------------------------ 188 (517) Q Consensus 150 -~g~~~i~~v~a~~~~P~~~~~--~~~~~~a~~~~~~~~~--------~~------------------------------ 188 (517) ++.++|..|+|..|++ ..++ .....|-++++..... ++ T Consensus 152 ~~~~i~i~~v~p~~v~~-Dp~a~~~D~sDar~~~~~~~~~~~~~~~~fP~~a~~i~~~~~~~~~~~d~~~~~~~~~~~~~ 230 (714) T protein:vir:99 152 FGPEFKVSTVSRNEVFW-DWLSREADLSDCRWLMRRRWMDTDEAKATFPGMAQVIDYAIDDWRGFVDTTVTEGQPSPLMS 230 (714) T ss_pred CCCCeEEEecchhheee-ccccccCChhhccceeeeecCCHHHHHHhcCCchhhhhhhhhhhcccccccccccccccccc Confidence 3578999999999885 1111 1123333333222111 00 Q ss_pred ------------------CcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccc-----------cCCC Q lcl|Aclame:pro 189 ------------------KTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEEL-----------YEGM 239 (517) Q Consensus 189 ------------------~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~-----------~~~l 239 (517) ..+..+..|++... .+...++...+ |..+..... ...+ T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~rv~v~E~w~k~---------~~~~~~~~~~~----g~~~~~d~~~~~~~~~~~~g~~~~ 297 (714) T protein:vir:99 231 AWEEYQSWDRQQNEWLQRERRRVLLQVVYYRT---------FERLPVIELSN----GRVVAFDKNNLMQAVAVASGRVQV 297 (714) T ss_pred chhhhccccccccccccccccEEEEEEEEEEE---------EEEEEeeccCC----CceEEeCccCHHHHHHHhhcchhh Confidence 00111111211000 00011111111 111111100 0000 Q ss_pred C-------cceEEcC----------CCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccce Q lcl|Aclame:pro 240 Q-------EKTYIQG----------LSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRT 302 (517) Q Consensus 240 ~-------~~~~~~g----------~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~ 302 (517) . ...+++| ++.--|-++|.-..-....+.|+| .+.++++.++.+|...|+..+.+ +..+ T Consensus 298 ~~~~~~rv~~~~~~g~~~L~~~~~p~p~~~fp~vp~~g~~~~~~g~~~G--~vr~~~d~Qr~~N~~~s~~~~~l--~~~~ 373 (714) T protein:vir:99 298 KVGRVSRIREAWFVGPHFIVDRPCSAPQGMFPLVPFWGYRKDKTGEPYG--LISRAIPAQDEVNFRRIKLTWLL--QAKR 373 (714) T ss_pred hccccceEEEEEEecCcccccCCCCCCCCceeEEEEeeeeeeccCceee--hhhhchhHHHHHHHHHHHHHHhh--cCCc Confidence 0 0011111 000012222111111112234554 57889999999999999998866 3444 Q ss_pred eecchHHhccCCCCcccccCccCCcccceeeeec--CCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCcccccc Q lcl|Aclame:pro 303 VFVSDVMLRTVPDESGMPPPQVFDPDVNVYKSIR--MGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSF 380 (517) Q Consensus 303 i~v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~--~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~ 380 (517) +++.+..+..... .-......++.. -.|.+.. +......++..++.--..++++.++.....|...+|++...+|. T Consensus 374 ~~~~~~a~~~~d~-~~~e~~arp~~v-i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~llq~~~~~i~~~tGv~~~~lG~ 451 (714) T protein:vir:99 374 VIMDEDATQLSDN-DLMEQIERPDGI-IKLNPVRKNQKSVADVFRVEQDFQVASQQFQVMQESEKLIQDTMGVYSAFLGQ 451 (714) T ss_pred eeeecCcccccHH-HHHHhccCCCCc-eeecccccccCCCCccccccCCCCccHHHHHHHHHHHHHHHHhhCCChHHcCC Confidence 5554333211100 000000001100 0111111 11112234444433335678888888888899999999999886 Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-h---ccCCC---C------------------- Q lcl|Aclame:pro 381 DGRSMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTY-K---LFGGE---I------------------- 434 (517) Q Consensus 381 ~~~~~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~-~---~~~~~---~------------------- 434 (517) .+. ..++..|.++..............++.+++.+-+.+|.+...+ + .+... . T Consensus 452 ~~n-a~SGvAi~~rq~qg~~~l~~~~Dnl~~~~~~~g~~lL~li~~~~~~erv~RI~~e~~~~~~~~~v~in~~~~~~~~ 530 (714) T protein:vir:99 452 DSG-ATSGVAISNLVEQGATTLAEINDNYQFACQQVGRLLLAYLLDDLKKRRNHAVVINRDDRQRRQTIVLNAEGDNGEL 530 (714) T ss_pred Ccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEeccCCCcCcceEEeeccccCccee Confidence 543 3345556666655555556667777777777777776654321 1 11000 0 Q ss_pred -----CCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCCHH------HHHHhhCCCCHHHHHHHHHHHHHhccccCCCC Q lcl|Aclame:pro 435 -----PSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTV------EAIQRIFKVPKKTAEQWLEEIRKDQIELDPVT 503 (517) Q Consensus 435 -----~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~------~~l~~~~~~~eeea~~el~~i~~E~~~~~~~~ 503 (517) ...++|+|+=..+.+.-.++.++.++++..+ +++. ..+.++-++.. +++.+++|++-+...++.. T Consensus 531 ~nDi~~~~~Dv~i~~~p~~~t~r~~~~~~l~~l~~~--~~p~~~~~~~~~~l~~~d~p~--~~el~~~ir~~~~~~~~~~ 606 (714) T protein:vir:99 531 TNDISRLNTHIALAPVQQTPAFKAQLAQRMSEVIQG--LPPQVQAVVLDLWVNLLDVPQ--KQEFVERIRAALGTPKSPD 606 (714) T ss_pred cccceeeeEEEEEeeccCchHHHHHHHHHHHHHHhh--cCchhhhhHHHHHHHhcCCCC--HHHHHHHHHHHcCCCCCcc Confidence 0122344443333333345666666666643 3332 12334445532 4556777766443332211 Q ss_pred CccccCCCCCCCCC Q lcl|Aclame:pro 504 ISQRAQKRMFGDEE 517 (517) Q Consensus 504 ~~~~~~~~~~G~ee 517 (517) ..+ -+++ T Consensus 607 ~~~-------~e~q 613 (714) T protein:vir:99 607 EMT-------PEEQ 613 (714) T ss_pred ccc-------hhhH Confidence 111 0111 No 98 >protein:vir:79647 Length: 435 # NCBI annotation: PorT # Family: family:all:297 # MgeID: mge:1872 # MgeName: TLS # Cross-refs: genbank:acc:YP_001285520;genbank:gi:148734503;genbank:GeneID:5220005 Probab=99.19 E-value=5.3e-11 Score=76.92 Aligned_cols=405 Identities=13% Similarity=0.090 Sum_probs=181.5 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHH-----HHHHhcCCCcccccccccCccccccccccCh Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIER-----NLRQYEGDYPQVEYINSQGKIQERDYMTLNL 75 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~-----~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~ 75 (517) ||+|.+=|.- .+.+.+.+.+.+.- -..+|.+.. +.+. .-..-..+-.+ T Consensus 1 ~~~~m~~~~~--------------------~~~~~D~~~~~~~~~~g~~~~~~~~~~~--~~~~-----~l~~~Y~~~~l 53 (435) T protein:vir:79 1 MGVFMSDKVK--------------------AITKEDGYNEIFGSKDGTFRPNAFYMQR--AAFK-----ALSQFYEEDGM 53 (435) T ss_pred CCcccccccc--------------------cchhhcchhhhhcccccccccCcccCCc--CCHH-----HHHHHHhcCch Confidence 8888543320 01111111111100 001111111 0000 00111234478 Q ss_pred HHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeCCeeEE Q lcl|Aclame:pro 76 RKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDNGEIEF 155 (517) Q Consensus 76 ~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~g~~~i 155 (517) +++||+..|+.++.+...|. +... . +.+...++.-++...+.+++..+-.+|++++-+-..+++.. T Consensus 54 ~~~~Vd~~aed~~r~g~~i~--g~~~-------~----~~~~~~~~~l~~~~~l~~a~~~~rl~G~~~i~i~~~d~~~~- 119 (435) T protein:vir:79 54 ARRIVDVIPEEMVTPGFKVD--GVKN-------E----KSFKSRWDELRLNAKIIDALSWSRLFGGSAILAVVADNKML- 119 (435) T ss_pred hhhhhccchHHhhcCCceec--CCCh-------H----HHHHHHHHHhhHHHHHHHHHHhhhccccEEEEEEecCCCCc- Confidence 89999999999998776653 2111 1 12333333346788999999999999998887766433211 Q ss_pred EEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEe-eccee-eccceEEEEEEEeecCCccccCcccccc Q lcl|Aclame:pro 156 SWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHE-WEKTE-EGESLYVITNELYKSDNEGEIGKRIPLE 233 (517) Q Consensus 156 ~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~-~~~~~-~~~~~y~I~n~ly~~~~~~~lG~~v~l~ 233 (517) + -|+.. ++....+.+...... +-.++.. +-.-. .....|+|. +....-+..| T Consensus 120 -----~--~Pl~~--~g~i~~i~v~d~~~i--------~~~~~~~dp~sp~fg~P~~y~v~------~~~~~~~~~i--- 173 (435) T protein:vir:79 120 -----K--SPVKP--GAQLEDIRVYDRYQI--------TIHERETNARSVRYGEPKLYKIS------PGGDIPEFFV--- 173 (435) T ss_pred -----c--ccccc--CCceeeEEeechhhc--------cchhhccCCcccccCcceEEEEe------cCCCCCceEE--- Confidence 1 13311 121111111000000 0000000 00000 000112221 0000001111 Q ss_pred cccCCCCcceEEcCCCcceEEEecCCccccc-cCCCCCCcchh-hhhHHHHHHHHHHHHHHHHHHHhccceeecchHHhc Q lcl|Aclame:pro 234 ELYEGMQEKTYIQGLSRPLFNYLKPSGFNNI-NPHSPLGLGIT-DNSVSTLKKINDTYDQFWWEIKMGQRTVFVSDVMLR 311 (517) Q Consensus 234 ~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~-~~~splG~S~~-~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~l~ 311 (517) |+..+ +.+.|. +.|+.. ...+++|.|++ ..+.+.+..++.+......-+...+.+++--..+-. T Consensus 174 -H~SRl---i~~~g~----------~~p~~~~~~~~~~G~S~l~e~~~~~l~~~~~~~~~~~~l~~~~~~~v~~~~~l~~ 239 (435) T protein:vir:79 174 -HYSRI---CIIDGE----------RVSNEKRRQNDGWGASILNKRLIEAIVDYNYCQELATQLLRRKQQAVWKARDLAL 239 (435) T ss_pred -cceeE---EEecCC----------cchhhhccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchhHHH Confidence 11000 122222 122221 22567899998 678899999998888887776444444432222211 Q ss_pred cCCCCcccccC----ccCCcccceeeeecCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCcccc-ccCCCcc- Q lcl|Aclame:pro 312 TVPDESGMPPP----QVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTF-SFDGRSM- 385 (517) Q Consensus 312 ~~~~~~~~~~~----~~fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~-~~~~~~~- 385 (517) ...++.+.... ..+.........+-.+..+..+++++.++ ......++.+.+.|+..+|++...+ |...+|. T Consensus 240 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~i~~~~e~~e~~~~~l--sgl~~~~~~~~~~iaaa~~IP~t~L~G~s~~gln 317 (435) T protein:vir:79 240 MCDDEEGRYAARLRLAQVDDESGVGKAIGIDATDEEYEVLNSDV--SGVPEFLQEKIDRIVALTGIHEIIIKNKNTGGVS 317 (435) T ss_pred hhcCccchHHHHHHHHHHHHhcCCCCceeEecCCcceEEEeccc--CCHHHHHHHHHHHHHhhhCCCeeeeccCCccccc Confidence 11111111000 00111111122222223334576666544 4556677888889999999987664 3332333 Q ss_pred chHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHH---- Q lcl|Aclame:pro 386 KTATEIVSENDLTYRTRNDHV-YEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYG---- 460 (517) Q Consensus 386 ~TAtei~a~~~~~~~t~~~~~-~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~---- 460 (517) .|..+-... .+..++.+| ..++..|+.|+..++. ..+++|.|++-...++.+.++... T Consensus 318 stgd~d~~~---yyd~i~~~Qe~~l~p~l~~l~~li~~--------------s~d~~~~f~pL~~~sekEkAei~~~~a~ 380 (435) T protein:vir:79 318 ASQNTALET---FYKLIDRKRVEDYKPILEFLLPFMIS--------------ETEWSIEFEPLSVPSDKDKAEIMAKNVE 380 (435) T ss_pred cchhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhc--------------CCCCeEEeCCCCCCCHHHHHHHHHHHHH Confidence 333344333 444444443 5677888887776542 146899999988888876655433 Q ss_pred ---HHHhcCCCCHHHHHHhhCCCCHHHHHHHHHHHHHhc------cccCCCC-CccccCCCCCCCCC Q lcl|Aclame:pro 461 ---QAKTFGFIPTVEAIQRIFKVPKKTAEQWLEEIRKDQ------IELDPVT-ISQRAQKRMFGDEE 517 (517) Q Consensus 461 ---~~~~~G~~S~~~~l~~~~~~~eeea~~el~~i~~E~------~~~~~~~-~~~~~~~~~~G~ee 517 (517) +++.+|+++..+ +.+++..+-.+. ...-|.. +........+||+| T Consensus 381 a~~~~~~~g~i~~~e------------~r~~L~~~~~~~~~~~~~~~~~~~~~d~~~~~~~e~g~~~ 435 (435) T protein:vir:79 381 SVVKLKAEQAINLKE------------TRDTLRSICPDLKIMDNDNIELPEPEDLDPEPGQEGGLNK 435 (435) T ss_pred HHHHHHhcCCCCHHH------------HHHHHHHhccccCCCCcccccCCccccCCCCCCCCCCCCC Confidence 334455555544 433332211110 0011111 12222344556666 No 99 >protein:vir:96738 Length: 505 # NCBI annotation: putative phage-related protein # Family: family:all:47 # MgeID: mge:1628 # MgeName: VP882 # Cross-refs: genbank:acc:YP_001039817;genbank:gi:126010916;genbank:GeneID:5076248 Probab=99.17 E-value=9.1e-10 Score=70.14 Aligned_cols=438 Identities=12% Similarity=0.066 Sum_probs=201.7 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCc------cc-ccccc--cCc------- Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYP------QV-EYINS--QGK------- 64 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~------~~-~~~~~--~~~------- 64 (517) |+++++.-.+.-.- ....-....+-|.+--. |. ..-.. +.. T Consensus 8 ~~~~dr~i~~~~~~-----------------------~~~~~~~~~~~y~aa~~~r~~~~w~~~~~~~s~~~~i~~~~~~ 64 (505) T protein:vir:96 8 PSLAQRMVNWAWYR-----------------------YVEPQKNAARAFEAARRDRLGKAWLRRASRLSADEEIYADLAS 64 (505) T ss_pred cchhhcccchhhhh-----------------------hHHHHHHhhhhcccccCCCccccccCCCCCCChHHHHHHHHHH Confidence 66665554432110 00011112223332111 00 00000 000 Q ss_pred cccc---cccccChHHHHHHHHhhhhcCC-cceeEec-CcccccccccchhHHHHHHHHHHhh--------hhHHHHHHH Q lcl|Aclame:pro 65 IQER---DYMTLNLRKLSADVLSGLVFNE-QCEVYVS-DAKDEEKKDNSFKTAHEFIQHVFQH--------NKFIKNLSD 131 (517) Q Consensus 65 ~~~~---~~~~ln~~~~i~~~~A~ll~~e-~~~i~~~-~~~~~~~~~~~~~~~~~~l~~~l~~--------n~f~~~~~~ 131 (517) ...| -....++++.+.+.+.+.+++. -..+... .......+.+..+..+..+....+. .+|...... T Consensus 65 lr~RaRdL~rNn~~a~~av~~~~~nvVG~~Gi~~~~~~~~~~~~~~~~~~~~ie~~w~~Wa~~~~~D~~g~~~f~~lq~l 144 (505) T protein:vir:96 65 LVQRAREQSINNPYAKRFYQLLKNNVIGPKGMTFQSRVKRRNGKPDDRANTLIEGNWQQWIKKGNCDVTGRYHFVTLLHL 144 (505) T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHhcCCCcceeeecCCcccccccHHHHHHHHHHHHHhcCCcCcceeccCCHHHHHHH Confidence 0000 0012367788889999999984 3322221 1111111222223333333433321 237777777 Q ss_pred HHHHHHhhCCEEEEEEEeCCe---eEEEEEcCCeEE-EEE---EcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecce Q lcl|Aclame:pro 132 YLEPTFALGGLTVRPYVDNGE---IEFSWALANAFY-PLR---SNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKT 204 (517) Q Consensus 132 ~~~~a~~~G~~~~k~~~d~g~---~~i~~v~a~~~~-P~~---~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~ 204 (517) ++...+..|.++++..+..+. +++..++|+.+- |.. .+.+.+..+|-+ ... +...-|..+..| ++ T Consensus 145 ~~r~~~~dGE~f~~~~~~~~~~~~~~lqliepd~l~~~~n~~~~~~~~i~~GIe~----d~~-Gr~~aY~i~~~h-Pg-- 216 (505) T protein:vir:96 145 WMETLARDGEVLVREHRGYPNKWGYALQILECDRLDLNYNADLQNGNRIRMSIEL----DAW-ERPVAYHLLVNH-PG-- 216 (505) T ss_pred HHHHHhhCCceEEEEeecCCCCcceEEEEechhhcCCCCCcccCCcCeEEeceEE----CCC-CceEEEEEeecC-CC-- Confidence 888889999998888776553 689999999853 211 112223344321 111 112223222333 11 Q ss_pred eeccceEEEEEEEeecCCccccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHH Q lcl|Aclame:pro 205 EEGESLYVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKK 284 (517) Q Consensus 205 ~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~ 284 (517) +.... +.... ....-++.+-+.|+. ....++...|+|.|+.++..+.. T Consensus 217 -------------------d~~~~-------~~~~~--~~~~rvpa~~vlH~f----~~~r~gQ~RGis~lapvl~~l~~ 264 (505) T protein:vir:96 217 -------------------DNSYC-------YHYAG--QTYERVPADEIIHTF----VPWRPHQNRGIPWTHASMVELHH 264 (505) T ss_pred -------------------ccccc-------ccccc--ccccccCHhHhhhhh----cccCCccccCcchHHHHHHHHHH Confidence 00000 00000 000111222233332 22345677899999999999999 Q ss_pred HHHHHHHHHHHHH-hccceeecchHHhccCCCCcccccCccCCcccceeeeec---C--CCCCCcceEEecccChHHHHH Q lcl|Aclame:pro 285 INDTYDQFWWEIK-MGQRTVFVSDVMLRTVPDESGMPPPQVFDPDVNVYKSIR---M--GTDEEFVKDVTHDIRTEQYKE 358 (517) Q Consensus 285 lD~~~s~~~~e~~-~~~~~i~v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~---~--~~~~~~v~~~~~dir~e~~~~ 358 (517) ++.-.+.-..--+ .+--..|| +++.+..+... .+.+......+. . =..+..++.++|+-+..++.. T Consensus 265 l~~y~dael~~a~i~A~~a~fi-----~~~~~~~~~~~---~~~~~~~~~~l~pG~i~~L~pGe~i~~~~~~~p~~~~~~ 336 (505) T protein:vir:96 265 IGEYRKSEMIAAELGAKKVGFY-----EQDPEAYDQPP---EDDQGEIVEEVEAGTYQLLPYGIRFKEHKIDHPHTNFGA 336 (505) T ss_pred HhHHHHHHHHHHHHhhhheeee-----ecCCccCCCcc---ccccCccccccCCceeeecCCCCeeeeeCCCCCCCCHHH Confidence 9865554433332 22223333 33333222111 111111111111 1 124456888999988888888 Q ss_pred HHHHHHHHHHHHhCCCccccccCCCcc--chHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhccCCCCC Q lcl|Aclame:pro 359 AINQALRTLEMELKLSVGTFSFDGRSM--KTATEIVSENDLTYRTRNDHVYEVEQ-FIKGLVISVLELAKTYKLFGGEIP 435 (517) Q Consensus 359 ~l~~~l~~i~~~~g~s~~~~~~~~~~~--~TAtei~a~~~~~~~t~~~~~~~~~~-al~~li~~il~~~~~~~~~~~~~~ 435 (517) -...+++.|....|+++..++-|-+++ .++-.......+.+. ..|..+.. .++.+.+..+..+-. .+.... T Consensus 337 f~~~~lr~iaaglgi~ye~lt~D~s~~nYSS~R~~~~e~~r~~~---~~q~~~~~~~~~pi~~~~l~~a~l---~G~i~~ 410 (505) T protein:vir:96 337 FVKSSLRGVAAGMGPAYNRLAHDLEGVNFSSLRSGELDERDLYK---LLQFFVVTELLERVAGNLISMSLL---TQALPL 410 (505) T ss_pred HHHHHHHHHHhhcCCCHHHHhcccccccHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH---cCCcCC Confidence 899999999999999999987654322 223333333333333 33333333 333333333332221 121111 Q ss_pred Ccc----ceEEEe--CCCccCCHHHHHHHHHHHHhcCCCCHHHHHHhhCCCCHHHHHHHHH----HHHHhccccCCCCC- Q lcl|Aclame:pro 436 SAE----HIGVDF--DDGVFQDRSALLRFYGQAKTFGFIPTVEAIQRIFKVPKKTAEQWLE----EIRKDQIELDPVTI- 504 (517) Q Consensus 436 ~~~----~v~i~f--~d~i~~d~~~~~~~~~~~~~~G~~S~~~~l~~~~~~~eeea~~el~----~i~~E~~~~~~~~~- 504 (517) +.. -..+.| .--..+|+.++++.....+.+|+.|.++.++.. |.+-++..++++ ++++-.....++.. T Consensus 411 p~~~~~~~~~~~w~~p~~~~iDP~Ke~~a~~~~i~~G~~t~~~~~a~~-G~D~~~v~~q~a~e~~~~~~~Gl~~~~~~~~ 489 (505) T protein:vir:96 411 NMVDIDRLSQYAFQPRGWDWVDPAKDSKAHSESIKNRTRSRSSIIRAA-GDDPEDVFDEIAWEEQLMRDKGVNPTPPEQE 489 (505) T ss_pred CCccchhhceeeeccCCccccChHHHHHHHHHHHHcCCCCHHHHHHHc-CCCHHHHHHHHHHHHHHHHHcCCCCCCCCCC Confidence 111 123444 333446999999999999999999999988775 766555433332 22222211111100 Q ss_pred ----ccccCCCCCCCC Q lcl|Aclame:pro 505 ----SQRAQKRMFGDE 516 (517) Q Consensus 505 ----~~~~~~~~~G~e 516 (517) .....+...+|| T Consensus 490 ~~~~~~~~~~~~~~d~ 505 (505) T protein:vir:96 490 SKDATTDEEDDSASDD 505 (505) T ss_pred CCCCCCCCCCCCCCCC Confidence 011111122233 No 100 >protein:vir:105429 Length: 708 # NCBI annotation: gene 3 protein # Family: family:all:487 # MgeID: mge:1556 # MgeName: Sf6 # Cross-refs: genbank:acc:NP_958179;genbank:gi:41057281;genbank:GeneID:2716676 Probab=99.03 E-value=2.6e-09 Score=67.68 Aligned_cols=476 Identities=8% Similarity=-0.001 Sum_probs=223.9 Q ss_pred hHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhc--CCCccc---ccccccCccccccccccChHH Q lcl|Aclame:pro 3 VIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYE--GDYPQV---EYINSQGKIQERDYMTLNLRK 77 (517) Q Consensus 3 ~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~--g~~~~~---~~~~~~~~~~~~~~~~ln~~~ 77 (517) |=++.++++++...++.. ..+ -..+-+.+..+-.+||. |+...- ......++...+...+.|+-+ T Consensus 1 m~~~~~~~~~~~~~~~~~-----~~~-----~~~~~r~~~~~D~~f~~~~G~QW~~~~~~~l~~~~q~~grP~~~~N~i~ 70 (708) T protein:vir:10 1 MAETLEKKHERIMLRFDR-----AYS-----PQKEVREKCIEATRFARVPGGQWEGATAAGTKLDEQFEKYPKFEINKVA 70 (708) T ss_pred CchhHHHHHHHHHHHHHH-----HHH-----hhHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHhhhhcCCCceEEcchH Confidence 455555555554443321 111 12334444544555664 653211 111122222345567889888 Q ss_pred HHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe-------- Q lcl|Aclame:pro 78 LSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD-------- 149 (517) Q Consensus 78 ~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d-------- 149 (517) .++......--.-.+.+.|.-. ....+.+..+.++..+.-+.+.++......++...++..|-||++++.| T Consensus 71 ~~v~~v~g~~~~nr~d~~v~P~-~~~~d~~~Ae~l~~~~~~~~~~~~~~~~~s~Af~d~i~~G~Gw~~~~~d~~~e~d~~ 149 (708) T protein:vir:10 71 TELNRIIAEYRNNRITVKFRPG-DREASEELANKLNGLFRADYEETDGGEACDNAFDDAATGGFGCFRLTSMLVNEYDPM 149 (708) T ss_pred HHHHHHHHHHHhCCcceEEEcC-CCCchHHHHHHHHHHHHHHHHhcCchHHHHHHHHhhhhcccceeeeeeccccccCCC Confidence 8888888877777888887521 1111234556777777888888899999999999999999999988653 Q ss_pred --CCeeEEEEE--cCCeEE--EEEEcCCceEEEEEEEEEEEE--------ecC-------------------CcEEEEEE Q lcl|Aclame:pro 150 --NGEIEFSWA--LANAFY--PLRSNSNGISEGVMKSVTTKV--------IGN-------------------KTVYYTLL 196 (517) Q Consensus 150 --~g~~~i~~v--~a~~~~--P~~~~~~~~~~~a~~~~~~~~--------~~~-------------------~~~~yt~l 196 (517) +.++.|..+ |...++ |.+... ....|-+++..... .++ +....+.. T Consensus 150 ~~~~~i~i~~~~~p~~~v~~Dp~a~~~-D~sDar~~~~~~~~~~d~~~~~~p~~a~~~~d~~~~~~~~~~~~~~d~v~v~ 228 (708) T protein:vir:10 150 DDRQRIAIEPIYDPSRSVWFDPDAKKY-DKSDALWAFCMYSLSPEKYEAEYGKKPPTSLDVTSMTSWEYNWFGADVIYIA 228 (708) T ss_pred CCccccceEEeecchhhcccCcccccc-ChhhhhhhhhccCCCHHHHHHhCCCCcccccccccCCCccccccCCCceEEE Confidence 123444333 234444 322111 11111111111100 000 00001122 Q ss_pred EEEeecceeeccceEEEEEEEeecCCccccCccccccc-----c-----cCCCCc---------ce---EEcC------C Q lcl|Aclame:pro 197 EFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEE-----L-----YEGMQE---------KT---YIQG------L 248 (517) Q Consensus 197 E~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~-----~-----~~~l~~---------~~---~~~g------~ 248 (517) |+++.... ....-+|.... .|..+.... + ..+... .| .++| - T Consensus 229 ey~~r~~~-------~~~~~~~~~~~---tg~~~~~~~~~~~~~~~~~~~~g~~~~~~r~~~r~~v~~~~~~g~~~le~~ 298 (708) T protein:vir:10 229 KYYEVRKE-------SVDVISYRHPI---TGEIATYDSDQVEDIEDELAIAGFHEVARRSVKRRRVYVSVVDGDGFLEKP 298 (708) T ss_pred EeeeEEEE-------EEEEEEEecCC---CCceeeecchhhhhHHHHHHhcccchhheeeeeeEEEEEEeecchhhhccC Confidence 33221100 00000111100 011111000 0 000000 00 1111 1 Q ss_pred CcceEEEecC-Ccc-cc-ccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhcccee-ecchHHhccCCCCcccccCcc Q lcl|Aclame:pro 249 SRPLFNYLKP-SGF-NN-INPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRTV-FVSDVMLRTVPDESGMPPPQV 324 (517) Q Consensus 249 ~~p~f~~~~~-~~~-N~-~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i-~v~~~~l~~~~~~~~~~~~~~ 324 (517) ...++.+||. |+. .. ...+.|.+-+.+.++++.++.+|...|.+.+.+-.....+ +++...+..... .-.. T Consensus 299 ~~~p~~~fP~vP~~g~r~~~d~~~~~yG~vr~~kd~Q~~~N~~~S~~~~~~a~~~~~~~i~~~~~i~~~~~-----~~~~ 373 (708) T protein:vir:10 299 RRIPGEHIPLIPVYGKRWFIDDIERVEGHIAKAMDPQRLYNLQVSMLADTAAQDPGQIPIVGMEQIRGLEK-----HWEA 373 (708) T ss_pred CCCCCCceeeEEEeeeeeccCCCcccceeecccchhHHHHHHHHHHHHHHHHhcCCcccccChhhhhhHHH-----HHhh Confidence 1112222221 111 11 1234564556689999999999999999999986554444 333333221100 0001 Q ss_pred CCcccceeeeecCCC--------CCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHHHHHHH Q lcl|Aclame:pro 325 FDPDVNVYKSIRMGT--------DEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVSEND 396 (517) Q Consensus 325 fd~~~~~y~~~~~~~--------~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a~~~ 396 (517) ++.+...|...+... .......++|.--..++++.++.....|...+|++...+|-.+ ..++..|.++.. T Consensus 374 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~q~~~~~~~~~~l~q~~~~~i~~vsG~~~~~lG~~s--n~SG~aI~~rq~ 451 (708) T protein:vir:10 374 RNKKRPAFLPLREVRDKSGNIIAGATPAGYTQPAVMNQALAALLQQTSADIQEVTGGSQAMQQMPS--NIAQETVNNLMN 451 (708) T ss_pred ccccchhhhccccccccccccccccCCccccCCccchHHHHHHHHHHHHHHHHHhCcChhHccCcc--chHHHHHHHHHH Confidence 222323333222111 1112334454333456888888888889999999999888433 346677777776 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hccCCCC-----------------------------CCccceEEE Q lcl|Aclame:pro 397 LTYRTRNDHVYEVEQFIKGLVISVLELAKTY----KLFGGEI-----------------------------PSAEHIGVD 443 (517) Q Consensus 397 ~~~~t~~~~~~~~~~al~~li~~il~~~~~~----~~~~~~~-----------------------------~~~~~v~i~ 443 (517) ............++.+.+.+-+.+|.+...+ ..+.... .+.++|.|+ T Consensus 452 qg~~~l~~~~Dnl~~~~~~~g~~lL~li~~~y~~er~~RI~~edg~~~~v~in~~~~d~~~g~~~~~nDi~~g~yDv~i~ 531 (708) T protein:vir:10 452 RADMASFIYLDNMAKSLKRAGEVWLSMAREVYGSEREVRIVNEDGSDDIAVLSAQVVDRQTGAVVALNDLSVGRYDVTVD 531 (708) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEecCCCCcceEEecceeccCCCcceeeeeccceeeEEEEEe Confidence 6666666777777777777777776654421 1110000 012244444 Q ss_pred eCCCccCCHHHHHHHHHHHHhcCC-CCHHH-----HHHhhCCCCHHHHHHHHHHHHHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 444 FDDGVFQDRSALLRFYGQAKTFGF-IPTVE-----AIQRIFKVPKKTAEQWLEEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 444 f~d~i~~d~~~~~~~~~~~~~~G~-~S~~~-----~l~~~~~~~eeea~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) =..+.+.-.++.++.++++..+.. ....+ .+.++-++.- +++.+++|+.......+.... -.+| T Consensus 532 ~~p~~~s~r~~~~~~l~qll~~~~p~~~~~~~~~~~~l~~~D~p~--~~ei~erir~~~~~~~~~~~~--------~~ee 601 (708) T protein:vir:10 532 VGPSYTARRDATVSVLTNVLSSMLPTDPMRPAIQGIILDNIDGEG--LDDFKEYNRNQLLISGIAKPR--------NEKE 601 (708) T ss_pred cccCchhHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCCcC--hHHHHHHHHHhhccccccccc--------chhh Confidence 333444445566777777765432 11111 1222333322 444566665544222111000 0111 No 101 >protein:vir:104338 Length: 422 # NCBI annotation: putative portal protein # Family: family:all:297 # MgeID: mge:1593 # MgeName: RTP # Cross-refs: genbank:acc:YP_398967;genbank:gi:81343951;genbank:GeneID:3778870 Probab=99.02 E-value=2.1e-09 Score=68.14 Aligned_cols=392 Identities=15% Similarity=0.109 Sum_probs=172.1 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccc----cCccccccccccChH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINS----QGKIQERDYMTLNLR 76 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~----~~~~~~~~~~~ln~~ 76 (517) |--.+...+.+. |-.+.-+++.. .......-..+-.++ T Consensus 1 ~~~~D~~~n~~~--------------------------------------gg~~~~~~~~~~~~~~~~~l~a~Y~~~~l~ 42 (422) T protein:vir:10 1 MVKTDSYANIFL--------------------------------------GGSDGSEIYGSLQNQAPTILASLYADNALV 42 (422) T ss_pred CccchhhHHHHc--------------------------------------CCCCCccccCcccccCHHHHHHHHHhChhh Confidence 333333333331 11000000000 000000112344788 Q ss_pred HHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeCCeeEEE Q lcl|Aclame:pro 77 KLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDNGEIEFS 156 (517) Q Consensus 77 ~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~g~~~i~ 156 (517) ++||+..|.-++.+--+|.-++. .++.++.+++ -++...+.+++..+-.+|++++-+-+.+++.. T Consensus 43 ~~~Vd~~aed~~r~g~~i~~~~~---------~~~~~~~~~~----l~~~~~l~~a~~~~rl~G~a~i~i~v~d~~~~-- 107 (422) T protein:vir:10 43 RRIIDTIPETALAAGFHIDGIDD---------EPAFWSRWDD----LEMTQNINDAWSWARLFGGAAIVAIVKDNRAL-- 107 (422) T ss_pred HHHHhhhhHHHhcCCccccCCCH---------HHHHHHHHHH----hhHHHHHHHHHHhhccccceEEEEEecCCCCc-- Confidence 99999999999887666542211 1223334443 36889999999999999999888777433210 Q ss_pred EEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEe-eccee-eccceEEEEEEEeecCCccccCccccccc Q lcl|Aclame:pro 157 WALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHE-WEKTE-EGESLYVITNELYKSDNEGEIGKRIPLEE 234 (517) Q Consensus 157 ~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~-~~~~~-~~~~~y~I~n~ly~~~~~~~lG~~v~l~~ 234 (517) + -|+.. ++...++.+...... +-.+++. +..-. .....|+|. ..+. ..+..| T Consensus 108 ----~--~Pl~~--~g~~~~l~v~d~~~i--------~~~~~~~dp~s~~fg~P~~y~v~-----~~~~-~~~~~i---- 161 (422) T protein:vir:10 108 ----T--SPVRE--GAELETVRVYDRTQV--------KVQTREENPRNARFGEPLTYRIT-----TNES-DMFYDV---- 161 (422) T ss_pred ----c--ccccc--cCceeeEEeeccccc--------cchhcccCccccccCcceEEEEe-----cCCC-Ccceee---- Confidence 0 12211 111111100000000 0000000 00000 000111111 1100 001111 Q ss_pred ccCCCCcceEEcCCCcceEEEecCCccccc-cCCCCCCcchhhh-hHHHHHHHHHHHHHHHHHHHhccceeecchHHhcc Q lcl|Aclame:pro 235 LYEGMQEKTYIQGLSRPLFNYLKPSGFNNI-NPHSPLGLGITDN-SVSTLKKINDTYDQFWWEIKMGQRTVFVSDVMLRT 312 (517) Q Consensus 235 ~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~-~~~splG~S~~~~-~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~l~~ 312 (517) |+..+ +.+.|. +.|+.. .....+|.|++.. +.+.+..++.+-.....-+...+.+++--..+-.- T Consensus 162 H~SRl---i~~~g~----------~~p~~~~~~~~~~G~S~l~~~~~~~i~~~~~~~~~~~~l~~~~~~~v~~~~~l~~~ 228 (422) T protein:vir:10 162 HYSRI---HIIDGE----------RIPNVMRRQNDGWGRSVLSSDILDSIKDYTNCERLATQLLKRKQQAVWKAKGLAEL 228 (422) T ss_pred cccee---EEeCCC----------CchhhhcccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHh Confidence 11110 122222 222222 1244579999986 67989999888777777664444444332221111 Q ss_pred CCCCcccc---c-CccCCcccceeeeecCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCcccc-ccCCCcc-c Q lcl|Aclame:pro 313 VPDESGMP---P-PQVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTF-SFDGRSM-K 386 (517) Q Consensus 313 ~~~~~~~~---~-~~~fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~-~~~~~~~-~ 386 (517) ..++.+.. . ...+.........+-.+..+..+++++.++ ..-...++.+.+.|+..+|++...+ |...+|. . T Consensus 229 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~l~~~~e~~e~~~~~l--sgl~~~~~~~~~~iaaa~~IP~t~L~G~s~~Glna 306 (422) T protein:vir:10 229 CDDSEGFGAARLRLAQVDNNSGVGQAIGIDAESEEYSVLNSDI--GGIDAFLDKKFDRIVALSGIHEIILKNKNVGGVSS 306 (422) T ss_pred cCCccchHHHHHHHHHHHHhcCCccceeEecCCcceEEEeccc--CChHHHHHHHHHHHHhhhCCCeeeeccCCcccccc Confidence 11121110 0 011111111122222223334576666544 3566677888889999999987655 3222233 2 Q ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHH------ Q lcl|Aclame:pro 387 TATEIVSENDLTYRTRNDHV-YEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFY------ 459 (517) Q Consensus 387 TAtei~a~~~~~~~t~~~~~-~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~------ 459 (517) |..+-. +-.+..++.+| ..++.+|+.|+..|++ ..+++|.|+.-...++.+.++.. T Consensus 307 tgd~d~---~~yyd~i~~~Qe~~l~p~l~~l~~~i~~--------------s~~~~~~f~pL~~~sekekaei~~~~a~a 369 (422) T protein:vir:10 307 SQNTAL---ETFHKLVDRKRNAELLPILEFLIPFIVN--------------AEEWSVEFNPLAQESSKDKAEILEKNVNS 369 (422) T ss_pred cchHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcc--------------cCCcEEEeCCCCCCCHHHHHHHHHHHHHH Confidence 333333 34555565555 5688888888887652 13688999988888877655543 Q ss_pred -HHHHhcCCCCHHHHHHhhCCCCHHHHHHHHHHHHHhccccCC--------CCCccccCCCCCCC Q lcl|Aclame:pro 460 -GQAKTFGFIPTVEAIQRIFKVPKKTAEQWLEEIRKDQIELDP--------VTISQRAQKRMFGD 515 (517) Q Consensus 460 -~~~~~~G~~S~~~~l~~~~~~~eeea~~el~~i~~E~~~~~~--------~~~~~~~~~~~~G~ 515 (517) .+++.+|+++..+ +.++|...-.+..-.+. ...+.+|.+..++| T Consensus 370 ~~~~~~~g~i~~~e------------~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 422 (422) T protein:vir:10 370 IAALIAAGAMDIDE------------ARDTLRTIAPEVKINDGSVETEVTISETSNDPLEVPTDD 422 (422) T ss_pred HHHHHhcCCCCHHH------------HHHHhhhhcccccCCCCCCccccchhhcCCCCCCCCCCC Confidence 3344455555544 33333221111000000 00001111111112 No 102 >protein:vir:105619 Length: 772 # NCBI annotation: portal protein # Family: family:all:487 # MgeID: mge:1540 # MgeName: F116 # Cross-refs: genbank:acc:YP_164304;genbank:gi:56692922;genbank:GeneID:3197230 Probab=99.00 E-value=6.1e-09 Score=65.60 Aligned_cols=482 Identities=11% Similarity=0.033 Sum_probs=222.1 Q ss_pred CchHHHHHHHHHHHHH----HhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCccc---ccccccCcccccccccc Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGY----ALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQV---EYINSQGKIQERDYMTL 73 (517) Q Consensus 1 m~~~~~ik~~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~---~~~~~~~~~~~~~~~~l 73 (517) |.+-+.+..-+...-. .+....+..+.. ++.-.++.++...+..+||.|+...- ..... ..+...+. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~q~~~r~~a~~d~~fy~G~QW~~~~~~~l~~----~g~p~~~~ 74 (772) T protein:vir:10 1 MQITENDRQYLNGLPPAGDTPLTVDEYADINY--EIEDQPAWRAVADKEMDYADGNQLDTELLRRQQA----LGIPPAVE 74 (772) T ss_pred CCcchhhHHhhccCCcccccccCHHHHHHHHH--HHhccHHHHHHHHHHHHhhcCCCCCHHHHHHHHh----cCCCcEEE Confidence 5555544443321110 000000111111 11123345555566777999975321 11111 23345778 Q ss_pred ChHHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeC--- Q lcl|Aclame:pro 74 NLRKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDN--- 150 (517) Q Consensus 74 n~~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~--- 150 (517) |+-+.++......--.-.+.+.|.-. ....+.+..+.++..+..+.+.+++.....++...++..|-||+..+++. T Consensus 75 N~i~~~v~~v~g~~~~nr~d~~v~Pr-~~~~d~~~Ae~l~~~~~~~~~~~~~~~~~s~Af~~~i~~G~Gw~e~~~~~d~~ 153 (772) T protein:vir:10 75 DLIGPALLSLQGYEAVTRTDWRVTPN-GDVGGQEVADALNYRLNTAERQSGADRACSEAFRPQIACGIGWVEVSRESDPF 153 (772) T ss_pred cchHHHHHHHHHHHHhcCcceEEecC-CCchHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhhcCceeEEeccccCCC Confidence 99999999888888888888888432 12223455677778888888889999999999999999999999999873 Q ss_pred -CeeEEEEEcCCeEEEEEEcCC-ceEEEEEEEEEEEEe------------------------------------------ Q lcl|Aclame:pro 151 -GEIEFSWALANAFYPLRSNSN-GISEGVMKSVTTKVI------------------------------------------ 186 (517) Q Consensus 151 -g~~~i~~v~a~~~~P~~~~~~-~~~~~a~~~~~~~~~------------------------------------------ 186 (517) +.++|..|++..++. ..+.. ....|=++++..... T Consensus 154 ~~~i~i~~v~p~~v~~-Dp~a~~D~sDar~~~~~~~~~~d~~~~~fp~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (772) T protein:vir:10 154 KFPYRCRPIRRDEIHW-DMKCGDDWEACRFLRRQRWLSPDRIALVFPEHAELIGMVGKYGSTWWGQPDLGMMEGGTSTGL 232 (772) T ss_pred CCCeEEEeeCccccee-cCCCCCCHHHhhhhhhhccCCHHHHHHhCCCchhHHHhhhhhcccccCccccccccccccccc Confidence 468899999999874 12121 122211111100000 Q ss_pred ------------------cCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCccccccc--------ccCCCC Q lcl|Aclame:pro 187 ------------------GNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEE--------LYEGMQ 240 (517) Q Consensus 187 ------------------~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~--------~~~~l~ 240 (517) +...+..+.+|++... .+...++...+ |.-+...+ +-++.. T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~rVrv~E~w~r~---------~~~~~~~~~~~----g~~~~~~~~~~~~~~~l~~g~~ 299 (772) T protein:vir:10 233 HNAWNEARAWTVQEDHWYNPTSKEICLVELWYRR---------WVQVHVLKSPD----GRVVEYDPNNLAHNIALASGRI 299 (772) T ss_pred ccccchhhccccccccccccCCceEEEEEEeeee---------eeeeeeeccCC----CceEeeCcccHHHHHHHhhccc Confidence 0001112233321100 00011111111 11110000 000000 Q ss_pred ----------cceEEcC----------C--CcceEEEecCCccccc-cCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 241 ----------EKTYIQG----------L--SRPLFNYLKPSGFNNI-NPHSPLGLGITDNSVSTLKKINDTYDQFWWEIK 297 (517) Q Consensus 241 ----------~~~~~~g----------~--~~p~f~~~~~~~~N~~-~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~ 297 (517) ...+++| + .+.+|++|. .... ....|+ +.+.++++.++.+|...|+..+.+- T Consensus 300 ~~~~~~~~rv~~~~~~g~~~L~~~~~p~~~~~fP~vP~~---g~r~~~~g~~~--G~vr~~kd~Qr~~N~~~S~~~~~l~ 374 (772) T protein:vir:10 300 SPKKVTVSRVRRSYWLGPHCLHDGPTPYTHRHFPYVPFF---GFREDATGIPY--GYVRGMKYAQDSLNSGVSKLRWGMS 374 (772) T ss_pred chheeeeeEEEEEEEecceeeccCCCCCCCCccceEEEe---eeEeccCCccc--chhhhhhhHHHHHHHHHHHHHHHHh Confidence 0001111 1 111222221 1111 123355 4688999999999999999999774 Q ss_pred hccceeecchHHhccCCCCcccccCccCCcccceeeeecCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccc Q lcl|Aclame:pro 298 MGQRTVFVSDVMLRTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGT 377 (517) Q Consensus 298 ~~~~~i~v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~ 377 (517) .. ++......+.... ..-......++.. -.|..-.+...+..++..++.=--.++++.++.....|...+|++... T Consensus 375 ~~--~~~~~~gav~~~d-~~~~e~~arp~~v-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~llq~~~~~i~~vsGv~~~~ 450 (772) T protein:vir:10 375 VA--RVERTKGAVAMTD-AQFRRQIARPDAD-IVLDENHMAKPGARFDVKRDYTLTDQHFQMLQDNRATIERVSNITAGF 450 (772) T ss_pred cc--cccccCCCccchh-HHHHHhccCCCCe-EEeCCccccCCCCCccccCCccccHHHHHHHHHHHHHHHHHhCCCHHH Confidence 43 3444443332211 0000000001110 011111111223345554433234678888988888899999999999 Q ss_pred cccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----ccCCCCCC----------------- Q lcl|Aclame:pro 378 FSFDGRSMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYK----LFGGEIPS----------------- 436 (517) Q Consensus 378 ~~~~~~~~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~----~~~~~~~~----------------- 436 (517) +|..+ ...++.+|.++..............++.+++.+-+.+|.+...+- .+.....+ T Consensus 451 lG~~~-na~SGvAi~~rq~qg~~~l~~~~Dnl~~~~~~~g~~lL~li~~~y~~er~~RI~~~d~~~~~~~v~in~~~~d~ 529 (772) T protein:vir:10 451 QGRKG-TATSGIQEQQQIEQSNQSIGRIMDNFRAGRTLVGELLLAMIVEDIGQERTEVVIEGDAVTADRVVVLNEPQRDP 529 (772) T ss_pred cCCCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEecCCCCCCCceEEeccceecc Confidence 88543 234555666666555555666677777777777777666544221 11000000 Q ss_pred --------------ccceEEEeCCCccCCHHHHHHHHHHHHhcCCCCHHHH------HHhhCCCCHHHHHHHHHHHHHhc Q lcl|Aclame:pro 437 --------------AEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTVEA------IQRIFKVPKKTAEQWLEEIRKDQ 496 (517) Q Consensus 437 --------------~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~~~------l~~~~~~~eeea~~el~~i~~E~ 496 (517) .++|.|+=..+.+.=.++.++.++++.. .++.... +.++-++.- +++.+++|++-+ T Consensus 530 ~tg~~~~~NDi~~g~yDv~i~~~p~~~t~r~~~~~~m~ql~~--~~~P~~~~~~~~~~le~~D~p~--~~ei~~~ir~~~ 605 (772) T protein:vir:10 530 QTGAAYLSNDLLRTRIKVALEDVPSTNSYRGQQLNAMSEAVK--SMPPQYQAAVLPFLVSLMDVPF--KRDVVEAIRAVD 605 (772) T ss_pred cccccceeccceeeeEEEEeeccccchHHHHHHHHHHHHHHh--ccChhHHHHHHHHHHhhcCCCC--hHHHHHHHHHHh Confidence 0111111111101113445555555542 2444321 122333321 333445555433 Q ss_pred cccCCCCCccccCCC-----------C-----CCCCC Q lcl|Aclame:pro 497 IELDPVTISQRAQKR-----------M-----FGDEE 517 (517) Q Consensus 497 ~~~~~~~~~~~~~~~-----------~-----~G~ee 517 (517) ...+|....+.+... + ..+.+ T Consensus 606 ~~~~peq~~~~~~q~~qq~~~~~~~el~~~q~~a~~~ 642 (772) T protein:vir:10 606 QQQTPEQIQQQIDQAVQDALAKAGNDIKLRELEIKER 642 (772) T ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 322221100000000 0 00000 No 103 >protein:vir:96068 Length: 765 # NCBI annotation: conserved hypothetical protein ORF017 # Family: family:all:297 # MgeID: mge:1597 # MgeName: F8 # Cross-refs: genbank:acc:YP_001294434;genbank:gi:149408331;genbank:GeneID:5237187 Probab=99.00 E-value=4.2e-10 Score=72.01 Aligned_cols=445 Identities=10% Similarity=0.019 Sum_probs=190.1 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhh-ccccCcCCHHHHH------------------HHHHHHHHhcC-CCccccccc Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSIN-DHEKINIDPNELA------------------RIERNLRQYEG-DYPQVEYIN 60 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~------------------~i~~~~~~Y~g-~~~~~~~~~ 60 (517) |.=.-++..|...+...-....++... ....++++.-..+ ... ...||.. .+.... T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ds~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~gyq--- 112 (765) T protein:vir:96 37 MIKLGKIRGWNVEPEKAPVIRSVKDFLEPGLSVAMDSAYGDGPTPAAKAAAGGQNPYVVPTM-LQDWYNSQGFIGYQ--- 112 (765) T ss_pred chhHHHHhhcccccccCCCCCCCCcccCcccceeccccccccccchHHHhhhccCccchhhH-HHhhhcccCCccHH--- Confidence 433333334333222111011111100 0011222111000 000 1112211 111100 Q ss_pred ccCccccccccccChHHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhC Q lcl|Aclame:pro 61 SQGKIQERDYMTLNLRKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALG 140 (517) Q Consensus 61 ~~~~~~~~~~~~ln~~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G 140 (517) -..-+.+..++++||+..|.-++.+...|+..+... .+...++|+..++.-++...+.++++.+-.+| T Consensus 113 -----l~alY~~~~l~rkiVd~pAeDa~R~g~~I~~~~~e~-------~~~~~~~l~~~~~rl~v~~~l~ea~~~~RlyG 180 (765) T protein:vir:96 113 -----ACAIISQHWLVDKACSMSGEDAARNGWELKSDGRKL-------SDEQSALIARRDMEFRVKDNLVELNRFKNVFG 180 (765) T ss_pred -----HHHHHHhCchhhhhhhcchHHhhcCCceeecCcccc-------CHHHHHHHHHHHHHhhHHHHHHHHHHHhhhce Confidence 011234568889999999999999887776543211 12233456655555578999999999999999 Q ss_pred CEEEEEEEe--CCeeEEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEe Q lcl|Aclame:pro 141 GLTVRPYVD--NGEIEFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELY 218 (517) Q Consensus 141 ~~~~k~~~d--~g~~~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly 218 (517) ++++-+-++ +++-. + -|| +..++..+-|. +...++.+-... +.+ .+.. T Consensus 181 ga~i~i~i~~~D~~~l------~--~PL--~~~~I~kg~~k------------gl~vldp~~~~~-------~~v-~e~~ 230 (765) T protein:vir:96 181 VRIALFVVESDDPDYY------E--KPF--NPDGIAPGSYK------------GISQIDPYWAMP-------QLT-AEST 230 (765) T ss_pred eeEEEEEecccCcchh------h--ccc--cccccccceee------------EEEEechhhccc-------ccc-hhcc Confidence 998766554 22110 0 122 11111100000 000000000000 000 0000 Q ss_pred ecCCccccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCC-CCCcchhhhhHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 219 KSDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHS-PLGLGITDNSVSTLKKINDTYDQFWWEIK 297 (517) Q Consensus 219 ~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~s-plG~S~~~~~~~lid~lD~~~s~~~~e~~ 297 (517) ..-.....|.+-- |. +... .++. .|. +.+.-.++++-..+.. .+|+|++..+.+.|..++.+......-+. T Consensus 231 ~Dp~sp~fg~P~~----y~-i~g~-~IH~-SRl-i~~~g~~lpd~lk~~~~~~G~Svlq~~yd~I~~~~~t~~~~a~Ll~ 302 (765) T protein:vir:96 231 ADPSAEHFYEPDF----WI-ISGK-KYHR-SHL-VVVRGPQPPDILKPTYIFGGIPLTQRIYERVYAAERTANEAPLLAM 302 (765) T ss_pred ccccccccCccee----ee-ecCc-eecc-ceE-EEecCCCchhhhccccCccCccHHHHHHHHHHHHHHHHHHHHHHHH Confidence 0000111111100 00 0000 0010 121 1111112223222222 35999999999999999988877776665 Q ss_pred hccceeecchHHhccCCCCccccc-CccCCcccceeeeecCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCcc Q lcl|Aclame:pro 298 MGQRTVFVSDVMLRTVPDESGMPP-PQVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVG 376 (517) Q Consensus 298 ~~~~~i~v~~~~l~~~~~~~~~~~-~~~fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~ 376 (517) ..+.+++-- ++++...+..+... ...+...+..+..+-.+. +..+++++.++ ......++.+++.|+..++++.. T Consensus 303 k~~~~v~k~-~~~~~l~~~~~l~~r~~~~~~~r~n~g~~~id~-ee~~e~~s~~l--sgl~d~l~~~~~~iAaas~IP~t 378 (765) T protein:vir:96 303 SKRTSTIHV-DVEKAIANEDAFNARLAFWIANRDNHGVKVIGI-DETMEQFDTNL--SDFDSVIMNQYQLVAAIAKTPAT 378 (765) T ss_pred Hhccceeee-chHhhhccHHHHHHHHHHHHHhcCCceeEEecC-CcceeEEeccc--CCHHHHHHHHHHHHHhhhCCCee Confidence 444444432 22222111111000 000111111111111122 23466666544 45666778888889999999754 Q ss_pred cc-ccCCCcc-chHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHH Q lcl|Aclame:pro 377 TF-SFDGRSM-KTATEIVSENDLTYRTRNDHV-YEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRS 453 (517) Q Consensus 377 ~~-~~~~~~~-~TAtei~a~~~~~~~t~~~~~-~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~ 453 (517) .| |-.-.|. .|+.+= .+-.|..+..+| ..++..|+.|+..+++- +.. ..+++|.|++-...+.. T Consensus 379 ~LfGqsp~GlnATGe~D---~~nYyD~I~s~Qe~~l~p~le~L~~li~~s-------~~i---~~d~~i~FnpL~~~sek 445 (765) T protein:vir:96 379 KLLGTSPKGFNATGEHE---TISYHEELESIQEHIFDPLLERHYLLLAKS-------ESI---DVQLEIVWNPVDSTTSQ 445 (765) T ss_pred eeccCCcccccCcchHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCC---CCcceEEeCCCCCCCHH Confidence 33 2221233 343322 233455555555 66888999988887642 112 23699999998888877 Q ss_pred HHHHH-------HHHHHhcCCCCHHHHHHhhC--------CCCHHHHHHHHHHHHHhccccCCCC---C--------ccc Q lcl|Aclame:pro 454 ALLRF-------YGQAKTFGFIPTVEAIQRIF--------KVPKKTAEQWLEEIRKDQIELDPVT---I--------SQR 507 (517) Q Consensus 454 ~~~~~-------~~~~~~~G~~S~~~~l~~~~--------~~~eeea~~el~~i~~E~~~~~~~~---~--------~~~ 507 (517) +.++. +.+++.+|++|..++..++- .+++++.+.+ +-+..|..+..+.. . ... T Consensus 446 EkAei~~k~Aea~~~~~~~Gvis~dEvR~~L~~~~~~g~~~l~d~~~e~~-~~~~pe~~~~~~~~~~~~~~~~~e~~~~~ 524 (765) T protein:vir:96 446 QQAELNNKKAATDEIYINSGVVSPDEVRERLRDDPRSGYNRLTDDQAETE-PGMSPENLAELEKAGAQSAKAKGEAERAE 524 (765) T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccccCCCCCCCccccccc-cCCCccccccccCCCcccccccCcccccc Confidence 66654 56677889999888666541 2344433211 00100000000000 0 000 Q ss_pred cCCCCC---CCCC Q lcl|Aclame:pro 508 AQKRMF---GDEE 517 (517) Q Consensus 508 ~~~~~~---G~ee 517 (517) +.+... ++.+ T Consensus 525 a~p~~~eg~~~~~ 537 (765) T protein:vir:96 525 AQAGAVEGAGDPV 537 (765) T ss_pred CCCCccCCCCccc Confidence 000000 0111 No 104 >protein:vir:105002 Length: 432 # NCBI annotation: putative phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1490 # MgeName: W Beta # Cross-refs: genbank:acc:YP_459967;genbank:gi:85701382;genbank:GeneID:3882143 Probab=98.97 E-value=8.4e-09 Score=64.85 Aligned_cols=405 Identities=12% Similarity=0.106 Sum_probs=175.6 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccCh----H Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNL----R 76 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~----~ 76 (517) ||||++|++||.- .-+. ....+.++.. ...+. .|..+.+..+. .. ....+.... - T Consensus 1 M~~~~r~~~~~~~-----~~r~-----~~~~~~~~~~-~~~~~---~~~g~~~~~~~-v~------~~~al~~~~v~~~i 59 (432) T protein:vir:10 1 MKIVDSVKKFFNF-----EKRQ-----TSQVIELNKD-DEKLL---EWLGISPSTIS-VK------GKNALKVATVFACI 59 (432) T ss_pred CChHHHHHHhcCc-----cccC-----cccccccCCc-hHHHH---HHhCCCcCccc-cc------hhhhhccHHHHHHH Confidence 9999999998840 0011 0011111111 11122 23322222211 00 011111111 1 Q ss_pred HHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHH-HHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeC-Cee- Q lcl|Aclame:pro 77 KLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQH-VFQHNKFIKNLSDYLEPTFALGGLTVRPYVDN-GEI- 153 (517) Q Consensus 77 ~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~-~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~-g~~- 153 (517) ..||+..|+| +..+.-.+....+ ......+...|+. --....-..-++.++...+..|.+++.+..+. |++ T Consensus 60 ~~ia~~ia~l----p~~~~~~~~~~~~--~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~ 133 (432) T protein:vir:10 60 KILSESVSKL----PLKIYQEDEYGIQ--RGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKVQ 133 (432) T ss_pred HHHHHhhccC----ceEEEEecCCcee--eccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEE Confidence 4555555543 3333222211111 1111223333321 00001123334456667777899999988874 554 Q ss_pred EEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccc Q lcl|Aclame:pro 154 EFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLE 233 (517) Q Consensus 154 ~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~ 233 (517) .+..++|+.+-++. +..+... .....+|. +..+ |....+ T Consensus 134 ~L~~i~~~~v~v~~-d~~~~~~-----------~~~~~~y~-----------------------~~~~-----g~~~~~- 172 (432) T protein:vir:10 134 ALWPIDASKVTVYI-DDVGLLN-----------SKTKMWYV-----------------------VNTG-----GQQRVL- 172 (432) T ss_pred EEEEEcCceeEEEE-cCccccc-----------ccceEEEE-----------------------EecC-----CeEEEE- Confidence 56778888776532 2211110 00000110 0000 111110 Q ss_pred cccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhc-cceeecchHHhcc Q lcl|Aclame:pro 234 ELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMG-QRTVFVSDVMLRT 312 (517) Q Consensus 234 ~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~-~~~i~v~~~~l~~ 312 (517) + +. -++||+.+.+ .+..+|+|.+.-+...++....+-....+-++.| ++.-++ .. T Consensus 173 --~---~~----------eiih~r~~~~----~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil-----~~ 228 (432) T protein:vir:10 173 --K---PE----------EILHFKNGIT----LDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLV-----QY 228 (432) T ss_pred --c---cc----------cEEEecCCCC----CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEE-----Ec Confidence 0 00 1456654321 2335699999888888877755544445555654 444332 11 Q ss_pred CCCCcc---cccCccCCcccceeeeecC------CCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCC Q lcl|Aclame:pro 313 VPDESG---MPPPQVFDPDVNVYKSIRM------GTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGR 383 (517) Q Consensus 313 ~~~~~~---~~~~~~fd~~~~~y~~~~~------~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~ 383 (517) ...-.. ......|. ..|.+... -+++-.++.++......++.+..+...++|+...|++|..+|...+ T Consensus 229 ~~~l~~e~~~~~~~~~~---~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~ 305 (432) T protein:vir:10 229 VGDLNEDAKKVFRENFE---SMSSGLQNSHRIALMPVGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLSK 305 (432) T ss_pred CCCCCHHHHHHHHHHHH---HHhcccccCCcceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCC Confidence 111100 00001111 11211110 0122235555555556677777778888999999999999986554 Q ss_pred ccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC-CCCCccceEEEeCCCccCCHHHHHHHHHH Q lcl|Aclame:pro 384 SMK-TATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGG-EIPSAEHIGVDFDDGVFQDRSALLRFYGQ 461 (517) Q Consensus 384 ~~~-TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~-~~~~~~~v~i~f~d~i~~d~~~~~~~~~~ 461 (517) +.. ++.+. . ...++.+|..++..|....+. .++.. .......+.++++.-+..|..+.++...+ T Consensus 306 ~~~s~~e~~---~----------~~~~~~~l~P~~~~ie~~ln~-kLl~~~~~~~g~~~~fd~~~l~~~d~~~~~~~~~~ 371 (432) T protein:vir:10 306 ATLNNIEQQ---Q----------QQFYTDTLQATLTMYEQEMTY-KLFLDSELDKGFYSKFNVDAILRADIKTRYEAYRT 371 (432) T ss_pred CCcccHHHH---H----------HHHHHHHHHHHHHHHHHHHHH-hhcChhhcCCCcEEEeechhhhcCCHHHHHHHHHH Confidence 332 22221 1 112223333333333221111 11111 11223446677777677899999999999 Q ss_pred HHhcCCCCHHHHHHhhCCCCHHH-HHHH-----HHHHHH--hccccCCCCCccccCCCCCCC Q lcl|Aclame:pro 462 AKTFGFIPTVEAIQRIFKVPKKT-AEQW-----LEEIRK--DQIELDPVTISQRAQKRMFGD 515 (517) Q Consensus 462 ~~~~G~~S~~~~l~~~~~~~eee-a~~e-----l~~i~~--E~~~~~~~~~~~~~~~~~~G~ 515 (517) ++.+|+++.-+++. ..|+..-+ .++. +..+.+ ++........++...++..|+ T Consensus 372 ~~~~G~~t~NE~R~-~~g~~pi~ggD~~~~~~n~~~~~~~~~~~~k~~~~~~~~~~~~~~~~ 432 (432) T protein:vir:10 372 GIQGGFLKPNEARS-KEDLPPEAGGDRLLVNGNMLPIDMAGQAYLKGGDTNGEVSKEGNEGN 432 (432) T ss_pred HHhCCCcCHHHHHH-HhCCCCCCCCCeEeecccccchhhccccccCCCCCCCCCCCCCCCCC Confidence 99999999999765 44554311 1111 111110 000001111111112222233 No 105 >protein:vir:107605 Length: 432 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1491 # MgeName: Gamma # Cross-refs: genbank:acc:YP_338186;genbank:gi:77020175;genbank:GeneID:3703736 Probab=98.97 E-value=8.4e-09 Score=64.85 Aligned_cols=405 Identities=12% Similarity=0.106 Sum_probs=175.6 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccCh----H Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNL----R 76 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~----~ 76 (517) ||||++|++||.- .-+. ....+.++.. ...+. .|..+.+..+. .. ....+.... - T Consensus 1 M~~~~r~~~~~~~-----~~r~-----~~~~~~~~~~-~~~~~---~~~g~~~~~~~-v~------~~~al~~~~v~~~i 59 (432) T protein:vir:10 1 MKIVDSVKKFFNF-----EKRQ-----TSQVIELNKD-DEKLL---EWLGISPSTIS-VK------GKNALKVATVFACI 59 (432) T ss_pred CChHHHHHHhcCc-----cccC-----cccccccCCc-hHHHH---HHhCCCcCccc-cc------hhhhhccHHHHHHH Confidence 9999999998840 0011 0011111111 11122 23322222211 00 011111111 1 Q ss_pred HHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHH-HHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeC-Cee- Q lcl|Aclame:pro 77 KLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQH-VFQHNKFIKNLSDYLEPTFALGGLTVRPYVDN-GEI- 153 (517) Q Consensus 77 ~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~-~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~-g~~- 153 (517) ..||+..|+| +..+.-.+....+ ......+...|+. --....-..-++.++...+..|.+++.+..+. |++ T Consensus 60 ~~ia~~ia~l----p~~~~~~~~~~~~--~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~ 133 (432) T protein:vir:10 60 KILSESVSKL----PLKIYQEDEYGIQ--RGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKVQ 133 (432) T ss_pred HHHHHhhccC----ceEEEEecCCcee--eccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEE Confidence 4555555543 3333222211111 1111223333321 00001123334456667777899999988874 554 Q ss_pred EEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccc Q lcl|Aclame:pro 154 EFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLE 233 (517) Q Consensus 154 ~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~ 233 (517) .+..++|+.+-++. +..+... .....+|. +..+ |....+ T Consensus 134 ~L~~i~~~~v~v~~-d~~~~~~-----------~~~~~~y~-----------------------~~~~-----g~~~~~- 172 (432) T protein:vir:10 134 ALWPIDASKVTVYI-DDVGLLN-----------SKTKMWYV-----------------------VNTG-----GQQRVL- 172 (432) T ss_pred EEEEEcCceeEEEE-cCccccc-----------ccceEEEE-----------------------EecC-----CeEEEE- Confidence 56778888776532 2211110 00000110 0000 111110 Q ss_pred cccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhc-cceeecchHHhcc Q lcl|Aclame:pro 234 ELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMG-QRTVFVSDVMLRT 312 (517) Q Consensus 234 ~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~-~~~i~v~~~~l~~ 312 (517) + +. -++||+.+.+ .+..+|+|.+.-+...++....+-....+-++.| ++.-++ .. T Consensus 173 --~---~~----------eiih~r~~~~----~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil-----~~ 228 (432) T protein:vir:10 173 --K---PE----------EILHFKNGIT----LDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLV-----QY 228 (432) T ss_pred --c---cc----------cEEEecCCCC----CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEE-----Ec Confidence 0 00 1456654321 2335699999888888877755544445555654 444332 11 Q ss_pred CCCCcc---cccCccCCcccceeeeecC------CCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCC Q lcl|Aclame:pro 313 VPDESG---MPPPQVFDPDVNVYKSIRM------GTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGR 383 (517) Q Consensus 313 ~~~~~~---~~~~~~fd~~~~~y~~~~~------~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~ 383 (517) ...-.. ......|. ..|.+... -+++-.++.++......++.+..+...++|+...|++|..+|...+ T Consensus 229 ~~~l~~e~~~~~~~~~~---~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~ 305 (432) T protein:vir:10 229 VGDLNEDAKKVFRENFE---SMSSGLQNSHRIALMPVGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLSK 305 (432) T ss_pred CCCCCHHHHHHHHHHHH---HHhcccccCCcceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCC Confidence 111100 00001111 11211110 0122235555555556677777778888999999999999986554 Q ss_pred ccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC-CCCCccceEEEeCCCccCCHHHHHHHHHH Q lcl|Aclame:pro 384 SMK-TATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGG-EIPSAEHIGVDFDDGVFQDRSALLRFYGQ 461 (517) Q Consensus 384 ~~~-TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~-~~~~~~~v~i~f~d~i~~d~~~~~~~~~~ 461 (517) +.. ++.+. . ...++.+|..++..|....+. .++.. .......+.++++.-+..|..+.++...+ T Consensus 306 ~~~s~~e~~---~----------~~~~~~~l~P~~~~ie~~ln~-kLl~~~~~~~g~~~~fd~~~l~~~d~~~~~~~~~~ 371 (432) T protein:vir:10 306 ATLNNIEQQ---Q----------QQFYTDTLQATLTMYEQEMTY-KLFLDSELDKGFYSKFNVDAILRADIKTRYEAYRT 371 (432) T ss_pred CCcccHHHH---H----------HHHHHHHHHHHHHHHHHHHHH-hhcChhhcCCCcEEEeechhhhcCCHHHHHHHHHH Confidence 332 22221 1 112223333333333221111 11111 11223446677777677899999999999 Q ss_pred HHhcCCCCHHHHHHhhCCCCHHH-HHHH-----HHHHHH--hccccCCCCCccccCCCCCCC Q lcl|Aclame:pro 462 AKTFGFIPTVEAIQRIFKVPKKT-AEQW-----LEEIRK--DQIELDPVTISQRAQKRMFGD 515 (517) Q Consensus 462 ~~~~G~~S~~~~l~~~~~~~eee-a~~e-----l~~i~~--E~~~~~~~~~~~~~~~~~~G~ 515 (517) ++.+|+++.-+++. ..|+..-+ .++. +..+.+ ++........++...++..|+ T Consensus 372 ~~~~G~~t~NE~R~-~~g~~pi~ggD~~~~~~n~~~~~~~~~~~~k~~~~~~~~~~~~~~~~ 432 (432) T protein:vir:10 372 GIQGGFLKPNEARS-KEDLPPEAGGDRLLVNGNMLPIDMAGQAYLKGGDTNGEVSKEGNEGN 432 (432) T ss_pred HHhCCCcCHHHHHH-HhCCCCCCCCCeEeecccccchhhccccccCCCCCCCCCCCCCCCCC Confidence 99999999999765 44554311 1111 111110 000001111111112222233 No 106 >protein:vir:102855 Length: 432 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1492 # MgeName: Cherry # Cross-refs: genbank:acc:YP_338135;genbank:gi:77020228;genbank:GeneID:3703764 Probab=98.97 E-value=8.4e-09 Score=64.85 Aligned_cols=405 Identities=12% Similarity=0.106 Sum_probs=175.6 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccCh----H Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNL----R 76 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~----~ 76 (517) ||||++|++||.- .-+. ....+.++.. ...+. .|..+.+..+. .. ....+.... - T Consensus 1 M~~~~r~~~~~~~-----~~r~-----~~~~~~~~~~-~~~~~---~~~g~~~~~~~-v~------~~~al~~~~v~~~i 59 (432) T protein:vir:10 1 MKIVDSVKKFFNF-----EKRQ-----TSQVIELNKD-DEKLL---EWLGISPSTIS-VK------GKNALKVATVFACI 59 (432) T ss_pred CChHHHHHHhcCc-----cccC-----cccccccCCc-hHHHH---HHhCCCcCccc-cc------hhhhhccHHHHHHH Confidence 9999999998840 0011 0011111111 11122 23322222211 00 011111111 1 Q ss_pred HHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHH-HHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeC-Cee- Q lcl|Aclame:pro 77 KLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQH-VFQHNKFIKNLSDYLEPTFALGGLTVRPYVDN-GEI- 153 (517) Q Consensus 77 ~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~-~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~-g~~- 153 (517) ..||+..|+| +..+.-.+....+ ......+...|+. --....-..-++.++...+..|.+++.+..+. |++ T Consensus 60 ~~ia~~ia~l----p~~~~~~~~~~~~--~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~ 133 (432) T protein:vir:10 60 KILSESVSKL----PLKIYQEDEYGIQ--RGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKVQ 133 (432) T ss_pred HHHHHhhccC----ceEEEEecCCcee--eccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEE Confidence 4555555543 3333222211111 1111223333321 00001123334456667777899999988874 554 Q ss_pred EEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccc Q lcl|Aclame:pro 154 EFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLE 233 (517) Q Consensus 154 ~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~ 233 (517) .+..++|+.+-++. +..+... .....+|. +..+ |....+ T Consensus 134 ~L~~i~~~~v~v~~-d~~~~~~-----------~~~~~~y~-----------------------~~~~-----g~~~~~- 172 (432) T protein:vir:10 134 ALWPIDASKVTVYI-DDVGLLN-----------SKTKMWYV-----------------------VNTG-----GQQRVL- 172 (432) T ss_pred EEEEEcCceeEEEE-cCccccc-----------ccceEEEE-----------------------EecC-----CeEEEE- Confidence 56778888776532 2211110 00000110 0000 111110 Q ss_pred cccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhc-cceeecchHHhcc Q lcl|Aclame:pro 234 ELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMG-QRTVFVSDVMLRT 312 (517) Q Consensus 234 ~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~-~~~i~v~~~~l~~ 312 (517) + +. -++||+.+.+ .+..+|+|.+.-+...++....+-....+-++.| ++.-++ .. T Consensus 173 --~---~~----------eiih~r~~~~----~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil-----~~ 228 (432) T protein:vir:10 173 --K---PE----------EILHFKNGIT----LDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLV-----QY 228 (432) T ss_pred --c---cc----------cEEEecCCCC----CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEE-----Ec Confidence 0 00 1456654321 2335699999888888877755544445555654 444332 11 Q ss_pred CCCCcc---cccCccCCcccceeeeecC------CCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCC Q lcl|Aclame:pro 313 VPDESG---MPPPQVFDPDVNVYKSIRM------GTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGR 383 (517) Q Consensus 313 ~~~~~~---~~~~~~fd~~~~~y~~~~~------~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~ 383 (517) ...-.. ......|. ..|.+... -+++-.++.++......++.+..+...++|+...|++|..+|...+ T Consensus 229 ~~~l~~e~~~~~~~~~~---~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~ 305 (432) T protein:vir:10 229 VGDLNEDAKKVFRENFE---SMSSGLQNSHRIALMPVGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLSK 305 (432) T ss_pred CCCCCHHHHHHHHHHHH---HHhcccccCCcceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCC Confidence 111100 00001111 11211110 0122235555555556677777778888999999999999986554 Q ss_pred ccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC-CCCCccceEEEeCCCccCCHHHHHHHHHH Q lcl|Aclame:pro 384 SMK-TATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGG-EIPSAEHIGVDFDDGVFQDRSALLRFYGQ 461 (517) Q Consensus 384 ~~~-TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~-~~~~~~~v~i~f~d~i~~d~~~~~~~~~~ 461 (517) +.. ++.+. . ...++.+|..++..|....+. .++.. .......+.++++.-+..|..+.++...+ T Consensus 306 ~~~s~~e~~---~----------~~~~~~~l~P~~~~ie~~ln~-kLl~~~~~~~g~~~~fd~~~l~~~d~~~~~~~~~~ 371 (432) T protein:vir:10 306 ATLNNIEQQ---Q----------QQFYTDTLQATLTMYEQEMTY-KLFLDSELDKGFYSKFNVDAILRADIKTRYEAYRT 371 (432) T ss_pred CCcccHHHH---H----------HHHHHHHHHHHHHHHHHHHHH-hhcChhhcCCCcEEEeechhhhcCCHHHHHHHHHH Confidence 332 22221 1 112223333333333221111 11111 11223446677777677899999999999 Q ss_pred HHhcCCCCHHHHHHhhCCCCHHH-HHHH-----HHHHHH--hccccCCCCCccccCCCCCCC Q lcl|Aclame:pro 462 AKTFGFIPTVEAIQRIFKVPKKT-AEQW-----LEEIRK--DQIELDPVTISQRAQKRMFGD 515 (517) Q Consensus 462 ~~~~G~~S~~~~l~~~~~~~eee-a~~e-----l~~i~~--E~~~~~~~~~~~~~~~~~~G~ 515 (517) ++.+|+++.-+++. ..|+..-+ .++. +..+.+ ++........++...++..|+ T Consensus 372 ~~~~G~~t~NE~R~-~~g~~pi~ggD~~~~~~n~~~~~~~~~~~~k~~~~~~~~~~~~~~~~ 432 (432) T protein:vir:10 372 GIQGGFLKPNEARS-KEDLPPEAGGDRLLVNGNMLPIDMAGQAYLKGGDTNGEVSKEGNEGN 432 (432) T ss_pred HHhCCCcCHHHHHH-HhCCCCCCCCCeEeecccccchhhccccccCCCCCCCCCCCCCCCCC Confidence 99999999999765 44554311 1111 111110 000001111111112222233 No 107 >protein:vir:107662 Length: 427 # NCBI annotation: putative portal protein # Family: family:all:297 # MgeID: mge:1518 # MgeName: T1 # Cross-refs: genbank:acc:YP_003893;genbank:gi:45686310;genbank:GeneID:2773002 Probab=98.96 E-value=1.8e-09 Score=68.47 Aligned_cols=395 Identities=11% Similarity=0.072 Sum_probs=169.5 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccc---cccccCccccccccccChHH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVE---YINSQGKIQERDYMTLNLRK 77 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~---~~~~~~~~~~~~~~~ln~~~ 77 (517) |++|. . +.+.+.+ -|..+... +....+-.-..-..+-.+++ T Consensus 1 ~~~~~------~-----------------------d~~~~~~-------~~~~~~~~~~~~~~~~~~~l~a~Y~~~~l~~ 44 (427) T protein:vir:10 1 MKIVK------H-----------------------DGYNDIF-------NGGADGSPKPFFMSDASYHVGSFYNDNATAK 44 (427) T ss_pred CCccc------c-----------------------chHHHHh-------hcCCCCcccCccccCchHHHHHHHHcCchhh Confidence 33221 1 1111111 00000000 00000000011123447889 Q ss_pred HHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeCCeeEEEE Q lcl|Aclame:pro 78 LSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDNGEIEFSW 157 (517) Q Consensus 78 ~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~g~~~i~~ 157 (517) +||+..|+-++.+-..|..++. .+.+...++.-++...+.+++..+-.+|++++-+-+++++..- T Consensus 45 ~~Vd~~aed~~r~g~~i~g~~~-------------~~~~~~~~~~l~~~~~l~~a~~~~rl~G~a~i~i~v~d~~~l~-- 109 (427) T protein:vir:10 45 RIVDVIPEEMVTAGFKMSGVKD-------------EKEFKSLWDSYKLDSSLVDLLCWARLYGGAAMVAIIKDNRMLT-- 109 (427) T ss_pred hhhccchHHhhcCCccccCccH-------------HHHHHHHHHHhhHHHHHHHHHHhccccceeEEEEEecCCCccc-- Confidence 9999999999987666543210 0123333444468899999999999999999988776554210 Q ss_pred EcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEe-eccee-eccceEEEEEEEeecCCccccCcccccccc Q lcl|Aclame:pro 158 ALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHE-WEKTE-EGESLYVITNELYKSDNEGEIGKRIPLEEL 235 (517) Q Consensus 158 v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~-~~~~~-~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~ 235 (517) -|+ +..+...++.+........ + ++.. +-.-. .....|.|. +....-+..| | T Consensus 110 ------~p~--~~~g~l~~l~v~d~~~~~~-----~---~~~~dp~s~~fg~P~~y~v~------~~~~~~~~~i----H 163 (427) T protein:vir:10 110 ------SQA--KPGAKLEGVRVYDRFAITV-----E---KRVTNARSPRYGEPEIYKVS------PGDNMQPYLI----H 163 (427) T ss_pred ------ccc--CCCcceeEEEEechhcccc-----c---ccccCccccccCcceEEEEe------cCCCCcceEE----c Confidence 111 1111111111100000000 0 0000 00000 000111111 1000000000 1 Q ss_pred cCCCCcceEEcCCCcceEEEecCCccccc-cCCCCCCcchhhh-hHHHHHHHHHHHHHHHHHHHhccceee-cc--hHHh Q lcl|Aclame:pro 236 YEGMQEKTYIQGLSRPLFNYLKPSGFNNI-NPHSPLGLGITDN-SVSTLKKINDTYDQFWWEIKMGQRTVF-VS--DVML 310 (517) Q Consensus 236 ~~~l~~~~~~~g~~~p~f~~~~~~~~N~~-~~~splG~S~~~~-~~~lid~lD~~~s~~~~e~~~~~~~i~-v~--~~~l 310 (517) +..+ +.+.|. +.|+.. .....+|.|++.. +.+.+..++.+......-+...+.+++ ++ .+++ T Consensus 164 ~SRl---i~~~g~----------~~p~~~~~~~~~~G~S~l~~~~~~~i~~~~~~~~~~~~l~~k~~~~v~k~~~l~~~~ 230 (427) T protein:vir:10 164 HSRV---FIADGE----------RVAQQARKQNQGWGASVLNKSLIDAICDYDYCESLATQILRRKQQAVWKVKGLAEMC 230 (427) T ss_pred cccE---EEecCC----------CchhhhcccCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHh Confidence 1100 122222 222221 1245689999875 568888888877776666644444443 32 1222 Q ss_pred ccCCCCccccc-CccCCcccceeeeecCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCcccc-ccCCCcc-ch Q lcl|Aclame:pro 311 RTVPDESGMPP-PQVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTF-SFDGRSM-KT 387 (517) Q Consensus 311 ~~~~~~~~~~~-~~~fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~-~~~~~~~-~T 387 (517) ........... ...+.........+-.+..+..+++++.++ ..-...++.+.+.|+..++++...+ |-..+|. .| T Consensus 231 ~~~~~~~~~~~r~~~~~~~~~~~~~~~l~~~~e~~e~~~~~l--sgl~~~~~~~~~~iaaa~~IP~t~L~G~sp~Glnst 308 (427) T protein:vir:10 231 DDDDAQYAARLRLAQVDDNSGVGRAIGIDAETEEYDVLNSDI--SGVPEFLSSKMDRIVSLSGIHEIIIKNKNVGGVSAS 308 (427) T ss_pred cCccchHHHHHHHHHHHHhcCcccceeeecCCCceeEEeccc--CChHHHHHHHHHHHHhhhCCCeeeeccCCccccccc Confidence 11110000000 001111111122222233334566666544 4456667788888999999987655 3222232 33 Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHH------- Q lcl|Aclame:pro 388 ATEIVSENDLTYRTRNDHV-YEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFY------- 459 (517) Q Consensus 388 Atei~a~~~~~~~t~~~~~-~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~------- 459 (517) +.+- .+-.+..++.+| ..++.+|+.|+..+++ ..++++.|+.-...++.+.++.. T Consensus 309 gd~D---~~nyyd~i~~~Qe~~l~p~l~~l~~~i~~--------------s~~~~~~f~pL~~~s~kEkaei~~~~a~a~ 371 (427) T protein:vir:10 309 QNTA---LETFYKLVDRKREEDYRPLLEFLLPFIVD--------------EEEWSIEFEPLSVPSKKEESEITKNNVESV 371 (427) T ss_pred hhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------------CCCcEEEeCCCCCCCHHHHHHHHHHHHHHH Confidence 3333 333445555544 6688888888776542 13689999998888877766543 Q ss_pred HHHHhcCCCCHHHHHHhhCCCCHHHHHHHHHHHHHhccccC--CC-----CCccccCCCCCCCCC Q lcl|Aclame:pro 460 GQAKTFGFIPTVEAIQRIFKVPKKTAEQWLEEIRKDQIELD--PV-----TISQRAQKRMFGDEE 517 (517) Q Consensus 460 ~~~~~~G~~S~~~~l~~~~~~~eeea~~el~~i~~E~~~~~--~~-----~~~~~~~~~~~G~ee 517 (517) .+++.+|+++.++ +.++|..+-.+..-.+ .. .....+.+ ..||+| T Consensus 372 ~~~~~~gvi~~~e------------~r~~L~~~~~~~~~~~~~~~~~e~~~~~~e~~p-~~~e~~ 423 (427) T protein:vir:10 372 TKAITEQIIDLEE------------ARDTLRSIAPEFKLKDGNNINIREPEETTEPEP-GLGEKL 423 (427) T ss_pred HHHHhcCCCCHHH------------HHHHHHhhhccccCCCCccccccccchhcCCCC-CCCCCC Confidence 3444555555554 3333332211110000 00 00001111 112222 No 108 >protein:vir:102668 Length: 547 # NCBI annotation: Hypothetical protein # Family: family:all:481 # MgeID: mge:1624 # MgeName: VP2 # Cross-refs: genbank:acc:YP_024419;genbank:gi:48696640;genbank:GeneID:2948135 Probab=98.96 E-value=9.6e-09 Score=64.54 Aligned_cols=458 Identities=11% Similarity=0.041 Sum_probs=199.5 Q ss_pred hhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCccccccccc----Cc--cccccccccChHHHHHHHHhhhhcCCc Q lcl|Aclame:pro 18 LSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQ----GK--IQERDYMTLNLRKLSADVLSGLVFNEQ 91 (517) Q Consensus 18 ~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~----~~--~~~~~~~~ln~~~~i~~~~A~ll~~e~ 91 (517) |..+.+++--+ .+-.+...-...|+.+|.=-.|.+...... +. .++..+..-+.+...++.+|+-|++-. T Consensus 1 ~~~~~l~~r~~----~l~~~R~~~e~~w~e~~~~~lP~~~~~~~~~~~~~~~~~~~~~~i~dst~~~a~~~Las~L~~~l 76 (547) T protein:vir:10 1 MENSKIVKRLD----FLKTDRKNVEQIWDCIRKYIMPMRSDFFSDLRSEGSINWNQNREVFDSTAGDGLETLSSSLHGSL 76 (547) T ss_pred CCHHHHHHHHH----HHHHHhhHHHHHHHHHHHHhcccccccccCCCCCcccccccccccccchHHHHHHHHHHHHHHhh Confidence 11111111100 000111122456666543322222111111 10 111222233555555666665444321 Q ss_pred --c-----eeEecCcccccc--cccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeC---CeeEEEEEc Q lcl|Aclame:pro 92 --C-----EVYVSDAKDEEK--KDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDN---GEIEFSWAL 159 (517) Q Consensus 92 --~-----~i~~~~~~~~~~--~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~---g~~~i~~v~ 159 (517) | .+.+.+....+. .....+...+.+...+..++|...+.++..+..++|++.+.+-.|. +.+++..++ T Consensus 77 tPp~~~WF~l~~~d~~~~~~~~v~~~L~~ve~~i~~~l~~snf~~~~~~~~~~L~~~G~a~l~~~~d~~~~~~~r~~~~p 156 (547) T protein:vir:10 77 TSPATKWFELAFRDKELNSDDECRKWLENATHDVYSALQDSNFNLEANETYIDLCGYGNAIMVEEEDEDEEGSVVFQSSP 156 (547) T ss_pred cCCCCcccccccCCccccchHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCcEeEEeccCCCCCCceeEEEee Confidence 1 133333322111 1111223334455678889999999999999999999987765553 568899999 Q ss_pred CCeEEEEEEcCCceEEEEEEEEEEEEe---------------------cCCcEEEEEEEEEeecceeeccceEEEEEEEe Q lcl|Aclame:pro 160 ANAFYPLRSNSNGISEGVMKSVTTKVI---------------------GNKTVYYTLLEFHEWEKTEEGESLYVITNELY 218 (517) Q Consensus 160 a~~~~P~~~~~~~~~~~a~~~~~~~~~---------------------~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly 218 (517) ...++- ..|..+....+|.. +.-+. .+...+...+| |.+.+| T Consensus 157 l~~~~v-~~d~~G~v~~i~r~-~~~t~~qi~~~fg~~~l~~~v~~~~~~~~~~~~~~~~---------------v~~~v~ 219 (547) T protein:vir:10 157 IQDSYF-EEDSRGQVVNFYRV-FRWTPAQIYDRFGDEGTPEAIIKKAKEASNQAALKQE---------------VVMCVF 219 (547) T ss_pred cceEEE-eeCCCcCeeeeeee-eeccHHHHHHhcCcccCCHHHHHHHhcCCCcccceEE---------------EEEEEe Confidence 999885 55666655554432 11100 00111111111 112222 Q ss_pred ecCCc--ccc------CcccccccccCCCCc-c--eEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHH Q lcl|Aclame:pro 219 KSDNE--GEI------GKRIPLEELYEGMQE-K--TYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKIND 287 (517) Q Consensus 219 ~~~~~--~~l------G~~v~l~~~~~~l~~-~--~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~ 287 (517) ...+. +.. ....|...+|-.... . ....|+...||+.+ ..+..+++.||+|--..+.+-++.|+. T Consensus 220 ~~~~~~~~~~~~~~~~~~~~p~~s~~~e~~~~~~~l~esg~~e~P~~~~----Rw~~~~ge~YGrgp~~~~l~D~k~L~~ 295 (547) T protein:vir:10 220 TRYDKKQNRNAGTVLAPTERPFGKKWILKEGAVQLGEEGGYYEMPAYAI----RWRKSAGSQWGFGPSHLALPDVLTANR 295 (547) T ss_pred eccCCCCCccccceeeccccceeEEEEEecCceeeeecCCcccCCeeee----eeeecCCcccccchHHHHHHHHHHHHH Confidence 11100 000 011111122110000 0 11123333344433 355667889999999999999999998 Q ss_pred HHHHHHHHH-HhccceeecchHHhccCCCCcccccCccCCcccceeeeecCCCCCCcceEEecccChHHHHHHHHHHHHH Q lcl|Aclame:pro 288 TYDQFWWEI-KMGQRTVFVSDVMLRTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRT 366 (517) Q Consensus 288 ~~s~~~~e~-~~~~~~i~v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~ 366 (517) .--...... ...++...||++-+....+... .-..+ .++...++.++...+...-...++.+-+. T Consensus 296 l~~~~l~~~~~~~~pp~~v~~~g~~~~~~~~p---------gg~~~-----~~~~~~v~pl~~~~~~~~~~~~i~~~~~r 361 (547) T protein:vir:10 296 YVELVLRSSEKVIDPAIMVTERGLISDIDLGA---------SGLTV-----VRDMESMKPFESRARFDVSSIQLTDLRSA 361 (547) T ss_pred HHHHHHHHHHHHhcCceecccccccccceecC---------Ceeee-----cCCcccceeeecccchHHHHHHHHHHHHH Confidence 887777776 4667777776543322111100 00011 12233444444443334444445554444 Q ss_pred HHHHhCCCccccccCCCccchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhccCCCCC-----Cccce Q lcl|Aclame:pro 367 LEMELKLSVGTFSFDGRSMKTATEIVSENDLTYRTRNDHVYEVE-QFIKGLVISVLELAKTYKLFGGEIP-----SAEHI 440 (517) Q Consensus 367 i~~~~g~s~~~~~~~~~~~~TAtei~a~~~~~~~t~~~~~~~~~-~al~~li~~il~~~~~~~~~~~~~~-----~~~~v 440 (517) |... |=...|...+....|||||....+...+...-.-..+. ..|.-|+..++.++.-.+.....+. ...++ T Consensus 362 I~~a--f~~d~~~~~~~~~~TAtEV~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~p~~l~~~~~~~~ 439 (547) T protein:vir:10 362 VRRI--YYVDQLQMKDSPAMTATEVQVRYELMQRLLGPTLGRLENDFLSPMIQRTFNIRFRAGKLGELPSKLLESGKAAM 439 (547) T ss_pred HHHH--hhhhhhhcCCCccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhccCcceE Confidence 4322 11222333345678999999999998888776544443 4556666666555543332222111 12345 Q ss_pred EEEeCCCccCCHH----HHHHHHHHHHh--cCC-------CCHHHHH---HhhCCCC------HHHHHHHHHHHH----- Q lcl|Aclame:pro 441 GVDFDDGVFQDRS----ALLRFYGQAKT--FGF-------IPTVEAI---QRIFKVP------KKTAEQWLEEIR----- 493 (517) Q Consensus 441 ~i~f~d~i~~d~~----~~~~~~~~~~~--~G~-------~S~~~~l---~~~~~~~------eeea~~el~~i~----- 493 (517) .|++-..+...-. +.+.+.++.+. +++ +....++ ....|++ ++|+++..++.. T Consensus 440 ~v~~is~Laraq~~~~~~~i~~~~~~v~~laq~~P~vld~id~d~~~~~~a~~~Gvp~~~irs~eev~~~r~qr~~~~q~ 519 (547) T protein:vir:10 440 DIVYTGPLSRAQKIDQAASIERWAGSTAQLAEINPEVLDIPDWDEMVRMLGSLLGAPQTLMRPKAKVTSIRKNRSQTQQK 519 (547) T ss_pred EEEeccHHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCHHHHHHHHHHHhCCChhccCCHHHHHHHHHHHHHHHHH Confidence 6666544333211 11122222221 121 3333333 3445653 444433322211 Q ss_pred HhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 494 KDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 494 ~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) ..++.......+.-+.-| .|+-= T Consensus 520 ~~qaa~~~~~g~~m~~~~-~~~a~ 542 (547) T protein:vir:10 520 AEQAAIAEAEGNAMEAQG-KGQAA 542 (547) T ss_pred HHHHHHHHHHHHHHHhhc-Ccccc Confidence 111110000000000000 00000 No 109 >protein:vir:1538 Length: 535 # NCBI annotation: head-to-tail joining protein # Family: family:all:481 # MgeID: mge:31 # MgeName: phiYeO3-12 # Cross-refs: genbank:acc:NP_052106;swissprot:trembl:q9t110;genbank:gi:9634032;uniprot:Q9T110;genbank:GeneID:1262384 Probab=98.96 E-value=9.6e-09 Score=64.53 Aligned_cols=460 Identities=9% Similarity=-0.015 Sum_probs=193.1 Q ss_pred hHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccChHHHHHHH Q lcl|Aclame:pro 3 VIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLRKLSADV 82 (517) Q Consensus 3 ~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~~~i~~~ 82 (517) |=+..|+-+-+ +.++..-+ .+-.+...-...|+.++.=..|.+-.....+......+..=..+...++. T Consensus 1 m~~~~~~~~~~-------~~~k~r~~----~l~~~R~~~e~~w~e~~~~~lP~~~~~~~~~~~~~~~~~~dst~~~a~~~ 69 (535) T protein:vir:15 1 MADSKRTGLGE-------DGAKATYD----RLTNDRRAYETRAENCAQYTIPSLFPKESDNESTDYTTPWQAVGARGLNN 69 (535) T ss_pred CCccchhccch-------HHHHHHHH----HHHHHhhHHHHHHHHHHHHhcccccCCCCCcccccccccccccHHHHHHH Confidence 11111111100 00000000 00011112244565554332222211111111111122222344555555 Q ss_pred HhhhhcCC--cce----eEecCccccc--ccccchhHHH-------HHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEE Q lcl|Aclame:pro 83 LSGLVFNE--QCE----VYVSDAKDEE--KKDNSFKTAH-------EFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPY 147 (517) Q Consensus 83 ~A~ll~~e--~~~----i~~~~~~~~~--~~~~~~~~~~-------~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~ 147 (517) +|+-|++- |++ +.+++....+ .........+ +.+...+..++|...+.++..+..++|.+.+..- T Consensus 70 Laa~l~~~ltP~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l~~~ 149 (535) T protein:vir:15 70 LASKLMLALFPMQSWMKLTISEYEAKQLVGDPDGLAKVDEGLSMVERIIMNYIESNSYRVTLFECLKQLIVAGNALLYLP 149 (535) T ss_pred HHHHHHHhhcCCCcccccccChHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCceeEEee Confidence 55544332 222 2222211111 0111112233 4444558889999999999999999999877654 Q ss_pred EeC-CeeEEEEEcCCeEEEEEEcCCceEEEEEEEEEEEE-------------e------cCCcEEEEEEEEEeecceeec Q lcl|Aclame:pro 148 VDN-GEIEFSWALANAFYPLRSNSNGISEGVMKSVTTKV-------------I------GNKTVYYTLLEFHEWEKTEEG 207 (517) Q Consensus 148 ~d~-g~~~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~-------------~------~~~~~~yt~lE~h~~~~~~~~ 207 (517) .+. +.+++..++-..++- ..|..+....+|....... . .+.-.+|+++... .. T Consensus 150 ~~~~~~~~f~~~pl~~~~v-~~d~~G~vd~i~r~~~~t~~~l~~~~~~~~~~~~~~~~~~~~v~v~~~v~~~------~~ 222 (535) T protein:vir:15 150 EPEGSYNPMKLYRLSSYVV-QRDAYGNVLQIVTRDQIAFGALPEDVRSAVEKAGGEKKMDEMVDVYTHVYLD------EE 222 (535) T ss_pred cCCCCceeeEEEEcCeeEE-eeCCCCCeeEEEEeEeecHHHHHHHHhHhhhccccccCCCCceeEEEEEEEe------cC Confidence 454 457888999888774 5566666655554322110 0 0011233333211 11 Q ss_pred cceEEEEEEEeecCCccccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHH Q lcl|Aclame:pro 208 ESLYVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKIND 287 (517) Q Consensus 208 ~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~ 287 (517) .+.|.+-++++ |..+++.. .-.++...||+.+ -.+..+++.||+|--..+.+-++.|+. T Consensus 223 ~~~~~~~~e~~--------g~~~~~~~---------~~~~~~~~P~i~~----Rw~~~~ge~YGrgp~~~~l~D~k~L~~ 281 (535) T protein:vir:15 223 SGDYLKYEEVE--------DVEIDGSD---------ATYPTDAMPYIPV----RMVRIDGESYGRSYCEEYLGDLRSLEN 281 (535) T ss_pred CCcEEEEEEee--------Cccccccc---------cccccccCCceee----eeeecCCCccccchHHHHHHHHHHHHH Confidence 23333322221 22222211 0012222334333 345566889999999999999999998 Q ss_pred HHHHHHHHH-HhccceeecchHHhccCCCCcccccCccCCcccceeeeecCCCCCCcceEEe--cccChHHHHHHHHHHH Q lcl|Aclame:pro 288 TYDQFWWEI-KMGQRTVFVSDVMLRTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVT--HDIRTEQYKEAINQAL 364 (517) Q Consensus 288 ~~s~~~~e~-~~~~~~i~v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~--~dir~e~~~~~l~~~l 364 (517) .--....-. ...++...||++.+....+- .......|.. +..+ .++.++ ..-+.......++.+. T Consensus 282 l~~~~l~~~~~~~~p~~lv~~~g~~~~~~l--------~~~~~g~~v~--g~~~--~v~~~~~~~~~~~~~~~~~i~~~~ 349 (535) T protein:vir:15 282 LQEAIVKMSMISAKVIGLVNPAGITQPRRL--------TKAQTGDFVP--GRRE--DIDFLQLEKQADFTVAKAVSDQIE 349 (535) T ss_pred HHHHHHHHHHHHhcCceeecccccccchhc--------ccCCceeeec--CCcc--cceeeecccccchhHHHHHHHHHH Confidence 776666655 56677777755443221110 0001111221 1122 232332 2223344445555544 Q ss_pred HHHHHHhCCCccccccCCCccchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEE Q lcl|Aclame:pro 365 RTLEMELKLSVGTFSFDGRSMKTATEIVSENDLTYRTRNDHVYE-VEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVD 443 (517) Q Consensus 365 ~~i~~~~g~s~~~~~~~~~~~~TAtei~a~~~~~~~t~~~~~~~-~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~ 443 (517) ..|....=+ ..+...+....|||||..+.+...+...-.-.. -...|.-|+.-++.+....+.... ++...+.++ T Consensus 350 ~~I~~af~~--~~~~~~~~~r~TAtEV~~r~~E~~~~LG~v~~rl~~Ell~Pli~r~~~il~r~g~lP~--~p~~~v~~~ 425 (535) T protein:vir:15 350 ARLSYAFML--NSAVQRTGERVTAEEIRYVASELEDTLGGVYSILSQELQLPLVRVLLKQLQATSQIPE--LPKEAVEPT 425 (535) T ss_pred HHHHHHHhh--hhcccCCCccccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--CCccceeEE Confidence 444332211 122223345579999999998888887653332 333445566555555443333222 223346666 Q ss_pred eCCCccCCHH-HHHHHHHHH---Hh-cC------CCCHHHHHH---hhCCCC-------HHHHHHHHHHHHHhcc---cc Q lcl|Aclame:pro 444 FDDGVFQDRS-ALLRFYGQA---KT-FG------FIPTVEAIQ---RIFKVP-------KKTAEQWLEEIRKDQI---EL 499 (517) Q Consensus 444 f~d~i~~d~~-~~~~~~~~~---~~-~G------~~S~~~~l~---~~~~~~-------eeea~~el~~i~~E~~---~~ 499 (517) |--++..--. ..++..++. ++ .+ .+....++. ...|++ +||.++..++.++.++ .+ T Consensus 426 yis~La~aqr~~~~~~l~~~~~~la~~~P~~ld~~id~d~~~~~~a~~~Gvp~~~i~~~~eev~~~~~q~~~~~~~~~~a 505 (535) T protein:vir:15 426 ISTGLEAIGRGQDLDKLERCISAWAALAPMQGDPDINLAVIKLRIANAIGIDTSGILLTDEQKQALMMQDAAQTGIENAA 505 (535) T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHhcChhhhhccCCHHHHHHHHHHHcCCChhhhcCCHHHHHHHHHHHHHHHHHHHHH Confidence 6544332111 111111111 11 11 122223222 334533 4444444333222111 11 Q ss_pred CCCCCccccCCCCCCCCC Q lcl|Aclame:pro 500 DPVTISQRAQKRMFGDEE 517 (517) Q Consensus 500 ~~~~~~~~~~~~~~G~ee 517 (517) ........+..-.+++.= T Consensus 506 ~~~g~~~~~~~~~~p~~~ 523 (535) T protein:vir:15 506 ATGGAGVGALATSSPEAM 523 (535) T ss_pred HHHHhhccchhccChHHH Confidence 110000001111111110 No 110 >protein:vir:94049 Length: 532 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:1493 # MgeName: OP2 # Cross-refs: genbank:acc:YP_453629;genbank:gi:84662665;genbank:GeneID:5142559 Probab=98.95 E-value=1.1e-08 Score=64.24 Aligned_cols=447 Identities=11% Similarity=0.041 Sum_probs=185.8 Q ss_pred CchHHHHHHH--HHH---HHHHhhccc-----chhhhccccCcCCHHH-HHHHHHHHHHhcCCCcccccccccCcccccc Q lcl|Aclame:pro 1 MKVIQRIKNF--FKR---GGYALSGQT-----LKSINDHEKINIDPNE-LARIERNLRQYEGDYPQVEYINSQGKIQERD 69 (517) Q Consensus 1 m~~~~~ik~~--~~~---~~~~~~~~~-----~~~~~~~~~i~~~~~~-~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~ 69 (517) .+.-+++++- -++ +.....+.+ .....-+..++++.-+ -.+-..+...| +.+..+ .+-....- T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~-~~~~~~-----~~~~l~a~ 90 (532) T protein:vir:94 17 LQQAQRVDAKRATHTSLGLATAHEIDPTAYSPYERNAAQNAMAMDYGLQTGRNGRNALSF-VEATSW-----PGFPTLAL 90 (532) T ss_pred hhhHhhhhhhhhhhhhhhhhhhhhhcccccccccccccccccccccccCccccccccccc-cccccc-----chHHHHHH Confidence 2222222210 000 000000000 0000000111111000 00000111011 000000 00000011 Q ss_pred ccccChHHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe Q lcl|Aclame:pro 70 YMTLNLRKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD 149 (517) Q Consensus 70 ~~~ln~~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d 149 (517) .....+++.+|+..|+-++.+..+|+.++.... .......|...++.-++...+.+++..+-.+|++++-+-++ T Consensus 91 Y~~~~l~r~~Vd~~aed~~r~~~~i~~~~~~~~------~~~~~~~i~~~~~~l~v~~~l~~a~~~~rlyG~a~i~i~v~ 164 (532) T protein:vir:94 91 LAQLPEYRTMHETPADECVRAWGKITCSSKDEL------AADKATRITQKLEQYNVRTLVRTVVIHDQAYGGAHVFPHLK 164 (532) T ss_pred HHcCchhhhhhccchHHHhhCCceEeeCCcccc------chHHHHHHHHHHHhhhHHHHHHHHHHhhhcccceEEEEEec Confidence 234578899999999999999999987553211 11222344544444468889999999999999998777665 Q ss_pred CCeeEEEEEcCCeEEEEEEc---CCceEEEEEEEEEEEE------ecCCcEEEEEEEEEeecceeeccceEEEEEEEeec Q lcl|Aclame:pro 150 NGEIEFSWALANAFYPLRSN---SNGISEGVMKSVTTKV------IGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKS 220 (517) Q Consensus 150 ~g~~~i~~v~a~~~~P~~~~---~~~~~~~a~~~~~~~~------~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~ 220 (517) .......+ +.-.++... .+....-..+...... .+-....|-+- ..|.|. T Consensus 165 ~~~~~~~~---~~p~~l~~~~I~~g~~~~l~vld~~~v~p~~~~~~dp~sp~fg~P------------~~y~v~------ 223 (532) T protein:vir:94 165 MDGDSVPA---DAPLLLSPSFVQRGCLIGFATIEPMWLSPNAYNATDPTLPSFYKP------------DSWIAT------ 223 (532) T ss_pred cCCccccc---cccccccccccccceeeEEEeechheecccccccccccccccCCc------------eeEEEc------ Confidence 32211000 110111000 0000000000000000 00000000000 001110 Q ss_pred CCccccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCC-CCCcchhhhhHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 221 DNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHS-PLGLGITDNSVSTLKKINDTYDQFWWEIKMG 299 (517) Q Consensus 221 ~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~s-plG~S~~~~~~~lid~lD~~~s~~~~e~~~~ 299 (517) -|..| |+ .|. +.+.-.+.|+...+.. -+|+|++..+.+.+..++.+-.....-+... T Consensus 224 -----~g~~i----H~------------SRl-i~f~g~~~p~~~~~~~~~~G~Svlq~~~~~l~~~~~t~~~~~~l~~~~ 281 (532) T protein:vir:94 224 -----SGKKI----HS------------SRI-HTVVGRPVGDMLKAAYSFRGVSISQLAMPYVDNWLRTRQSVSDTVKQF 281 (532) T ss_pred -----cCeee----cc------------ceE-EEecCCCchhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhc Confidence 01111 00 111 1111122333222222 2599999999999999998877777655444 Q ss_pred cceeecchHHhccCCCCcccccC---ccCCcccceeeeecCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCcc Q lcl|Aclame:pro 300 QRTVFVSDVMLRTVPDESGMPPP---QVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVG 376 (517) Q Consensus 300 ~~~i~v~~~~l~~~~~~~~~~~~---~~fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~ 376 (517) +..++.. .+-.-...++..... ..+..-+..+..+-.+.+...+++++.++ ......++.+.+.|+..+|++.. T Consensus 282 ~~~v~k~-~~a~~ls~~~~~~~~~r~~~~~~~~~n~g~~~id~~~e~~e~~~~~l--sgl~~~l~~~~~~iAaa~~IP~t 358 (532) T protein:vir:94 282 SMTNLAT-DMAQLLAPGGAQSLDARLQLFNLYRDNRNIGALDKGTEEIQQTNTPL--SGLDSLQAQSQEQMAAVSHIPLV 358 (532) T ss_pred CCceeee-chHHhhcchhHHHHHHHHHHHHhhcCCccceEEcCCCceeEEEeccc--CCHHHHHHHHHHHHHhHhCCCee Confidence 4444432 111111111111100 00000011111111222334566665443 44566777888889999999766 Q ss_pred c-cccCCCcc-chHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHH Q lcl|Aclame:pro 377 T-FSFDGRSM-KTATEIVSENDLTYRTRNDHV-YEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRS 453 (517) Q Consensus 377 ~-~~~~~~~~-~TAtei~a~~~~~~~t~~~~~-~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~ 453 (517) . ||-..+|. .|+.+ ..+-.+..++.+| ..++..|+.|+..++..+ ++.. ..+++|.|++-...+.. T Consensus 359 ~LfG~sp~GlnstGe~---D~~~yyd~I~s~Qe~~l~p~le~l~~~l~~s~-----~g~~---~~d~~~~f~pL~~~s~k 427 (532) T protein:vir:94 359 KLLGITPNGLNASSDG---EIRVWYDFIAGYQATNLTPLMEWIIDLIQLSE-----YGQI---DPGLAWEWSPLMELDDK 427 (532) T ss_pred eeecCCcccccccchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCC---CCCceEEeCCCCCCCHH Confidence 3 44332333 23332 3344556666655 667888899888776421 2222 24699999987667766 Q ss_pred HHHHH-------HHHHHhcCCCCHHHHHHhhC--C---CCHHH-HHH---HHHHHHHhc-ccc-CCC-CC--ccccCCCC Q lcl|Aclame:pro 454 ALLRF-------YGQAKTFGFIPTVEAIQRIF--K---VPKKT-AEQ---WLEEIRKDQ-IEL-DPV-TI--SQRAQKRM 512 (517) Q Consensus 454 ~~~~~-------~~~~~~~G~~S~~~~l~~~~--~---~~eee-a~~---el~~i~~E~-~~~-~~~-~~--~~~~~~~~ 512 (517) +.++. ..+++.+|++|..++..++- + +.+.- ..+ +.+.+..|. ... +++ +. ...+.++ T Consensus 428 EkAei~~~~a~a~~~~~~~Gvi~~~Evr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 506 (532) T protein:vir:94 428 ELAEVRQLNASTDSTLMELGVIDAKMVQQRLAADPTSGYAGALGERDELDDVEEIAKQLMAAALNPPATAPQTPNPQPD- 506 (532) T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhcCCccccccccccccccccccchhhhhcccccCCCCCCCCCCCCCCC- Confidence 65443 45678889999887654331 1 11110 000 111111111 111 111 11 1111222 Q ss_pred CCCCC Q lcl|Aclame:pro 513 FGDEE 517 (517) Q Consensus 513 ~G~ee 517 (517) ..+|| T Consensus 507 ~~~d~ 511 (532) T protein:vir:94 507 SEDDQ 511 (532) T ss_pred CCCCC Confidence 12333 No 111 >protein:vir:389 Length: 530 # NCBI annotation: gp4 # Family: family:all:47 # MgeID: mge:325 # MgeName: N15 # Cross-refs: genbank:acc:NP_046899;genbank:gi:9630468;genbank:GeneID:1261643 Probab=98.94 E-value=1.2e-08 Score=64.05 Aligned_cols=440 Identities=11% Similarity=0.010 Sum_probs=202.6 Q ss_pred cccchhhhccccCcCCHHHHHHHHHHHHHhcCCCc-------ccccccccC-------c-cccc---cccccChHHHHHH Q lcl|Aclame:pro 20 GQTLKSINDHEKINIDPNELARIERNLRQYEGDYP-------QVEYINSQG-------K-IQER---DYMTLNLRKLSAD 81 (517) Q Consensus 20 ~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~-------~~~~~~~~~-------~-~~~~---~~~~ln~~~~i~~ 81 (517) ||. +.+. .++=......+..||.|-.. |.....+.. . ...| -...-++++.+.+ T Consensus 1 ~~~-------~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~w~~~~~s~~~~i~~~~~~lr~RaRdl~rNn~~a~~av~ 72 (530) T protein:vir:38 1 MKI-------PSLV-GPDGKTSLREYAGYHGGGGGFGGQLRGWNPPSESADAALLPNYSRGNARADDLVRNNGYAANAVQ 72 (530) T ss_pred Ccc-------ceee-cCccccchHHHhhhhcccCCCCCcccccccCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH Confidence 111 0010 01111224556677765421 110000000 0 0000 0112367889999 Q ss_pred HHhhhhcCCcceeEec-Ccc----cccccccchhHHHHHHHHHHh----------hhhHHHHHHHHHHHHHhhCCEEEEE Q lcl|Aclame:pro 82 VLSGLVFNEQCEVYVS-DAK----DEEKKDNSFKTAHEFIQHVFQ----------HNKFIKNLSDYLEPTFALGGLTVRP 146 (517) Q Consensus 82 ~~A~ll~~e~~~i~~~-~~~----~~~~~~~~~~~~~~~l~~~l~----------~n~f~~~~~~~~~~a~~~G~~~~k~ 146 (517) .+.+.+++.-...... +.. +.+...+-.+..++.++...+ ..+|.....-++...+..|.++++. T Consensus 73 ~~~~nvVG~Gi~~~~~p~~~~l~~~~~~~~~~~~~ie~~w~~W~~~~~~~~D~~g~~~f~~~q~l~~r~~~~dGE~~~~~ 152 (530) T protein:vir:38 73 LHQDHIVGSFFRLSYRPSWRYLGINEEDSRAFSRDVEAAWNEYAEDDFCGIDAERKRTFTMMIREGVAMHAFNGELCVQA 152 (530) T ss_pred HHHHHhhCCCceeeeccchhhcCCCHhHHHHHHHHHHHHHHHhhcCCCcEEeeeccCCHHHHHHHHHHHHhhCCceEEEe Confidence 9999999974332221 000 111122222333333333222 1257777777888889999999998 Q ss_pred EEeC--C---eeEEEEEcCCeEE-EEE-EcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEee Q lcl|Aclame:pro 147 YVDN--G---EIEFSWALANAFY-PLR-SNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYK 219 (517) Q Consensus 147 ~~d~--g---~~~i~~v~a~~~~-P~~-~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~ 219 (517) .++. | .+++..+.|+.+- |.. .+.+.+..+|-+ ...+ ...-|.....|.++. T Consensus 153 ~~~~~~g~~~~~~lq~ie~d~l~~~~~~~~~~~i~~GIe~----d~~G-r~~aY~i~~~~~~~~---------------- 211 (530) T protein:vir:38 153 TWDSDSTRLFRTQFKMVSPKRVSNPNNIGDTRNCRAGVKI----NDSG-AALGYYVSDDGYPGW---------------- 211 (530) T ss_pred eeccCCCCccceEEEEechhhcCCCCCCCCCCeeEeeeEE----CCCC-ceEEEEEeeccCCCc---------------- Confidence 8864 2 3789999999853 211 122334444311 1111 111122222221110 Q ss_pred cCCccccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHH-h Q lcl|Aclame:pro 220 SDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIK-M 298 (517) Q Consensus 220 ~~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~-~ 298 (517) . + ..|..++. ...++++-+.|+.. ...++...|+|.|+.++..+..|+.-.+.-..--+ . T Consensus 212 -----~-~------~~~~~~~~---~~~v~a~~vlH~f~----~~r~gQ~RGis~lapvl~~l~~l~~y~dael~~a~i~ 272 (530) T protein:vir:38 212 -----M-A------QNWTYIPR---ELPGGRPSFIHVFE----PMEDGQTRGANAFYSVMEQMKMLDTLQNTQLQSAIVK 272 (530) T ss_pred -----c-c------cccceeee---eeccChhHeEeecc----ccCCCcccCCchHHHHHHHHHHHhHHHHHHHHHHHHh Confidence 0 0 00111111 12345555666643 33457778999999999999999865443332222 2 Q ss_pred ccceeecchHHhccCCCCccc-------------ccCccCCccccee---eeecCC-------CCCCcceEEecccChHH Q lcl|Aclame:pro 299 GQRTVFVSDVMLRTVPDESGM-------------PPPQVFDPDVNVY---KSIRMG-------TDEEFVKDVTHDIRTEQ 355 (517) Q Consensus 299 ~~~~i~v~~~~l~~~~~~~~~-------------~~~~~fd~~~~~y---~~~~~~-------~~~~~v~~~~~dir~e~ 355 (517) +--..|| ++..+..+. .....+......+ ..+.+. ..+..|+.++|.-+..+ T Consensus 273 A~~a~fi-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pG~i~~L~pGe~i~~~~p~~p~~~ 347 (530) T protein:vir:38 273 AMYAATI-----ESELDTQSAMDFILGADNKEQQSKLTGWLGEMAAYYSAAPVRLGGARVPHLLPGDSLNLQSAQDTDNG 347 (530) T ss_pred hhheeee-----eccCCccccccccccCCcccccccccccchhhhhcccccceeccCceeeecCCCCeeeeeCCCCCCCC Confidence 2223333 211111000 0000000000000 000111 23445888998888888 Q ss_pred HHHHHHHHHHHHHHHhCCCccccccCCCcc--chHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhh---c Q lcl|Aclame:pro 356 YKEAINQALRTLEMELKLSVGTFSFDGRSM--KTATEIVSENDLTYRTRNDHVYEVEQ-FIKGLVISVLELAKTYK---L 429 (517) Q Consensus 356 ~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~--~TAtei~a~~~~~~~t~~~~~~~~~~-al~~li~~il~~~~~~~---~ 429 (517) +..-...+++.|....|+++..++-|-+++ .++-.......+++..+ |..+.. .+..+.+..+..+-..+ + T Consensus 348 ~~~f~~~~lr~iaaglGi~ye~lt~D~s~~nYSS~R~~~~e~~r~~~~~---q~~~~~~~~~pi~~~wl~~av~~G~i~~ 424 (530) T protein:vir:38 348 YSTFEQSLLRYIAAGLGVSYEQLSRNYSQMSYSTARASANESWAYFMGR---RKFVASRQACQMFLCWLEEAIVRRVVTL 424 (530) T ss_pred HHHHHHHHHHHHHhhcCCCHHHHhcccccccHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHHHHHHHHcCCccC Confidence 888888999999999999999997664322 23333333333344333 333322 22222222222111101 1 Q ss_pred cCCCCCCc-------cceEEEeCCCccCCHHHHHHHHHHHHhcCCCCHHHHHHhhCCCCHHHHHHHHH----HHHHhccc Q lcl|Aclame:pro 430 FGGEIPSA-------EHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTVEAIQRIFKVPKKTAEQWLE----EIRKDQIE 498 (517) Q Consensus 430 ~~~~~~~~-------~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~~~l~~~~~~~eeea~~el~----~i~~E~~~ 498 (517) .++...+. ..+.....--..+|+.++++.....+.+|+.|.++.+++. |.+-++..++++ ++++-... T Consensus 425 p~~~~~~~~~~~~a~~~~~w~~p~~~~iDP~Ke~~a~~~~i~~G~~s~~~~~a~~-G~D~~~v~~q~a~e~~~~~~~Gl~ 503 (530) T protein:vir:38 425 PSKARFSFQEARTAWGNANWIGSGRMAIDGLKEVQEAVMLIEAGLSTYEKECAKR-GDDYQEIFAQQVRESMERRAAGLN 503 (530) T ss_pred CCCCCCCchhhHHhhhceeeecCCccccChHHHHHHHHHHHHcCCCCHHHHHHHc-CCCHHHHHHHHHHHHHHHHHcCCC Confidence 11110010 1233333555667999999999999999999999988765 766554433332 22221111 Q ss_pred cCCCCCccccC--CCCCCCCC Q lcl|Aclame:pro 499 LDPVTISQRAQ--KRMFGDEE 517 (517) Q Consensus 499 ~~~~~~~~~~~--~~~~G~ee 517 (517) . +......+. .....++| T Consensus 504 ~-~~~~~~~~~~~~~~~~~~~ 523 (530) T protein:vir:38 504 P-PAWAAAAFEAGVKKSNEEE 523 (530) T ss_pred C-CCCcccccCCCCCCCCCCC Confidence 1 111111111 11111111 No 112 >protein:vir:3361 Length: 535 # NCBI annotation: head-to-tail joining protein # Family: family:all:481 # MgeID: mge:67 # MgeName: T3 # Cross-refs: genbank:acc:NP_523332;genbank:gi:17570823;genbank:GeneID:927409 Probab=98.94 E-value=1.2e-08 Score=63.95 Aligned_cols=459 Identities=9% Similarity=-0.008 Sum_probs=193.1 Q ss_pred hHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccChHHHHHHH Q lcl|Aclame:pro 3 VIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLRKLSADV 82 (517) Q Consensus 3 ~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~~~i~~~ 82 (517) |=+..|+-+.+ +.++..-+ .+-.+...-...|+.++.=..|.+-.....+......+.-=..+...++. T Consensus 1 m~~~~~~~~~~-------~~~~~r~~----~l~~~R~~~e~~w~e~~~~~lP~~~~~~~~~~~~~~~~~~dst~~~a~~~ 69 (535) T protein:vir:33 1 MADSKRTGLGE-------DGAKATYD----RLTNDRRAYETRAENCAQYTIPSLFPKESDNESTDYTTPWQAVGARGLNN 69 (535) T ss_pred CChhhhhccCh-------hHHHHHHH----HHHHHhhHHHHHHHHHHHHhcccccCCCCCcccccccccccccHHHHHHH Confidence 11111111110 01110000 00011112244565554332222211111111111112222344555555 Q ss_pred HhhhhcCC--cce----eEecCcccccc---------cccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEE Q lcl|Aclame:pro 83 LSGLVFNE--QCE----VYVSDAKDEEK---------KDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPY 147 (517) Q Consensus 83 ~A~ll~~e--~~~----i~~~~~~~~~~---------~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~ 147 (517) +|+-|++- |++ +.+++....+. .....+...+.+...+..++|...+.++..+..++|.+.+..- T Consensus 70 Laa~l~~~ltP~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~l~~ve~~~~~~~~~snf~~~~~~~~~~L~~~G~a~l~~~ 149 (535) T protein:vir:33 70 LASKLMLALFPMQSWMKLTISEYEAKQLVGDPDGLAKVDEGLSMVERIIMNYIESNSYRVTLFECLKQLIVAGNALLYLP 149 (535) T ss_pred HHHHHHHhhcCCCcccccccChHHHhccccCcchHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCceeEEee Confidence 55544332 222 22222211111 0111223334455568889999999999999999999888765 Q ss_pred EeC-CeeEEEEEcCCeEEEEEEcCCceEEEEEEEEEEEE-------------------ecCCcEEEEEEEEEeecceeec Q lcl|Aclame:pro 148 VDN-GEIEFSWALANAFYPLRSNSNGISEGVMKSVTTKV-------------------IGNKTVYYTLLEFHEWEKTEEG 207 (517) Q Consensus 148 ~d~-g~~~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~-------------------~~~~~~~yt~lE~h~~~~~~~~ 207 (517) .++ +.+++..+|-..++- ..|..+....+|....... ..+...+|+++.+. .. T Consensus 150 ~~~~~~~~f~~~pl~~~~v-~~d~~G~vd~i~r~~~~t~~ql~~~~~~~~~~~~~~k~~~~~~~v~~~v~~~------~~ 222 (535) T protein:vir:33 150 EPEGSYNPMKLYRLSSYVV-QRDAYGNVLQIVTRDQIAFGALPEDVRSAVEKSGGEKKMDEMVDVYTHVYLD------EE 222 (535) T ss_pred cCCCCceeeEEEEcCeeEE-eeCCCCCeeEEEeeEeecHHHHHHHhhhhhcccccccccccCCeEEEEEEee------CC Confidence 554 457788899888774 5666666655554322110 01111234333221 11 Q ss_pred cceEEEEEEEeecCCccccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHH Q lcl|Aclame:pro 208 ESLYVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKIND 287 (517) Q Consensus 208 ~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~ 287 (517) .+.|.+-++++ |..+++..- -.++...||+.+ -.+..+++.||+|--..+.+-++.|+. T Consensus 223 ~~~~~~~~~~~--------~~~~~~~~~---------~~~~~~~P~i~~----Rw~~~~ge~YGrgp~~~~l~D~k~L~~ 281 (535) T protein:vir:33 223 SGDYLKYEEVE--------DVEIDGSDA---------TYPTDAMPYIPV----RMVRIDGESYGRSYCEEYLGDLRSLEN 281 (535) T ss_pred CCcEEEEEEEe--------Ccccccccc---------ccccccCCceee----eeeecCCCccccchHHHHHHHHHHHHH Confidence 12333322222 222221110 011222234333 345566889999999999999999998 Q ss_pred HHHHHHHHH-HhccceeecchHHhccCCCCcccccCccCCcccceeeeecCCCCCCcceEEe--cccChHHHHHHHHHHH Q lcl|Aclame:pro 288 TYDQFWWEI-KMGQRTVFVSDVMLRTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVT--HDIRTEQYKEAINQAL 364 (517) Q Consensus 288 ~~s~~~~e~-~~~~~~i~v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~--~dir~e~~~~~l~~~l 364 (517) .--....-. ...++...||++.+....+- .......|.. +..+ .++.++ ..-+.......++.+. T Consensus 282 l~~~~l~~~~~~~~p~~lv~~~g~~~~~~~--------~~~~~g~~v~--g~~~--~v~~~~~~~~~~~~~~~~~i~~~~ 349 (535) T protein:vir:33 282 LQEAIVKMSMISAKVIGLVNPAGITQPRRL--------TKAQTGDFVP--GRRE--DIDFLQLEKQADFTVAKAVSDQIE 349 (535) T ss_pred HHHHHHHHHHHHhcCceeeccccccchhhc--------ccCCceeeec--CCcc--cceeeecccccchhHHHHHHHHHH Confidence 776666655 56677777755443221110 0011111221 2122 232332 2223344445555544 Q ss_pred HHHHHHhCCCccccccCCCccchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEE Q lcl|Aclame:pro 365 RTLEMELKLSVGTFSFDGRSMKTATEIVSENDLTYRTRNDHVYE-VEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVD 443 (517) Q Consensus 365 ~~i~~~~g~s~~~~~~~~~~~~TAtei~a~~~~~~~t~~~~~~~-~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~ 443 (517) ..|....=+ ..+...+....|||||..+.+...+...-.-.. -...|.-|+.-++.+....+.... ++...+.++ T Consensus 350 ~~I~~af~~--~~~~~~~~~r~TAtEV~~r~~E~~~~LG~v~~rl~~Ell~Pli~r~~~il~r~g~lP~--~p~~~v~~~ 425 (535) T protein:vir:33 350 ARLSYAFML--NSAVQRTGERVTAEEIRYVASELEDTLGGVYSILSQELQLPLVRVLLKQLQATSQIPE--LPKEAVEPT 425 (535) T ss_pred HHHHHHHhh--hhcccCCCccccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--CCccceeEE Confidence 444332211 122223345579999999998888887653332 333445566555555443333222 233346666 Q ss_pred eCCCccCCHH-HHHHHHHHH---Hh-cC------CCCHHHHH---HhhCCCC-------HHHHHHHHHHHHHhcc---cc Q lcl|Aclame:pro 444 FDDGVFQDRS-ALLRFYGQA---KT-FG------FIPTVEAI---QRIFKVP-------KKTAEQWLEEIRKDQI---EL 499 (517) Q Consensus 444 f~d~i~~d~~-~~~~~~~~~---~~-~G------~~S~~~~l---~~~~~~~-------eeea~~el~~i~~E~~---~~ 499 (517) |--++..--. ..++..++. ++ .+ .+....++ ....|++ +||.++..++..+.+. .+ T Consensus 426 yis~La~aqr~~~~~~l~~~~~~la~~~P~~~d~~id~d~~~~~~a~~~Gvp~~~i~~~~ee~~~~~~q~~~~~~~~~~~ 505 (535) T protein:vir:33 426 ISTGLEAIGRGQDLDKLERCISAWAALAPMQGDPDINLAVIKLRIANAIGIDTSGILLTDEQKQALMMQDAAQTGVENAA 505 (535) T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHhhChhhhhccCCHHHHHHHHHHHcCCCHhHhcCCHHHHHHHHHHHHHHHHHHHHH Confidence 6544332111 111111111 11 10 12222322 2334543 3333333222111110 00 Q ss_pred CCCCCccccCCCCCCCCC Q lcl|Aclame:pro 500 DPVTISQRAQKRMFGDEE 517 (517) Q Consensus 500 ~~~~~~~~~~~~~~G~ee 517 (517) ...+... ...-..|=+- T Consensus 506 ~~~g~~~-~~~~~~~~~~ 522 (535) T protein:vir:33 506 AAGGAGV-GALATSSPEA 522 (535) T ss_pred Hhhhhhh-cchhhcCChh Confidence 1000000 0011111111 No 113 >protein:vir:3139 Length: 599 # NCBI annotation: hypothetical protein # Family: family:all:1548 # MgeID: mge:64 # MgeName: VpV262 # Cross-refs: genbank:acc:NP_640321;genbank:gi:21234402;genbank:GeneID:956054 Probab=98.92 E-value=5.7e-09 Score=65.80 Aligned_cols=465 Identities=8% Similarity=-0.016 Sum_probs=193.4 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCH-----------HHHHHHHHHHHHhcCCCcccccccccCcccccc Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDP-----------NELARIERNLRQYEGDYPQVEYINSQGKIQERD 69 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~-----------~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~ 69 (517) |++--+--+-+ ++..-+ .-.++. .-....++|+..|.=-..-.++..++.+...+. T Consensus 1 m~~~~~~~~~~-----------~~~~~~--~~~~~~~v~~~~~~~~~~r~~~~~~w~e~~~yi~~~~tr~t~~~~~~w~~ 67 (599) T protein:vir:31 1 MSTDIKTLQKM-----------LEGRDD--DRAFIDELVVLFTNMENARAQKDREDKELMDYIDATDTRKTSNSKLPFKN 67 (599) T ss_pred CccchHHHHHH-----------hhccCc--hHHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhhcccccccCCCCccc Confidence 33211111100 000000 000000 001112233322210000112223333444444 Q ss_pred ccccChHHHHHHHHhhhhcC----CcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEE Q lcl|Aclame:pro 70 YMTLNLRKLSADVLSGLVFN----EQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVR 145 (517) Q Consensus 70 ~~~ln~~~~i~~~~A~ll~~----e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k 145 (517) +.++|-...|+..+...+++ .+-=+-+.+...+...++.....+.+++.-|...+|...+..++-+-...|.++.+ T Consensus 68 s~t~~k~~~~~~~l~a~~~~~~fp~~~w~d~~~~~~~~~~~~~~~~i~~yi~~Kl~e~~~~~~~~~~v~d~i~~G~~vat 147 (599) T protein:vir:31 68 STTINKLAHLHLMITTSYMEHLLPNRNWVDFVGFDNDSVNAEKREIARSYVRGKVEASNLEGVIERMVDDFAVRGFCVAH 147 (599) T ss_pred ccchHHHHHHHHHHHHHHHhhhcCCccceEeeecCCchhHHHHHHHHHHHhhhhhhhcchHHHHHHHHhhhcccCceeEe Confidence 44444334444444443332 22113333333333344444555566666677788999998888899999988777 Q ss_pred EEEe-------CC-------eeEEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEe-------c-CCcEEEEE-------- Q lcl|Aclame:pro 146 PYVD-------NG-------EIEFSWALANAFYPLRSNSNGISEGVMKSVTTKVI-------G-NKTVYYTL-------- 195 (517) Q Consensus 146 ~~~d-------~g-------~~~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~-------~-~~~~~yt~-------- 195 (517) +-+. +| +|+++-|+|..+|| .-+...+..++|+.+...+- . +...+|.. T Consensus 148 ~~~er~~~~~~d~~v~~~~~~P~~ervsP~Di~~-Dp~A~si~d~~fivRs~~Tk~~L~~l~~~~~~~~y~~d~~~~~~~ 226 (599) T protein:vir:31 148 TRHVKRMTVTAENQVIKNYSGTVTERLSPSDVFW-DVTADSLPKAAKCIRQLYTLGSLKREIEEGTFPLMSMEDFQKLRE 226 (599) T ss_pred eeEEEcceeecccccccccccceEEeecccceee-CCCCCCCCcceeeeehhhhHHHHHHHhccCCccccchHHHHHHHh Confidence 6543 22 48899999999997 22233344444443322210 0 00011110 Q ss_pred EEEEeeccee------------eccceEEEEEEEeecCCccccCcccccccccC--------CCCcceEE--c------- Q lcl|Aclame:pro 196 LEFHEWEKTE------------EGESLYVITNELYKSDNEGEIGKRIPLEELYE--------GMQEKTYI--Q------- 246 (517) Q Consensus 196 lE~h~~~~~~------------~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~--------~l~~~~~~--~------- 246 (517) -.+|+..... ..++.|.|.+ +|.+ -+|..=+.|. .+.+++.+ . T Consensus 227 ~~~~~~~~~~d~~~~~~g~D~~~~d~~~~~~e-Y~~~-------~~VevLeywGd~ydee~d~~~~~~ViTi~g~~~liR 298 (599) T protein:vir:31 227 ERRTIREALADGYNGRRKFDSLHKKGYGSMMN-YINE-------GVVEVLTFMGDFYDEENDELWNNYEITVIDRKIIGR 298 (599) T ss_pred hccCCCccccchhhhhhhccccccccccchhh-hccc-------chhhhhhhhhhhhcccCCccccceEEEEecCcEEee Confidence 0111100000 0011121110 0100 0111111111 11111111 1 Q ss_pred ------CCC-cceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHh-ccceeecchHHhccCCCCcc Q lcl|Aclame:pro 247 ------GLS-RPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKM-GQRTVFVSDVMLRTVPDESG 318 (517) Q Consensus 247 ------g~~-~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~-~~~~i~v~~~~l~~~~~~~~ 318 (517) ..+ +|...+--.| +..+.||.+++..+.++++.||.++....+.++. ..+ +. ...++-.+ T Consensus 299 ~e~np~~~g~~Pyvv~~~~P-----~~~~~yG~G~l~~~~gaQ~~lN~~~Ng~iD~~~~~l~p-~l------~~~~dl~~ 366 (599) T protein:vir:31 299 KQSKDTWDGSQNLHIAVYEF-----QKDTLCPIGPLHRLTGMQYKLDKRENFREDLHDRFLHP-SL------KKVGDVRE 366 (599) T ss_pred cccCCCCCCCCCeEEEEeee-----eccccCCCCCchhcchHHHHHHHHHHHhhhhhhhhhcc-cc------cccccccc Confidence 112 2432222112 2357899999999999999999998887776642 222 22 11111111 Q ss_pred cccCccCCcccceeeeecCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHHHHHHHHH Q lcl|Aclame:pro 319 MPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVSENDLT 398 (517) Q Consensus 319 ~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a~~~~~ 398 (517) .. ..+.+.. ++.. ++.+.++.+.|..++-+..--++.+.......+|.++...|..+.|..||+++...-..- T Consensus 367 eD--~~~~P~~-v~~~----~d~~~vq~~~p~s~~~~a~~~is~~e~~mee~sGvp~~~~G~~~ag~~TA~~is~l~naa 439 (599) T protein:vir:31 367 KG--MRGGPNH-VFEV----EETGDVQYMTPPAEVLQPDNQLSITLQLMEDLSGAPKESIGQRTAGEKTKFEVQLLDQGQ 439 (599) T ss_pred cC--ccCCCCc-ceee----cCCCccccccCchhhhhHHHHHHHHHHHHHHhhccchhhcCCcccchhhHHHHHHHHhhh Confidence 00 0111111 1111 234446666666544333334555555567788999999998888889999997776655 Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhccCCCCCCccceEEE------e----CCC-------cc------CCHHH Q lcl|Aclame:pro 399 YRTRNDHVYEVEQFIKG-LVISVLELAKTYKLFGGEIPSAEHIGVD------F----DDG-------VF------QDRSA 454 (517) Q Consensus 399 ~~t~~~~~~~~~~al~~-li~~il~~~~~~~~~~~~~~~~~~v~i~------f----~d~-------i~------~d~~~ 454 (517) -..+..+.+.|...+-+ |++.++++...+ ... ++...+.+. | .+. ++ ...+. T Consensus 440 ~~~~~~~vr~~e~~~lepll~~l~e~~~~f--~D~--~~tiri~~~e~~~~~f~~i~redl~~~~~~v~~Ga~~v~ere~ 515 (599) T protein:vir:31 440 NKVFRRKVKKFERELLTPVLNDYLEQGRNH--LDA--SDTIKTFNSELGTATFLDITADDLNLNGQMVAQGATLFAEKAN 515 (599) T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccc--ccceeeecccccceeeEEeehhhhhCCeeeeechhhHHHHHHH Confidence 55556667777765544 888888776532 111 111111110 0 000 11 11111 Q ss_pred HHHHHHHHHhc--C--C---CCHHH---H---HHhhCCCC---------HHHHHHHHHHH--HHhcc-c---cCCCCCcc Q lcl|Aclame:pro 455 LLRFYGQAKTF--G--F---IPTVE---A---IQRIFKVP---------KKTAEQWLEEI--RKDQI-E---LDPVTISQ 506 (517) Q Consensus 455 ~~~~~~~~~~~--G--~---~S~~~---~---l~~~~~~~---------eeea~~el~~i--~~E~~-~---~~~~~~~~ 506 (517) ..+...+...+ | + |+.++ . +..++.+. +.|.+..+.++ ++++. + .+-...+. T Consensus 516 ~~q~l~~il~~~~~q~~~P~~~~k~l~~~l~~~~~l~~~~~~~~~va~~eqq~~~~m~Q~~lq~~~~~~~~~~~~~~~~~ 595 (599) T protein:vir:31 516 TLQNLNAILGGPLGAALAPHMSRTKLFNAVEYLGDLDAYGIFTFGIGVQEDQQLARMAQKSTQQTEETALTQEEVGGPTT 595 (599) T ss_pred HHHHHHHHhcccCCCccchhhHHHHHHHHHHHHHhccccccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhhhcCCCCc Confidence 12222222211 1 1 33321 1 22233221 12222222221 12111 1 11111122 Q ss_pred ccCC Q lcl|Aclame:pro 507 RAQK 510 (517) Q Consensus 507 ~~~~ 510 (517) +.+. T Consensus 596 ~~~~ 599 (599) T protein:vir:31 596 DTGQ 599 (599) T ss_pred ccCC Confidence 2222 No 114 >protein:vir:81152 Length: 411 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1892 # MgeName: Geobacillus virus E2 # Cross-refs: genbank:acc:YP_001285809;genbank:gi:148747730;genbank:GeneID:5247195 Probab=98.88 E-value=2.1e-08 Score=62.62 Aligned_cols=393 Identities=12% Similarity=0.062 Sum_probs=174.3 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccC----hH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLN----LR 76 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln----~~ 76 (517) ||||++|++++++-.. .+.++. ..|..|..+.. +.. +..+... -- T Consensus 1 MG~~~~~~~~~~~~~~--------------~~~~~~------~~~~~~~g~~~--~~~---------~~al~~~~V~~~v 49 (411) T protein:vir:81 1 MGWWSRLTRFFRPRNE--------------TVDMTN------PLLLQWLGVDP--DTP---------RNQLSEATYFACL 49 (411) T ss_pred CchHHHHHhhccCccc--------------ccccch------HHHHHHhcCcc--cCh---------hhhhccHHHHHHH Confidence 9999999998864111 111111 12334554432 110 0001111 11 Q ss_pred HHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHH-HHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeCCee-E Q lcl|Aclame:pro 77 KLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQH-VFQHNKFIKNLSDYLEPTFALGGLTVRPYVDNGEI-E 154 (517) Q Consensus 77 ~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~-~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~g~~-~ 154 (517) ..||+..|++ |..+.-.+.+... ......+...|+. --.......-++.++.+.+..|.+++.+..++|++ . T Consensus 50 ~~Ia~~iA~l----p~~~~~~~~~~~~--~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~~g~~~~ 123 (411) T protein:vir:81 50 KILSESLGKL----PLKMYQKTERGIV--KSDREELYNLLKLRPNPYMTSSVFWSTVEMNRNHYGNAYVWCQYSGPQLQA 123 (411) T ss_pred HHHHHhHhhC----ceeEEEecCCcee--eecccHHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCceEE Confidence 4556666654 3333211111100 1111222333321 11111222334445566777898888887787665 3 Q ss_pred EEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCccccccc Q lcl|Aclame:pro 155 FSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEE 234 (517) Q Consensus 155 i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~ 234 (517) +..++|+.+-|+ .+.++... .....+|+ |..... |..+.+ T Consensus 124 l~~l~~~~v~~~-~~~~~~~~-----------~~~~~~~~-----------------------~~~~~~---g~~~~~-- 163 (411) T protein:vir:81 124 LWILPSQYVTIV-VDDRGLLG-----------EKNAIWYR-----------------------YNDPYD---GKMYVF-- 163 (411) T ss_pred EEEECCceEEEE-EcCccccc-----------ccceEEEE-----------------------EEecCC---ceEEEE-- Confidence 666788877664 22222110 00000110 000000 111110 Q ss_pred ccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhc-cceeec--chHHhc Q lcl|Aclame:pro 235 LYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMG-QRTVFV--SDVMLR 311 (517) Q Consensus 235 ~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~-~~~i~v--~~~~l~ 311 (517) ..--++||+.+.+ .+..+|+|...-+...++.....-.-..+-++.| ++.-++ |..+ T Consensus 164 --------------~~~eiih~k~~~~----~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l-- 223 (411) T protein:vir:81 164 --------------RNDEILHFKTSVT----FDGITGLSVRDVLKHTVDGALESQKFMNNLYKTGLTGKAVLEYTGDL-- 223 (411) T ss_pred --------------ccccEEEEcCCCC----CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCC-- Confidence 0001456653211 2345799999888887777665544444555654 344333 2111 Q ss_pred cCCCCcccccCccCCcccceeeeec------CCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCcc Q lcl|Aclame:pro 312 TVPDESGMPPPQVFDPDVNVYKSIR------MGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSM 385 (517) Q Consensus 312 ~~~~~~~~~~~~~fd~~~~~y~~~~------~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~ 385 (517) .+.........|.. .|.+.+ .-+++..++.++......+..+..+...++|+...|++|..+|...++. T Consensus 224 --~~e~~~~~~~~~~~---~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t 298 (411) T protein:vir:81 224 --NQEARDRLVKGFEQ---FANGSKNAGKIIPVPLGMKLVPLDIKLTDSQFFELKKYTALQIAAAFGIKPNQINDYEKSS 298 (411) T ss_pred --CHHHHHHHHHHHHH---HhcCccccCCceecCCCceEEEccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCC Confidence 00000000001100 111111 0022223444554445566777777778899999999999998655432 Q ss_pred -chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC-CCCCccceEEEeCCCccCCHHHHHHHHHHHH Q lcl|Aclame:pro 386 -KTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGG-EIPSAEHIGVDFDDGVFQDRSALLRFYGQAK 463 (517) Q Consensus 386 -~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~-~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~ 463 (517) .++.+. ....++.+|.-++..|....+. .++.. .......+.++++.-+..|..+.++....++ T Consensus 299 ~~n~e~~-------------~~~f~~~~l~P~~~~ie~~l~~-~ll~~~~~~~~~~~~fd~~~ll~~d~~~~~~~~~~~~ 364 (411) T protein:vir:81 299 YASAEAQ-------------NLAFYVDTLLYVLKQYEEEITY-KILSNDLISQGHYFKFNVNVILRADIKTQMDSLSTAV 364 (411) T ss_pred chhHHHH-------------HHHHHHHHHHHHHHHHHHHHHh-hcCChhhcCCCcEEEeechhhhccCHHHHHHHHHHHH Confidence 222211 1222333444444333332221 12211 1123455777777777889999999999999 Q ss_pred hcCCCCHHHHHHhhCCCCHHH-HHHHHHHHHHhccccCCCCCccccCCCCCCCC Q lcl|Aclame:pro 464 TFGFIPTVEAIQRIFKVPKKT-AEQWLEEIRKDQIELDPVTISQRAQKRMFGDE 516 (517) Q Consensus 464 ~~G~~S~~~~l~~~~~~~eee-a~~el~~i~~E~~~~~~~~~~~~~~~~~~G~e 516 (517) .+|+|+.-+++. ..|+...+ .++.+.. ....|... -..+...+||= T Consensus 365 ~~g~~t~NE~R~-~~gl~p~~ggD~~~~~-----~n~~pl~~-~~~~~~kgGd~ 411 (411) T protein:vir:81 365 QNGIMTPNEARD-YLDMPADDYGNNLMAN-----GNYIPLSM-LGANYGKGGDS 411 (411) T ss_pred hCCCcCHHHHHH-HhCCCCCCCCCeeeec-----cCccchhh-hhhhhccCCCC Confidence 999999999764 44654321 1111100 00000000 00011122222 No 115 >protein:vir:63755 Length: 547 # NCBI annotation: gp14 # Family: family:all:2446 # MgeID: mge:1517 # MgeName: P100 # Cross-refs: genbank:gi:82547619;genbank:GeneID:3783506 Probab=98.86 E-value=2.5e-08 Score=62.30 Aligned_cols=441 Identities=10% Similarity=0.081 Sum_probs=179.7 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHH---------------HhcC---CCccccccccc Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLR---------------QYEG---DYPQVEYINSQ 62 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~---------------~Y~g---~~~~~~~~~~~ 62 (517) ||+|++++..++..-..+ ..+ .+++...+++-.-+.+.++.... +..| ++.+..+.... T Consensus 1 ~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~ 77 (547) T protein:vir:63 1 MGLFESIRLAGVNKSDAV--KHI-EVDDNYSIAIQQREQEQISKAMNNKEVAYSQPVIGSMSANPGFKTKPSIRNNQDLH 77 (547) T ss_pred CchhhhhhhhcCCccccc--ccc-ccccccchhhhhhhHHHHHHhhcccchhhhchhhheeecccccccCCccCChhHHH Confidence 999999888765221110 000 11222223333333333333210 0011 11111100000 Q ss_pred CccccccccccChHHHHHHHHhhhhcC--Ccc---------eeEecCcc--cccccccchhHHHHHHHHHHhh-----hh Q lcl|Aclame:pro 63 GKIQERDYMTLNLRKLSADVLSGLVFN--EQC---------EVYVSDAK--DEEKKDNSFKTAHEFIQHVFQH-----NK 124 (517) Q Consensus 63 ~~~~~~~~~~ln~~~~i~~~~A~ll~~--e~~---------~i~~~~~~--~~~~~~~~~~~~~~~l~~~l~~-----n~ 124 (517) . --+.....++...+++..|+.+.. .+. .|.+.+.. .............++|....-+ .. T Consensus 78 ~--l~~~~~~npiv~~~I~~~a~~ia~~~~~~~~~~~~~~~~ir~k~~~~~~~~~~~~~~~~l~~~l~~pn~~~~p~~~s 155 (547) T protein:vir:63 78 G--VLKKFGGNIILNAIINTRSNQVSMYCKPARHSEKGVGFEVRLKDLDKKPTSHDEATIKRIESFIEKTGVDNDINRDS 155 (547) T ss_pred H--HHHHhhcCHHHHHHHHHHHHHHhhhhhhhhhhccCCCceeEecccccccChhhHHHHHHHHHHHHhhCCCCCCccch Confidence 0 000111223444444444443321 111 22222111 0000111111222333322111 12 Q ss_pred HHHHHHHHHHHHHhhCCEEEEEEEe-CCee-EEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeec Q lcl|Aclame:pro 125 FIKNLSDYLEPTFALGGLTVRPYVD-NGEI-EFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWE 202 (517) Q Consensus 125 f~~~~~~~~~~a~~~G~~~~k~~~d-~g~~-~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~ 202 (517) |..-++.++.+.+..|.+++-+..| +|++ .+..++|..+-++...++.... ...+|.. . .. T Consensus 156 ~~~f~~~lv~d~ll~Gn~~~~i~rd~~G~~~~L~~l~p~~V~~~~~~~g~~~~-------------~~~~y~~--~--~~ 218 (547) T protein:vir:63 156 FSSFVKKIVRDTYMYDQVNFEKVFNRNQSMVRFVAKDPTTIFFATTADGKIPD-------------NGNRFVQ--V--ID 218 (547) T ss_pred HHHHHHHHHHHHHhhCCEEEEEEECCCCcEEEEEEecCceeEEEECCcccccc-------------CceEEEE--E--cC Confidence 3445566777888889888887776 4554 4788888888775332221110 0111100 0 00 Q ss_pred ceeeccceEEEEEEEeecCCccccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHH Q lcl|Aclame:pro 203 KTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTL 282 (517) Q Consensus 203 ~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~li 282 (517) +... ..++ +.+ ++||+.+ +.......++|+|.+.-+...| T Consensus 219 ------~~~~---------------~~~~--------~~e----------iih~r~n-~~~~~~~~~~G~Spi~~~~~~i 258 (547) T protein:vir:63 219 ------QKIV---------------ATFN--------ARE----------MAFAVRN-PRSDIYATGYGYPELEIALKQF 258 (547) T ss_pred ------CcEE---------------EEec--------ccc----------EEEeccc-CCCCcccccccccHHHHHHHHH Confidence 0000 0000 001 2334321 0011123568999998888777 Q ss_pred HHHHHHHHHHHHHHHhc-cce--eecchHHhccCCCCcccccCccCCcccceeeeec-------CCCCCCcceEEecccC Q lcl|Aclame:pro 283 KKINDTYDQFWWEIKMG-QRT--VFVSDVMLRTVPDESGMPPPQVFDPDVNVYKSIR-------MGTDEEFVKDVTHDIR 352 (517) Q Consensus 283 d~lD~~~s~~~~e~~~~-~~~--i~v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~-------~~~~~~~v~~~~~dir 352 (517) .....+-.-..+-|+.| ++. |.++...- ..+..-......|. ..|.+.. ...++-.++.++.... T Consensus 259 ~~~~~a~~~~~~~f~Ng~~p~giL~~~~~~~--ls~e~~~~lk~~~~---~~~~G~~nagk~~vl~~~g~~~~~l~~~~~ 333 (547) T protein:vir:63 259 IAHENTEAFNDRFFSHGGTTRGILQIKAAQQ--QSQHALEIFKREWK---NSLSGINGSWQIPVVSAEDVKFVNMTPSAR 333 (547) T ss_pred HHHHHHHHHHHHHHHcCCCcceEEEecCCCC--CCHHHHHHHHHHHH---HHhcCcccccccccccCCCceEEEcCCChh Confidence 76654443334445665 344 33322110 00000000001110 0121111 1122223445555556 Q ss_pred hHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhccC Q lcl|Aclame:pro 353 TEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVSENDLTYRTRND-HVYEVEQFIKGLVISVLELAKTYKLFG 431 (517) Q Consensus 353 ~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a~~~~~~~t~~~-~~~~~~~al~~li~~il~~~~~~~~~~ 431 (517) ..++.+..+...+.|+...|++|..+|+...+..++.+..+.. +.++.. ....++.+|.-++..|....+. .++. T Consensus 334 d~qfle~~~~~~~~Ia~afgVPP~~lG~~~~~~~~~~~~~s~t---~sn~e~~~~~~~~~tL~P~~~~ie~~ln~-~L~~ 409 (547) T protein:vir:63 334 DMEFEKWLNYLINVISALYGIDPAEINIPNNGGATGSKGGSLN---EGNSAEKNQASKNKGLQPLLGFIEDFINK-HIVA 409 (547) T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHcCcccccccccccccccc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHh-hccc Confidence 7778888888889999999999999997654332222221111 111111 2234455555555555443322 1221 Q ss_pred CCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCCHHHHHHhhCCCCH--HHHHHHH-------------------- Q lcl|Aclame:pro 432 GEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTVEAIQRIFKVPK--KTAEQWL-------------------- 489 (517) Q Consensus 432 ~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~~~l~~~~~~~e--eea~~el-------------------- 489 (517) . ....+.+.|+.....+.. +...+.+++.+|+|+.-+++.+ .|+.. +..+.-+ T Consensus 410 ~---~~~~~~~~f~~~~~~~~~-~~~~~~~~~~~g~lT~NE~R~~-~gl~P~~egGD~~~~~~~~~~~~~~~~~~~~~~~ 484 (547) T protein:vir:63 410 E---FGDKYTFQFVGGDIKSEL-ESVKILAEKAKVAMTVNEVRKE-LNLPGDVIGGDIPLNGVIVQRIGQLMQQEQFEHE 484 (547) T ss_pred c---cCCceEEEeeccccccHH-HHHHHHHHHhCCCcCHHHHHHH-hCCCCCCCCCceeecccccccccccccccCCccc Confidence 1 123467788776666644 4445667778899999997654 35432 1111000 Q ss_pred ------HHHHHhccc-cCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 490 ------EEIRKDQIE-LDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 490 ------~~i~~E~~~-~~~~~~~~~~~~~~~G~ee 517 (517) ..+.+.... ..+.+.++.......|+.+ T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (547) T protein:vir:63 485 KQQSNLQMLQEQTGNRVSTDVEDIPDGKDTTGDIG 519 (547) T ss_pred cchhhccccccccCCCCCCCCCCCCCCcccCCCcC Confidence 000000000 0111111111111122211 No 116 >protein:vir:95315 Length: 559 # NCBI annotation: putative head-to-tail-joining protein # Family: family:all:481 # MgeID: mge:1564 # MgeName: phiV10 # Cross-refs: genbank:acc:YP_512261;genbank:gi:89152428;genbank:GeneID:3952984 Probab=98.84 E-value=3e-08 Score=61.83 Aligned_cols=479 Identities=9% Similarity=0.033 Sum_probs=197.2 Q ss_pred hHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccc-ccc-Cc-cccccccccChHHHH Q lcl|Aclame:pro 3 VIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYI-NSQ-GK-IQERDYMTLNLRKLS 79 (517) Q Consensus 3 ~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~-~~~-~~-~~~~~~~~ln~~~~i 79 (517) |-++.+.-+++....+. .+-......|+.+|.=..|.+-.. ..+ +. .++..+..-+.+... T Consensus 1 m~~~~~~~l~~r~~~l~----------------~~R~~~e~~w~e~~~~~lP~~~~~~~~~~~~~~~~~~~~~dst~~~a 64 (559) T protein:vir:95 1 MAETTKERLNKQFAQLE----------------SERQSFEPHWRELSDYINPRGSRFLTSEVNRNDRRNTRIIDSTGTMA 64 (559) T ss_pred CChhhHHHHHHHHHHHH----------------HHhhHHHHHHHHHHHHhccccCCcCCCCCCcccccccccccchHHHH Confidence 33433333332221111 111123355665543222211111 111 01 111222233445555 Q ss_pred HHHHhhhhcCCc-------ceeEecCccccccc--ccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeC Q lcl|Aclame:pro 80 ADVLSGLVFNEQ-------CEVYVSDAKDEEKK--DNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDN 150 (517) Q Consensus 80 ~~~~A~ll~~e~-------~~i~~~~~~~~~~~--~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~ 150 (517) ++.+|+-|++-. -.+.++++...+.. ....+...+.+...+..++|...+.++..+..++|.+.+.+-.|. T Consensus 65 ~~~Las~l~~~ltpp~~~WF~l~~~d~~~~e~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~Gta~l~~~~d~ 144 (559) T protein:vir:95 65 ARTLASGMMSGITSPARPWFRLATPDPEMMDYGPVKLWLEAVQNRMNDMFNKSNLYQSLPQLYGSLGTYSTGAMAVLDDD 144 (559) T ss_pred HHHHHHHHHHhhcCCCCcccccccCCccccchHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCceeeEeecCC Confidence 556655444321 11333333222111 111223334455678888999999999999999999988655554 Q ss_pred -CeeEEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEE--EEEEE---eecceeeccceEEEEEEEeecCCcc Q lcl|Aclame:pro 151 -GEIEFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYT--LLEFH---EWEKTEEGESLYVITNELYKSDNEG 224 (517) Q Consensus 151 -g~~~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt--~lE~h---~~~~~~~~~~~y~I~n~ly~~~~~~ 224 (517) +.+++..++...++- ..|..+....+|.. +..+...-...|- .|--. .++. ...+..+.|.|.+|-..+.+ T Consensus 145 ~~~~r~~~~~l~~~~v-~~d~~G~vd~i~r~-~~~t~~ql~~~fg~~~l~~~~~~~~~~-~~~~~~v~v~~~V~pr~~~~ 221 (559) T protein:vir:95 145 EDIIRTMPFPIGSYYL-ANSPRGSVDTCFRK-FSMTVRQLVQEFGLNNVSESVKSMWES-GTYEKWIEVMHSVYPNIDRD 221 (559) T ss_pred CceeEEEEeecCeEEE-eeCCCCCeEEEEEe-EecCHHHHHHHcCcccCCHHHHHHHhc-CCCCCeEEEEEEEecccccc Confidence 457888999999885 55666665555432 1111100000000 00000 0000 00001122333333111100 Q ss_pred --c-cCcccccccccCC--CCcc--eEEcCCCcceEEEecCCccccccCCCCCCcc-hhhhhHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 225 --E-IGKRIPLEELYEG--MQEK--TYIQGLSRPLFNYLKPSGFNNINPHSPLGLG-ITDNSVSTLKKINDTYDQFWWEI 296 (517) Q Consensus 225 --~-lG~~v~l~~~~~~--l~~~--~~~~g~~~p~f~~~~~~~~N~~~~~splG~S-~~~~~~~lid~lD~~~s~~~~e~ 296 (517) . -....|..++|-. .... ....|+..-||+.+ ..+...++.||+| --..+.+-++.|+..--....-. T Consensus 222 ~~~~~~~~~pf~s~~~e~~~~~~~~l~esg~~e~P~~~~----Rw~~~~ge~YGrg~P~~~al~d~k~L~~l~~~~l~~~ 297 (559) T protein:vir:95 222 TSKLDSKNKPFKSVYYEVGGDNDKLLRESGFDEFPIMAP----RWEVNGEDVYGSSCPGMLALGPVKALQLLQKRKSQLI 297 (559) T ss_pred ccccccccceEEEEEEEecCCCceeeecCCcccCCccce----eeeecCCccccccchHHHhhHHHHHHHHHHHHHHHHH Confidence 0 0111222222110 0111 11233333334333 3556678899999 48899999999998887777776 Q ss_pred -HhccceeecchHHhccCCCCcccccCccCCcccceeeeecCCCCCCcceE---EecccChHHHHHHHHHHHHHHHHHhC Q lcl|Aclame:pro 297 -KMGQRTVFVSDVMLRTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKD---VTHDIRTEQYKEAINQALRTLEMELK 372 (517) Q Consensus 297 -~~~~~~i~v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~---~~~dir~e~~~~~l~~~l~~i~~~~g 372 (517) ...++.+.||.+......+. .++ -..|. ....+...++. .++++. .....++.+...|....- T Consensus 298 ~~~~~pp~~v~~~~~~~~~~l---~pg------g~~~~--~~~~~~~~i~p~~~~~~~~~--~~~~~i~~~~~rI~~af~ 364 (559) T protein:vir:95 298 DKATNPPMVAPTSLKNQRASL---LPG------DITYI--DQITGQDGFRPAYLVNPSTA--DLVADIQDTRQIINSAYF 364 (559) T ss_pred HHHhcCceeccccccccceee---ecc------ceeee--CCCCCcccceeecccccchH--HHHHHHHHHHHHHHHHhh Confidence 46678888877653211110 000 01111 11112223332 234432 112223333333322221 Q ss_pred CCc-cccccCCCccchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhccCCCCC--CccceEEEeCCCc Q lcl|Aclame:pro 373 LSV-GTFSFDGRSMKTATEIVSENDLTYRTRNDHVYEV-EQFIKGLVISVLELAKTYKLFGGEIP--SAEHIGVDFDDGV 448 (517) Q Consensus 373 ~s~-~~~~~~~~~~~TAtei~a~~~~~~~t~~~~~~~~-~~al~~li~~il~~~~~~~~~~~~~~--~~~~v~i~f~d~i 448 (517) ... ..+..-+....|||||........+...-.-..+ ...|.-|+..++.++.-.+.....+. ...+|+|++--.+ T Consensus 365 ~d~~~~l~~r~~~rvTAtEV~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~p~~l~~~~i~v~~is~L 444 (559) T protein:vir:95 365 VDLFMMLQNINTRSMPVEAVIEMKEEKLLMLGPVLERLNDECLNPLIDRSFSMMVRKNMLPPPPDVMEGMPLKVEYISVM 444 (559) T ss_pred hhhHHHhhcCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccCcceEEEeecHH Confidence 100 1122234456799999999999888876643333 45666677666666554332222111 1234666664433 Q ss_pred cCCHH-HH---HHHHHHHHh--cCC-------CCHHHHHH---hhCCCCHHHH--HHHHHHHHHh---ccc--------- Q lcl|Aclame:pro 449 FQDRS-AL---LRFYGQAKT--FGF-------IPTVEAIQ---RIFKVPKKTA--EQWLEEIRKD---QIE--------- 498 (517) Q Consensus 449 ~~d~~-~~---~~~~~~~~~--~G~-------~S~~~~l~---~~~~~~eeea--~~el~~i~~E---~~~--------- 498 (517) ..--. .. +.+.++.+. +++ +....++. ...|++..-. ++|+++++++ +++ T Consensus 445 a~aqk~~~~~~i~~~~~~~~~laq~~Pevld~id~d~~~~~~a~~~Gvp~~~irs~~ev~~~rqqr~~~qq~~q~~~~~~ 524 (559) T protein:vir:95 445 AQAQKSIGLSSLASTVNFIGQLAQVKPEALDKLNVDQAIDAFADMSGVSPTVIVPQEQVEQARQQRAQQQQQQQMMAMGM 524 (559) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCHHHHHHHHHHHhCCchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 22110 01 111111111 111 33333333 4445542110 1222222111 100 Q ss_pred -c---CCCCCcc---c--c-----CCCCCCCCC Q lcl|Aclame:pro 499 -L---DPVTISQ---R--A-----QKRMFGDEE 517 (517) Q Consensus 499 -~---~~~~~~~---~--~-----~~~~~G~ee 517 (517) + .....+. . . +.-..|+.+ T Consensus 525 ~aa~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 557 (559) T protein:vir:95 525 AAAQGVKTLSEAKTSDPSVLSAMANAVSGQGGQ 557 (559) T ss_pred HHHHhhhccccccCCChhHHHHHHHhhcCcccc Confidence 0 0000000 0 0 000011112 No 117 >protein:vir:99563 Length: 862 # NCBI annotation: minor head protein-like protein # Family: family:all:297 # MgeID: mge:1544 # MgeName: BcepF1 # Cross-refs: genbank:acc:YP_001039808;genbank:gi:126011058;genbank:GeneID:4818258 Probab=98.84 E-value=2.4e-08 Score=62.36 Aligned_cols=433 Identities=11% Similarity=0.055 Sum_probs=181.7 Q ss_pred CchHHH----------------HHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHH-HHHHhcCC-Cccccccccc Q lcl|Aclame:pro 1 MKVIQR----------------IKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIER-NLRQYEGD-YPQVEYINSQ 62 (517) Q Consensus 1 m~~~~~----------------ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~-~~~~Y~g~-~~~~~~~~~~ 62 (517) |.+.++ .+...+... -+..-.+.++.......-+...+. ..+ -..||... ++... T Consensus 66 ~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~-~~~~Dgl~n~~~~lG~~~~~s~y~-~~~~~~~~~~~~~f~gyq----- 138 (862) T protein:vir:99 66 VEISDSVNAKSVSGKNFAMDSAVRSAIKAIT-GFAMDDGGGAPVPIGAEGKQSSYA-VPEALQDWYLSQGFIGHQ----- 138 (862) T ss_pred ccccccccchhhhhhhhcchhhcchhhhhhh-hhhhhcchhhhhhccccccccccc-cchhccccccccCcccHH----- Confidence 111111 111000000 000000110000000000000000 000 01122111 11110 Q ss_pred CccccccccccChHHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCE Q lcl|Aclame:pro 63 GKIQERDYMTLNLRKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGL 142 (517) Q Consensus 63 ~~~~~~~~~~ln~~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~ 142 (517) -..-+....++++||+..|+-++.+...|...+.... ......+.|.+.++.-++...+.+++..+-.+|++ T Consensus 139 ---l~alY~~~~larkiVd~pAeDatR~g~~I~~~~d~~e-----~~~e~~~~ie~~~~rL~v~~~l~eair~~RLyGga 210 (862) T protein:vir:99 139 ---ACALIAQHWLVDKACSLAGEDAIRNGWHLKSLGEGEE-----IDEESLEKFKAIDVEFKVKENLIEFNRFKNVFGIR 210 (862) T ss_pred ---HHHHHHhCchhhhhhhhhhHHHhhCCceEeecCcccc-----cCHHHHHHHHHHHHHhhHHHHHHHHHHhcccccce Confidence 0112344578899999999999999999887543211 11223345666666557788888888888888887 Q ss_pred EEEEEEeCCeeEEEEEcCCeEEEEEEcC--CceEEEEEEEE-EE---------EEecCCcEEEEEEEEEeecceeeccce Q lcl|Aclame:pro 143 TVRPYVDNGEIEFSWALANAFYPLRSNS--NGISEGVMKSV-TT---------KVIGNKTVYYTLLEFHEWEKTEEGESL 210 (517) Q Consensus 143 ~~k~~~d~g~~~i~~v~a~~~~P~~~~~--~~~~~~a~~~~-~~---------~~~~~~~~~yt~lE~h~~~~~~~~~~~ 210 (517) ++-..++...+. .+ + -||.-+. .+...++.... .. ..+.....||. ... T Consensus 211 ~ililv~~~D~~-~L---s--qPLn~e~I~kG~lkgl~vlDp~w~~p~~v~~~~~Dp~sp~yGk-------------P~~ 271 (862) T protein:vir:99 211 VAIFVVDSEDPD-YY---E--KPFNPDGITPGSYRGISQIDPYWMMPMLTAESTADPSSQFFYE-------------PEF 271 (862) T ss_pred EEEEEecCcCch-hh---h--cCcCcccccccceeEEEEechhhhcccccccccccccccccCC-------------cee Confidence 766554421100 00 0 1210000 00000000000 00 00000000000 001 Q ss_pred EEEEEEEeecCCccccCcccccccccCCCCcceEEcCCCcceEEEecCCcccccc-CCCCCCcchhhhhHHHHHHHHHHH Q lcl|Aclame:pro 211 YVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNIN-PHSPLGLGITDNSVSTLKKINDTY 289 (517) Q Consensus 211 y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~-~~splG~S~~~~~~~lid~lD~~~ 289 (517) |.|..+ .| |+.-+ +.+.|- ++++-.. ....+|+|++..+.+.|..++.+. T Consensus 272 y~I~g~------------~I----H~SRl---iif~g~----------~vpd~lk~ay~f~G~SvLe~iyd~L~~~d~t~ 322 (862) T protein:vir:99 272 WIISGQ------------KY----HRSHL---IIARGP----------QPADILKPTYIFGGIPLVQRIYERVYAAERTA 322 (862) T ss_pred eeecCe------------ee----cccee---EEecCC----------CchhhhhccCCccCccHHHHHHHHHHHHHHHH Confidence 111110 00 01000 122221 1112111 133579999999999999999887 Q ss_pred HHHHHHHHhccceeecchHHhccCCCCccc----ccCccCCcccceeeeecCCCCCCcceEEecccChHHHHHHHHHHHH Q lcl|Aclame:pro 290 DQFWWEIKMGQRTVFVSDVMLRTVPDESGM----PPPQVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALR 365 (517) Q Consensus 290 s~~~~e~~~~~~~i~v~~~~l~~~~~~~~~----~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~ 365 (517) .....-+...+.+++--. .+....+.... .....+.....+. -.+. +..+++++.++ ......++.+.+ T Consensus 323 ~saa~Ll~ka~l~v~ktd-~l~~l~~ed~l~~r~~~~~~~rdN~Gi~---liD~-eEe~e~ls~sl--SGL~dll~~~~q 395 (862) T protein:vir:99 323 NEAPLLAMNKRTTAIHTD-TAKAIANEDKFIQRLMFWVRYRDNHAVK---VLGT-DETMEQFDTSL--ADFDAVIMGQYQ 395 (862) T ss_pred HHHHHHHHHhccceeech-hHhhhccHHHHHHHHHHHHhccCcceeE---EecC-CCceeEEeccc--CChHHHHHHHHH Confidence 777666655544443321 11111111110 0001111111111 1121 23466666544 345566777788 Q ss_pred HHHHHhCCCccc-cccCCCcc-chHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEE Q lcl|Aclame:pro 366 TLEMELKLSVGT-FSFDGRSM-KTATEIVSENDLTYRTRNDHV-YEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGV 442 (517) Q Consensus 366 ~i~~~~g~s~~~-~~~~~~~~-~TAtei~a~~~~~~~t~~~~~-~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i 442 (517) .|+..++++... ||-.-.|. .|+.+=... .+..+..+| ..++..|+.|+..+. + .+ + ...+++| T Consensus 396 ~IAaas~IP~tiLfGqspaGlnATGE~D~~n---YyD~I~s~QE~~L~P~LerL~~li~-~----~l-g----~~~d~~i 462 (862) T protein:vir:99 396 LVASIAKTPATKLLGTAPKGFNSTGEFETIS---YHEELESIQEHVYMPFLQRHYLISR-L----SL-G----IQHEIDV 462 (862) T ss_pred HHHhhhCCCceeecccCcccccCchHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-H----hc-C----CCCcceE Confidence 899999998764 44332343 444433333 444444443 568888887765443 2 12 1 1246999 Q ss_pred EeCCCccCCHHHHHHH-------HHHHHhcCCCCHHHHHHhh--------CCCCHHHHHHHHHHHHHhcc-c-------- Q lcl|Aclame:pro 443 DFDDGVFQDRSALLRF-------YGQAKTFGFIPTVEAIQRI--------FKVPKKTAEQWLEEIRKDQI-E-------- 498 (517) Q Consensus 443 ~f~d~i~~d~~~~~~~-------~~~~~~~G~~S~~~~l~~~--------~~~~eeea~~el~~i~~E~~-~-------- 498 (517) .|+.=...++.+.++. +.+++.+|++|..+++.++ .++++++.++.- -+..|+. + T Consensus 463 eFnpL~~~sekEkAEi~kk~Aea~~~lv~sGvispdEvR~~L~~~~~~g~~~l~ded~E~d~-~~~~e~~~~~e~~g~a~ 541 (862) T protein:vir:99 463 VMEPVASMTAQQQADLNKTKAEGGKVLIDGGVISPDEERNRIRDDKRSGYNRLTKEDAEETP-GASPENLAAYQKAGAAQ 541 (862) T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCcCCCCCCcccccccC-CCCcccccccccCCccc Confidence 9998888887766654 4577788999988876642 234454432110 0000000 0 Q ss_pred cCCCCCcc--ccCCC-CCCCCC Q lcl|Aclame:pro 499 LDPVTISQ--RAQKR-MFGDEE 517 (517) Q Consensus 499 ~~~~~~~~--~~~~~-~~G~ee 517 (517) ...+.+++ .++.+ ..|+.+ T Consensus 542 ~~ap~de~~aga~~~~~e~d~~ 563 (862) T protein:vir:99 542 ETASAKETQAGAAVTTAEGDQP 563 (862) T ss_pred ccccccccccccCCccccCCcc Confidence 00000000 00000 001111 No 118 >protein:vir:6240 Length: 457 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:131 # MgeName: phi-BT1 # Cross-refs: genbank:acc:NP_813694;swissprot:trembl:q859c3;genbank:gi:29366754;interpro:IPR006427;interpro:IPR006944;uniprot:Q859C3;genbank:GeneID:1258894 Probab=98.83 E-value=3.2e-08 Score=61.69 Aligned_cols=412 Identities=11% Similarity=0.052 Sum_probs=165.3 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccc-ccccc----Ch Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQER-DYMTL----NL 75 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~-~~~~l----n~ 75 (517) ||+|+++ |.+.... .+.. . ... .+... .+..+..|...+ .|..... ..+.+ .- T Consensus 1 Mg~~~~l---~~~~~~~----~~~~-~-~~~------~~~~~-~~~~~~~~~~~~------~g~~v~~~~al~~~~v~~~ 58 (457) T protein:vir:62 1 MGFWSAL---FGRGHSP----ALDA-A-EGR------AWEPY-DPSIYNLGATAS------SGERVTPHDALQVSAVFAS 58 (457) T ss_pred Cchhhhh---hcccccc----cccc-c-ccc------ccccc-hhhhhhcccccc------CCceechHHhhccHHHHHH Confidence 9999754 4321110 0000 0 000 00000 011111121110 0111000 00110 01 Q ss_pred HHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeCCee-E Q lcl|Aclame:pro 76 RKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDNGEI-E 154 (517) Q Consensus 76 ~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~g~~-~ 154 (517) -+.||+..|++ +..+.-....... ..........++.--.......-++.++.+.+..|.+++.+..++|++ . T Consensus 59 i~~ia~~iA~l----p~~~~~~~~~~~~--~~~~~~~~~ll~~pn~~~t~~~f~~~~~~~l~l~Gna~~~i~~~~g~~~~ 132 (457) T protein:vir:62 59 VRLLSETIATL----PLSTYSKRGGTRK--EIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAG 132 (457) T ss_pred HHHHHHhHhhC----ceEEEEecCCccc--cccchHHHHhccccCCCCCHHHHHHHHHHHHhhcCCeEEEEEeCCCcEEE Confidence 15666767765 3332211111000 011111122222211111233345556677777898988887666654 4 Q ss_pred EEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCccccccc Q lcl|Aclame:pro 155 FSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEE 234 (517) Q Consensus 155 i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~ 234 (517) +..++|+.+.+.....++.. ...| .. |+ +... |....+.. T Consensus 133 l~~l~p~~v~v~~~~~~~~~---------------~~~~---~~------------y~-----~~~~-----g~~~~~~~ 172 (457) T protein:vir:62 133 LDVLDPTKIHVHMVMVDGLR---------------RKVF---EA------------YD-----IDAD-----GNEVLLGW 172 (457) T ss_pred EEEEcCcceEEEEeccCCcc---------------ceeE---EE------------EE-----EccC-----CceeEEEe Confidence 55666666654321111110 0000 00 00 0000 00000000 Q ss_pred ccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhc-cceeec--chHHhc Q lcl|Aclame:pro 235 LYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMG-QRTVFV--SDVMLR 311 (517) Q Consensus 235 ~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~-~~~i~v--~~~~l~ 311 (517) ++ + + -++||+.+.++ ...+|+|.+.-+...|.....+-....+-|+.| ++.-++ |..+ T Consensus 173 ~~---~--------~--eiih~r~~~~~----~~~~G~sp~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l-- 233 (457) T protein:vir:62 173 FT---P--------R--DVLHIPGMMLP----GDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTM-- 233 (457) T ss_pred eC---c--------c--ceEEecCCCCC----CceecccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEcCCCC-- Confidence 00 0 0 14566644322 234799998888777776555544444455644 433332 2111 Q ss_pred cCCCCcccccCccCCcccceeeeecC------CCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCcc Q lcl|Aclame:pro 312 TVPDESGMPPPQVFDPDVNVYKSIRM------GTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSM 385 (517) Q Consensus 312 ~~~~~~~~~~~~~fd~~~~~y~~~~~------~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~ 385 (517) .+..-......|. ..|.+.+. =+++-.++.++......++.+..+.....|+...|++|..+|+...+. T Consensus 234 --s~e~~~~~~~~~~---~~~~G~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~ 308 (457) T protein:vir:62 234 --SEEGLARAREAWR---AANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNST 308 (457) T ss_pred --CHHHHHHHHHHHH---HHhcCccccCcceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCcc Confidence 0000000000110 01111110 012233555555555567777777778899999999999998766544 Q ss_pred chHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHh Q lcl|Aclame:pro 386 KTATEIVSENDLTY-RTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKT 464 (517) Q Consensus 386 ~TAtei~a~~~~~~-~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~ 464 (517) .+...+.......+ .++.-+...++.+|.. .++.........|.++++.-+..|..+.++.+.++++ T Consensus 309 ~~~sn~eq~~~~f~~~~l~P~~~~ie~~ln~------------~L~~~~~~~~~~i~fd~~~l~~~d~~~r~~~~~~~~~ 376 (457) T protein:vir:62 309 SWGSGLAEQNIAFTMFSLRPWLERIEAGFNR------------LLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQ 376 (457) T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHh------------hhcCccccCceEEEeechhhhccCHHHHHHHHHHHHh Confidence 33222222221222 1222222233222222 1221111223446677777667799999999999999 Q ss_pred cCCCCHHHHHHhhCCC---CHHHHHHHHHH-----HH---HhccccCCCCCcc---------ccC-CCCCCCCC Q lcl|Aclame:pro 465 FGFIPTVEAIQRIFKV---PKKTAEQWLEE-----IR---KDQIELDPVTISQ---------RAQ-KRMFGDEE 517 (517) Q Consensus 465 ~G~~S~~~~l~~~~~~---~eeea~~el~~-----i~---~E~~~~~~~~~~~---------~~~-~~~~G~ee 517 (517) +|+|+.-++++.. |+ .+-.+++.+.. +. +.+....+...+. .+. .+..-+|| T Consensus 377 ~G~~T~NE~R~~~-gl~pi~~g~~D~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 449 (457) T protein:vir:62 377 NGIYSIDEVRAAE-DMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDPDEG 449 (457) T ss_pred CCCcCHHHHHHHh-CCCCCCCCCcceeeeccccccccccccccccCCCccCCCCccCCCCCCCCCCCCCCCccc Confidence 9999999976543 44 22212211111 10 1111111111111 111 01111111 No 119 >protein:vir:3420 Length: 533 # NCBI annotation: capsid component # Family: family:all:47 # MgeID: mge:70 # MgeName: lambda # Cross-refs: genbank:acc:NP_040583;genbank:gi:9626247;genbank:GeneID:2703526 Probab=98.81 E-value=4.1e-08 Score=61.11 Aligned_cols=440 Identities=12% Similarity=-0.001 Sum_probs=198.6 Q ss_pred hhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCc-------ccccccc-cCc-------cccc---cccccChHHHH Q lcl|Aclame:pro 18 LSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYP-------QVEYINS-QGK-------IQER---DYMTLNLRKLS 79 (517) Q Consensus 18 ~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~-------~~~~~~~-~~~-------~~~~---~~~~ln~~~~i 79 (517) |.+-....+.. ++-......+..||.|-.. |.....+ +.. ...| -....++++.+ T Consensus 1 ~~~p~~~~~~~-------~~~~~~~~~~~~y~~~a~~~~~~~~~w~p~~~s~~~~~~~~~~~lr~RaRdl~rNn~~a~~a 73 (533) T protein:vir:34 1 MKTPTIPTLLG-------PDGMTSLREYAGYHGGGSGFGGQLRSWNPPSESVDAALLPNFTRGNARADDLVRNNGYAANA 73 (533) T ss_pred CCCchhhhhhc-------ccccchHHHHHhhhhccCCCCCcccccccCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHH Confidence 11111111111 0001122344556654321 1100000 000 0000 01123677899 Q ss_pred HHHHhhhhcCCcceeEecCcc-------cccccccchhHHHHHHHHHHh----------hhhHHHHHHHHHHHHHhhCCE Q lcl|Aclame:pro 80 ADVLSGLVFNEQCEVYVSDAK-------DEEKKDNSFKTAHEFIQHVFQ----------HNKFIKNLSDYLEPTFALGGL 142 (517) Q Consensus 80 ~~~~A~ll~~e~~~i~~~~~~-------~~~~~~~~~~~~~~~l~~~l~----------~n~f~~~~~~~~~~a~~~G~~ 142 (517) .+.+.+.+++. .|++.-.. +.+...+..+..+..+....+ ..+|......++...+..|.+ T Consensus 74 v~~~~~nvVG~--Gi~~~~~p~~~~lg~~~~~~~~~~~~ie~~w~~w~~~~~~~~D~~g~~~f~~~q~l~~r~~~~dGE~ 151 (533) T protein:vir:34 74 IQLHQDHIVGS--FFRLSHRPSWRYLGIGEEEARAFSREVEAAWKEFAEDDCCCIDVERKRTFTMMIREGVAMHAFNGEL 151 (533) T ss_pred HHHHHHHhhCC--CceeeeccchhhcCCChhHHHHHHHHHHHHHHHhhcCccceeccccccCHHHHHHHHHHHHHhCCce Confidence 99999999996 44432110 011112222223333333222 125777777888888999999 Q ss_pred EEEEEEeC--C---eeEEEEEcCCeEE-EE-EEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEE Q lcl|Aclame:pro 143 TVRPYVDN--G---EIEFSWALANAFY-PL-RSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITN 215 (517) Q Consensus 143 ~~k~~~d~--g---~~~i~~v~a~~~~-P~-~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n 215 (517) +++..+.. | .+++..++||.+- |. ..+.+.+..+|-+ ...+ ...-|.....|..+ T Consensus 152 f~~~~~~~~~g~~~~~~lq~ie~d~l~~~~~~~~~~~i~~GIe~----d~~G-r~~aY~i~~~~~~~------------- 213 (533) T protein:vir:34 152 FVQATWDTSSSRLFRTQFRMVSPKRISNPNNTGDSRNCRAGVQI----NDSG-AALGYYVSEDGYPG------------- 213 (533) T ss_pred EEEeeeccCCCCccceEEEEechhhcCCCCCCCCCCceEeeeEE----CCCC-CeEEEEEeecCCCC------------- Confidence 99988863 2 4688999999853 21 1122334344311 0111 11112111122111 Q ss_pred EEeecCCccccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 216 ELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWE 295 (517) Q Consensus 216 ~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e 295 (517) ..+. .|..++ ....++++-+.|+.. ....+...|+|.|+.++..+..+|.-.+.-..- T Consensus 214 ---------~~~~------~~~~~~---~~~~v~a~~VlH~f~----~~r~gQ~RGis~lapvl~~l~~l~~y~dael~~ 271 (533) T protein:vir:34 214 ---------WMPQ------KWTWIP---RELPGGRASFIHVFE----PVEDGQTRGANVFYSVMEQMKMLDTLQNTQLQS 271 (533) T ss_pred ---------cccc------ccceee---eeeccChhHeeeecc----ccCCCcccCCchHHHHHHHHHHHHHHHHHHHHH Confidence 0000 011111 112234445555543 334567789999999999999998655443332 Q ss_pred HH-hccceeecchHHhccCCCCcc--------------cccCcc------CCcccce-eeeecCC--CCCCcceEEeccc Q lcl|Aclame:pro 296 IK-MGQRTVFVSDVMLRTVPDESG--------------MPPPQV------FDPDVNV-YKSIRMG--TDEEFVKDVTHDI 351 (517) Q Consensus 296 ~~-~~~~~i~v~~~~l~~~~~~~~--------------~~~~~~------fd~~~~~-y~~~~~~--~~~~~v~~~~~di 351 (517) -+ .+.-..|| ++..+... ...... ++....+ +.+.... ..+..++.++|.- T Consensus 272 a~i~A~~a~fi-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pG~i~~L~pGe~i~~~~~~~ 346 (533) T protein:vir:34 272 AIVKAMYAATI-----ESELDTQSAMDFILGANSQEQRERLTGWIGEIAAYYAAAPVRLGGAKVPHLMPGDSLNLQTAQD 346 (533) T ss_pred HHHhhhheeee-----ecCCCcccccccccCCCcccccccccccchhhhhccCcceeeccCceeeecCCCCeeeecCCCC Confidence 22 22333333 21111100 000000 0000000 0000000 2344588888887 Q ss_pred ChHHHHHHHHHHHHHHHHHhCCCccccccCCCcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhh-- Q lcl|Aclame:pro 352 RTEQYKEAINQALRTLEMELKLSVGTFSFDGRSM--KTATEIVSENDLTYRTRNDHVYEVEQFIKGLV-ISVLELAKT-- 426 (517) Q Consensus 352 r~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~--~TAtei~a~~~~~~~t~~~~~~~~~~al~~li-~~il~~~~~-- 426 (517) +..++..-...+++.|....|+++..++-|-+++ .++-.......+++.. .|..+...+-+-+ +..+..+-. T Consensus 347 p~~~~~~f~~~~lr~iAaglGi~ye~lt~D~s~~nYSS~R~~~~e~~r~~~~---~q~~~~~~~~~pi~~~wl~~ail~G 423 (533) T protein:vir:34 347 TDNGYSVFEQSLLRYIAAGLGVSYEQLSRNYAQMSYSTARASANESWAYFMG---RRKFVASRQASQMFLCWLEEAIVRR 423 (533) T ss_pred CCCCHHHHHHHHHHHHHhhcCCCHHHHhhhcccccHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHcC Confidence 7778888888889999999999999998664322 2333333333333333 3333333232222 222221111 Q ss_pred -hhccCCCCCCc-------cceEEEeCCCccCCHHHHHHHHHHHHhcCCCCHHHHHHhhCCCCHHHHHHHHH----HHHH Q lcl|Aclame:pro 427 -YKLFGGEIPSA-------EHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTVEAIQRIFKVPKKTAEQWLE----EIRK 494 (517) Q Consensus 427 -~~~~~~~~~~~-------~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~~~l~~~~~~~eeea~~el~----~i~~ 494 (517) ..+.++...+. ..+.....--..+|+.++++.....+.+|+.|.++.+++. |.+-++..++++ ++++ T Consensus 424 ~i~~p~~~~~~~~~~~~~~~~~~w~~p~~~~iDP~Ke~~a~~~~i~~G~~s~~~~~a~~-G~D~~ev~~q~a~e~~~~~~ 502 (533) T protein:vir:34 424 VVTLPSKARFSFQEARSAWGNCDWIGSGRMAIDGLKEVQEAVMLIEAGLSTYEKECAKR-GDDYQEIFAQQVRETMERRA 502 (533) T ss_pred cccCCCccCCCchhhHHhhhceeeccCCccccChHHHHHHHHHHHHcCCCCHHHHHHHc-CCCHHHHHHHHHHHHHHHHh Confidence 11111111000 1233333555677999999999999999999999988766 765554433333 2222 Q ss_pred hccccCCCCCccc-cCCC-CCCCCC Q lcl|Aclame:pro 495 DQIELDPVTISQR-AQKR-MFGDEE 517 (517) Q Consensus 495 E~~~~~~~~~~~~-~~~~-~~G~ee 517 (517) -.. .+...... +..+ ...++| T Consensus 503 ~gl--~~~~~~~~~~~s~~~~~~~~ 525 (533) T protein:vir:34 503 AGL--KPPAWAAAAFESGLRQSTEE 525 (533) T ss_pred cCC--CCCCCCCcCccCCCCCCCCC Confidence 111 11111110 0101 111111 No 120 >protein:vir:172 Length: 708 # NCBI annotation: portal protein # Family: family:all:487 # MgeID: mge:5 # MgeName: HK620 # Cross-refs: genbank:acc:NP_112077;genbank:gi:13559867;genbank:GeneID:920970 Probab=98.79 E-value=4.5e-08 Score=60.85 Aligned_cols=483 Identities=8% Similarity=-0.021 Sum_probs=210.7 Q ss_pred hHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHH--HHhcCCCccc---ccccccCccccccccccChHH Q lcl|Aclame:pro 3 VIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNL--RQYEGDYPQV---EYINSQGKIQERDYMTLNLRK 77 (517) Q Consensus 3 ~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~--~~Y~g~~~~~---~~~~~~~~~~~~~~~~ln~~~ 77 (517) |=++.++.+.+....+.. . +....+.+.....-. .||.|....- ......++...+..++.|+-+ T Consensus 1 ma~~~~~~~~~~~~r~~~-----~-----~~~~~~~r~~~~~d~~f~~y~G~Qw~~~~~~~l~~~~q~~~rP~~~~N~i~ 70 (708) T protein:vir:17 1 MAETLEKKHERIMLRFDR-----A-----YSPQQEVREKCIEATRFARVPGGQWEGATAAGTKLDEQFEKYPKFEINKVA 70 (708) T ss_pred CchhHHHHHHHHHHHHHH-----H-----HhhhHHHHHHHHHHHHhhccCCCCCCHHHHHHHHhhhhhcCCCceEEcchH Confidence 445545544443332221 0 011233444443333 4688864321 111223333345667889888 Q ss_pred HHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe-------- Q lcl|Aclame:pro 78 LSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD-------- 149 (517) Q Consensus 78 ~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d-------- 149 (517) .++....+.=-.-.+.+.+.-. ....+.+..+.++..+..+.+.++.......+...+...|.||++++.| T Consensus 71 ~~i~~v~g~e~~nr~d~~v~p~-~~~~d~~~Ae~l~~l~~~~~~~~~~~~~~s~Af~~~i~~G~G~~~~~~d~~~e~d~~ 149 (708) T protein:vir:17 71 TELNRIIAEYRNNRITVKFRPG-DREASEELANKLNGLFRADYEETDGGEACDNAFDDAATGGFGCFRLTSMLVNEYDPM 149 (708) T ss_pred HHHHHHHhhHhhCCcceEEecC-CCcchHHHHHHHHHHHHHHHHhcCchhHHhHHHHHhhhcccceeeeeecccccCCCC Confidence 8888877776666777777422 1111234556777778888888899999999999999999999988642 Q ss_pred --CCeeEEEEE--cCCeEEE--EEEcCCceEEEEEEEEEEEE--------ecC-------------------CcEEEEEE Q lcl|Aclame:pro 150 --NGEIEFSWA--LANAFYP--LRSNSNGISEGVMKSVTTKV--------IGN-------------------KTVYYTLL 196 (517) Q Consensus 150 --~g~~~i~~v--~a~~~~P--~~~~~~~~~~~a~~~~~~~~--------~~~-------------------~~~~yt~l 196 (517) +.++.|..+ |+..++. -.... ....|-++++.... .++ .....+.. T Consensus 150 ~~~~~i~i~~~~~~~~~v~~Dp~a~~~-D~sDar~~~~~~~~~~d~~~~~yp~~a~~~~~~~~~~~~~~~~~~~d~vrv~ 228 (708) T protein:vir:17 150 DDRQRIAIEPIYDPSRSVWFDPDAKKY-DKSDALWAFCMYSLSPEKYEAEYGKKPPASLDVTSMTSWEYDWFDADVIYIA 228 (708) T ss_pred CCccccceEeeccchhheecCcccccc-ChhhhhhhhhhccCCHHHHHHhCccccchhhhhhhhccccccccCCCeEEEE Confidence 124444443 4455542 11110 11112111111000 000 00111222 Q ss_pred EEEeecceeeccceEEEEE------EEeecCCcccc-------Ccccccc----cc---cCCCCcceEEcCCCcceEEEe Q lcl|Aclame:pro 197 EFHEWEKTEEGESLYVITN------ELYKSDNEGEI-------GKRIPLE----EL---YEGMQEKTYIQGLSRPLFNYL 256 (517) Q Consensus 197 E~h~~~~~~~~~~~y~I~n------~ly~~~~~~~l-------G~~v~l~----~~---~~~l~~~~~~~g~~~p~f~~~ 256 (517) |+++... ...-.+...+ ..|.+.....+ |....-. .. |-.+.......+-...++.+| T Consensus 229 e~~~r~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~r~~~r~~v~~~~~~g~~~l~~~~~~p~~~f 306 (708) T protein:vir:17 229 KYYEVRK--ESVDVISYRHPITGEIATYDSDQVEDIEDELAIAGFQEVARRSVKRRRVYVSVVDGDGFLEKPRRIPGEHI 306 (708) T ss_pred EEEEEee--eeeEEEEEecCccCceeeeCccchhhHHHHHHhcccccceeeeeeEEEEEEEeecccccccCCCCCCCCcc Confidence 3221110 0000000000 01111110000 0000000 00 000000000111111111222 Q ss_pred cC-Ccc-cc-ccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHH-HhccceeecchHHhccCCCCcccccCccCCccccee Q lcl|Aclame:pro 257 KP-SGF-NN-INPHSPLGLGITDNSVSTLKKINDTYDQFWWEI-KMGQRTVFVSDVMLRTVPDESGMPPPQVFDPDVNVY 332 (517) Q Consensus 257 ~~-~~~-N~-~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~-~~~~~~i~v~~~~l~~~~~~~~~~~~~~fd~~~~~y 332 (517) |. |+. .. ...+.|...+.+.++++.++.+|...|.+.+.+ ..++...+++.+.+......... +..+...| T Consensus 307 P~vP~~g~r~~~d~~~~~yG~vr~~kd~Q~~~N~~~S~~~~~~a~~~~~~~i~~~~a~~g~~~~~~~-----~~~~~~~~ 381 (708) T protein:vir:17 307 PLIPVYGKRWFIDDIERVEGHIAKAMDPQRLYNLQVSMLADTAAQDPGQIPIVGMEQIRGLEKHWEA-----RNKKRPAF 381 (708) T ss_pred ceEEEecccccccCCCcccchhhhchhHHHHHHHHHHHHHHHHHhcCCcceeechhhhhhhHHhhhh-----cccchhhh Confidence 21 111 11 112344223558899999999999999999998 56666677777765432211100 11111111 Q ss_pred eeec---CC-----CCCCcceEEe-cccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 333 KSIR---MG-----TDEEFVKDVT-HDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVSENDLTYRTRN 403 (517) Q Consensus 333 ~~~~---~~-----~~~~~v~~~~-~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a~~~~~~~t~~ 403 (517) .... .. .+......++ |+++ .++++.++.....|...+|++...+|-.+ ..++-.|.+.......... T Consensus 382 ~~~~~~~~~~g~v~~~a~~~~~~~~~~~~-~~~~~llq~~~~~i~~~tGi~d~~~G~~s--n~SG~Ai~~rq~qg~~~~~ 458 (708) T protein:vir:17 382 LPLREVRDKYGNIIAGATPAGYTQPAVMN-QALAALLQQTSADIQEVTGGSQAMQQMPS--NIAQETVNNLMNRADMASF 458 (708) T ss_pred hhhhccCCcccccccccCCcccCCCcccc-HHHHHHHHHHHHHHHHhcCCChHHccCcc--chHHHHHHHHHHHHHHHHH Confidence 1111 00 1111122233 4444 58888898888888889999998888533 2345556555555555555 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh----hccCCCC-----------------------------CCccceEEEeCCCccC Q lcl|Aclame:pro 404 DHVYEVEQFIKGLVISVLELAKTY----KLFGGEI-----------------------------PSAEHIGVDFDDGVFQ 450 (517) Q Consensus 404 ~~~~~~~~al~~li~~il~~~~~~----~~~~~~~-----------------------------~~~~~v~i~f~d~i~~ 450 (517) .....+..+.+..-+.+|.+...+ ..+.... .+.++|.|+=..+.+. T Consensus 459 ~~~Dnl~~~~~~~g~~lL~lI~~~y~~~R~~RI~~edg~~~~v~in~~~~d~~~g~~~~~nDi~~g~~Dv~v~~~p~~~t 538 (708) T protein:vir:17 459 IYLDNMAKSLKRAGEVWLSMAREVYGSEREVRIVNEDGSDDIAVLSAQVVDRQTGAVVALNDLSVGRYDVTVDVGPSYTA 538 (708) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEecCCCCcceeeecceeccCCCccceeeccceeeeeeEEEecccCchh Confidence 566666666666666666544321 0000000 0112333332222222 Q ss_pred CHHHHHHHHHHHHhcCC-CCHHH-----HHHhhCCCCHHHHHHHHHHHHHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 451 DRSALLRFYGQAKTFGF-IPTVE-----AIQRIFKVPKKTAEQWLEEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 451 d~~~~~~~~~~~~~~G~-~S~~~-----~l~~~~~~~eeea~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) -.++..+.++++..+.. ....+ .+..+-++.- +++.+++|+........... ...+| T Consensus 539 ~r~~~~~~l~qll~~~~~~~~~~~~~~~l~l~~~D~p~--~~ei~e~ir~~~~~~~~~~~--------~~~e~ 601 (708) T protein:vir:17 539 RRDATVSVLTNVLSSMLPADPMRPAIQGIILDNIDGEG--LDDFKEYNRNQLLISGIAKP--------RNEKE 601 (708) T ss_pred HHHHHHHHHHHHHHhcCCccchhHHHHHHHHHhcCCCC--hHHHHHHHHHHhhccccccC--------cchhh Confidence 23344555555554321 11111 1222223321 33344555443321111000 00111 No 121 >protein:vir:4454 Length: 414 # NCBI annotation: Portal Protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:96 # MgeName: ST64B # Cross-refs: genbank:acc:NP_700377;genbank:gi:23505449;genbank:GeneID:955656 Probab=98.78 E-value=5.1e-08 Score=60.54 Aligned_cols=392 Identities=12% Similarity=0.071 Sum_probs=165.5 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccChH---- Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLR---- 76 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~---- 76 (517) ||+| +++|+|... . .+..+. .|..++.+-.+...-..... ...+....- T Consensus 1 Mg~f---~~lf~r~~~-------~------~~~~~~-------~~~~~~~~~~~~~~g~~v~~----~~al~~~~v~~~i 53 (414) T protein:vir:44 1 MVFF---SGLFQRKSD-------A------PVTTPA-------ELADAIGLSYDTYTGKQISS----QRAMRLTAVFSCV 53 (414) T ss_pred Cchh---hhhhccCcc-------C------cccchh-------hHhHhhccCccccCCceech----hhhhccHHHHHHH Confidence 9999 456654111 0 111111 12223322211110000000 001111111 Q ss_pred HHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHH-HHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeCCee-E Q lcl|Aclame:pro 77 KLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQH-VFQHNKFIKNLSDYLEPTFALGGLTVRPYVDNGEI-E 154 (517) Q Consensus 77 ~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~-~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~g~~-~ 154 (517) ..||+..|++ +..+.-.+....+ ......+...|+. --.......-++.++.+.+..|.+++.+.-++|++ . T Consensus 54 ~~Ia~~ia~~----p~~~~~~~~~~~~--~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~~ll~Gna~~~i~~~~g~~~~ 127 (414) T protein:vir:44 54 RVLAESVGML----PCNLYHLNGSLKQ--RATGERLHKLISTHPNGYMTPQEFWELVVTCLCLRGNFYAYKVKAFGEVAE 127 (414) T ss_pred HHHHHHhccC----ceEEEEecCCcee--ecccchHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEeCCCcEEE Confidence 3455555543 3222111111110 0111122222321 00011222334445566677788887776666665 4 Q ss_pred EEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCccccccc Q lcl|Aclame:pro 155 FSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEE 234 (517) Q Consensus 155 i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~ 234 (517) +..++|+.+.+...+++. ..|. ++ + .+ |.... T Consensus 128 L~~l~~~~v~~~~~~~~~------------------~~y~---~~------------------~--~~----g~~~~--- 159 (414) T protein:vir:44 128 LLPVDPGCVVPKLNSSWE------------------PVYQ---VT------------------F--PD----GSTDV--- 159 (414) T ss_pred EEEEcCceEEEEECCCCc------------------EEEE---EE------------------e--cC----ceEEE--- Confidence 566777766553211111 1110 00 0 00 00000 Q ss_pred ccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhc-cceeecchHHhccC Q lcl|Aclame:pro 235 LYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMG-QRTVFVSDVMLRTV 313 (517) Q Consensus 235 ~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~-~~~i~v~~~~l~~~ 313 (517) ++ +. -+.||+.+.. +.++|+|.+.-+...++.....-....+-++.| ++.-++ +.. T Consensus 160 ~~---~~----------evih~~~~~~-----d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil-----~~~ 216 (414) T protein:vir:44 160 LS---QE----------DIWHVRTLTL-----DGLVGLNPIAYAREAISLAAATEEHGARLFSNGAVTSGVL-----RTE 216 (414) T ss_pred Ec---cc----------cEEEecCCCC-----CCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEE-----EeC Confidence 00 00 1345553311 346799999888877775544433333445543 343332 111 Q ss_pred CCCccc---ccCccCCcccceeeeecC------CCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCc Q lcl|Aclame:pro 314 PDESGM---PPPQVFDPDVNVYKSIRM------GTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRS 384 (517) Q Consensus 314 ~~~~~~---~~~~~fd~~~~~y~~~~~------~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~ 384 (517) ..-... .....|. ..|.+... -+++..++.++......++.+..+...++|+...|++|..++..+++ T Consensus 217 ~~l~~e~~~~~~~~~~---~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~l~~~~~~ 293 (414) T protein:vir:44 217 QTLSDQAYERLKKDFE---ERHTGLGNAHRPMILEMGLDWKSMALNAEDSQFLETRKFQLEEICRLFRVPLHMVQNTDRA 293 (414) T ss_pred CCCCHHHHHHHHHHHH---HHhcCccccCcceecCCCceEEEccCChHHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCC Confidence 110000 0001110 11111110 01223355555555566777888777889999999999999865443 Q ss_pred c-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHH Q lcl|Aclame:pro 385 M-KTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAK 463 (517) Q Consensus 385 ~-~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~ 463 (517) . .++.+.. ...++.+|.-++..|-...+. .++........-|.++++.-+..|..+.++.+.+++ T Consensus 294 t~~n~e~~~-------------~~~~~~~l~P~~~~ie~~ln~-~L~~~~~~~~~~i~fd~~~ll~~d~~~~~~~~~~~~ 359 (414) T protein:vir:44 294 TFNNIEELG-------------LGFINYSLVPYLTRIEQRINT-GLVRKSKQGVFYAKFNAGALLRGDMKSRFEAYATGI 359 (414) T ss_pred CcccHHHHH-------------HHHHHHHHHHHHHHHHHHHHh-hcCCccccCceEEEEechhhhccCHHHHHHHHHHHH Confidence 2 2222221 223334444444444332221 222222223344666666666788899999999999 Q ss_pred hcCCCCHHHHHHhhCCCCHH-HHHHHHHHHHHhccccCCCCCccccCCCCCC-CCC Q lcl|Aclame:pro 464 TFGFIPTVEAIQRIFKVPKK-TAEQWLEEIRKDQIELDPVTISQRAQKRMFG-DEE 517 (517) Q Consensus 464 ~~G~~S~~~~l~~~~~~~ee-ea~~el~~i~~E~~~~~~~~~~~~~~~~~~G-~ee 517 (517) ++|+|+.-+++. ..|+..- ..++-+... +....+....+...++.++ .|| T Consensus 360 ~~G~~t~NE~R~-~~gl~p~~ggD~~~~~~---n~~~~~~~~~~~~~~~~~~~~d~ 411 (414) T protein:vir:44 360 NWGIYSPNDCRD-LEDMNPRPGGDVYLTPM---NMTTKPSDGSKAGKQKDNANADE 411 (414) T ss_pred hCCCcCHHHHHH-HhCCCCCCCcceecccc---cccccCCccccCCCCCCCCCCCC Confidence 999999999765 4466432 122211111 1111111111111122222 223 No 122 >protein:vir:94599 Length: 641 # NCBI annotation: PfWMP4_39 # Family: family:all:1548 # MgeID: mge:1525 # MgeName: Pf-WMP4 # Cross-refs: genbank:acc:YP_762669;genbank:gi:115304377;genbank:GeneID:5142299 Probab=98.78 E-value=5.3e-08 Score=60.48 Aligned_cols=468 Identities=11% Similarity=0.035 Sum_probs=180.5 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHH---HhcCCCcccc-------cccccCccccccc Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLR---QYEGDYPQVE-------YINSQGKIQERDY 70 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~---~Y~g~~~~~~-------~~~~~~~~~~~~~ 70 (517) =++-++|++.|++.... -++ -...|+. ||...+.... ....+.....|.+ T Consensus 23 ~~~~~~l~~~~~~~~~~--R~~------------------~e~~W~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~k 82 (641) T protein:vir:94 23 DRIGGVVISKWQESRDK--RNT------------------VENNWDETYELYRASAIDRQNTRARNFQTTGADDADWRHR 82 (641) T ss_pred hhHHHHHHHHHHHHHHh--hcc------------------hHHHHHHHHHHhhcchhhhhhcccccccccccchhccccc Confidence 13444444444432211 001 1123444 3333322111 1111112222334 Q ss_pred cccChHHHHHHHHh----hhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEE Q lcl|Aclame:pro 71 MTLNLRKLSADVLS----GLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRP 146 (517) Q Consensus 71 ~~ln~~~~i~~~~A----~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~ 146 (517) ...+-+...++.++ +.++....-+.+... ...+.+..+.++++++..+..++|...+..++.+++..|.+++++ T Consensus 83 i~~~~~~~~~~~l~s~Lm~~~~p~~~wf~~~p~--~~ed~~~A~~~~~~~~~~l~~~~~~~~~~~~~~d~~~~g~~iv~~ 160 (641) T protein:vir:94 83 INTGHTFEVVETLVAYFKGATFPSDDWFDLKGM--VPELADAARVVKQLTKTKLEAASIRDIFETYVRNLVLYGVSTYRL 160 (641) T ss_pred ccchhHHHHHHHHhhHHhhhhcCCCceEEEecC--CCChHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhcCceEEEe Confidence 44444444444444 333332222333111 111223334566778888888999999999999999999999999 Q ss_pred EEeC-----------------------------CeeEEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEec-----CCcEE Q lcl|Aclame:pro 147 YVDN-----------------------------GEIEFSWALANAFYPLRSNSNGISEGVMKSVTTKVIG-----NKTVY 192 (517) Q Consensus 147 ~~d~-----------------------------g~~~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~-----~~~~~ 192 (517) +|+. ..++++-|++..+++ ..+.+....+|+... .+.. ....| T Consensus 161 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~r~~~v~~~di~~--dps~~~~~~~f~~~r-~t~~t~~~l~~eg~ 237 (641) T protein:vir:94 161 GWDTSMERQFKRTFVETGDIFGGWEDVAVNRQRSELRIEPLSPYDVWL--DTSGGKNTGTFVRLR-HTREELHELVTSGY 237 (641) T ss_pred ehhhHHHHhhhhhcccchhhcccccccceecccceeeEEecchhheee--cCCCCcccccceehh-hhHHHHHHHHhcCC Confidence 8851 123455566665553 112233333332111 0000 00001 Q ss_pred EEE--E-EEEeec-------ceeecc----ceEEEEEEEeecCCccccCcccccccccCCCCcceEE--cC---CCcceE Q lcl|Aclame:pro 193 YTL--L-EFHEWE-------KTEEGE----SLYVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYI--QG---LSRPLF 253 (517) Q Consensus 193 yt~--l-E~h~~~-------~~~~~~----~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~--~g---~~~p~f 253 (517) |-. + +.|..+ ...+.+ ..+.+. +.| ++ -.+...++..++........+ .+ ++..|| T Consensus 238 ~~~d~v~~~~~~~~~~~~~d~~~d~~~~~~~~~~~~-e~~--gd--~~~d~~~~~~~~~~~~g~~il~~~~~~~~d~~Pf 312 (641) T protein:vir:94 238 YDLDLTQVEQYVDYKFADPDTPKDVNGTDTSGWDII-EYY--GP--LLVEGVQFWCVHAVFYGKQLIRLSDSKYWCGSPF 312 (641) T ss_pred CChhhcchhhccccccccccccccccccccccccee-eee--ee--eccCCCceeeEEEEEeCCEEeecccccccCcCCe Confidence 100 0 001000 000000 000000 001 00 001111111111000111111 11 112234 Q ss_pred EEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHH-hccceeecchHHhccCCCCcccccCccCCccccee Q lcl|Aclame:pro 254 NYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIK-MGQRTVFVSDVMLRTVPDESGMPPPQVFDPDVNVY 332 (517) Q Consensus 254 ~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~-~~~~~i~v~~~~l~~~~~~~~~~~~~~fd~~~~~y 332 (517) +.++ .....++.||.|....+.+.++.++...-+...-+. ..++...++.+.+-+..+ .. +.+...++ T Consensus 313 ~~~r----~~~~~~~~YG~gp~~~~l~dqk~ln~l~r~~ld~~~~~~~p~~~~~~~~~~~~~~---l~----~~PG~ii~ 381 (641) T protein:vir:94 313 VTTT----LLPDRDSVYGMSVLHPNLGALHVLNVLTNGRLDNLVLHINKMWTLVEDGILKRED---VK----AKPGAVFK 381 (641) T ss_pred EEec----ceecCCcccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeeccccccccce---ee----ccCCccee Confidence 4443 222447889999999999999999999988888774 445555544432211100 00 00010111 Q ss_pred eeecCCCCCCcceEEe---cccChHHHHHHHHHHHHHHHHHhCCCcccccc-CCCc-cchHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 333 KSIRMGTDEEFVKDVT---HDIRTEQYKEAINQALRTLEMELKLSVGTFSF-DGRS-MKTATEIVSENDLTYRTRNDHVY 407 (517) Q Consensus 333 ~~~~~~~~~~~v~~~~---~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~-~~~~-~~TAtei~a~~~~~~~t~~~~~~ 407 (517) . . ....++.++ ++..+ ....++.+-..+....+.+.-..+. ..++ ..|||||..+.+........+.+ T Consensus 382 ~--~---~~~~v~pl~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~TAtEV~~~~~e~~~~l~~i~r 454 (641) T protein:vir:94 382 V--A---QHGSLQPIDMGRQDFVV--TYQEAQVQESSVYRNTSTGPLIGNAAPRGGERVTAAEIQGVRDAGGNRLSSVHT 454 (641) T ss_pred e--C---CCCcceeecCCccccch--hHHHHHHHHHHHHHhhhhhhhhcccccccchhccHHHHHHHHHHHHHHHHHHHH Confidence 1 1 111223222 22222 1222332222333332222111111 1222 35999999888888888887778 Q ss_pred HHH-HHHHHHHHHHHHHHhhhhcc--------------CCCCCCccceEEEeCCCccCCHHH------HHHHHHHHHhc- Q lcl|Aclame:pro 408 EVE-QFIKGLVISVLELAKTYKLF--------------GGEIPSAEHIGVDFDDGVFQDRSA------LLRFYGQAKTF- 465 (517) Q Consensus 408 ~~~-~al~~li~~il~~~~~~~~~--------------~~~~~~~~~v~i~f~d~i~~d~~~------~~~~~~~~~~~- 465 (517) .|. ..|..|++.++.+...+.+. +..+++...++.+|+= ++..... .++..++..+. T Consensus 455 ~l~~e~l~pll~~~~~~~~~~~~~p~i~R~~~~~~~~~~~~~~~p~~L~~~~~i-v~l~~~q~~~~~~~i~~l~~~~~~~ 533 (641) T protein:vir:94 455 HIEDSSTLPLLNKVFSLLQQFYVTPETIRMYVPEEQMDGFFEVSPEYLHYPYKF-LALGANYVVERERMVTDLLQLLDIS 533 (641) T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhhhhhchhhhcccCCCCCccceeeeeeE-eecchhHHHHHHHHHHHHHHHHHHh Confidence 777 47778888887766543211 1112223345444432 2333221 12222222211 Q ss_pred CCCCH-------H---HHHHhhCCC--CH------H-------HHHHHHHHHHHhccccCCC--CCcc---------ccC Q lcl|Aclame:pro 466 GFIPT-------V---EAIQRIFKV--PK------K-------TAEQWLEEIRKDQIELDPV--TISQ---------RAQ 509 (517) Q Consensus 466 G~~S~-------~---~~l~~~~~~--~e------e-------ea~~el~~i~~E~~~~~~~--~~~~---------~~~ 509 (517) |..+. . .-+.+..|+ .. + .++++.+++..+++..... .+.. ... T Consensus 534 a~~P~v~d~~d~~~~~~~~~~~~g~~~p~~~ir~~~~~~~~~~~~~~~~q~~~~~~a~~~~~~~~~~a~~~~~~~~~~~~ 613 (641) T protein:vir:94 534 GRVPQIGQSLDYALILEDLLRQMRFTDPMRYIKKAEAPPAAPPIAPAEPGALPPEMMNSVGGGLNDQAIAGMTPEDVSDL 613 (641) T ss_pred hcChhhhhcCCHHHHHHHHHHHhCCCCchhhccCccCchhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHH Confidence 11110 0 111112121 10 0 0112222221111111000 0000 000 Q ss_pred CCCCCCCC Q lcl|Aclame:pro 510 KRMFGDEE 517 (517) Q Consensus 510 ~~~~G~ee 517 (517) .+-.|=.| T Consensus 614 ~~~~~~~~ 621 (641) T protein:vir:94 614 ASRIGIDT 621 (641) T ss_pred HHhhcCCc Confidence 11111111 No 123 >protein:vir:102080 Length: 429 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1503 # MgeName: Fah # Cross-refs: genbank:acc:YP_512313;genbank:gi:89152482;genbank:GeneID:3953073 Probab=98.77 E-value=5.4e-08 Score=60.43 Aligned_cols=403 Identities=13% Similarity=0.109 Sum_probs=173.9 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccChH---- Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLR---- 76 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~---- 76 (517) ||+|+++.+|.++.... . ..+++. .. .+..|.-...+.++.. .+..+....- T Consensus 1 M~~~~~~f~~~~r~~~~----~---------~~~~~~-~~---~~~~~~g~~~~~~~v~-------~~~al~~~~v~~~i 56 (429) T protein:vir:10 1 MDSVKKFFNFEKRQTSQ----V---------IELNKD-DE---KLLEWLGISPSTISVK-------GKNALKVATVFACI 56 (429) T ss_pred CchhhhhhcccccCccc----c---------cccCCC-hH---HHHHHhcCCCCcceec-------hhhhhccHHHHHHH Confidence 99998888877653210 0 111111 11 1122332222221100 0011111111 Q ss_pred HHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHH-HHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeC-Cee- Q lcl|Aclame:pro 77 KLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQH-VFQHNKFIKNLSDYLEPTFALGGLTVRPYVDN-GEI- 153 (517) Q Consensus 77 ~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~-~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~-g~~- 153 (517) ..||+..|++ +..+.-.+....+ ......+...|+. --.......-++.++.+.+..|.+++.+..|. |++ T Consensus 57 ~~ia~~ia~l----~~~~~~~~~~~~~--~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~ 130 (429) T protein:vir:10 57 KILSESVSKL----PLKIYQEDEYGIQ--RGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKVQ 130 (429) T ss_pred HHHHHhhccC----ceEEEEecCCcee--eccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEE Confidence 3555555543 3332211111111 1111222333321 00001122334455667788899988887763 554 Q ss_pred EEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccc Q lcl|Aclame:pro 154 EFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLE 233 (517) Q Consensus 154 ~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~ 233 (517) .+..++|+++-+.. +..+.... ....+| . +..+ |....+. T Consensus 131 ~L~~i~~~~v~v~~-~~~~~~~~-----------~~~~~~------------------~-----~~~~-----g~~~~~~ 170 (429) T protein:vir:10 131 ALWPIDASKVTVYI-DDVGLLNS-----------KTKMWY------------------V-----VNTG-----GQQRVLK 170 (429) T ss_pred EEEEEcCceeEEEE-cCcccccc-----------cceEEE------------------E-----EccC-----CeEEEEc Confidence 67778888776532 22221100 000001 0 0000 1111100 Q ss_pred cccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhc-cceeec--chHHh Q lcl|Aclame:pro 234 ELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMG-QRTVFV--SDVML 310 (517) Q Consensus 234 ~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~-~~~i~v--~~~~l 310 (517) +. -++||+.+.+ .+...|+|.+.-+...++.....-....+-++.| ++.-++ |..+ T Consensus 171 ------~~----------evih~~~~~~----~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~l- 229 (429) T protein:vir:10 171 ------PE----------EILHFKNGIT----LDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQYVGDL- 229 (429) T ss_pred ------cc----------cEEEecCCCC----CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCCCC- Confidence 00 1456654321 1335699999888888777655444444455554 444443 1111 Q ss_pred ccCCCCcccccCccCCcccceeeeecC------CCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCc Q lcl|Aclame:pro 311 RTVPDESGMPPPQVFDPDVNVYKSIRM------GTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRS 384 (517) Q Consensus 311 ~~~~~~~~~~~~~~fd~~~~~y~~~~~------~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~ 384 (517) .+.........|. +.|..... -+++-.++.++......++.+..+...++|+...|++|..++...++ T Consensus 230 ---~~e~~~~~~~~~~---~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~ 303 (429) T protein:vir:10 230 ---NEDAKKVFRENFE---SMSSGLQNSHRIALMPVGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLSKA 303 (429) T ss_pred ---CHHHHHHHHHHHH---HHhccccccCceeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCC Confidence 0000000001111 11111110 01222344455444566777777888889999999999999865543 Q ss_pred c-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC-CCCCccceEEEeCCCccCCHHHHHHHHHHH Q lcl|Aclame:pro 385 M-KTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGG-EIPSAEHIGVDFDDGVFQDRSALLRFYGQA 462 (517) Q Consensus 385 ~-~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~-~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~ 462 (517) . .++.+. ....++.+|.-++..|....+. .++.. .......+.++++.-+..|..+.++...++ T Consensus 304 ~~sn~e~~-------------~~~f~~~~l~P~~~~ie~~ln~-kl~~~~~~~~g~~~~fd~~~ll~~d~~~~~~~~~~~ 369 (429) T protein:vir:10 304 TLNNIEQQ-------------QQQFYTDTLQATLTMYEQEMTY-KLFLDSELDKGFYSKFNVDAILRADIKTRYEAYRTG 369 (429) T ss_pred CcccHHHH-------------HHHHHHHHHHHHHHHHHHHHHH-hhcChhhcCCCcEEEeechhhhcCCHHHHHHHHHHH Confidence 2 222221 1122333444444433332211 12211 112234566777676678999999999999 Q ss_pred HhcCCCCHHHHHHhhCCCCHH-HHHHHH-----HHHHH-hccccC-CCCCccccCCCCCCC Q lcl|Aclame:pro 463 KTFGFIPTVEAIQRIFKVPKK-TAEQWL-----EEIRK-DQIELD-PVTISQRAQKRMFGD 515 (517) Q Consensus 463 ~~~G~~S~~~~l~~~~~~~ee-ea~~el-----~~i~~-E~~~~~-~~~~~~~~~~~~~G~ 515 (517) +.+|+|+.-+++.. .|+..- ..++-+ ..+.. .+.... ....++..+++..|+ T Consensus 370 ~~~G~~T~NE~R~~-~gl~p~~ggD~~~~~~n~~~~d~~~~~~~k~g~~~~~~~~~~~e~~ 429 (429) T protein:vir:10 370 IQGGFLKPNEARSK-EDLPPEAGGDRLLVNGNMLPIDMAGQAYLKGGDTNGEVSKEGNEGN 429 (429) T ss_pred HhCCCcCHHHHHHH-hCCCCCCCcCeeeecccccchhhccccccCCCCCCCCCCCCCCCCC Confidence 99999999997654 454321 122111 11110 000000 001111112222222 No 124 >protein:vir:1326 Length: 457 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:28 # MgeName: phi-C31 # Cross-refs: genbank:acc:NP_047925;swissprot:trembl:q9zxb2;genbank:gi:9631143;uniprot:Q9ZXB2;genbank:GeneID:2715872 Probab=98.77 E-value=5.4e-08 Score=60.41 Aligned_cols=410 Identities=11% Similarity=0.038 Sum_probs=166.3 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccC-cCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccCh---- Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKI-NIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNL---- 75 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~---- 75 (517) ||+|.++++..++-. +..... ... .+++.+.. +-+- . ..|..... ...+.. T Consensus 1 Mg~~~~l~~r~~~~~-------~~~~~~-~~~~~~~~~~~~--------~~~~-~------~~g~~V~~-~~al~~~~V~ 56 (457) T protein:vir:13 1 MGFWSALFGRGHSPA-------LDGIEA-RAWEPYDPSIYN--------LGAV-A------ASGETVTP-HDALQVSAVF 56 (457) T ss_pred Cchhhhhhccccccc-------cccccc-ccccccchHHHh--------hccc-c------cCCceech-HHhhccHHHH Confidence 999976655433211 000000 000 01111110 1110 0 00100000 011111 Q ss_pred --HHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeCCee Q lcl|Aclame:pro 76 --RKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDNGEI 153 (517) Q Consensus 76 --~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~g~~ 153 (517) -..||+..|++ |..+.-..... ........+...++.--.......-++.++.+.+..|.+++.+..++|++ T Consensus 57 ~~v~~Ia~~iA~l----p~~~~~~~~~~--~~~~~~~~l~~~ln~~~n~~t~~~f~~~~~~~lll~Gna~~~i~~~~g~~ 130 (457) T protein:vir:13 57 ASVRLLSETIATL----PLSTYSKRGGS--RKEIVTPEWLDYPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWQGPNI 130 (457) T ss_pred HHHHHHHHhhccC----ceEEEEecCCc--ccccccchHHHhccccCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCcE Confidence 15666666654 32322111110 11111122223332210011233445556667777899998887776664 Q ss_pred -EEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCccccc Q lcl|Aclame:pro 154 -EFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPL 232 (517) Q Consensus 154 -~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l 232 (517) .+..++|+++-+.....++...- .|. . |.+ ... |.++-+ T Consensus 131 ~~l~~l~p~~v~v~~~~~~~~~~~---------------~~~---~------------y~~-----~~~-----~~~~~~ 170 (457) T protein:vir:13 131 VGLDVLDPTKIHVHMVMVDGLRRK---------------VFE---A------------YDI-----DAD-----GNEVLL 170 (457) T ss_pred EEEEEEccCceEEEEecCCCccce---------------eEE---E------------EEE-----ecC-----CceeeE Confidence 45666676665532211111110 010 0 000 000 001000 Q ss_pred ccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHh-ccceeec--chHH Q lcl|Aclame:pro 233 EELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKM-GQRTVFV--SDVM 309 (517) Q Consensus 233 ~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~-~~~~i~v--~~~~ 309 (517) ..++ + . -+.|++.+.++ ...+|+|.+.-+...|.....+-.-..+-|+. +++..++ |..+ T Consensus 171 ~~~~---~--------~--diih~~~~~~~----~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l 233 (457) T protein:vir:13 171 GWFT---P--------R--DVLHIPGMMLP----GDFVGCSPISYARESIGLALAAQKYGSKFFANGAMPGAVVEVPGTM 233 (457) T ss_pred EeeC---c--------c--ceEEecCCCCC----CccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEcCCCC Confidence 0000 0 0 13455544322 22469998887777776554443333444454 3444333 1111 Q ss_pred hccCCCCcccccCccCCcccceeeeecC------CCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCC Q lcl|Aclame:pro 310 LRTVPDESGMPPPQVFDPDVNVYKSIRM------GTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGR 383 (517) Q Consensus 310 l~~~~~~~~~~~~~~fd~~~~~y~~~~~------~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~ 383 (517) .+..-......|. ..|.+... =+++-.++.++......++.+..+...++|+...|++|..+|+... T Consensus 234 ----s~e~~~~~~~~~~---~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~ 306 (457) T protein:vir:13 234 ----SEEGLARAREAWR---AANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATN 306 (457) T ss_pred ----CHHHHHHHHHHHH---HHhcCccccCcceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCC Confidence 0000000000010 01111100 0223345556555556667777777788999999999999987665 Q ss_pred ccchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHH Q lcl|Aclame:pro 384 SMKTATEIVSENDLT-YRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQA 462 (517) Q Consensus 384 ~~~TAtei~a~~~~~-~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~ 462 (517) +..++..+....... ..++.-+...++.+|.. .++.........+.+++++-+..|..+.++...++ T Consensus 307 ~~~~~sn~eq~~~~f~~~tl~P~~~~ie~~ln~------------~L~~~~~~~~~~i~fd~~~l~~~D~~~r~~~~~~~ 374 (457) T protein:vir:13 307 STSWGSGLAEQNIAFTMFSLRPWLERIEAGFNR------------LLFAETADRFRFVKFNLDEIKRGAPKERMELWSLG 374 (457) T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHH------------hhcCccccCceeEEeechhhhccCHHHHHHHHHHH Confidence 443332222222111 12222222222222221 12221112234477777777778999999999999 Q ss_pred HhcCCCCHHHHHHhhCCCC---HHHHHHHHH-----HHH---HhccccCCCCCc-----cccCCCCCCCC---------- Q lcl|Aclame:pro 463 KTFGFIPTVEAIQRIFKVP---KKTAEQWLE-----EIR---KDQIELDPVTIS-----QRAQKRMFGDE---------- 516 (517) Q Consensus 463 ~~~G~~S~~~~l~~~~~~~---eeea~~el~-----~i~---~E~~~~~~~~~~-----~~~~~~~~G~e---------- 516 (517) +++|+|+.-+++.. .|+. +-.+++..- .+. +.+....+.... ...+....|.. T Consensus 375 ~~~G~~T~NE~R~~-~gl~Pi~~g~~d~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~~~~~~~~ 453 (457) T protein:vir:13 375 LQNGIYSIDEVRAA-EDMTPLPDGLGEKYRVPLNLGEVGEEPEPEPAPAPPAIEPPAEEPDEEPEPEGKPDDEGATEEDD 453 (457) T ss_pred HhCCCcCHHHHHHH-hCCCCCCCCcccceeeccccccccccccccccCCCCCCCCCccccCCCCCCCCCCccccCCCCcc Confidence 99999999986553 3543 221221111 110 001111111110 00000001110 Q ss_pred C Q lcl|Aclame:pro 517 E 517 (517) Q Consensus 517 e 517 (517) | T Consensus 454 ~ 454 (457) T protein:vir:13 454 E 454 (457) T ss_pred c Confidence 1 No 125 >protein:vir:100039 Length: 522 # NCBI annotation: T7-like head-to-tail connector # Family: family:all:481 # MgeID: mge:1604 # MgeName: P-SSP7 # Cross-refs: genbank:acc:YP_214201;genbank:gi:61806424;genbank:GeneID:3294719 Probab=98.71 E-value=9e-08 Score=59.22 Aligned_cols=446 Identities=11% Similarity=0.042 Sum_probs=182.8 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCccccccc--ccCccccccccccChHHH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYIN--SQGKIQERDYMTLNLRKL 78 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~--~~~~~~~~~~~~ln~~~~ 78 (517) |. +|..+.++.. +...-...|+.+|.=..|.+-... ..+...+..+.-=..+.. T Consensus 1 m~----~~~r~~~L~~--------------------~R~~~e~~w~e~~~~tlP~~~~~~~~~~~~~~~~~~~~dstg~~ 56 (522) T protein:vir:10 1 MK----ARERYNQLTT--------------------ARQMFLDKAVECSELTLPYLIDDDISSRPNHKSLTVPWQSVGAK 56 (522) T ss_pred Cc----hHHHHHHHHH--------------------HhhHHHHHHHHHHHHhhhcccCCCCCCCcccccccccccchHHH Confidence 33 2222211111 111224556655432222111111 011111112222244455 Q ss_pred HHHHHhhhhcCCc--c-----eeEecCcccccc-c-------ccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEE Q lcl|Aclame:pro 79 SADVLSGLVFNEQ--C-----EVYVSDAKDEEK-K-------DNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLT 143 (517) Q Consensus 79 i~~~~A~ll~~e~--~-----~i~~~~~~~~~~-~-------~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~ 143 (517) .++.+|+-|.+-. | ++.+++....+. . +...+...+.+-..+..++|...+.++..+..++|.+. T Consensus 57 a~~~LAa~l~~~ltpp~~~WF~l~~~d~~l~~~~~~~~~~~v~~~l~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~ 136 (522) T protein:vir:10 57 CCVTLAAKLMLAVLPPQTSFFKLQVRDDKLGEELDPQIRSELDLSFSKMERMIMDYIAASNDRVAVHQALKHLIVGGNAL 136 (522) T ss_pred HHHHHHHHHHHhhcCCCCccccccCChHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCcee Confidence 5666665444321 1 133333221111 1 11122233445566888999999999999999999977 Q ss_pred EEEEEeCCeeEEEEEcCCeEEEEEEcCCceEEEEEEEEEEEE------e---------cCCcEEEEEEEEEeecceeecc Q lcl|Aclame:pro 144 VRPYVDNGEIEFSWALANAFYPLRSNSNGISEGVMKSVTTKV------I---------GNKTVYYTLLEFHEWEKTEEGE 208 (517) Q Consensus 144 ~k~~~d~g~~~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~------~---------~~~~~~yt~lE~h~~~~~~~~~ 208 (517) + |.+.+. +..+|-..++ +..|..|....+|....... . +...+.+..++..+.-...... T Consensus 137 l--y~~~~~--~~~~pl~~y~-v~~d~~G~vd~i~r~~~~t~~ql~~~fg~~~~~~~~~~~~~~~~~v~v~~~v~p~~~~ 211 (522) T protein:vir:10 137 I--FMGKDG--LKTFPLTRYV-INRDGDGNVLEIVTKELISRKVLDIELPEPKPNTGIDESSTTNDDVTIYTYVKLDKSS 211 (522) T ss_pred E--EEcCCC--ceEEEcceEE-EeeCCCCCeeEEEeeeeccHHHHHHhcchhccchhhhcccCCCCceEEEEEEEeeccC Confidence 4 677665 4456767755 45566666555544222110 0 0000111111111110000111 Q ss_pred ceEEEEEEEeecCCccccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHH Q lcl|Aclame:pro 209 SLYVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDT 288 (517) Q Consensus 209 ~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~ 288 (517) +.|...++++ |..+++.. ...|+...||+.+ -.+...++.||+|--..+.+-++.|+.. T Consensus 212 ~~~~~~~~~~--------~~~~~~~~---------s~~g~~~~P~~~~----Rw~~~~ge~YGrgp~~~~l~D~k~L~~l 270 (522) T protein:vir:10 212 GRWVWHQEAF--------DKIIPDSR---------STAPKNASPWLPL----RFNTVDGEDYGRGRVEEFLGDLKSLDGL 270 (522) T ss_pred CceEEEEccC--------Cccccccc---------cccccccCCceee----eeeecCCCccccchHHHHHHHHHHHHHH Confidence 2222111111 11111110 0123333334433 2455668899999999999999999877 Q ss_pred HHHHHHHH-HhccceeecchHHhccCCCCcccccCccCCcccceeeeecCCCCCCcceEEe----cccChHHHHHHHHHH Q lcl|Aclame:pro 289 YDQFWWEI-KMGQRTVFVSDVMLRTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVT----HDIRTEQYKEAINQA 363 (517) Q Consensus 289 ~s~~~~e~-~~~~~~i~v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~----~dir~e~~~~~l~~~ 363 (517) --....-. ...++...||++.+....+- .......+. .+..+ .+..++ .++. .....++.+ T Consensus 271 ~~~~~~~~~~a~~p~~lv~~~~~~~~~~l--------~~~~~~~~v--~g~~~--~v~~~~~~~~~d~~--~~~~~i~~~ 336 (522) T protein:vir:10 271 SQSLIEGAAAASKVVFLVSPSSTTKPATI--------AKAGNGAIV--QGRPE--DVAVIQVGKTADFS--TAANMATAI 336 (522) T ss_pred HHHHHHHHHHhcCCceeeccccccccccc--------cCCCCccee--cCCCc--cceeecccccccch--HHHHHHHHH Confidence 55555544 56777777755443221110 011111111 11112 232332 2333 233344444 Q ss_pred HHHHHHHhCCCccccccCCCccchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhccCCCCCCccce-E Q lcl|Aclame:pro 364 LRTLEMELKLSVGTFSFDGRSMKTATEIVSENDLTYRTRNDHVYEV-EQFIKGLVISVLELAKTYKLFGGEIPSAEHI-G 441 (517) Q Consensus 364 l~~i~~~~g~s~~~~~~~~~~~~TAtei~a~~~~~~~t~~~~~~~~-~~al~~li~~il~~~~~~~~~~~~~~~~~~v-~ 441 (517) .+.|....-+. .--.....|||||....+...+...-.-..+ ...|.-|+.-++.++.-.+.....+.+...+ . T Consensus 337 ~~ri~~aFl~~----~~~d~~rvTAtEV~~r~~E~~~~LGpv~~rl~~E~l~Pli~r~~~il~r~g~lP~~p~~~~~~~~ 412 (522) T protein:vir:10 337 EKRLLEAFLVM----NVRNAERVTAEEVRLTQLELEQQLGGIFSLLVIEFLIPYLNRTLLVLQRSNQIPKLPKDIVRPTI 412 (522) T ss_pred HHHHHHHHhhc----cCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccc Confidence 44443322111 1113356799999999999888776643333 4455556666666555433322222222121 2 Q ss_pred EEeCCCccCCHHHHHHHHHHH---Hh--cC------CCCHHHHHH---hhCCC-------CHHHHHHHHHHHHH------ Q lcl|Aclame:pro 442 VDFDDGVFQDRSALLRFYGQA---KT--FG------FIPTVEAIQ---RIFKV-------PKKTAEQWLEEIRK------ 494 (517) Q Consensus 442 i~f~d~i~~d~~~~~~~~~~~---~~--~G------~~S~~~~l~---~~~~~-------~eeea~~el~~i~~------ 494 (517) |++-..+. ....++.+++. ++ +| .+...+++. ...|+ |++|++++.++.++ T Consensus 413 v~~is~La--raq~~~~l~~~~~~i~~~~~p~~~~~~id~d~~~~~~a~~~Gvp~~~ivrt~eev~~~~q~~q~~~~~~~ 490 (522) T protein:vir:10 413 VAGVNALG--RGQDRESLTAFVGTIAQTLGPEALMQYLNPLEAIKRLAAAQGIDVLNLVKTEQQLAEEQQAAQQQAAQQS 490 (522) T ss_pred ccchhHHH--HHHHHHHHHHHHHHHHHhhCchhhhhcCCHHHHHHHHHHHhCCChhhhcCCHHHHHHHHHHHHHHHHHHH Confidence 23222221 11111212111 11 11 122223232 34454 34443332222111 Q ss_pred --hccc---cCCCCCcc-cc----CCCCCCCC Q lcl|Aclame:pro 495 --DQIE---LDPVTISQ-RA----QKRMFGDE 516 (517) Q Consensus 495 --E~~~---~~~~~~~~-~~----~~~~~G~e 516 (517) +++. ..+..+.+ .+ +.-..|.| T Consensus 491 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (522) T protein:vir:10 491 LVDQAGQMTGSPLMDPTKNPQLMDEEQPPMEE 522 (522) T ss_pred HHHHHHHHhcccccCccccHHHHHHhCCCCCC Confidence 1111 11111111 00 01111222 No 126 >protein:vir:81072 Length: 432 # NCBI annotation: p07 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1889 # MgeName: Xop411 # Cross-refs: genbank:acc:YP_001285677;genbank:gi:148727185;genbank:GeneID:5247117 Probab=98.69 E-value=1e-07 Score=58.88 Aligned_cols=404 Identities=12% Similarity=0.097 Sum_probs=164.6 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccc-ccccc----Ch Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQER-DYMTL----NL 75 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~-~~~~l----n~ 75 (517) ||+|.++|++|++-...-.... ...+ + +....+.+-+-+.+ .|..... ..+.. .- T Consensus 7 mg~f~r~~~~~~~~~~~~~~~~-~~~~--------~-----~~~~~~~~~~~~~~------~g~~v~~~~al~~~~V~~~ 66 (432) T protein:vir:81 7 LGLFGQLKAMFVPPDPVDIGGG-QTFT--------P-----VNATARDLGIIISD------TGAAVNADAIMRLDAVAAC 66 (432) T ss_pred cchhhhhhhhcccccccccccc-cccc--------c-----Cccchhhhcccccc------cCcccchHhhhccHHHHHH Confidence 9999999999976332100000 0000 0 00000111110000 0000000 00100 01 Q ss_pred HHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHH-HHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeCCee- Q lcl|Aclame:pro 76 RKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQH-VFQHNKFIKNLSDYLEPTFALGGLTVRPYVDNGEI- 153 (517) Q Consensus 76 ~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~-~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~g~~- 153 (517) -..||+.+|++ +..+.-.+.+... ......+...|+. -=....-..-++.++.+.+-.|.+++.+..++|++ T Consensus 67 i~~Ia~~ia~l----p~~~y~~~~~g~~--~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnayv~i~~~~g~~~ 140 (432) T protein:vir:81 67 VKLVSQAIAAM----PLTMYMRTPDGRK--EAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYVRKVVTDGRIE 140 (432) T ss_pred HHHHHHhhhhC----ceeeEEecCCcce--ecccchHHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEEEEEecCCcEE Confidence 15666666665 3332111111000 0111222222321 00000111223334556677788888777777764 Q ss_pred EEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccc Q lcl|Aclame:pro 154 EFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLE 233 (517) Q Consensus 154 ~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~ 233 (517) .+..++|+.+-+. .+.++ ...|+. +.. +| ..+.+ T Consensus 141 ~L~~l~~~~v~v~-~~~~g-----------------~~~y~~---~~~------~g------------------~~~~~- 174 (432) T protein:vir:81 141 SLQYLANDRLTIT-TDPKG-----------------NTAYRY---RRT------DG------------------QMIDI- 174 (432) T ss_pred EEEEEcCCceEEE-ECCCC-----------------cEEEEE---Eec------Cc------------------eEEEE- Confidence 4566777766553 22211 111110 000 00 00000 Q ss_pred cccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhc-cceeecchHHhcc Q lcl|Aclame:pro 234 ELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMG-QRTVFVSDVMLRT 312 (517) Q Consensus 234 ~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~-~~~i~v~~~~l~~ 312 (517) + +++ +.||+.+..| .-+|+|-+.-+...|......-.-..+-|+.| ++..++ .. T Consensus 175 --~---~~~----------iih~r~~~~d-----g~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil-----~~ 229 (432) T protein:vir:81 175 --P---KQQ----------IWKIMGYSLD-----GENGLSAIRYGAQIFGTAIAAEAQAARAFRNGQLQSVYY-----QI 229 (432) T ss_pred --c---ccc----------EEEecCCCCC-----CcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEE-----ec Confidence 0 001 2344432111 23588888777766665543333333345544 332222 21 Q ss_pred CCCCccc---ccCccCCcccceeeeecCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCcc-chH Q lcl|Aclame:pro 313 VPDESGM---PPPQVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSM-KTA 388 (517) Q Consensus 313 ~~~~~~~---~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~-~TA 388 (517) ...-... .....|....+....+-. +++..++.++......++.+..+...++|+...|++|..+|+...+. .++ T Consensus 230 ~~~l~~e~~~~~~~~~~~~~nag~~~vl-~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~ 308 (432) T protein:vir:81 230 DRFLTDDQYDSFAKKVSGSVEAGRAPLL-EGGMDVKSLGLNPVDAQLLQSRQYSVESICRFFGVPPSMIGHSSAGTTSWG 308 (432) T ss_pred CCCCCHHHHHHHHHHHhhhhcCCCceec-CCCceEEEccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCCcCCcccccc Confidence 1111100 000001000000000111 22334555666656677888888888999999999999998765432 233 Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCC Q lcl|Aclame:pro 389 TEIVSENDLTY-RTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGF 467 (517) Q Consensus 389 tei~a~~~~~~-~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~ 467 (517) +.+.......+ .++.-+...++.+|.. .++.......+.+.++++.-+..|..+.++.+.+++++|+ T Consensus 309 sn~eq~~~~f~~~tl~P~~~~ie~~l~~------------kLl~~~~~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~ 376 (432) T protein:vir:81 309 SGIESQQLGFLTMTLSPWLRRIEQSIAL------------NLLSPAERRRYFADFDTSALLRADSAARSSYYSQLVNNGL 376 (432) T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHh------------hccCccccCceEEEeechhhhccCHHHHHHHHHHHHhCCC Confidence 33322222222 2222233333333322 1222221223456666666667899999999999999999 Q ss_pred CCHHHHHHhhCCCCHHHH-HHHH--H----HHHH--hccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 468 IPTVEAIQRIFKVPKKTA-EQWL--E----EIRK--DQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 468 ~S~~~~l~~~~~~~eeea-~~el--~----~i~~--E~~~~~~~~~~~~~~~~~~G~ee 517 (517) |+.-+++.. .|+..-+- ...+ . -+.. ++...+|.......+... ..| T Consensus 377 ~t~NE~R~~-~glpp~~g~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~n~~~~~--~~~ 432 (432) T protein:vir:81 377 MTRDEAREI-EGLPKLGGNAAVLTVQSAMVPLDSIGLQASPEPASGLGNQQQDK--VSK 432 (432) T ss_pred CCHHHHHHH-hCCCCCCCCcceEeecCcccchhhhccCCCCCCCCCCCCccccc--ccC Confidence 999996654 45432110 0001 0 0100 111111111000000000 000 No 127 >protein:vir:94572 Length: 535 # NCBI annotation: Head-to-tail joining protein # Family: family:all:481 # MgeID: mge:1516 # MgeName: Berlin # Cross-refs: genbank:acc:YP_919010;genbank:gi:119637774;genbank:GeneID:5179332 Probab=98.69 E-value=1.1e-07 Score=58.80 Aligned_cols=458 Identities=10% Similarity=0.027 Sum_probs=185.5 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccChHHHHH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLRKLSA 80 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~~~i~ 80 (517) |.-=++ |.-|.+-... +-++... .+-..-...|+.+|.=..|.+-.....+......+..=..+...+ T Consensus 1 ~~~~~~-~~~~~~~~~~---~r~~~l~--------~~R~~~e~~w~e~~~y~lP~~~~~~~~~~~~~~~~~~dst~~~a~ 68 (535) T protein:vir:94 1 MASSQK-REGFAENGAK---AVYDALK--------NDRNSYETRAENCAKYTIPSLFPKDSDNASTDYTTPWQAVGARGL 68 (535) T ss_pred CCchhh-hhhHHHHHHH---HHHHHHH--------HHhhHHHHHHHHHHHHhccccCCCCCCccccccCCcccccHHHHH Confidence 332111 1111110000 0000000 011112445655543332322112222222222222334445555 Q ss_pred HHHhhhhcCC--cce----eEecCccccccc--ccchhHHHHHHH-------HHHhhhhHHHHHHHHHHHHHhhCCEEEE Q lcl|Aclame:pro 81 DVLSGLVFNE--QCE----VYVSDAKDEEKK--DNSFKTAHEFIQ-------HVFQHNKFIKNLSDYLEPTFALGGLTVR 145 (517) Q Consensus 81 ~~~A~ll~~e--~~~----i~~~~~~~~~~~--~~~~~~~~~~l~-------~~l~~n~f~~~~~~~~~~a~~~G~~~~k 145 (517) +.+|+-|++- |++ +.+++....... .......+++|+ ..+..++|...+.++..+..++|.+.+. T Consensus 69 ~~Laa~l~~~ltP~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~~~~snf~~~~~~~~~~L~~~G~a~l~ 148 (535) T protein:vir:94 69 NNLASKLMLALFPMQTWMKLTISEFEAKQLVAQPAELAKVEEGLSMVERILMNYIESNSYRVTLFETLKQLVVAGNALLY 148 (535) T ss_pred HHHHHHHHhhhcCCCCccccccChhhhhccccchhHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCcEeEe Confidence 5665544432 222 222221111100 111123444554 4478899999999999999999998876 Q ss_pred EEEeCC-eeEEEEEcCCeEEEEEEcCCceEEEEEEEEEEEE---------------ecCC---cEEEEEEEEEeecceee Q lcl|Aclame:pro 146 PYVDNG-EIEFSWALANAFYPLRSNSNGISEGVMKSVTTKV---------------IGNK---TVYYTLLEFHEWEKTEE 206 (517) Q Consensus 146 ~~~d~g-~~~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~---------------~~~~---~~~yt~lE~h~~~~~~~ 206 (517) .-.+.+ ..++..+|-..++ +..|..+.+..++....... ..+. -.+|+++... . T Consensus 149 ~~~~~~~~~~f~~~pl~~y~-v~~d~~G~vd~i~r~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~~~v~~~------~ 221 (535) T protein:vir:94 149 IPEPEGTYNPMKLYRLSSYV-VQRDAFGTVLQIVTLDKTAYAALPEDVRNSMDSSQEHKGDEMIDVYTHIYLD------E 221 (535) T ss_pred eccCcCcccceEEEEcCeEE-EeeCCCCCeEEEEeeeeccHHHhhHHHHHHHHhccccCCCceeEEEEEEEee------C Confidence 544443 3567788888866 45566665555443221110 0000 0123222211 1 Q ss_pred ccceEEEEEEEeecCCccccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHH Q lcl|Aclame:pro 207 GESLYVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKIN 286 (517) Q Consensus 207 ~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD 286 (517) ..+.|.+-+++ + |..++... ...|+...||+.+ -.+..+++.||+|--..+.+-++.|+ T Consensus 222 ~~~~~~~~~e~---~-----g~~~~~~~---------~~~g~~~~P~~~~----Rw~~~~ge~YGrgp~~~~l~D~k~L~ 280 (535) T protein:vir:94 222 ESGEYLKYEEI---D-----GVEVEGTD---------ASYPVDACPYIPV----RMVRIDGESYGRSYCEEYLGDLRSLE 280 (535) T ss_pred CCCcEEEEEEe---c-----Ceeecccc---------ccCccccCCceee----eeeecCCCccccchHHHHHHHHHHHH Confidence 11233321111 1 22222110 1123333344433 25556688999999999999999998 Q ss_pred HHHHHHHHHH-Hhccceeecch-HHhccCCCCcccccCccCCcccceeeeecCCCCCCcceEEecccChHHHHHHHHHHH Q lcl|Aclame:pro 287 DTYDQFWWEI-KMGQRTVFVSD-VMLRTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQAL 364 (517) Q Consensus 287 ~~~s~~~~e~-~~~~~~i~v~~-~~l~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l 364 (517) ..--....-. ...++...|++ ..+.... .....-..+. .+..++.++..+....+...-...++.+. T Consensus 281 ~l~~~~l~~~~~a~~~~~lv~p~g~~~~~~---------~~~~~~g~~v--~g~~~~v~~~~~~~~~~~~~~~~~i~~~~ 349 (535) T protein:vir:94 281 NLQEAIVKMSMISAKVIGLVNPAGITQVRR---------LTKAQTGDFV--SGRPEDISFLQLEKAADFSVARAVSEQIE 349 (535) T ss_pred HHHHHHHHHHHHhccCCcccccccccchhh---------cccCCCceee--cCCcccceeeecccccchhHHHHHHHHHH Confidence 6654443332 34455544432 2222110 0000111122 12222222222333334444445555554 Q ss_pred HHHHHHhCCCccccccCCCccchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEE Q lcl|Aclame:pro 365 RTLEMELKLSVGTFSFDGRSMKTATEIVSENDLTYRTRNDHVYE-VEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVD 443 (517) Q Consensus 365 ~~i~~~~g~s~~~~~~~~~~~~TAtei~a~~~~~~~t~~~~~~~-~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~ 443 (517) ..|....=+ ..+...+....|||||....+...+...-.-.. -...|.-|+..++.++.-.+.....+.+. +.++ T Consensus 350 ~rI~~af~~--~~~~~~d~~rvTAtEV~~r~~E~~~~LGpv~~rl~~ElL~Pli~r~~~il~r~g~lP~~p~~~--v~~~ 425 (535) T protein:vir:94 350 GRLSYAFML--NSAVQRTGERVTAEEIRYVASELEDTLGGVYSILSQELQLPMVRVLLKQLQATNQIPELPKEA--VEPT 425 (535) T ss_pred HHHHHHHhH--hhhccCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChhh--ccce Confidence 444332211 112222344579999999998888877653333 23345556666555554333322222222 3443 Q ss_pred eCCCccC-CHHHHHHHHHHHHh--cCC--------CCHHHHHH---hhCCC-------CHHHHHHHHHHHHHhccc---- Q lcl|Aclame:pro 444 FDDGVFQ-DRSALLRFYGQAKT--FGF--------IPTVEAIQ---RIFKV-------PKKTAEQWLEEIRKDQIE---- 498 (517) Q Consensus 444 f~d~i~~-d~~~~~~~~~~~~~--~G~--------~S~~~~l~---~~~~~-------~eeea~~el~~i~~E~~~---- 498 (517) +--++.. -....++..++..+ +++ +....++. ...|+ +++|.+++.++.++.+++ T Consensus 426 ~vs~la~l~r~~~~~~l~~~~~~laq~~P~~ld~~id~d~~~~~~a~~~Gvp~~~i~rs~eev~~~~~q~~~~~~~~~~~ 505 (535) T protein:vir:94 426 ISTGMEALGRGQDLDKLERCIAAWSALAPMQGDPDINIATIKLRIANAIGIDTSGILKTPEEKQQEMAEAAQGTAMQNAA 505 (535) T ss_pred EeehHHHHHHHHHHHHHHHHHHHHHhhChHHhhhcCCHHHHHHHHHHHhCCChhhhcCCHHHHHHHHHHHHHHHHHHHHH Confidence 3222210 00111111111111 111 22333332 33443 345555444333222111 Q ss_pred -cCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 499 -LDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 499 -~~~~~~~~~~~~~~~G~ee 517 (517) ..+...+ .... ..-| T Consensus 506 ~~~g~~~~--~~~~--~~~~ 521 (535) T protein:vir:94 506 ASAGAGAG--TMAT--ASPE 521 (535) T ss_pred HHHHHhhh--cccc--cChH Confidence 0000000 0000 0111 No 128 >protein:vir:1785 Length: 555 # NCBI annotation: head-tail connector protein # Family: family:all:481 # MgeID: mge:38 # MgeName: P60 # Cross-refs: genbank:acc:NP_570351;genbank:gi:18640510;genbank:GeneID:932723 Probab=98.66 E-value=1.3e-07 Score=58.33 Aligned_cols=449 Identities=10% Similarity=0.035 Sum_probs=183.8 Q ss_pred hHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccChHHHHHHH Q lcl|Aclame:pro 3 VIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLRKLSADV 82 (517) Q Consensus 3 ~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~~~i~~~ 82 (517) |=+..|..+.++.. +...-...|+.+|.=.-|.+-............+..=+.+...++. T Consensus 1 m~~~~~~r~~~l~~--------------------~R~~~e~~w~e~~~y~lP~~~~~~~~~~~~~~~~~~dst~~~a~~~ 60 (555) T protein:vir:17 1 MKHSAQAKYMMLRA--------------------DREDYLDSGRQSARLTLPYILTDEGHVQGGYLPTPWQSVGSKGVNV 60 (555) T ss_pred ChhHHHHHHHHHHH--------------------HhhHHHHHHHHHHHHhcccccCCCCCcccccccccccccHHHHHHH Confidence 22222222221111 1112345666665433232211111111111222333455566666 Q ss_pred HhhhhcCCc-------ceeEecCcccccc---------cccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEE Q lcl|Aclame:pro 83 LSGLVFNEQ-------CEVYVSDAKDEEK---------KDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRP 146 (517) Q Consensus 83 ~A~ll~~e~-------~~i~~~~~~~~~~---------~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~ 146 (517) +|+-|++-. -++.++++...+. .+.......+.+...+..++|...+.++..+..++|.+++ T Consensus 61 Laa~l~~~ltpp~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~l~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l-- 138 (555) T protein:vir:17 61 LASKLMLSLFPVNTSFFKLQINDAEIDNLGMDEQARSEIDLSLSRIERIVTQDIAESSDRVHLEMAMKHLIVTGNALL-- 138 (555) T ss_pred HHHHHHHhhcCCCCcccccccCHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCeEEE-- Confidence 665554331 1133333221110 0011112334455566678999999999999999998774 Q ss_pred EEeCCeeEEEEEcCCeEEEEEEcCCceEEEEEEEEEEEE------ecCC--------------cEEEE------------ Q lcl|Aclame:pro 147 YVDNGEIEFSWALANAFYPLRSNSNGISEGVMKSVTTKV------IGNK--------------TVYYT------------ 194 (517) Q Consensus 147 ~~d~g~~~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~------~~~~--------------~~~yt------------ 194 (517) |.+.+. +.++|-.+++ +..|..+....+|....... .+.. +..+. T Consensus 139 y~~~~~--~~~~pl~~y~-v~~d~~G~vd~v~rk~~~t~~ql~~~fg~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 215 (555) T protein:vir:17 139 YQGKKN--LKLYPLDRFV-VSRDGEGNVMEIVTEEQIDRSLLPEEFQKVGGLEGAPDSNAVGEDGPKMGVTAPGGRDKGK 215 (555) T ss_pred EecCCc--eeEEEcCeEE-EeeCCCcCeeEEEeeeeecHHHHHHHhhhccccchhhhhhhccccchhhhhhhhcccccCC Confidence 666654 3456667655 45566666665554221100 0000 00000 Q ss_pred --EEEEEeecceeeccceEEEEEEEeecCCccccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCc Q lcl|Aclame:pro 195 --LLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGL 272 (517) Q Consensus 195 --~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~ 272 (517) .++.|+... -..+.+++ |..-+ |..++. .+ ...|+...||+.++ .+..+++.||+ T Consensus 216 ~~~~~v~t~~~--~~~~~~~~----~~e~~----~~~v~~-----~l----~e~g~~e~P~i~~R----w~~~~ge~YGr 272 (555) T protein:vir:17 216 SNDALVYTYVC--RKDGQVKW----HQECD----GKVIPG-----SN----SSAPYTHNPWIPLR----FNIVDGEAYGR 272 (555) T ss_pred CcceeEeeccc--ccCCeeEE----EEecC----ceeccc-----cc----cccCcccCCeeeee----eeecCCCcccc Confidence 000000000 00011111 11000 111110 00 11223333344332 45566889999 Q ss_pred chhhhhHHHHHHHHHHHHHHHHHH-HhccceeecchHHhccCCCCcccccCccCCcccceeeeecCCCCCCcceEEecc- Q lcl|Aclame:pro 273 GITDNSVSTLKKINDTYDQFWWEI-KMGQRTVFVSDVMLRTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHD- 350 (517) Q Consensus 273 S~~~~~~~lid~lD~~~s~~~~e~-~~~~~~i~v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~d- 350 (517) |--..+.+-++.|+..--+...-. ...++...||++.+....+-. ......+. .+ ....++.++.. T Consensus 273 gp~~~~l~D~k~L~~l~~~~l~~~~~~~~pp~lv~~~g~~~~~~l~--------~~~~g~v~--~g--~~~~v~~~~~~~ 340 (555) T protein:vir:17 273 GRVEEFMGDLKSLEALSQAMVEGSAASAKVVFMVSPSATTKPQNLA--------LAANGAII--QG--RPDDVSVVQANK 340 (555) T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeccccccCcceee--------cCCCceee--cC--Ccccceeeeccc Confidence 999999999999998766666655 577777777554332211100 00001111 11 11223333311 Q ss_pred -cChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhh Q lcl|Aclame:pro 351 -IRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVSENDLTYRTRNDHVYEV-EQFIKGLVISVLELAKTYK 428 (517) Q Consensus 351 -ir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a~~~~~~~t~~~~~~~~-~~al~~li~~il~~~~~~~ 428 (517) .+...-...++.+...|....-+ ++..+....|||||..+.+...+...-.-..+ ...|.-|+.-++.++.-.+ T Consensus 341 ~~~~~~~~~~i~~~~~~I~~aFm~----~~~~d~~r~TAtEV~~r~~E~~~~LGpv~~rl~~E~L~Pli~R~~~il~r~g 416 (555) T protein:vir:17 341 AADFRTVLEMIQKLEQRISDAFLM----LQVRQSERTTATEVQATVQELNEQIGGIYSNLTTELLQPYLARKLHLLQKQR 416 (555) T ss_pred cchhhHHHHHHHHHHHHHHHHHhh----cCCCCcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCC Confidence 11222223333333323222111 11123456799999999999988887755555 3566667777777665443 Q ss_pred ccCCCCCCccceEEEeCCCcc-CCHHHHHHHHHHHH----hcC-------CCCHHHH---HHhhCCC-------CHHHHH Q lcl|Aclame:pro 429 LFGGEIPSAEHIGVDFDDGVF-QDRSALLRFYGQAK----TFG-------FIPTVEA---IQRIFKV-------PKKTAE 486 (517) Q Consensus 429 ~~~~~~~~~~~v~i~f~d~i~-~d~~~~~~~~~~~~----~~G-------~~S~~~~---l~~~~~~-------~eeea~ 486 (517) .....+.....+++. -++. .-..+.++..++.+ +.+ .+....+ +...+|+ ++|+++ T Consensus 417 ~lP~~p~~~v~~~i~--~~l~~l~r~~~~~~l~~~~~~laq~~~~p~~~d~id~d~~~~~~a~~~Gv~p~~ivrs~eev~ 494 (555) T protein:vir:17 417 KLPQLPKDLVQPTVV--AGLWGVGRGQDKQQLMEFITTLAQTMGPEIAMKYINPTEFIKRLAAAQGIDTLQLINSPETMK 494 (555) T ss_pred CCCCCCHhhhcccee--ehHHHHHHHHHHHHHHHHHHHHHhhcCchhHhhcCCHHHHHHHHHHHcCCChhhhcCCHHHHH Confidence 332222222233332 1111 01112222222111 111 1223333 3345565 455544 Q ss_pred HHHHHHHHhcc--------c-c--CCCCCc------cccCCCCCCC--------CC Q lcl|Aclame:pro 487 QWLEEIRKDQI--------E-L--DPVTIS------QRAQKRMFGD--------EE 517 (517) Q Consensus 487 ~el~~i~~E~~--------~-~--~~~~~~------~~~~~~~~G~--------ee 517 (517) +..+..+++++ . . ++..+. ........|+ .| T Consensus 495 ~~rq~~~~~~~q~~~~~qa~~~~~~~~~~~~~~~~~~~~~~a~~~~~a~~~~~~~~ 550 (555) T protein:vir:17 495 QLGDQQKQDMVQASLINQAGQLAKTPMAEQAMQLIQQQQEGAQDAGAAESETSSAE 550 (555) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhccccchhhhhHHHHHHhhcCCcc Confidence 33221111110 0 0 110000 0000000000 11 No 129 >protein:vir:77597 Length: 725 # NCBI annotation: portal protein # Family: family:all:487 # MgeID: mge:46 # MgeName: P22 # Cross-refs: genbank:acc:YP_063735;genbank:gi:51236726;genbank:GeneID:2944241 Probab=98.65 E-value=1.5e-07 Score=57.98 Aligned_cols=465 Identities=9% Similarity=-0.049 Sum_probs=217.9 Q ss_pred Cc----hHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccChH Q lcl|Aclame:pro 1 MK----VIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLR 76 (517) Q Consensus 1 m~----~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~ 76 (517) |. .+++++.+|+.- +.-.++-.....+..+||.|...+-.-... .....+..+|+- T Consensus 1 m~d~~~~~~~~~~~~~~~-----------------~~~~~~~r~~a~~d~~fy~G~Qw~~~~~~~---l~~q~rp~~N~i 60 (725) T protein:vir:77 1 MADNENRLESILSRFDAD-----------------WTASDEARREAKNDLFFSRVSQWDDWLSQY---TTLQYRGQFDVV 60 (725) T ss_pred CCchHHHHHHHHHHHHHH-----------------HHhhHHHHHHHHHHHHhhCCCCCCHHHHHH---HHhcCCCccccH Confidence 43 344444444321 111244555667788899997542211110 011223456877 Q ss_pred HHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe---C--- Q lcl|Aclame:pro 77 KLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD---N--- 150 (517) Q Consensus 77 ~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d---~--- 150 (517) +.+++...+.--+-.+.+.+.-. +..+....+.++..+.-+...++.......+...+...|.||+.++.| . T Consensus 61 ~~~i~~v~g~~~~nr~d~~v~P~--~~~d~~~Ae~l~~~~~~~~~~~~~~~a~s~Af~~~i~~G~G~~ev~~d~~~~d~~ 138 (725) T protein:vir:77 61 RPVVRKLVSEMRQNPIDVLYRPK--DGARPDAADVLMGMYRTDMRHNTAKIAVNIAVREQIEAGVGAWRLVTDYEDQSPT 138 (725) T ss_pred HHHHHHHHhhHHhCCcceEEecC--CccHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHhhcCcceeeeeecccCCCCC Confidence 77777766666556777777432 223334556666777777777888888889999999999999998754 1 Q ss_pred -CeeEEEEE----cCCeEEEEEEcCCc--eEEEEEEEEEEEEe----------------------cC--------CcEEE Q lcl|Aclame:pro 151 -GEIEFSWA----LANAFYPLRSNSNG--ISEGVMKSVTTKVI----------------------GN--------KTVYY 193 (517) Q Consensus 151 -g~~~i~~v----~a~~~~P~~~~~~~--~~~~a~~~~~~~~~----------------------~~--------~~~~y 193 (517) +.++|..+ ++.+++.= +++.. ...|-++++..... +. ..... T Consensus 139 ~~~~~i~~~~~~~~~~~v~~D-p~a~~~D~sDar~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 217 (725) T protein:vir:77 139 SNNQVIRREPIHSACSHVIWD-SNSKLMDKSDARHCTVIHSMSQNGWEDFAEKYDLDADDIPSFQNPNDWVFPWLTQDTI 217 (725) T ss_pred CCceeeEEeecccChhhceeC-chhhccChhhHHHHHHHhcCCHHHHHHHHhhCCcchhhcccccccccccccccCCCee Confidence 23444433 34444421 11100 01011100000000 00 00112 Q ss_pred EEEEEEeecceeeccceEEEEEEEeecCCccccCcccccc-----cc-----cCCC------------------CcceEE Q lcl|Aclame:pro 194 TLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLE-----EL-----YEGM------------------QEKTYI 245 (517) Q Consensus 194 t~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~-----~~-----~~~l------------------~~~~~~ 245 (517) +..|+++... +.-.+|...++. .|..+... .+ -+++ ...+.+ T Consensus 218 rv~E~~~r~~---------~~~~~~~~~~~~-tg~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~rv~~~~~~g~~~l 287 (725) T protein:vir:77 218 QIAEFYEVVE---------KKETAFIYQDPV-TGEPVSYFKRDIKDVIDDLADSGFIKIAERQIKRRRVYKSIITCTAVL 287 (725) T ss_pred EEEEEEEEEE---------EeeEEEEecCCC-CcceeecChhhHHHHHHHhhhcCchhhhhcccceeeeeEeeecCceee Confidence 2334332211 000111111100 01111100 00 0000 011111 Q ss_pred cC---C--CcceEEEecCCcccc-ccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHH-hccceeecchHHhccCCCCcc Q lcl|Aclame:pro 246 QG---L--SRPLFNYLKPSGFNN-INPHSPLGLGITDNSVSTLKKINDTYDQFWWEIK-MGQRTVFVSDVMLRTVPDESG 318 (517) Q Consensus 246 ~g---~--~~p~f~~~~~~~~N~-~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~-~~~~~i~v~~~~l~~~~~~~~ 318 (517) .+ + +..||++| .... ...++|++-+.+.++++..+.+|...|...+.+- ..+.+..++.+.+...... T Consensus 288 ~~~~~~~~~~~P~vP~---~g~r~~~~g~~~~~G~vr~~kd~Q~~~N~~~S~~~~~~~~~~~~~~~~~~~~i~~~~~~-- 362 (725) T protein:vir:77 288 KDKQLIAGEHIPIVPV---FGEWGFVEDKEVYEGVVRLTKDGQRLRNMIMSFNADIVARTPKKKPFFWPEQIAGFEHM-- 362 (725) T ss_pred ccCCcCCCCccceEEE---eeeeeccCCcccccchhhhhhhHHHHHHHHHHHHHHHHHhccccccccchhhhhHHHHH-- Confidence 11 0 01112211 1111 1346788888999999999999999999999984 4555556666554321100 Q ss_pred cccCccCCcccceeeee------cCCCCCCcceEEe-cccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHH Q lcl|Aclame:pro 319 MPPPQVFDPDVNVYKSI------RMGTDEEFVKDVT-HDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEI 391 (517) Q Consensus 319 ~~~~~~fd~~~~~y~~~------~~~~~~~~v~~~~-~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei 391 (517) .. ..+...|... ++....+.+..++ +++ -.+++..++.....|...+|+....+|..++ ..++-.| T Consensus 363 ~~-----~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~l-p~~~~~ll~~~~~~i~~~tGi~~~~lG~~~n-~~SG~ai 435 (725) T protein:vir:77 363 YD-----GNDDYPYYLLNRTDENSGDLPTQPLAYYENPEV-PQANAYMLEAATSAVKEVATLGVDTEAVNGG-QVAFDTV 435 (725) T ss_pred HH-----hccCCceecccccccCCCcccccCccccCCCCc-hHHHHHHHHHHHHHHHHHhCCCHHHhCCCch-hhHHHHH Confidence 00 0011111111 1111112333333 333 2467778888888888999999988886543 2334555 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----cc---CCCCC-------------------------Cccc Q lcl|Aclame:pro 392 VSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYK----LF---GGEIP-------------------------SAEH 439 (517) Q Consensus 392 ~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~----~~---~~~~~-------------------------~~~~ 439 (517) .++..............++.+.+.+-+.+|.+...+- .+ +.... +.++ T Consensus 436 ~~rq~qg~~~~~~~~Dnl~~~~~~~g~~lL~lI~~~~~~~rv~RI~~ed~~~~~v~in~~~~~~~~G~~~~~NDi~g~~D 515 (725) T protein:vir:77 436 NQLNMRADLETYVFQDNLATAMRRDGEIYQSIVNDIYDVPRNVTITLEDGSEKDVQLMAEVVDLATGEKQVLNDIRGRYE 515 (725) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEecCCCCcceeeecccccccccchhHhhhhhcccee Confidence 5555555666666777777788887777776543210 00 10000 1234 Q ss_pred eEEEeCCCccCCHHHHHHHHHHHHhcC--CCCH-HHHHHhhCCCCH-HHHHHHHHHHHHhccccCCCCCccccCCCCCCC Q lcl|Aclame:pro 440 IGVDFDDGVFQDRSALLRFYGQAKTFG--FIPT-VEAIQRIFKVPK-KTAEQWLEEIRKDQIELDPVTISQRAQKRMFGD 515 (517) Q Consensus 440 v~i~f~d~i~~d~~~~~~~~~~~~~~G--~~S~-~~~l~~~~~~~e-eea~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ 515 (517) |.|+=..+...=.++.++.++++..+. ..+. -..+..+....+ +.+++.+++|+.......+... .... T Consensus 516 v~v~~~p~~~s~r~~~~~~l~qll~~~~~~~~~~~~~l~~~~~l~d~~~~~e~~erirkq~~~~~~~q~-------~~~~ 588 (725) T protein:vir:77 516 CYTDVGPSFQSMKQQNRAEILELLGKTPQGTPEYQLLLLQYFTLLDGKGVEMMRDYANKQLIQMGVKKP-------ETPE 588 (725) T ss_pred eEEeeccchHHHHHHHHHHHHHHHHhccccchhHHHHHHHhhccccchHHHHHHHHHHhhhhhhhccCC-------CChh Confidence 444422222222345555556665432 1221 122333333322 3456667777665433322111 1112 Q ss_pred CC Q lcl|Aclame:pro 516 EE 517 (517) Q Consensus 516 ee 517 (517) ++ T Consensus 589 e~ 590 (725) T protein:vir:77 589 EQ 590 (725) T ss_pred hH Confidence 22 No 130 >protein:vir:7321 Length: 556 # NCBI annotation: hypothetical protein # Family: family:all:481 # MgeID: mge:143 # MgeName: epsilon15 # Cross-refs: genbank:acc:NP_848212;genbank:gi:30387383;genbank:GeneID:2641872 Probab=98.64 E-value=1.6e-07 Score=57.89 Aligned_cols=479 Identities=10% Similarity=0.070 Sum_probs=199.7 Q ss_pred hHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccc-cccccC-c-cccccccccChHHHH Q lcl|Aclame:pro 3 VIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVE-YINSQG-K-IQERDYMTLNLRKLS 79 (517) Q Consensus 3 ~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~-~~~~~~-~-~~~~~~~~ln~~~~i 79 (517) |-+..++.+++.... ++ .+-..-...|+.+|.=.-|.+- +...+. . ..+..+..-+.+... T Consensus 1 m~~~~~~~l~~r~~~-----l~-----------~~R~~~e~~w~e~~~~~lP~~~~~~~~~~~~~~~~~~~~~dst~~~a 64 (556) T protein:vir:73 1 MAETEKERLLKQLAQ-----LK-----------NERTSFESHWLDLSDFINPRGSRFLTSDVNRDDRRNTKIVDPTGSMA 64 (556) T ss_pred CChhhHHHHHHHHHH-----HH-----------HHhhHHHHHHHHHHHHhccccCCcCCCCCCcchhhcCccccchHHHH Confidence 333333333332211 11 0111224556665432222111 111110 1 111122233445555 Q ss_pred HHHHhhhhcCCc-------ceeEecCccccccc--ccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe- Q lcl|Aclame:pro 80 ADVLSGLVFNEQ-------CEVYVSDAKDEEKK--DNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD- 149 (517) Q Consensus 80 ~~~~A~ll~~e~-------~~i~~~~~~~~~~~--~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d- 149 (517) ++.+|+-|++-. -++.++++...+.. ....+...+.+...|..++|...+.++..+..++|.+.+.+-.| T Consensus 65 ~~~Las~l~~~ltpp~~~WF~l~~~d~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l~~~~~~ 144 (556) T protein:vir:73 65 QRILSSGMMSGITSPARPWFKLATPDPDMMDYGPVKIWLEVVQRRMNEVFNKSNLYQSLPVMYASLGTFGTGAMAVMEDD 144 (556) T ss_pred HHHHHHHHHHhhcCCCCcccccccCcccccchHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCceeeeeeecC Confidence 555555443321 12444443322211 11223344556678888999999999999999999998865555 Q ss_pred CCeeEEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEE--EEE--EEEe-ecceeeccceEEEEEEEeecCCcc Q lcl|Aclame:pro 150 NGEIEFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYY--TLL--EFHE-WEKTEEGESLYVITNELYKSDNEG 224 (517) Q Consensus 150 ~g~~~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~y--t~l--E~h~-~~~~~~~~~~y~I~n~ly~~~~~~ 224 (517) .+.+++..++...++- ..|..+....+|.. +..+...-...| ..| +.+. +.. ...+..+.|.|.+|-..+.+ T Consensus 145 ~~~~r~~~~~l~~~~~-~~d~~G~vd~i~r~-~~~t~~ql~~~fg~~~l~~~v~~~~~~-~~~~~~~~v~~~V~pr~~~~ 221 (556) T protein:vir:73 145 QDVIRTMPFPIGSYYL-ANSPRGSVDTCIRQ-FSMTVRQMVQEFGLDNVSTSVKGMWEN-GTYETWVEVNHCITPNVNRD 221 (556) T ss_pred CceEEEEEeecceeEE-eeCCCCCeEEEEEE-EeccHHHHHHHcCcccCCHHHHHHHhc-CCccceEEEEEEEecccccc Confidence 3557788899999884 55666665555432 211100000000 000 0000 000 00011223333333211110 Q ss_pred c---cCccccccccc-C-CCCcc--eEEcCCCcceEEEecCCccccccCCCCCCcch-hhhhHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 225 E---IGKRIPLEELY-E-GMQEK--TYIQGLSRPLFNYLKPSGFNNINPHSPLGLGI-TDNSVSTLKKINDTYDQFWWEI 296 (517) Q Consensus 225 ~---lG~~v~l~~~~-~-~l~~~--~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~-~~~~~~lid~lD~~~s~~~~e~ 296 (517) . -+...|..++| + ..... ....|+..-||..+ ..+...++.||+|. -..+.+-++.|+..--....-. T Consensus 222 ~~~~~~~~~p~~s~~~~~~~~~~~vl~esg~~e~P~~~~----Rw~~~~ge~YGrg~P~~~~lgD~k~L~~l~~~~l~~~ 297 (556) T protein:vir:73 222 SGKMDSKNKPYRSVYFESGGDSDKLLRESGFDEFPILAP----RWEVNGEDVYASSCPGMLALGQVKALQVEQKRKAQLI 297 (556) T ss_pred ccccCcccceEEEEEEEecCCCceecccCCcccCCceee----eeeecCCcccccCccHHHhHHHHHHHHHHHHHHHHHH Confidence 0 01111222221 1 11111 11133333334433 35666788999994 8899999999998877777666 Q ss_pred -HhccceeecchHHhccCCCCcccccCccCCcccceeeeecCCCCCCcceEE---ecccChHHHHHHHHHHHHHHHHHhC Q lcl|Aclame:pro 297 -KMGQRTVFVSDVMLRTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDV---THDIRTEQYKEAINQALRTLEMELK 372 (517) Q Consensus 297 -~~~~~~i~v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~---~~dir~e~~~~~l~~~l~~i~~~~g 372 (517) ...++.+.||++......+. .+.-..|.... .+...++.+ ++++ ....+.++.+...|....- T Consensus 298 ~~~~~pp~~v~~~~~~~~~~~---------~pgg~~~~~~~--~~~~~i~p~~~~~~d~--~~~~~~i~~~~~rI~~af~ 364 (556) T protein:vir:73 298 DKATNPPMVAPTSLKNQRVSL---------LPGDVTYLDVI--SGQDGFKPAYLVNPNT--ADLLADIQDTRQTINSAYF 364 (556) T ss_pred HHHhcCceeccccccccceee---------ccCccccccCC--CCccceeeeccccccH--HHHHHHHHHHHHHHHHHhh Confidence 46677788877642111110 00111122111 122233332 3443 2223334443333322211 Q ss_pred CC-ccccccCCCccchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhccCCCCC--CccceEEEeCCCc Q lcl|Aclame:pro 373 LS-VGTFSFDGRSMKTATEIVSENDLTYRTRNDHVYEV-EQFIKGLVISVLELAKTYKLFGGEIP--SAEHIGVDFDDGV 448 (517) Q Consensus 373 ~s-~~~~~~~~~~~~TAtei~a~~~~~~~t~~~~~~~~-~~al~~li~~il~~~~~~~~~~~~~~--~~~~v~i~f~d~i 448 (517) .+ ...++..+....|||||........+...-.-..+ ...|.-|+..++.++.-.+.+...+. ...+|+|.+--.+ T Consensus 365 ~d~~~~l~~~~~~r~TAtEv~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~P~~l~~~~i~v~yis~L 444 (556) T protein:vir:73 365 VDLFMMLQNINTRSMPVEAVIEMKEEKLLMLGPVLERLNDEALNPLIDRVFSIMARKNMLPEPPDVLQGMPLRIEYISVM 444 (556) T ss_pred cchhhhhccCCCCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhcCceeEEEeecHH Confidence 00 01123334456799999999999888876643333 45566677666666553332222111 1334666764443 Q ss_pred cCCHHH-H---HHHHHHHHh--cCC-------CCHHHHH---HhhCCCC------HHHHHHHHHH-HH----HhccccCC Q lcl|Aclame:pro 449 FQDRSA-L---LRFYGQAKT--FGF-------IPTVEAI---QRIFKVP------KKTAEQWLEE-IR----KDQIELDP 501 (517) Q Consensus 449 ~~d~~~-~---~~~~~~~~~--~G~-------~S~~~~l---~~~~~~~------eeea~~el~~-i~----~E~~~~~~ 501 (517) ...-.. . +.+.++.+. +++ +....++ ....|++ ++|+++.-++ .+ .++.+... T Consensus 445 a~aqk~~~~~~i~~~~~~~~~laq~~Pe~~d~id~d~~~~~~a~~~Gvp~~~irs~eev~~~rq~r~~~qq~~~~~~~~~ 524 (556) T protein:vir:73 445 AQAQKSIGLTSLSQTVGFIGQLAQFKPEALDKLDVDQAIDAFSEMSGVSPTVIVPQEQVQGIREERAKQAQAAQAMAMGQ 524 (556) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccChhhHhcCCHHHHHHHHHHHcCCChhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 321111 1 111112221 111 3333333 3444544 3333222111 00 00000000 Q ss_pred CCCcc--ccCCCCCCCCC Q lcl|Aclame:pro 502 VTISQ--RAQKRMFGDEE 517 (517) Q Consensus 502 ~~~~~--~~~~~~~G~ee 517 (517) ...+. ...+-...+.+ T Consensus 525 ~a~~~~~~~~~~~~~~~~ 542 (556) T protein:vir:73 525 AAAQGAKTLSETQTSDPS 542 (556) T ss_pred HHHHHHHHhhhccCCCHH Confidence 00000 00000000111 No 131 >protein:vir:8883 Length: 543 # NCBI annotation: head-tail connector protein # Family: family:all:481 # MgeID: mge:161 # MgeName: gh-1 # Cross-refs: genbank:acc:NP_813772;genbank:gi:29366727;genbank:GeneID:1258836 Probab=98.62 E-value=1.8e-07 Score=57.50 Aligned_cols=466 Identities=9% Similarity=-0.002 Sum_probs=182.3 Q ss_pred HHHHhhcccc--hhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccChHHHHHHHHhhhhcCC- Q lcl|Aclame:pro 14 GGYALSGQTL--KSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLRKLSADVLSGLVFNE- 90 (517) Q Consensus 14 ~~~~~~~~~~--~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~~~i~~~~A~ll~~e- 90 (517) |. .+..+.+ +.+....+ .+-.+.......|+.+|.=-.|.+-.....+......+..=..+...++.+|+-|++- T Consensus 1 ~~-~~~~~~~~~~~~~~r~~-~l~~~R~~~e~~w~e~~~y~lP~~~~~~~~~~~~~~~~~~dst~~~a~~~Laa~l~~~l 78 (543) T protein:vir:88 1 MA-ETKREGLAEEGAKAVYE-RLKNDRVPYETRAENCAKVTIPSLFPKDSDNSSTDYTTPWQAVGARGLNNLSAKVMLAL 78 (543) T ss_pred Cc-ccccCcchHHHHHHHHH-HHHHHHhHHHHHHHHHHHHhccccCCCCCCcccccccccccchHHHHHHHHHHHHHHhh Confidence 11 1111100 00000000 0011112233455555433222211111111111222222244455555555544432 Q ss_pred -cce----eEecCccccc---------ccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeCCe-eE- Q lcl|Aclame:pro 91 -QCE----VYVSDAKDEE---------KKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDNGE-IE- 154 (517) Q Consensus 91 -~~~----i~~~~~~~~~---------~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~g~-~~- 154 (517) |+. +.+++..... ......+...+.+..++..++|...+.++..+..++|.+.+..--|.++ ++ T Consensus 79 tP~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~~~~snf~~~~~~~~~~L~~~G~a~ly~~~~~~~~~~~ 158 (543) T protein:vir:88 79 FPLQSWMKLKVSEWQAKQLVSDPSQLAVVEQGLGMVERILMSYMEANSYRVTLFELIRQLALAGTALIYLPPPDASSNSY 158 (543) T ss_pred cCCCcccccccChHHHhcccCChhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCceeeeeccCcccccee Confidence 222 2222211110 0111122333455567778899999999999999999987643323322 22 Q ss_pred --EEEEcCCeEEEEEEcCCceEEEEEEEEEEEEe------------cCCcEEEEEEEEEeecceeeccceEEEEEEEeec Q lcl|Aclame:pro 155 --FSWALANAFYPLRSNSNGISEGVMKSVTTKVI------------GNKTVYYTLLEFHEWEKTEEGESLYVITNELYKS 220 (517) Q Consensus 155 --i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~------------~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~ 220 (517) +..++-..++ +..|..+...++|........ +.+..-|..+ .|-|.+|.. T Consensus 159 ~~~~~~pl~~y~-v~~d~~G~v~~i~r~~~~~~~~l~~~~~~~v~~~~~~~p~~~~---------------~v~~~V~pr 222 (543) T protein:vir:88 159 NPMKLYTLHNHV-VQRDAFGNVLQIVTLDKVAYAALPEDVRNSLSGGQEYKPEQEL---------------EVYTHIYID 222 (543) T ss_pred cceEEeEcceEE-EeeCCCCCeeeeeeeeeccHHHHhHHhhHHHHHHhhcCCccce---------------EEEEEEEee Confidence 3445555544 455666666655543221100 0000111111 122222211 Q ss_pred CCccccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHH-Hhc Q lcl|Aclame:pro 221 DNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEI-KMG 299 (517) Q Consensus 221 ~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~-~~~ 299 (517) .+........++.+.+-...+..+ .....||+.+ -.+...++.||+|--..+.+-++.|+..--....-. ... T Consensus 223 ~~~~~~~~~~~~~~~~v~~~~~~~--~~~e~P~i~~----Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~~~ 296 (543) T protein:vir:88 223 DESGDFLSYQEIEGVEVDGSDGQY--PQDALPWIAV----RWTKRDGEHYGRSHVEEYLGDLNSLESLNEAMIKFAMISS 296 (543) T ss_pred cCCCcccccccccCeeeecCCCcc--ccccCCceee----eeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHh Confidence 110000000011110000000000 0111223322 355566889999999999999999998776666655 577 Q ss_pred cceeecchHHhccCCCCcccccCccCCcccceeeeecCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccc Q lcl|Aclame:pro 300 QRTVFVSDVMLRTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFS 379 (517) Q Consensus 300 ~~~i~v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~ 379 (517) ++...||++...+-.+-. ......|.. +..++..+..+...-+.......++.+.+.|....=+. .+. T Consensus 297 ~pp~~v~~~g~~~~~~~~--------~~~~g~~v~--g~~~~v~~~~~~~~~~~~~~~~~i~~~~~rI~~af~~~--~~~ 364 (543) T protein:vir:88 297 KVVGLVNPNGITQVRRLV--------KAQTGDFVA--GRKADIEFLQLEKTADFTVAKSVADAIEARLSYVFMLN--SAV 364 (543) T ss_pred cCceeeccccccchhhcc--------cCCCceeec--CCCCcceeeecccccchhHHHHHHHHHHHHHHHHHhhh--hhc Confidence 777777655432211100 011111221 21222122112222233445555555555443322111 222 Q ss_pred cCCCccchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCcc-CCHHHHHH Q lcl|Aclame:pro 380 FDGRSMKTATEIVSENDLTYRTRNDHVYEV-EQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVF-QDRSALLR 457 (517) Q Consensus 380 ~~~~~~~TAtei~a~~~~~~~t~~~~~~~~-~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~-~d~~~~~~ 457 (517) ..+....|||||..+.+...+...-.-..+ ...|.-|+.-++.+..-.+..... +...+.+++--++. -.....++ T Consensus 365 ~~~~~r~TAtEV~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~--p~~~v~~~~vs~l~~l~r~~~~~ 442 (543) T protein:vir:88 365 QRSGERVTAEEIRYVASELEDTLGGVYSILSQELQLPIVRVLLNQLQATQQIPNL--PQEAVEPTVTTGAEALGRGQDLD 442 (543) T ss_pred cCCCCcccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC--chhceeeeEEecHHHHHHHHHHH Confidence 234455799999999988888876533332 334555665555544333333222 22234444432211 11112222 Q ss_pred HHH---HHHhc----CC---CCHHHHHH---hhCCCC-------HHHHHHHHHHHHHhccc---cCCCCCccccCCCCC- Q lcl|Aclame:pro 458 FYG---QAKTF----GF---IPTVEAIQ---RIFKVP-------KKTAEQWLEEIRKDQIE---LDPVTISQRAQKRMF- 513 (517) Q Consensus 458 ~~~---~~~~~----G~---~S~~~~l~---~~~~~~-------eeea~~el~~i~~E~~~---~~~~~~~~~~~~~~~- 513 (517) .+. +.+++ ++ +....++. ...|++ ++|.+++.++..+.++. +.....+...+...+ T Consensus 443 ~l~~~~~~v~~~~~p~vld~id~d~~~~~~a~~~Gv~~~~i~r~~~e~~~~~~q~~~q~~~~~~~~~~~~~~~~~~~~~~ 522 (543) T protein:vir:88 443 KLTQFLNAVATVSQLNGDPDLNVNNIKLRLANAIGIDTAGLLLTEAEKAQAQSQEMLKQGGLNAAAGIGSGVAAQATASP 522 (543) T ss_pred HHHHHHHHHHhccchhhhccCCHHHHHHHHHHHhCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccCh Confidence 222 22211 01 22333333 234652 33333322211111110 000001111111111 Q ss_pred ----------CCCC Q lcl|Aclame:pro 514 ----------GDEE 517 (517) Q Consensus 514 ----------G~ee 517 (517) |... T Consensus 523 ~~~~~~~~~~~~~~ 536 (543) T protein:vir:88 523 EAMESAMDTAGVQP 536 (543) T ss_pred HHHHHHhhhcCCCC Confidence 1111 No 132 >protein:vir:10362 Length: 432 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:183 # MgeName: Xp10 # Cross-refs: genbank:acc:NP_858954;genbank:gi:32128419;genbank:GeneID:2648396 Probab=98.61 E-value=1.9e-07 Score=57.42 Aligned_cols=400 Identities=12% Similarity=0.070 Sum_probs=167.7 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccc-cccccC----h Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQER-DYMTLN----L 75 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~-~~~~ln----~ 75 (517) ||||.++|.+|.+.... . +..... .++. . ..++.++..- .+ .|..... ..+... - T Consensus 7 ~~~~~~~~~~~~~~~~~-~------~~~~~~--~~~~--~--~~~~~~~~~~-s~------~g~~v~~~~al~~~~V~~~ 66 (432) T protein:vir:10 7 LGLLGQLKAMFVPPDPV-D------IGGGQT--FTPV--N--ATARDLGIII-SD------TGAAVNADAIMRLDAVAAC 66 (432) T ss_pred cchhhhhHhhcCCcccc-c------cccccc--cccC--c--chhhhhcccc-cc------cCcccchhhhhcchHHHHH Confidence 99999999999653321 1 111000 0000 0 0011111100 00 0000000 011111 1 Q ss_pred HHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHH-HHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeCCee- Q lcl|Aclame:pro 76 RKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQH-VFQHNKFIKNLSDYLEPTFALGGLTVRPYVDNGEI- 153 (517) Q Consensus 76 ~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~-~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~g~~- 153 (517) -..||+..|++ |..+.-.+.+... ......+...|+. --.......-++.++.+.+..|.+++.+..++|++ T Consensus 67 i~~Ia~~ia~l----p~~~y~~~~~g~~--~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~~~~~~g~~~ 140 (432) T protein:vir:10 67 VKLVSQAIAAM----PLTMYMRTPDGRK--EAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYVRKVVTDGRIE 140 (432) T ss_pred HHHHHHhhhhC----ceeEEEecCCCcc--cccccHHHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEEEEEecCCcEE Confidence 15666666655 3332211111100 1111222222321 00001112233445667777899888887776664 Q ss_pred EEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccc Q lcl|Aclame:pro 154 EFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLE 233 (517) Q Consensus 154 ~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~ 233 (517) .+..++|+.+-++. +.++. ..|+. ... +| ..+.+ T Consensus 141 ~L~~l~~~~v~v~~-~~~g~-----------------~~y~~---~~~------~g------------------~~~~~- 174 (432) T protein:vir:10 141 SLQYLANDRLTITT-DTKGN-----------------TAYRY---RRT------DG------------------QMIDI- 174 (432) T ss_pred EEEEEcCCceEEEE-cCCCc-----------------EEEEE---Eec------Cc------------------eEEEE- Confidence 46678888777642 22221 11110 000 00 00000 Q ss_pred cccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHH-HHhc-cceeecchHHhc Q lcl|Aclame:pro 234 ELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWE-IKMG-QRTVFVSDVMLR 311 (517) Q Consensus 234 ~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e-~~~~-~~~i~v~~~~l~ 311 (517) + ++ -+.|++.+.. +..+|+|-+.-+...|.... ...++... |+.| ++..++ . T Consensus 175 --~---~~----------~iih~~~~~~-----dg~~G~spi~~~~~~i~~~~-~~~~~~~~~f~ng~~~~gil-----~ 228 (432) T protein:vir:10 175 --P---KQ----------QIWKIMGYSL-----DGENGLSAIRYGAQIFGTAI-AAEAQAARAFRNGQLQSVYY-----Q 228 (432) T ss_pred --c---Cc----------cEEEecCCCC-----CCcccccHHHHHHHHHHHHH-HHHHHHHHHHhcCCCcceEE-----e Confidence 0 00 1234443211 22468888887776665543 33344443 4544 333332 2 Q ss_pred cCCCCcccccCccCCcccceeeeecC------CCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCcc Q lcl|Aclame:pro 312 TVPDESGMPPPQVFDPDVNVYKSIRM------GTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSM 385 (517) Q Consensus 312 ~~~~~~~~~~~~~fd~~~~~y~~~~~------~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~ 385 (517) ....-.... ++.-.+.|..... =+++-.++.++......+..+..+...++|+...|++|..+|+...+. T Consensus 229 ~~~~l~~e~----~~~~~~~~~~~~nag~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~afgVPp~~lg~~~~~t 304 (432) T protein:vir:10 229 IDRFLTDDQ----YDSFAKKVSGSVEAGRAPLLEGGMDVKSLGLNPVDAQLLQSRQYSVESICRFFGVPPSMIGHSSAGT 304 (432) T ss_pred cCCCCCHHH----HHHHHHHHhhhhhCCCceecCCCceEEEccCChHHHHHHHHHHHHHHHHHHHhCCCHHHcCCccCCc Confidence 211110000 1100111111110 022334555666556677888888888899999999999998765432 Q ss_pred -chHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHH Q lcl|Aclame:pro 386 -KTATEIVSENDLTY-RTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAK 463 (517) Q Consensus 386 -~TAtei~a~~~~~~-~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~ 463 (517) .+++.+.......+ .++.-+...++.+|.. .++.......+.+.++.+.-+..|..+.++...+++ T Consensus 305 ~~~~sn~e~~~~~f~~~tl~P~~~~ie~~ln~------------kL~~~~~~~~~~~~fd~~~ll~~d~~~r~~~~~~~~ 372 (432) T protein:vir:10 305 TSWGSGIESQQLGFLSMTLSPWLRRIEQSIAL------------NLLSPAERRRYFADFDTSALLRADSAARSSYYSQLV 372 (432) T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHh------------hhcCccccCceEEEeechhhhccCHHHHHHHHHHHH Confidence 23333332222222 2333333333333332 122222122344555555556678899999999999 Q ss_pred hcCCCCHHHHHHhhCCCCHHH-HHHHH--H----HHH--HhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 464 TFGFIPTVEAIQRIFKVPKKT-AEQWL--E----EIR--KDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 464 ~~G~~S~~~~l~~~~~~~eee-a~~el--~----~i~--~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) ++|+|+.-+++..+ |+..-+ -...+ . -+. .++.+.+|..... .+..+-+.+ T Consensus 373 ~~G~~T~NE~R~~~-glppi~g~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~--~~~~~~~~~ 432 (432) T protein:vir:10 373 NNGLMTRDEAREIE-GLPKLGGNAAVLTVQSAMVPLDSIGLQASPEPASGLG--NQQQDKVSK 432 (432) T ss_pred hCCCCCHHHHHHHh-CCCCCCCCcceEeecCcccchhhhcccCCCCCCCCCC--CcccccccC Confidence 99999999976543 543211 00111 0 011 1111111111000 000000001 No 133 >protein:vir:80644 Length: 551 # NCBI annotation: gp23 # Family: family:all:2446 # MgeID: mge:1883 # MgeName: A511 # Cross-refs: genbank:acc:YP_001468463;genbank:gi:157325038;genbank:GeneID:5601615 Probab=98.60 E-value=2.2e-07 Score=57.12 Aligned_cols=441 Identities=10% Similarity=0.068 Sum_probs=174.2 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHH----H--------------hcCCCccccccccc Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLR----Q--------------YEGDYPQVEYINSQ 62 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~----~--------------Y~g~~~~~~~~~~~ 62 (517) |+||++++..=+.+.. ....-.+.+...|++-+-+.+.|+...+ = |.-++..+.+.+.. T Consensus 5 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~a~~~~~~~~~~~~~~~~~r~~~~~~~~l~ 81 (551) T protein:vir:80 5 LGLFESIRLVGVNKSD---AVKHIEVDDNYSIAIQQREQEQISKAMNNKEVAYSQPVIGSMSANPGFKTKPSIRNNQDLH 81 (551) T ss_pred hhhHHHhhhccCChhh---cccccccccceeeecccccHHHHHHhhccCcceeecccccceecCcccccCccccChhHHH Confidence 9999888721111000 0000111111222222222222332211 0 11010000000000 Q ss_pred CccccccccccChHHHHHHHHhhhhcC--Cc---------ceeEecCcc--cccccccchhHHHHHHHHHHhh-----hh Q lcl|Aclame:pro 63 GKIQERDYMTLNLRKLSADVLSGLVFN--EQ---------CEVYVSDAK--DEEKKDNSFKTAHEFIQHVFQH-----NK 124 (517) Q Consensus 63 ~~~~~~~~~~ln~~~~i~~~~A~ll~~--e~---------~~i~~~~~~--~~~~~~~~~~~~~~~l~~~l~~-----n~ 124 (517) . -.+.....++.+++++..|+.+.. .. -.|.+.+.. .............++|....-+ .. T Consensus 82 ~--~~~~~~~npiv~~~I~~ia~~IA~~~~~~~~~~~g~~~~i~~kd~~~~~~~~~~~~~~~i~~~l~~pn~~~~p~~~s 159 (551) T protein:vir:80 82 G--VLKKFGGNIILNAIINTRSNQVSMYCKPARHSEKGVGFEVRLKDLDKKPTSHDEATIKRIESFIEKTGVDNDINRDS 159 (551) T ss_pred H--HHHHhhcCHHHHHHHHHHHHHHhhhhhhhhhhcCCCCceEEecccCcccChhHHHHHHHHHHHHHhcCCCCCCccch Confidence 0 000011123334444555544431 11 122222111 0001111112223333322111 12 Q ss_pred HHHHHHHHHHHHHhhCCEEEEEEEe-CCee-EEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeec Q lcl|Aclame:pro 125 FIKNLSDYLEPTFALGGLTVRPYVD-NGEI-EFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWE 202 (517) Q Consensus 125 f~~~~~~~~~~a~~~G~~~~k~~~d-~g~~-~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~ 202 (517) |...+..++.+.+..|.+++.+..| .|++ .+..++|+.+-++...++.....-+ +|.. . T Consensus 160 ~~~f~~~lv~dlll~Gnay~~i~rd~~G~~~~L~~l~p~~V~v~~~~~g~~~~~~~-------------~y~~--~---- 220 (551) T protein:vir:80 160 FSSFVKKIVRDTYMYDQVNFEKVFNRNQSMVRFVAKDPTTIFFATTADGKIPDNGN-------------RFVQ--V---- 220 (551) T ss_pred HHHHHHHHHHHHHhcCCEEEEEEECCCCcEEEEEEeCCceeEEEECCccccccCce-------------EEEE--E---- Confidence 3445556677778889998888776 4554 4788888888775433332211101 1100 0 Q ss_pred ceeeccceEEEEEEEeecCCccccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHH Q lcl|Aclame:pro 203 KTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTL 282 (517) Q Consensus 203 ~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~li 282 (517) +. + +..+.+ . +.+ ++||+.+ +-......++|+|.+.-+...| T Consensus 221 ---------------~~-g-----~~~~~~---~---~~e----------iiH~~~n-~~~~~~~~~~G~spi~~a~~~i 262 (551) T protein:vir:80 221 ---------------ID-Q-----KIVATF---N---ARE----------MAFAVRN-PRSDIYATGYGYPELEIALKQF 262 (551) T ss_pred ---------------eC-C-----cEEEEE---c---ccc----------eEEeccc-CCCCcccccccccHHHHHHHHH Confidence 00 0 000000 0 001 2344321 0001123567999998888877 Q ss_pred HHHHHHHHHHHHHHHhc-cceee--cchHHhccCCCCcccccCccCCcccceeeeec-------CCCCCCcceEEecccC Q lcl|Aclame:pro 283 KKINDTYDQFWWEIKMG-QRTVF--VSDVMLRTVPDESGMPPPQVFDPDVNVYKSIR-------MGTDEEFVKDVTHDIR 352 (517) Q Consensus 283 d~lD~~~s~~~~e~~~~-~~~i~--v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~-------~~~~~~~v~~~~~dir 352 (517) .....+-.-..+-|+.| ++.-+ ++... ...+..-......|. ..|.+.. ...++-.++.++.... T Consensus 263 ~~~~a~~~~~~~~f~Ng~~p~giL~~~~~~--~lt~e~~~~lk~~~~---~~~~G~~nag~~~vl~~~g~~~~~l~~~~~ 337 (551) T protein:vir:80 263 IAHENTEAFNDRFFSHGGTTRGILQIKAAQ--QQSQHALEIFKREWK---NSLSGINGSWQIPVVSAEDVKFVNMTPSAR 337 (551) T ss_pred HHHHHHHHHHHHHHHcCCCcceEEEEcCCC--CCCHHHHHHHHHHHH---HHhcCccccCccccccCCCceEEEccCChh Confidence 66544433334445665 44432 22110 000000000000010 0122211 1112223444555556 Q ss_pred hHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhccC Q lcl|Aclame:pro 353 TEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVSENDLTYRTRND-HVYEVEQFIKGLVISVLELAKTYKLFG 431 (517) Q Consensus 353 ~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a~~~~~~~t~~~-~~~~~~~al~~li~~il~~~~~~~~~~ 431 (517) ..++.+..+...+.|+...|++|..+|+.+.+..++.+..+.. +.++.. ....++.+|.-++..|-...+. .++. T Consensus 338 D~qfle~~~~~~~~Ia~aFgVPp~~lG~~~~~~~~~~~~~s~t---~sn~e~~~~~f~~~tL~P~~~~ie~~ln~-~L~~ 413 (551) T protein:vir:80 338 DMEFEKWLNYLINVISALYGIDPAEINIPNNGGATGSKGGSLN---EGNSAEKNQASKNKGLQPLLGFIEDFINK-HIVA 413 (551) T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHcCcccccccccccccccc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHh-hhcc Confidence 6778888888889999999999999997654433332222211 111111 2234444555555444332221 1221 Q ss_pred CCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCCHHHHHHhhCCCCH--HHHHHHH-------------------H Q lcl|Aclame:pro 432 GEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTVEAIQRIFKVPK--KTAEQWL-------------------E 490 (517) Q Consensus 432 ~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~~~l~~~~~~~e--eea~~el-------------------~ 490 (517) .....+.++|+.....+..+ ...+.+++.+|+|+.-+++.+. |+.. +..+.-+ + T Consensus 414 ---~~~~~~~f~f~~~~~~~~~~-~~~~~~~~~~g~lT~NE~R~~~-gl~P~~egGD~~~~~~~~~~~~~~~~~~~~~~~ 488 (551) T protein:vir:80 414 ---EFGDKYTFQFVGGDIKSELE-SVKILAEKAKVAMTVNEVRKEL-NLPGDVIGGDIPLNGVIVQRIGQLMQQEQFEHE 488 (551) T ss_pred ---ccCCceEEEeeccChhhHHH-HHHHHHHHhcCCcCHHHHHHHh-CCCCCCCCCceeecccccccccccccccCcchh Confidence 11235778888766666444 4445567778999999976544 5422 1111100 0 Q ss_pred HHH-------Hhccc-cCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 491 EIR-------KDQIE-LDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 491 ~i~-------~E~~~-~~~~~~~~~~~~~~~G~ee 517 (517) +.+ ...+. ..+...++..+....|+.| T Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 523 (551) T protein:vir:80 489 KQQSNLQMLQEQTGNRVSTDVEDIPDGKDTTGDIG 523 (551) T ss_pred hhhhccccccCcCCCCCCCCCCCCCCccccCCCcc Confidence 000 00000 1111111111111112222 No 134 >protein:vir:94709 Length: 522 # NCBI annotation: head to tail connector # Family: family:all:481 # MgeID: mge:1528 # MgeName: K1F # Cross-refs: genbank:acc:YP_338118;genbank:gi:77118196;genbank:GeneID:3707732 Probab=98.59 E-value=2.2e-07 Score=57.08 Aligned_cols=456 Identities=11% Similarity=0.021 Sum_probs=191.6 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccChHHHHH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLRKLSA 80 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~~~i~ 80 (517) |-- +.-| ..++++..-+. +-.+...-...|+.+|.=.-|.+-.....+....+.+..=+.+...+ T Consensus 1 ~~~----~~~~-------~~~~~~~r~~~----l~~~R~~~e~~w~e~~~y~lP~~~~~~~~~~~~~~~~~~dst~~~a~ 65 (522) T protein:vir:94 1 MAE----REGF-------AAEGAKAVYDR----LKNGRQPYETRAQNCAAVTIPSLFPKESDNSSTEYTTPWQAVGARCL 65 (522) T ss_pred Ccc----cchh-------hHHHHHHHHHH----HHHHhhHHHHHHHHHHHHhcccccCCCCCcccccccccccccHHHHH Confidence 211 0000 00111110000 00111122455666654333322222222222223333335556666 Q ss_pred HHHhhhhcCC--cce----eEecCcccc---------cccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEE Q lcl|Aclame:pro 81 DVLSGLVFNE--QCE----VYVSDAKDE---------EKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVR 145 (517) Q Consensus 81 ~~~A~ll~~e--~~~----i~~~~~~~~---------~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k 145 (517) +.+|+-|++- |.+ +.+++.... .......+...+.+...+..++|...+.++..+..++|.+.+. T Consensus 66 ~~Las~l~~~ltP~~~WFrl~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~~~~snf~~~~~~~~~~L~~~G~a~l~ 145 (522) T protein:vir:94 66 NNLAAKLMLALFPQSPWMRLTVSEYEAKTLSQDSEAAARVDEGLAMVERVLMAYMETNSFRVPLFEALKQLIVSGNCLLY 145 (522) T ss_pred HHHHHHHHhhcCCCCcccccccchhhhhccCcccchhHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCcEeEe Confidence 6666655443 111 121111000 0011112333344556678889999999999999999998764 Q ss_pred EEEeC-C-eeEEEEEcCCeEEEEEEcCCceEEEEEEEEEEEE-----------ecCC------cEEEEEEEEEeecceee Q lcl|Aclame:pro 146 PYVDN-G-EIEFSWALANAFYPLRSNSNGISEGVMKSVTTKV-----------IGNK------TVYYTLLEFHEWEKTEE 206 (517) Q Consensus 146 ~~~d~-g-~~~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~-----------~~~~------~~~yt~lE~h~~~~~~~ 206 (517) +-=+. + ...+.++|-..++ +..|..+....+|....... ..+. -.+|+.++.+ T Consensus 146 ~~~~~~~~~~~~~~~pl~~y~-v~~d~~G~vd~i~r~~~~~~~~l~~~~~~~~~~~~~~p~~~v~v~~~v~~~------- 217 (522) T protein:vir:94 146 IPEPEQGTYSPMRMYRLVSYV-VQRDAFGNILQIVTIDKVAFSALPEDVKSQLNADDYEPDTELEVYTHIYRQ------- 217 (522) T ss_pred eeccCCCceeeEEEEEcceEE-EeeCCCcCeEEEeeeeeccHHhcchHHHHHHhcccCCccceEEEEEEEEee------- Confidence 32221 2 3457888888866 45566665555543221100 0000 1122222211 Q ss_pred ccceEEEEEEEeecCCccccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHH Q lcl|Aclame:pro 207 GESLYVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKIN 286 (517) Q Consensus 207 ~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD 286 (517) .+.|. .|..- -|..+++++- -.|+...||+.+ -.+..+++.||+|--..+.+-++.|+ T Consensus 218 -~~~~~----~~~~~----~g~~~~~~~~---------~~~~~e~P~~~~----Rw~~~~ge~YGrgp~~~~l~D~k~L~ 275 (522) T protein:vir:94 218 -DDEYL----RYEEV----EGIEVTGTDG---------SYPLTACPYIPV----RMVRLDGEDYGRSYCEEYLGDLNSLE 275 (522) T ss_pred -CCcee----EEeec----cCceecccCC---------CCccccCCceee----eeeecCCCccccchHHHHHHHHHHHH Confidence 11221 12111 0223322210 012222333333 24556688999999999999999999 Q ss_pred HHHHHHHHHH-HhccceeecchHHhccCCCCcccccCccCCcccceeeeecCCCCCCcceEEecc--cChHHHHHHHHHH Q lcl|Aclame:pro 287 DTYDQFWWEI-KMGQRTVFVSDVMLRTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHD--IRTEQYKEAINQA 363 (517) Q Consensus 287 ~~~s~~~~e~-~~~~~~i~v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~d--ir~e~~~~~l~~~ 363 (517) ..--....-. ...++...||++.+....+-. ......+.. +..+ .++.++.. -+...-...++.+ T Consensus 276 ~l~~~~l~~~~~~~~p~~~v~~~g~~~~~~~~--------~~~~g~~v~--g~~~--~v~~~~~~~~~~~~~~~~~i~~~ 343 (522) T protein:vir:94 276 TITEAITKMAKVASKVVGLVNPNGITQPRRLN--------KAATGEFVA--GRVE--DINFLQLTKGQDFTIAKSVADAI 343 (522) T ss_pred HHHHHHHHHHHHHhCCceeecccccccchhee--------ccCCceeec--CCcc--cceeeecccccchhHHHHHHHHH Confidence 8777766665 577888888654422211100 001111221 2222 23323211 1233344445444 Q ss_pred HHHHHHHhCCCccccccCCCccchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhccCCCCCCccceEE Q lcl|Aclame:pro 364 LRTLEMELKLSVGTFSFDGRSMKTATEIVSENDLTYRTRNDHVYE-VEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGV 442 (517) Q Consensus 364 l~~i~~~~g~s~~~~~~~~~~~~TAtei~a~~~~~~~t~~~~~~~-~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i 442 (517) .+.|....-+. .++..+....|||||..+.+...+...-.-.. -...|.-|+.-++.+..-.+.... ++...+.+ T Consensus 344 ~~rI~~af~~~--~~~~~~~~r~TAtEV~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~--~p~~~v~v 419 (522) T protein:vir:94 344 EQRLGWAFLLN--SAVQRNAERVTAEEIRYVAGELEATLGGVYSVQSQELQLPIVRVLMNQLQSAGMIPD--LPKEAVEP 419 (522) T ss_pred HHHHHHHHhhh--hhccCCCccccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--CCcccEEe Confidence 44443333221 22223445679999999998888887653333 333455566555555433232222 22333666 Q ss_pred EeCCCccCCH-HHHHHHHHHHHh--cCC--------CCHHHH---HHhhCCCC-------HHHHHHHHHHHHH---hccc Q lcl|Aclame:pro 443 DFDDGVFQDR-SALLRFYGQAKT--FGF--------IPTVEA---IQRIFKVP-------KKTAEQWLEEIRK---DQIE 498 (517) Q Consensus 443 ~f~d~i~~d~-~~~~~~~~~~~~--~G~--------~S~~~~---l~~~~~~~-------eeea~~el~~i~~---E~~~ 498 (517) ++--++..-- ...++.+.+..+ +++ +....+ +....|++ ++|.++..++..+ .+++ T Consensus 420 ~~~s~La~~qr~~~~~~l~~~~~~ia~l~P~~~~~~id~d~~~~~~a~~~Gv~~~~ivr~~ee~~~~~~q~~~~~~~~~~ 499 (522) T protein:vir:94 420 TVSTGLEALGRGQDLEKLTQAVNMMTGLQPLSQDPDINLPTLKLRLLNALGIDTAGLLLTQDEKIQRMAEQSSQQAVVQG 499 (522) T ss_pred eEecHHHHHHHHHHHHHHHHHHHHHHhccchhhhhcCCHHHHHHHHHHHcCCChhhccCCHHHHHHHHHHHHHHHHHHHH Confidence 6543332110 011111111110 111 222222 23444552 3344333332211 1111 Q ss_pred cCCCCCcccc-CCCCCCCCC Q lcl|Aclame:pro 499 LDPVTISQRA-QKRMFGDEE 517 (517) Q Consensus 499 ~~~~~~~~~~-~~~~~G~ee 517 (517) +.....+... .....|++. T Consensus 500 ~~~~~~~~~a~~~~~~~~~~ 519 (522) T protein:vir:94 500 ASAAGANMGAAVGQGAGEDM 519 (522) T ss_pred HHHHHHHhhhhhhcccchhh Confidence 1111111111 111122222 No 135 >protein:vir:78696 Length: 542 # NCBI annotation: head to tail connector # Family: family:all:481 # MgeID: mge:1856 # MgeName: Syn5 # Cross-refs: genbank:acc:YP_001285446;genbank:gi:148724480;genbank:GeneID:5220167 Probab=98.54 E-value=3.3e-07 Score=56.09 Aligned_cols=467 Identities=10% Similarity=0.039 Sum_probs=194.1 Q ss_pred hHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccChHHHHHHH Q lcl|Aclame:pro 3 VIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLRKLSADV 82 (517) Q Consensus 3 ~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~~~i~~~ 82 (517) |-+..|..+.+ ++ .+...-...|+.+|.=..|.+-.....+......+..=+.+...++. T Consensus 1 mk~~a~~r~~~---------l~-----------~~R~~~e~~w~e~~~y~lP~~~~~~~~~~~~~~~~~~dstg~~a~~~ 60 (542) T protein:vir:78 1 MKGLAQARYSA---------MR-----------ADREDFLDMARRCAALTLPYLLTEDGHASGGRLQQPYQSLGSKGVNA 60 (542) T ss_pred ChhHHHHHHHH---------HH-----------HHhhHHHHHHHHHHHHhccccCCCCCCcccccccccccchHHHHHHH Confidence 11111222211 11 01112345666655432222211111111111222223445566666 Q ss_pred HhhhhcCCc--c-----eeEecCccccc---cc-------ccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEE Q lcl|Aclame:pro 83 LSGLVFNEQ--C-----EVYVSDAKDEE---KK-------DNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVR 145 (517) Q Consensus 83 ~A~ll~~e~--~-----~i~~~~~~~~~---~~-------~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k 145 (517) +|+-|++-. | ++.+++....+ .+ +...+...+.+...+..++|...+.++..+..++|.+.+ T Consensus 61 Laa~l~~~ltpp~~~WF~l~~~d~~l~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l- 139 (542) T protein:vir:78 61 LSSKLMLSLFPIQTSFFKLQINDAEIASVPELTPEVRSEIDMNLSKMEKMVMQQIAESSDRVQLTAAMKHLIVTGNVLV- 139 (542) T ss_pred HHHHHHHhhcCCCCccccccCCHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCeEEE- Confidence 665554331 1 12333221111 01 111122334556778889999999999999999999765 Q ss_pred EEEeCCeeEEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEE--EEEE--EeecceeeccceEEEEEEEeecC Q lcl|Aclame:pro 146 PYVDNGEIEFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYT--LLEF--HEWEKTEEGESLYVITNELYKSD 221 (517) Q Consensus 146 ~~~d~g~~~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt--~lE~--h~~~~~~~~~~~y~I~n~ly~~~ 221 (517) |.+.+. +..+|-..++ +..|..+....+|... ..+...-...|- .+.- ..... ...+-.+.|.+.++... T Consensus 140 -~~~~~~--~~~~pl~~y~-v~~d~~G~vd~v~r~~-~~t~~ql~~~fg~~~l~~~~~~~~~-~~~~~~~~v~~~v~pr~ 213 (542) T protein:vir:78 140 -FAGKKT--LKVYPLDRYV-IERDGDGNVIEIITRE-LVDRSLLPAEFQKQSLLEGKDSNAV-GEDGPKFGVAQGKGGRN 213 (542) T ss_pred -EecCCC--ceEEecceeE-EeeCCCCCeEEEeeee-ecCHHHHHHhhccccCchHHHhhcc-ccCCCeEEEEEEeeccc Confidence 566554 5567777755 4566666666655432 211000000000 0000 00000 00011223333333221 Q ss_pred CccccCccccc----ccccCCCCcc-----eEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHH Q lcl|Aclame:pro 222 NEGEIGKRIPL----EELYEGMQEK-----TYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQF 292 (517) Q Consensus 222 ~~~~lG~~v~l----~~~~~~l~~~-----~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~ 292 (517) +. ...+.+.. ..++..+... ....|+...||+.+ -.+...++.||+|--..+.+-++.|+..--.. T Consensus 214 ~~-~~~~~~~~~~~~~s~~~e~~g~~v~~~~~e~g~~~~P~i~~----Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~ 288 (542) T protein:vir:78 214 DA-EVFTCCKLVDGQHRWHQECDGKEIKGSRSSSPLKHSPWLPL----RFNVVDGESYGRGRVEEFFGDLSSLDALTRSL 288 (542) T ss_pred CC-ccccccccCCCeEEEEEEeccccccccccccccccCCceee----eeeecCCCccccchHHHHHHHHHHHHHHHHHH Confidence 11 11111111 0111100000 11123333334333 24556688999999999999999999776666 Q ss_pred HHHH-HhccceeecchHHhccCCCCcccccCccCCcccceeeeecCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 293 WWEI-KMGQRTVFVSDVMLRTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMEL 371 (517) Q Consensus 293 ~~e~-~~~~~~i~v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~ 371 (517) ..-. ...++...||++.+....+ ........|.. +..++.++..+....+...-...++.+.+.|.... T Consensus 289 l~~~~~a~~pp~lv~~~g~~~~~~--------~~~~~~g~iv~--g~~~~v~~~~~~~~~~~~~~~~~i~~~~~rI~~aF 358 (542) T protein:vir:78 289 IEGSAAAAKVVFMVSPSATTKPQS--------LARAGTGAIIQ--GRAEDVSVVQANKGADFRTVQEMIRDLSQRISDAF 358 (542) T ss_pred HHHHHHHhcCceeeccccccchhh--------cccCCCceeec--CCccceeeeecccccchhHHHHHHHHHHHHHHHHh Confidence 6655 5677777775543211110 01111111221 11121111112221233334444555544444332 Q ss_pred CCCccccccCCCccchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccC Q lcl|Aclame:pro 372 KLSVGTFSFDGRSMKTATEIVSENDLTYRTRNDHVYEV-EQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQ 450 (517) Q Consensus 372 g~s~~~~~~~~~~~~TAtei~a~~~~~~~t~~~~~~~~-~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~ 450 (517) -+. . .-+....|||||....+...+...-.-..+ ...|.-|+.-++.++.-.+..... +..-|.+++--++.. T Consensus 359 l~~--~--~~d~~rvTAtEV~~r~~E~~~~LG~v~~rl~~E~L~Pli~R~~~il~r~g~lP~~--p~~lv~~~~~s~La~ 432 (542) T protein:vir:78 359 LIL--N--VRQSERTTATEVREVQMELDRQLSGIYGSLTVELLTPYLNRKLHLMQRSKQLPSL--PKGLVMPTVVAGLGG 432 (542) T ss_pred ccc--c--cCCcccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC--chhceeeeeechHHH Confidence 221 1 123345699999999999888877654444 445555666666555433332222 222356665544411 Q ss_pred CH-HHHH---HHHHHHHhc--C------CCCHHHHHH---hhCCCC-------HHHHHHHHHHHHHhcc----------- Q lcl|Aclame:pro 451 DR-SALL---RFYGQAKTF--G------FIPTVEAIQ---RIFKVP-------KKTAEQWLEEIRKDQI----------- 497 (517) Q Consensus 451 d~-~~~~---~~~~~~~~~--G------~~S~~~~l~---~~~~~~-------eeea~~el~~i~~E~~----------- 497 (517) -- ...+ .+..+.++. | .+....++. ...|++ +|+++++.++.++.+. T Consensus 433 ~~r~~~~~~l~~~~~~i~~~~~p~~l~~~id~d~~~~~~a~~~Gvp~~~i~~s~e~~~~~~~q~q~~~~~~al~~~a~~~ 512 (542) T protein:vir:78 433 VGRGEDRAALIEFMQTVGQAMGPEALQQFIDPTEFLKRLAAASGIDTLNLVKSPETMANEAQQAQQQQMTASLMGQAGQL 512 (542) T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhHHhcCCHHHHHHHHHHHcCCCHhhccCCHHHHHHHHHHHHHHHHHHHHHHhhhhc Confidence 10 0111 111122211 1 122333332 234654 3544444444322221 Q ss_pred ccCCCCCc---------cccCCCCCCCCC Q lcl|Aclame:pro 498 ELDPVTIS---------QRAQKRMFGDEE 517 (517) Q Consensus 498 ~~~~~~~~---------~~~~~~~~G~ee 517 (517) ...+.... +-...+..-+|| T Consensus 513 a~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 541 (542) T protein:vir:78 513 AKSPIGEKMMQQINAPGQEAPAGPQTGED 541 (542) T ss_pred cccccccchhhhcCCCCcCCCCCCccccc Confidence 11111111 111122333344 No 136 >protein:vir:10447 Length: 536 # NCBI annotation: head-to-tail joining protein # Family: family:all:481 # MgeID: mge:184 # MgeName: phiA1122 # Cross-refs: genbank:acc:NP_848294;genbank:gi:30387485;genbank:GeneID:1733984 Probab=98.51 E-value=3.9e-07 Score=55.72 Aligned_cols=464 Identities=9% Similarity=0.030 Sum_probs=187.5 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccChHHHHH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLRKLSA 80 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~~~i~ 80 (517) |.= ++. ++ ..++++..-+. +-.+...-...|+.++.=..|.+-.....+......+..=+.+...+ T Consensus 1 m~~-~~~-~~--------~~~~~~~r~~~----l~~~R~~~e~~w~e~~~~~lP~~~~~~~~~~~~~~~~~~dst~~~a~ 66 (536) T protein:vir:10 1 MAE-KRT-GL--------AEDGAKSVYER----LKNDRAPYETRAQNCAQYTIPSLFPKDSDNASTDYQTPWQAVGARGL 66 (536) T ss_pred Ccc-hhh-ch--------hHHHHHHHHHH----HHHHhhHHHHHHHHHHHHhcccccCCCCCcccccccccccccHHHHH Confidence 111 000 00 00011110000 00111112445655543322222111122222222233334555566 Q ss_pred HHHhhhhcCC--cce----eEecCccccccc---------ccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEE Q lcl|Aclame:pro 81 DVLSGLVFNE--QCE----VYVSDAKDEEKK---------DNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVR 145 (517) Q Consensus 81 ~~~A~ll~~e--~~~----i~~~~~~~~~~~---------~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k 145 (517) +.+|+-|++- |++ +.++++...+.. ....+...+.+...+..++|...+.++..+..++|.+.+. T Consensus 67 ~~Laa~l~~~ltP~~~WFrl~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~ly 146 (536) T protein:vir:10 67 NNLASKLMLALFPMQTWMRLTISEYEAKQLLSDPDGLAKVDEGLSMVERIIMNYIESNSYRVTLFEALKQLVVAGNVLLY 146 (536) T ss_pred HHHHHHHHhhhcCCCcccccccChhhhhccccchhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCcEeEE Confidence 6666544432 222 222222221111 1112334456667788899999999999999999988764 Q ss_pred EEEeC--CeeEEEEEcCCeEEEEEEcCCceEEEEEEEEEEE-------------EecCCcEEEEEEEEEeecceeeccce Q lcl|Aclame:pro 146 PYVDN--GEIEFSWALANAFYPLRSNSNGISEGVMKSVTTK-------------VIGNKTVYYTLLEFHEWEKTEEGESL 210 (517) Q Consensus 146 ~~~d~--g~~~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~-------------~~~~~~~~yt~lE~h~~~~~~~~~~~ 210 (517) .--+. +...+..+|-..++ +..|..+....+|...... ....+.+++..+++.+.-......+. T Consensus 147 ~~e~~~~~~~~~~~~pl~~~~-v~~d~~G~vd~i~r~~~~t~~~l~~~fg~~~~~~~~~~~~~~~v~v~~~V~~~~~~~~ 225 (536) T protein:vir:10 147 LPEPEGSNYNPMKLYRLSSYV-VQRDAFGNVLQMVTRDQIAFGALPEDIRKAVEGQGGEKKADETIDVYTHIYLDEASGE 225 (536) T ss_pred EeeCCCCceeeEEEEEcCeEE-EeeCCCCCeeEEeeeeeccHHHHHHhhhhhhcccccccCcccceEEEEEEEEecCCCc Confidence 32222 23346778888877 4556666555554322111 01112223333333221111112233 Q ss_pred EEEEEEEeecCCccccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHH Q lcl|Aclame:pro 211 YVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYD 290 (517) Q Consensus 211 y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s 290 (517) |.+.+++. |..++..+ ...++...||+.+ -.+..+++.||+|--..+.+-++.|+..-- T Consensus 226 ~~~~~e~~--------g~~v~~~~---------g~~~f~~~P~i~~----Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~ 284 (536) T protein:vir:10 226 YLRYEEVE--------GMEVQGSD---------GTYPKEACPYIPI----RMVRLDGESYGRSYIEEYLGDLRSLENLQE 284 (536) T ss_pred EEEEEeec--------Cccccccc---------cccccccCCceee----eeeecCCCccccchHHHHHHHHHHHHHHHH Confidence 32221111 22222211 0112222233333 245566889999999999999999997655 Q ss_pred HHHH-HHHhccceeecc-hHHhccCCCCcccccCccCCcccceeeeecCCCCCCcceEEecccChHHHHHHHHHHHHHHH Q lcl|Aclame:pro 291 QFWW-EIKMGQRTVFVS-DVMLRTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLE 368 (517) Q Consensus 291 ~~~~-e~~~~~~~i~v~-~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~ 368 (517) .... .....++...|+ ..++....- -......|.+ +..++.++..++..-+...-...++.+.+.|. T Consensus 285 ~~l~~~~~a~~~~~lv~p~g~~~~~~~---------~~~~~g~~v~--g~~~~v~~~~~~~~~~~~~~~~~i~~~~~rI~ 353 (536) T protein:vir:10 285 AIVKMSMISSKVIGLVNPAGITQPRRL---------TKAQTGDFVT--GRPEDISFLQLEKQADFTVAKAVSDAIEARLS 353 (536) T ss_pred HHHHHHHHHhcCCcccCcccccchhhh---------ccCCCcceec--CCcccceeeeccccccchHHHHHHHHHHHHHH Confidence 5544 335555555553 333221100 0000111221 21222222222222233333444444444443 Q ss_pred HHhCCCccccccCCCccchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCC Q lcl|Aclame:pro 369 MELKLSVGTFSFDGRSMKTATEIVSENDLTYRTRNDHVYEVE-QFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDG 447 (517) Q Consensus 369 ~~~g~s~~~~~~~~~~~~TAtei~a~~~~~~~t~~~~~~~~~-~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~ 447 (517) ...=+. .+...+....|||||....+...+...-.-..+. ..|.-|+.-++.+..-.+.....+.+. +.+++--+ T Consensus 354 ~af~~~--~l~~~~~~r~TAtEV~~r~~E~~~~LG~v~~rl~~Ell~Pli~r~~~il~r~g~lP~~p~~~--v~~~~vs~ 429 (536) T protein:vir:10 354 FAFMLN--SAVQRTGERVTAEEIRYVASELEDTLGGVYSILSQELQLPLVRVLLKQLQATQQIPELPKEA--VEPTISTG 429 (536) T ss_pred HHHhhh--hcccCCCCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChhh--ccceEEec Confidence 322111 1222334457999999999988887665333332 334445555555443223222222222 34443222 Q ss_pred ccC-CHHHHHHHHHHHHh--cCC--------CCHHHHHH---hhCCC-------CHHHHHHHHHHHHHhcc-----c--- Q lcl|Aclame:pro 448 VFQ-DRSALLRFYGQAKT--FGF--------IPTVEAIQ---RIFKV-------PKKTAEQWLEEIRKDQI-----E--- 498 (517) Q Consensus 448 i~~-d~~~~~~~~~~~~~--~G~--------~S~~~~l~---~~~~~-------~eeea~~el~~i~~E~~-----~--- 498 (517) +.. .....++..++..+ +++ +....++. ...|+ |++|++++.++-.+.++ . T Consensus 430 l~~l~r~~~~~~l~~~~~~la~~~P~~ld~~id~d~~~~~~a~~~Gv~p~~~irt~eev~~~r~q~~~~~~~~~~a~~~~ 509 (536) T protein:vir:10 430 LEAIGRGQDLDKLERCVTAWAALAPMRDDPDINLAMIKLRIANAIGIDTSGILLTEEQKQQKMAQQSMQMGMDNGAAALA 509 (536) T ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhhhcccCCHHHHHHHHHHHcCCCchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 221 01112222221111 111 23333332 34565 34444443322111110 0 Q ss_pred --------cCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 499 --------LDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 499 --------~~~~~~~~~~~~~~~G~ee 517 (517) ..|....+ .....|=++ T Consensus 510 ~~~~~~~~~~~~~~~~--~~~~~g~~~ 534 (536) T protein:vir:10 510 QGMAAQATASPEAMAA--AADSVGLQP 534 (536) T ss_pred HHHHHHHhcCchhHHh--hhhccccCC Confidence 01111111 112223333 No 137 >protein:vir:3520 Length: 720 # NCBI annotation: P19 # Family: family:all:487 # MgeID: mge:72 # MgeName: APSE-1 # Cross-refs: genbank:acc:NP_050980;genbank:gi:9633566;genbank:GeneID:1262313 Probab=98.46 E-value=5.5e-07 Score=54.91 Aligned_cols=474 Identities=8% Similarity=-0.015 Sum_probs=220.7 Q ss_pred hHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhc--CCCccccccc---ccCccccccccccChHH Q lcl|Aclame:pro 3 VIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYE--GDYPQVEYIN---SQGKIQERDYMTLNLRK 77 (517) Q Consensus 3 ~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~--g~~~~~~~~~---~~~~~~~~~~~~ln~~~ 77 (517) |=+++++++.+....+..- +.-.++-+......++||. |+...-.-.. ..-....+...++|+-+ T Consensus 1 ma~~~~~~l~~~~~~~~~~----------~~~~~~~r~~~~~d~~f~~~~G~QW~~~~~~~~~~~l~~~~~P~~~~N~i~ 70 (720) T protein:vir:35 1 MAETLQKRHEQIMRKFDRA----------HSPQEAVREKCLEATRFARVPGGQWEGATAAGSELGKHFEKYPKFEINKIS 70 (720) T ss_pred CchHHHHHHHHHHHHHHHH----------HhhhHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHhhCCCCeEEEccHH Confidence 5566666666544332210 0112333444455666775 5432110010 00011234456779888 Q ss_pred HHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe---C---- Q lcl|Aclame:pro 78 LSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD---N---- 150 (517) Q Consensus 78 ~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d---~---- 150 (517) .++....+.--.-.+.+.|.-. ....+....+.++..+.-+.+.++.......+...+...|-||+++++| + T Consensus 71 ~~v~~v~g~~~~nr~d~~v~P~-~~~~d~~~Ae~l~~~~~~~~~~~~~~~~~s~Af~~~i~~G~G~~~v~~d~~~~~d~~ 149 (720) T protein:vir:35 71 TELNRIISEYRHNRITVKFRPG-DKTASEALANKLNGLFRADYEETDGGEACDNAFDDGSTGGFGCFRLTTNLVNALDPM 149 (720) T ss_pred HHHHHHHhHHHhCCCceEEEcC-CCcchHHHHHHHHHHHHHHHHhcCchHHHhHHHHHhhhccceeEEeeecccccCCCC Confidence 8888888887777788877422 1112234456677777778888888999999999999999999999875 1 Q ss_pred ---CeeEEEEE--cCCeEE--EEEEcCCceEEEEEEEEEEEE--------ec------------------CCcEEEEEEE Q lcl|Aclame:pro 151 ---GEIEFSWA--LANAFY--PLRSNSNGISEGVMKSVTTKV--------IG------------------NKTVYYTLLE 197 (517) Q Consensus 151 ---g~~~i~~v--~a~~~~--P~~~~~~~~~~~a~~~~~~~~--------~~------------------~~~~~yt~lE 197 (517) +.++|.-| |+..++ |.+...+ ...|-++...... ++ ......+..| T Consensus 150 ~~~~~i~i~~v~~~~~~v~~Dp~a~~~D-~sDar~~~~~~~~~~d~~~~~yp~~a~~~~~~~~~~~~~d~~~~~~v~i~E 228 (720) T protein:vir:35 150 DERQRICLEPIYDPARSVWFDPDAKKYD-KSDAEWAFCMYSLSAEKYKAEYNKDPATLMSGIERSWDYDWYDVDVVYIAK 228 (720) T ss_pred cccceeeEecccCchhheeecccccccC-hhhhhhhhhhcCCCHHHHHHhCCCccccccccccccccccccCCCceEEEE Confidence 13444432 333443 3211111 1111111111100 00 0011123445 Q ss_pred EEeecceeeccceEEEEEEEeecCCccccCcccccccc---------cC-CCC-------c--ce--E-EcCC------C Q lcl|Aclame:pro 198 FHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEEL---------YE-GMQ-------E--KT--Y-IQGL------S 249 (517) Q Consensus 198 ~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~---------~~-~l~-------~--~~--~-~~g~------~ 249 (517) ++..... .++..+|.+.. .|..+...+. .. +.. . .+ + +.|- . T Consensus 229 ~~~~~~~-------~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~v~~~~~~g~~~l~~~~ 298 (720) T protein:vir:35 229 YYEVKKE-------SVDVVSFQNPL---TSETVTYDSDQLELVEDELADIGFIEAARRTIKRRRVYVSVVDGEGFLEKAQ 298 (720) T ss_pred eeEEEEE-------EEEEEEeecCC---CCCeeecCCccHHHHHHHHhhhccccccccceeEEEEEEEeeccchhcccCC Confidence 4432210 01111222111 0111111100 00 000 0 00 0 1110 1 Q ss_pred cceEEEecC-Ccccc--ccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeecchHHhccCCCCcccccCccCC Q lcl|Aclame:pro 250 RPLFNYLKP-SGFNN--INPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRTVFVSDVMLRTVPDESGMPPPQVFD 326 (517) Q Consensus 250 ~p~f~~~~~-~~~N~--~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~l~~~~~~~~~~~~~~fd 326 (517) .+++.+||. |+--. ...++|...+.+.++++..+.+|...|.+.+.+-..+..+.. ...... .+ -...-...+ T Consensus 299 ~~p~~~fP~vP~~g~r~~~d~~~~~~G~vr~~kd~Q~~~N~~~s~~~~~~~~~~~~~~~--~a~~~~-~~-~~~~~a~~~ 374 (720) T protein:vir:35 299 RIPGEHIPLIPVYGKRWFIDDIERVEGHIAKAMDAQRLYNLQVSMLADSATQDTGSIPI--VGKSQI-KT-LEKYWANRN 374 (720) T ss_pred CCCCCccceEEEEeeeeccCCCcccceeeecchhHHHHHHHHHHHHHHHHHcCCccccc--cCcchH-HH-HHHHhhccc Confidence 112222221 11111 123566555678999999999999999999988554433322 111000 00 000000011 Q ss_pred cccceeeeecC--CCC------CCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHHHHHHHHH Q lcl|Aclame:pro 327 PDVNVYKSIRM--GTD------EEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVSENDLT 398 (517) Q Consensus 327 ~~~~~y~~~~~--~~~------~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a~~~~~ 398 (517) .+...|...+. +.+ ...+...++.--...++..++.-...|...+|++...+|..++ .++-.|.++.... T Consensus 375 ~~~~~~l~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~llq~~~~~i~~vsGi~~~~lG~~sn--~SG~Ai~~rq~qg 452 (720) T protein:vir:35 375 KNRPAFLPLNEIVDKQGNIIAPPTPVGYTQPQPLNQAMAALLQQTGADIQEVTGSSQAMQPMPSN--IAKETVNHLMHRS 452 (720) T ss_pred cccccccccccccccCcccccCCCcccccCCCCCchHHHHHHHHHHHHHHHHhCCChHHcCcccc--hHHHHHHHHHHHH Confidence 12222222221 111 1134445543334577888888888888899999999986543 3556666666666 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC------C-----------------------------CCCccceEEE Q lcl|Aclame:pro 399 YRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGG------E-----------------------------IPSAEHIGVD 443 (517) Q Consensus 399 ~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~------~-----------------------------~~~~~~v~i~ 443 (517) ..........++.+.+.+-+.+|.+... .++. . ..+.++|.|+ T Consensus 453 ~~~~~~~~Dnl~~~~~~~g~~lL~lI~~--~y~~er~~RI~~ed~~~~~v~~n~~~~d~~~g~~v~~NDi~~g~yDv~v~ 530 (720) T protein:vir:35 453 DMSSFIYLDNMAKSLKRAGEVWLSMARE--VYGSDRQVRIVNADGTDDIALMSVVINDNQTGQVVAMNDLSSGRYDVTVD 530 (720) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCCcEEEEecCCCCcceEeechhhhccCCCceeeeecceeeeeEEEEe Confidence 6666666777777777776666665432 1210 0 0112344554 Q ss_pred eCCCccCCHHHHHHHHHHHHhcCCCCHHH--------HHHhhCCCCHHHHHHHHHHHHHhccccCCCCCccccCCCCCCC Q lcl|Aclame:pro 444 FDDGVFQDRSALLRFYGQAKTFGFIPTVE--------AIQRIFKVPKKTAEQWLEEIRKDQIELDPVTISQRAQKRMFGD 515 (517) Q Consensus 444 f~d~i~~d~~~~~~~~~~~~~~G~~S~~~--------~l~~~~~~~eeea~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ 515 (517) =..+-..-.++.++.++++.. .|++.. .+.++-++.- +++.+++++............ .-+ T Consensus 531 ~~p~~~s~req~~~~m~qll~--~~~p~~~~~~~~~~~ile~~d~p~--~~e~~erirk~~~~~~~~~~~-------~~e 599 (720) T protein:vir:35 531 VGPSYTARRDATVSVLTNLLA--GMLPQDPMRQVLQGIILDNMEGEG--LDEFKEYNRKQLLTQGVVKPR-------NTE 599 (720) T ss_pred cccCcccHHHHHHHHHHHHHH--hcCCCchhHHHHHHHHHHhcCchh--HHHHHHHHHhhcchhcccCcc-------Chh Confidence 333333334555666666553 233221 1223334432 445556665544322211100 001 Q ss_pred CC Q lcl|Aclame:pro 516 EE 517 (517) Q Consensus 516 ee 517 (517) +| T Consensus 600 ~q 601 (720) T protein:vir:35 600 EE 601 (720) T ss_pred HH Confidence 11 No 138 >protein:vir:6322 Length: 510 # NCBI annotation: head-tail connector protein # Family: family:all:481 # MgeID: mge:132 # MgeName: phiKMV # Cross-refs: genbank:acc:NP_877469;genbank:gi:33300841;uniprot:Q7Y2D5;genbank:GeneID:1482611 Probab=98.46 E-value=5.8e-07 Score=54.78 Aligned_cols=458 Identities=11% Similarity=0.063 Sum_probs=179.4 Q ss_pred hHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccChHHHHHHH Q lcl|Aclame:pro 3 VIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLRKLSADV 82 (517) Q Consensus 3 ~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~~~i~~~ 82 (517) |=++++..+.+ + + . ..-..+|+.++.=.-|.+-.....+......+.-=..+...++. T Consensus 1 mk~~~~~~~~~----l-----k---R----------~~~e~~w~e~a~~tlP~~~~~~~~~~~~~~~~~~dstg~~a~~~ 58 (510) T protein:vir:63 1 MKTTAAMLWEK----L-----R---D----------GSVEQRAIEFAKTTLPYLMVDPMSGSRGVVEHDFQSAGALLVNN 58 (510) T ss_pred ChhHHHHHHHH----H-----h---c----------cchHHHHHHHHHhhccccCCCCCCccccccCCCccchHHHHHHH Confidence 33333333321 1 1 0 01235566665332222111111111111111212334455555 Q ss_pred HhhhhcCCc--ce-----eEecCcccccc---------cccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEE Q lcl|Aclame:pro 83 LSGLVFNEQ--CE-----VYVSDAKDEEK---------KDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRP 146 (517) Q Consensus 83 ~A~ll~~e~--~~-----i~~~~~~~~~~---------~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~ 146 (517) +|+-|.+-. |. +.+++....+. .+...+...+.+...+..++|...+.++..+..++|.+. . T Consensus 59 LAa~l~~~ltpp~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~Li~~G~a~--l 136 (510) T protein:vir:63 59 LAAKLARSLFPTGIPFFRSELTDAIRREADSRDTDITEVTAALARVDRKATQRLFQNASLAVLTQVIKLLIVTGNAL--L 136 (510) T ss_pred HHHHHHhhhcCCCCcccccCCChHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCeEE--E Confidence 554443321 11 33333211111 111122233456677888899999999999999999864 4 Q ss_pred EEeCCeeEEEEEcCCeEEEEEEcCCceEEEEEEEEEEEE-e--cCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCc Q lcl|Aclame:pro 147 YVDNGEIEFSWALANAFYPLRSNSNGISEGVMKSVTTKV-I--GNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNE 223 (517) Q Consensus 147 ~~d~g~~~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~-~--~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~ 223 (517) |.+.+..++..+|-.+++ +..|..+...++|....... . .+-.....+-..+ ...+....|-+.++...+. T Consensus 137 ~~~~~~~~~~~~pl~~y~-v~~d~~G~vd~i~rr~~~t~~~l~e~~~~~~~~~~~~-----~~~~~~v~v~~~V~~~~~~ 210 (510) T protein:vir:63 137 YRDSDAATVVAWSLRSYA-VRRDATGRWMDIVLKQRYKSKDLDEEYKQDLMRAGRN-----LSGSGSVDLYTHVQRKKGT 210 (510) T ss_pred EEcCCCcEEEEEEcceeE-EeeCCCcCeeEEEeeeeccHHHHhHHhhhhhhccccc-----cCCCcceEEEEEEEeecCC Confidence 567666677788888866 45666665555543221110 0 0000000000000 0000111122222321111 Q ss_pred cccCcccccccccCCCCcc--eEEc--CCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHH-HHHh Q lcl|Aclame:pro 224 GEIGKRIPLEELYEGMQEK--TYIQ--GLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWW-EIKM 298 (517) Q Consensus 224 ~~lG~~v~l~~~~~~l~~~--~~~~--g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~-e~~~ 298 (517) ..|...+|-..... .... ++...||+.+ -.+..+++.||+|--..+.+-++.|+..--.... .... T Consensus 211 -----~~~~~sv~~e~dg~~~~~~~~~~~~e~P~~~~----Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~a~~a 281 (510) T protein:vir:63 211 -----AMEYAELYHEIDGVRVGKEGRWPIHLCPYIVP----TWNLAPGEHYGRGHVEDYIGDFAKLSLLSEKLGLYELES 281 (510) T ss_pred -----CceEEEEEEEecCceeccccccccccCceeee----eeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHh Confidence 11111111100000 0001 1122234333 3555668899999999999999999866554444 3455 Q ss_pred ccceeecchHHhccCCCCcccccCccCCcccceeeeecCCCCCCcceEEe--cccChHHHHHHHHHHHHHHHHHhCCCcc Q lcl|Aclame:pro 299 GQRTVFVSDVMLRTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVT--HDIRTEQYKEAINQALRTLEMELKLSVG 376 (517) Q Consensus 299 ~~~~i~v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~--~dir~e~~~~~l~~~l~~i~~~~g~s~~ 376 (517) .++...|+++-+.. + ..........+ +.+..+ .+..++ +..+...-...++.+.+.|.... + - T Consensus 282 ~~~~~lv~p~g~~~-~-------~~~~~~~~g~~--v~g~~~--~v~~~~~~~~~d~~~~~~~i~~~~~rI~~af-~--~ 346 (510) T protein:vir:63 282 LEVLNLVDEAKGAV-V-------DDYQDAEMGDY--VPGGAE--AVRAYERGDYNKMAAIQQSLQAVVVRLNQAF-M--Y 346 (510) T ss_pred ccCCcccCcccccc-h-------hhhccCCCcee--ecCCcc--cceeeecCcccchHHHHHHHHHHHHHHHHHH-H--h Confidence 66665654422111 0 00001111111 112212 233333 22223333344444444333322 0 1 Q ss_pred ccccCCCccchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccc-eEEEeCCCccCCHHH Q lcl|Aclame:pro 377 TFSFDGRSMKTATEIVSENDLTYRTRNDH-VYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEH-IGVDFDDGVFQDRSA 454 (517) Q Consensus 377 ~~~~~~~~~~TAtei~a~~~~~~~t~~~~-~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~-v~i~f~d~i~~d~~~ 454 (517) ++.--.+...|||||....+...+...-. .+.-...|.-|++-++.++.-..+... +++... ..|++-..+-..-.. T Consensus 347 ~l~~~~~~rvTAtEV~~r~~E~~~~LGpv~~rl~~E~l~Pli~r~~~il~r~gl~p~-p~~~~~~~~v~~is~Laraq~~ 425 (510) T protein:vir:63 347 GANQRDAERVTAEEVRITAEEAENTLGGTYSLLAENLQSPLAYVCLSEVDDALLQGL-ITKQHKPAIETGLPALSRSAAV 425 (510) T ss_pred hcccCCCCCcCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-CchhcccceecchhHHHHHHHH Confidence 11111234469999999998888777652 233333444555555444432222211 111111 122222222211110 Q ss_pred -HHHHHHHHHh-cC-C------CCHHHHHH---hhCCC-------CHHHHHHHHHHHHHhcccc-----CCCCCccccCC Q lcl|Aclame:pro 455 -LLRFYGQAKT-FG-F------IPTVEAIQ---RIFKV-------PKKTAEQWLEEIRKDQIEL-----DPVTISQRAQK 510 (517) Q Consensus 455 -~~~~~~~~~~-~G-~------~S~~~~l~---~~~~~-------~eeea~~el~~i~~E~~~~-----~~~~~~~~~~~ 510 (517) .+....+.++ .| + +....++. +..|+ |+||.+++.++..++++.+ .-...-..... T Consensus 426 ~~l~~~~q~l~~~~~~aq~~~~id~d~~~~~~a~~~Gv~p~~ivrs~eev~a~~~~~~qq~~~~~~~~~~~~~~a~~~~~ 505 (510) T protein:vir:63 426 QSMLNASQVIAGLAPIAQLDPRISLPKMMDTIWAAFSVDTSQFYKSADELQAEAEQQRQQAAQAQAAQETLLEGASDMTN 505 (510) T ss_pred HHHHHHHHHHHHhcCchhhhccCCHHHHHHHHHHHhCCChhHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc Confidence 1111111111 11 1 22333333 34565 4556555543322111110 00000000011 Q ss_pred CCCCC Q lcl|Aclame:pro 511 RMFGD 515 (517) Q Consensus 511 ~~~G~ 515 (517) ...|= T Consensus 506 ~~~g~ 510 (510) T protein:vir:63 506 ALAGV 510 (510) T ss_pred cccCC Confidence 11122 No 139 >protein:vir:78942 Length: 510 # NCBI annotation: putative head-tail connector protein # Family: family:all:481 # MgeID: mge:1860 # MgeName: LKD16 # Cross-refs: genbank:acc:YP_001522822;genbank:gi:158345057;genbank:GeneID:5687432 Probab=98.43 E-value=6.7e-07 Score=54.43 Aligned_cols=449 Identities=12% Similarity=0.080 Sum_probs=175.7 Q ss_pred hHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccChHHHHHHH Q lcl|Aclame:pro 3 VIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLRKLSADV 82 (517) Q Consensus 3 ~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~~~i~~~ 82 (517) |=+++|..+.+ + + . + .-..+|+.++.=.-|.+-.....+......+.-=..+...++. T Consensus 1 mk~~~~~~~~~----l-----k---r------~----~~e~~w~e~a~~tlP~~~~~~~~~~~~~~~~~~dstg~~a~~~ 58 (510) T protein:vir:78 1 MKSTAAMLWEK----L-----R---D------G----SVEQRAIEFAKTTLPYLMVDPMSGSRGVVEHDFQSAGALLVNN 58 (510) T ss_pred ChhHHHHHHHH----H-----h---c------c----chHHHHHHHHHhhccccccCCCCcccccccCcccchHHHHHHH Confidence 22333333321 1 1 0 0 1235666665433232211111111111111111333455555 Q ss_pred HhhhhcCCc--c-----eeEecCcccccc---------cccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEE Q lcl|Aclame:pro 83 LSGLVFNEQ--C-----EVYVSDAKDEEK---------KDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRP 146 (517) Q Consensus 83 ~A~ll~~e~--~-----~i~~~~~~~~~~---------~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~ 146 (517) +|+-|.+-. | .+.+++....+. .+...+...+.+...+..++|...+.++..+..++|.+.+ T Consensus 59 LAa~l~~~ltpp~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l-- 136 (510) T protein:vir:78 59 LAAKLARSLFPTGIPFFRSELTDAIRREADSRDTDITEVTAALARVDRKATQRLFQNASLAVLTQVIKLLIVTGNALL-- 136 (510) T ss_pred HHHHHHHhhcCCCCcccccCCChHHhhhcccCcchHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCeEEE-- Confidence 554443321 1 133333221110 1111222334455668888999999999999999998655 Q ss_pred EEeCCeeEEEEEcCCeEEEEEEcCCceEEEEEEEEEEEE-------------ecCCcEEEEEEEEEeecceeeccceEEE Q lcl|Aclame:pro 147 YVDNGEIEFSWALANAFYPLRSNSNGISEGVMKSVTTKV-------------IGNKTVYYTLLEFHEWEKTEEGESLYVI 213 (517) Q Consensus 147 ~~d~g~~~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~-------------~~~~~~~yt~lE~h~~~~~~~~~~~y~I 213 (517) |.+.....+..+|-.+++ +..|..|...++|....... ...+.+.+..++ | T Consensus 137 ~~~~~~~~~~~~pl~~y~-v~~d~~G~vd~i~rr~~~t~~~l~~~~~~~~~~~~~~~~~~~~v~---------------v 200 (510) T protein:vir:78 137 YRNSDEATVVAWSLRSYA-VRRDATGRWMDIVLKQRYKSKDLDDVYKQDLMRAGRNLSGSGSVD---------------L 200 (510) T ss_pred EEeCCCCeEEEEEcceeE-EeeCCCcCeeEEEeeeeccHHHHHHHhhHHhhhhhhccCCCceEE---------------E Confidence 555444356777777765 45566665555543321110 000111112222 2 Q ss_pred EEEEeecCCccccCcccccccccCCCCcc--eEEcC--CCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHH Q lcl|Aclame:pro 214 TNELYKSDNEGEIGKRIPLEELYEGMQEK--TYIQG--LSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTY 289 (517) Q Consensus 214 ~n~ly~~~~~~~lG~~v~l~~~~~~l~~~--~~~~g--~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~ 289 (517) -+.++...+. ..|...+|...... ....+ ....||+.+ -.+..+++.||+|--..+.+-++.|+..- T Consensus 201 ~~~V~~~~~~-----~~~~~sv~~e~dg~~i~~~~~~~~~e~P~~~~----Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~ 271 (510) T protein:vir:78 201 YTHVQRRKGT-----AMDYAEMYHEIDGVRVGETGRWPIHLCPYIVP----TWNLAPGEHYGRGHVEDYIGDFAKLSLLS 271 (510) T ss_pred EEEEEeecCC-----CCcEEEEEEEecCeeeccccccccccCCeeee----eeeecCCCccccchHHHHHHHHHHHHHHH Confidence 2222221111 01111111000000 00111 122233333 35556688999999999999999998665 Q ss_pred HHHHH-HHHhccceeecchHHhccCCCCcccccCccCCcccceeeeecCCCCCCcceEEecc--cChHHHHHHHHHHHHH Q lcl|Aclame:pro 290 DQFWW-EIKMGQRTVFVSDVMLRTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHD--IRTEQYKEAINQALRT 366 (517) Q Consensus 290 s~~~~-e~~~~~~~i~v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~d--ir~e~~~~~l~~~l~~ 366 (517) -.... .....++...|+++-+. .+..........+. .+..+ .+..++.. -....-...++.+... T Consensus 272 ~~~l~~a~~a~~~~~lv~p~g~~--------~~~~l~~~~~g~~v--~g~~~--~v~~~~~~~~~d~~~~~~~i~~~~~r 339 (510) T protein:vir:78 272 EKLGLYELESLEVLNLVDEAKGA--------VVDDYQDAEMGDYV--PGGAE--AVRAYERGDYNKMAAIQQSLQAVVVR 339 (510) T ss_pred HHHHHHHHHhhcCCcccCCcccc--------chhhhccCCCceee--cCCcc--cccccccCcccchHHHHHHHHHHHHH Confidence 54444 33455555555432211 00000111111121 12112 23333311 1222223334433333 Q ss_pred HHHHhCCCccccccCCCccchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeC Q lcl|Aclame:pro 367 LEMELKLSVGTFSFDGRSMKTATEIVSENDLTYRTRNDH-VYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFD 445 (517) Q Consensus 367 i~~~~g~s~~~~~~~~~~~~TAtei~a~~~~~~~t~~~~-~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~ 445 (517) |....=+ ++.--.+...|||||....+...+...-. .+.-...|.-|++-++.++.-..+....+.....+.|++- T Consensus 340 I~~aF~~---~l~~~~~~rvTAtEV~~r~~E~~~~LGpv~~rl~~E~l~Pli~r~~~il~r~gl~p~p~~~~~~~~v~~i 416 (510) T protein:vir:78 340 LNQAFMY---GANQRDAERVTAEEVRITAEEAENTLGGTYSLLAENLQSPLAYVCLSEVDDALLQGLITKQHKPAIETGL 416 (510) T ss_pred HHHHHhh---ccccCCCCCcCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccccceeeecc Confidence 3222101 11111234469999999998888877652 3333334445555555444322222211111112233332 Q ss_pred CCccCCHH-HHHHHHHHHHh-cC----C---CCHHHH---HHhhCCC-------CHHHHHHHHHHH-HHhc-cccCCCC- Q lcl|Aclame:pro 446 DGVFQDRS-ALLRFYGQAKT-FG----F---IPTVEA---IQRIFKV-------PKKTAEQWLEEI-RKDQ-IELDPVT- 503 (517) Q Consensus 446 d~i~~d~~-~~~~~~~~~~~-~G----~---~S~~~~---l~~~~~~-------~eeea~~el~~i-~~E~-~~~~~~~- 503 (517) ..+-..-. +.+....+.++ .| + +....+ +.+..|+ |+||++++.++. ++++ +++.... T Consensus 417 s~Laraq~~~~l~~~~q~l~~~~~~~q~~~~id~d~~~~~~a~~~Gv~p~~ivrs~eev~a~~~~~~~q~~~~~~~~~a~ 496 (510) T protein:vir:78 417 PALSRSAAVQSMLNASQVIAGLAPIAQLDPRISLPKMMDTIWAAFSVDTSQFYKSADELQAEAEEQRRQAAQAQAAQETL 496 (510) T ss_pred cHHHHHHHHHHHHHHHHHHHHhcChhhhhhcCCHHHHHHHHHHHhCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 22222111 11111112221 11 1 223333 3345565 345554443322 1111 1000000 Q ss_pred Ccc--ccCCCCCCC Q lcl|Aclame:pro 504 ISQ--RAQKRMFGD 515 (517) Q Consensus 504 ~~~--~~~~~~~G~ 515 (517) .++ .......|= T Consensus 497 ~~~~~~~~~~~~g~ 510 (510) T protein:vir:78 497 LEGASDMTNALAGV 510 (510) T ss_pred HHhhhhhcccCCCC Confidence 000 001111111 No 140 >protein:vir:2198 Length: 536 # NCBI annotation: head-tail connector protein # Family: family:all:481 # MgeID: mge:49 # MgeName: T7 # Cross-refs: genbank:acc:NP_041995;swissprot:sw:p03728;genbank:gi:9627467;goa:P03728;uniprot:P03728;genbank:GeneID:1261033 Probab=98.43 E-value=7e-07 Score=54.32 Aligned_cols=464 Identities=9% Similarity=0.036 Sum_probs=185.8 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccChHHHHH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLRKLSA 80 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~~~i~ 80 (517) |.= ++. ++ ..++++..-+. +-.+-..-...|+.+|.=..|.+-.....+......+..=+.+...+ T Consensus 1 m~~-~~~-~~--------~~~~~~~r~~~----lk~~R~~~e~~w~e~~~~~lP~~~~~~~~~~~~~~~~~~dst~~~a~ 66 (536) T protein:vir:21 1 MAE-KRT-GL--------AEDGAKSVYER----LKNDRAPYETRAQNCAQYTIPSLFPKDSDNASTDYQTPWQAVGARGL 66 (536) T ss_pred Ccc-hhh-ch--------hHHHHHHHHHH----HHHHhhHHHHHHHHHHHHhcccccCCCCCcccccccccccccHHHHH Confidence 111 000 00 00011110000 00011112345555543322222111122222222233334555566 Q ss_pred HHHhhhhcCC--cce----eEecCccccccc---------ccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEE Q lcl|Aclame:pro 81 DVLSGLVFNE--QCE----VYVSDAKDEEKK---------DNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVR 145 (517) Q Consensus 81 ~~~A~ll~~e--~~~----i~~~~~~~~~~~---------~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k 145 (517) +.+|+-|++- |+. +.++++...+.. ....+...+.+...+..++|...+.++..+..++|.+.+. T Consensus 67 ~~Laa~l~~~ltP~~~WFrl~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~ly 146 (536) T protein:vir:21 67 NNLASKLMLALFPMQTWMRLTISEYEAKQLLSDPDGLAKVDEGLSMVERIIMNYIESNSYRVTLFEALKQLVVAGNVLLY 146 (536) T ss_pred HHHHHHHHHhhcCCCcccccccChhhhhccccchhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCcEeEE Confidence 6666544432 222 222222221111 1112334456667788899999999999999999988764 Q ss_pred EEEeC--CeeEEEEEcCCeEEEEEEcCCceEEEEEEEEEEEE-------------ecCCcEEEEEEEEEeecceeeccce Q lcl|Aclame:pro 146 PYVDN--GEIEFSWALANAFYPLRSNSNGISEGVMKSVTTKV-------------IGNKTVYYTLLEFHEWEKTEEGESL 210 (517) Q Consensus 146 ~~~d~--g~~~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~-------------~~~~~~~yt~lE~h~~~~~~~~~~~ 210 (517) .--+. +...+..+|-..++ +..|..+....+|....... ...+.+++..+++.+.-......+. T Consensus 147 ~~e~~~~~~~~f~~~pl~~~~-v~~d~~G~vd~i~r~~~~t~~~l~~~fg~~~~~~~~~~~~~~~v~v~~~v~~~~~~~~ 225 (536) T protein:vir:21 147 LPEPEGSNYNPMKLYRLSSYV-VQRDAFGNVLQMVTRDQIAFGALPEDIRKAVEGQGGEKKADETIDVYTHIYLDEDSGE 225 (536) T ss_pred EeeCCCCceeeEEEEEcCeEE-EeeCCCCCeeEEeeeeeccHHHHHHhhhhhhcccccccccccceeEEEEEEEecCCCc Confidence 32222 23346778888877 45566666655553221110 0111222222222221111111122 Q ss_pred EEEEEEEeecCCccccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHH Q lcl|Aclame:pro 211 YVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYD 290 (517) Q Consensus 211 y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s 290 (517) |.+ |..-+ |.+|..++- ..++...||+.+ -.+..+++.||+|--..+.+-++.|+..-- T Consensus 226 ~~~----~~e~~----g~~v~~~~g---------~~~f~~~P~i~~----Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~ 284 (536) T protein:vir:21 226 YLR----YEEVE----GMEVQGSDG---------TYPKEACPYIPI----RMVRLDGESYGRSYIEEYLGDLRSLENLQE 284 (536) T ss_pred EEE----EeccC----CeeeccccC---------ccccccCCeeee----eeeecCCCccccchHHHHHHHHHHHHHHHH Confidence 221 21100 222221110 011222234333 245566889999999999999999997655 Q ss_pred HHHH-HHHhccceeecc-hHHhccCCCCcccccCccCCcccceeeeecCCCCCCcceEEecccChHHHHHHHHHHHHHHH Q lcl|Aclame:pro 291 QFWW-EIKMGQRTVFVS-DVMLRTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLE 368 (517) Q Consensus 291 ~~~~-e~~~~~~~i~v~-~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~ 368 (517) .... .....++...|+ ..++....- -......|.+ +..++.++..++..-+...-...++.+.+.|. T Consensus 285 ~~l~~~~~a~~~~~lv~p~g~~~~~~~---------~~~~~g~~v~--g~~~~v~~~~~~~~~~~~~~~~~i~~~~~rI~ 353 (536) T protein:vir:21 285 AIVKMSMISSKVIGLVNPAGITQPRRL---------TKAQTGDFVT--GRPEDISFLQLEKQADFTVAKAVSDAIEARLS 353 (536) T ss_pred HHHHHHHHHhcCCcccCcccccchhhh---------ccCCCcceec--CCcccceeeeccccccchHHHHHHHHHHHHHH Confidence 5544 335555555553 333221100 0000111221 21222222222222233333444444444443 Q ss_pred HHhCCCccccccCCCccchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCC Q lcl|Aclame:pro 369 MELKLSVGTFSFDGRSMKTATEIVSENDLTYRTRNDHVYEVE-QFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDG 447 (517) Q Consensus 369 ~~~g~s~~~~~~~~~~~~TAtei~a~~~~~~~t~~~~~~~~~-~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~ 447 (517) ...=+. .+...+....|||||....+...+...-.-..+. ..|.-|+.-++.+..-.+.....+... +.+++--+ T Consensus 354 ~af~~~--~l~~~~~~r~TAtEV~~r~~E~~~~LG~v~~rl~~Ell~Pli~r~~~il~r~g~lP~~p~~~--v~~~~vs~ 429 (536) T protein:vir:21 354 FAFMLN--SAVQRTGERVTAEEIRYVASELEDTLGGVYSILSQELQLPLVRVLLKQLQATQQIPELPKEA--VEPTISTG 429 (536) T ss_pred HHHhhh--hcccCCCCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChhh--ccceEEec Confidence 322111 1222334457999999999988887665333332 334445555555443223222222222 34443222 Q ss_pred ccC-CHHHHHHHHHHHHh--cCC--------CCHHHHHH---hhCCC-------CHHHHHHHHHHHHHhcc-----c--- Q lcl|Aclame:pro 448 VFQ-DRSALLRFYGQAKT--FGF--------IPTVEAIQ---RIFKV-------PKKTAEQWLEEIRKDQI-----E--- 498 (517) Q Consensus 448 i~~-d~~~~~~~~~~~~~--~G~--------~S~~~~l~---~~~~~-------~eeea~~el~~i~~E~~-----~--- 498 (517) +.. .....++..++..+ +++ +....++. ..+|+ |++|++++.++-.+.++ . T Consensus 430 l~~l~r~~~~~~l~~~~~~la~~~Pe~ld~~id~d~~~~~~a~~~Gv~p~~~irt~eev~~~r~q~~~~~~~~~~a~~~~ 509 (536) T protein:vir:21 430 LEAIGRGQDLDKLERCVTAWAALAPMRDDPDINLAMIKLRIANAIGIDTSGILLTEEQKQQKMAQQSMQMGMDNGAAALA 509 (536) T ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhhhcccCCHHHHHHHHHHHcCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 221 11112222222111 111 23333332 34565 34444433322111110 0 Q ss_pred --------cCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 499 --------LDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 499 --------~~~~~~~~~~~~~~~G~ee 517 (517) ..|....+ .....|=++ T Consensus 510 ~~~~~~~~~~~~~~~~--~~~~~g~~~ 534 (536) T protein:vir:21 510 QGMAAQATASPEAMAA--AADSVGLQP 534 (536) T ss_pred HHHHHHHhcChhhHHh--hhhccccCC Confidence 01111111 112223333 No 141 >protein:vir:8418 Length: 409 # NCBI annotation: gp13 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:155 # MgeName: Omega # Cross-refs: genbank:acc:NP_818314;genbank:gi:29566750;genbank:GeneID:1260067 Probab=98.43 E-value=7.1e-07 Score=54.31 Aligned_cols=392 Identities=14% Similarity=0.102 Sum_probs=165.3 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccCh----H Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNL----R 76 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~----~ 76 (517) ||+|+++ |++-... ....... . ++. -...| .+.|.. +. ....+.+.. - T Consensus 1 Mgl~~~~---f~~~~~~---~~~~~~~---~--~~~----~~~~~--~~~g~~--v~---------~~~al~~~~v~~~v 52 (409) T protein:vir:84 1 MSLFTRI---FSGPSEE---RTLTKIS---G--IPS----PAEDW--AMHGDR--PG---------ANSAMTLGAFYACV 52 (409) T ss_pred Cchhhhh---hcCCCcc---ccccccc---c--ccc----ccchh--hccCcc--cc---------hhhhhccHHHHHHH Confidence 9999754 5432110 0100000 0 000 00111 111211 00 000111111 1 Q ss_pred HHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHH-HHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe--CCee Q lcl|Aclame:pro 77 KLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQH-VFQHNKFIKNLSDYLEPTFALGGLTVRPYVD--NGEI 153 (517) Q Consensus 77 ~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~-~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d--~g~~ 153 (517) +.||+..|++ +..+.-.+... ......+...|+. --....-..-++.++.+.+..|.+++.+.+. .|++ T Consensus 53 ~~ia~~iA~l----p~~~~~~~~~~----~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~l~l~Gn~~~~i~~~~~~g~~ 124 (409) T protein:vir:84 53 TLLADTVASL----SIDAYRKKDNV----RIPVSPAPKLLESTPYPGLTWFDWLWMLMESLAVTGNAFGYISARDEANRP 124 (409) T ss_pred HHHHHhhhhC----ceEEEEecCCc----ccccchHHHHhhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEEECCCCce Confidence 4556666654 22221111111 1111222222321 1011122233445566777788887766543 3443 Q ss_pred -EEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCccccc Q lcl|Aclame:pro 154 -EFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPL 232 (517) Q Consensus 154 -~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l 232 (517) .+..++|+.+.+....+. ...+|. ..|..+ |..++- T Consensus 125 ~~L~~l~p~~v~v~~~~~~-----------------~~~~~~---------------------~~~~~~-----g~~~~~ 161 (409) T protein:vir:84 125 TAIMPIHPDCIHVTDAKDE-----------------DGDWIE---------------------PVYRID-----GKVVPN 161 (409) T ss_pred EEEEEEcCceeEEEEcCCC-----------------cceEEE---------------------EEecCC-----ceEEch Confidence 466677766554211110 000000 001100 111111 Q ss_pred ccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHh-ccceeec--chHH Q lcl|Aclame:pro 233 EELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKM-GQRTVFV--SDVM 309 (517) Q Consensus 233 ~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~-~~~~i~v--~~~~ 309 (517) . + ++||+.+.++ +..+|+|.+.-+...++....+-....+-|+. +++..++ |..+ T Consensus 162 ~--------d----------vih~~~~~~~----~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l 219 (409) T protein:vir:84 162 H--------R----------IMHIKRYPVA----GCALGMSPIEKAASAIGLGLAAERYGLRWFRDSANPSGILSSDADL 219 (409) T ss_pred h--------h----------EEEecCCCCC----cccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEecCCCC Confidence 1 1 3455533222 23479999888887777765554444555654 4444443 1111 Q ss_pred hccCCCCcccccCccCCc-ccceeeeecCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchH Q lcl|Aclame:pro 310 LRTVPDESGMPPPQVFDP-DVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTA 388 (517) Q Consensus 310 l~~~~~~~~~~~~~~fd~-~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TA 388 (517) .+.+-......|.. .......+-. +++..++.++......++.+..+...++|+...|++|.-+|+...+..++ T Consensus 220 ----~~e~~~~~~~~~~~~~~n~g~~~vl-~~g~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~ 294 (409) T protein:vir:84 220 ----TPDQVKQTQKQWIQSHHNRRLPAVM-SAGIKWQSVSITPNESQFLETRSFQRSEIAMWFRIPPHMIGDVEKSTSWG 294 (409) T ss_pred ----CHHHHHHHHHHHHHHhccCCCeeec-CCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCccccc Confidence 00000000000100 0000000001 22233555555555667788888888899999999999998755444333 Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCC Q lcl|Aclame:pro 389 TEIVSENDLTY-RTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGF 467 (517) Q Consensus 389 tei~a~~~~~~-~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~ 467 (517) ..+.......+ .++.-+...++.+|... + .....|.++++.-+..|..+.++....++.+|+ T Consensus 295 sn~e~~~~~f~~~~l~P~~~~ie~~l~~~------------L-----~~g~~i~fd~~~l~~~d~~~~~~~~~~~~~~G~ 357 (409) T protein:vir:84 295 TGIEEQGINFVRHTLLPWLRCIEQALDTF------------L-----PRGQFVKFNVDGLMRGDVTARFTAYQMGLQNGI 357 (409) T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHh------------c-----cCCCeEEEechhhhccCHHHHHHHHHHHHhCCC Confidence 32322221221 22333333333333322 1 123457778877777899999999999999999 Q ss_pred CCHHHHHHhhCCCCHH-HHHHHHHHH---HHhccccCCCCCccccCCCCCCCC Q lcl|Aclame:pro 468 IPTVEAIQRIFKVPKK-TAEQWLEEI---RKDQIELDPVTISQRAQKRMFGDE 516 (517) Q Consensus 468 ~S~~~~l~~~~~~~ee-ea~~el~~i---~~E~~~~~~~~~~~~~~~~~~G~e 516 (517) |+.-++++.. |+..- ..++-+... ..++.....+..+..+.....|.+ T Consensus 358 ~t~NE~R~~~-g~~p~~ggD~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~gn~ 409 (409) T protein:vir:84 358 WSVNEVRAWE-DAPPIPEGDIHLQPMNFVPLGYVPPEEPAQEPQPNSATEGNK 409 (409) T ss_pred cCHHHHHHHh-CCCCCCCcceeeecccccccccCCccccCcCCCCCCccCCCC Confidence 9999976543 55431 122111110 011111111111112222223333 No 142 >protein:vir:103177 Length: 533 # NCBI annotation: gp131 # Family: family:all:1036 # MgeID: mge:1583 # MgeName: Syn9 # Cross-refs: genbank:acc:YP_717798;genbank:gi:113200635;genbank:GeneID:4239186 Probab=98.41 E-value=6.8e-07 Score=54.40 Aligned_cols=441 Identities=13% Similarity=0.128 Sum_probs=198.8 Q ss_pred HHHhhcccchhhhcccc---CcCCHHHHHHHHHHHHHhcCCCcccccccccCcccc-----cccccc-ChH---HHHHHH Q lcl|Aclame:pro 15 GYALSGQTLKSINDHEK---INIDPNELARIERNLRQYEGDYPQVEYINSQGKIQE-----RDYMTL-NLR---KLSADV 82 (517) Q Consensus 15 ~~~~~~~~~~~~~~~~~---i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~-----~~~~~l-n~~---~~i~~~ 82 (517) ++.++...|+...+.++ .+.+..+-.....-..-|-|. +...++..+. +...++ .-| ..|-.- T Consensus 1 m~~lfg~~i~~~~~~~~~~s~~~~~~~dg~~~i~~~~~~~~-----~~~~e~~~~~~~eLI~~YR~ma~~pEvd~Av~eI 75 (533) T protein:vir:10 1 MSQLFGFSLERAKKAPKGPSFVQKDNLDGSQPVSGGGYYGY-----TVDFDGQVRNEYQLISRYREMVLQPECDSAVDDI 75 (533) T ss_pred CccccccccccccccccCCCCCCCCcccccceeecccccce-----eeecccccchHHHHHHHHHHHhhccchhhHHHHh Confidence 33333334444333222 122222211111100111111 1111111111 111111 111 111111 Q ss_pred Hhhhhc----CCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeCC-----ee Q lcl|Aclame:pro 83 LSGLVF----NEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDNG-----EI 153 (517) Q Consensus 83 ~A~ll~----~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~g-----~~ 153 (517) .-+.++ .+++++.+++-. ..+...++-.+..+.++.--+|.++..+....+.+.|..+||..+|.. =. T Consensus 76 Vneaiv~d~~~~pV~i~Ld~~~---~s~~iK~kI~eEF~~Il~ll~F~~~~~e~fR~WYVDgRi~fHkiid~~~pk~GI~ 152 (533) T protein:vir:10 76 VNETICGNFDDVPVSVELSNLK---VSDKIKKLIREEFGEILRLLDFENRSYEIFRRWYVDGRLFYHKVIDPDNPQGGLI 152 (533) T ss_pred hcceeeecCCCceEEEEecccc---cchHHHHHHHHHHHHHHHHhccchhhhHHHhhhhhcceEEEEEEecCCCccccce Confidence 111111 123444444322 122233445566777887778999999999999999999999999843 34 Q ss_pred EEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCC---ccccCccc Q lcl|Aclame:pro 154 EFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDN---EGEIGKRI 230 (517) Q Consensus 154 ~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~---~~~lG~~v 230 (517) .+..++|.++-|+..--... ..+..+..+......+ ..++-+|.... ...-|..+ T Consensus 153 ELr~lDPr~i~~vr~i~~~~--------------~~~~~~~~~~~~v~~~--------~~eyf~Ynp~g~~~~~~~~vkI 210 (533) T protein:vir:10 153 ELRYIDPRKIRKINETEQKR--------------PEQLRGLPLNQQLSPK--------SAEYFLYDPKGLKNSTTQGLKI 210 (533) T ss_pred eeeeccccceeeeeeeeccC--------------CCccceeecchhhhcc--------ceeeeeeccccccccCCCceec Confidence 57889999888763210000 0000000000000000 01112232110 00112222 Q ss_pred ccccccCCCCcceEE-cCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHH---Hhccceeec- Q lcl|Aclame:pro 231 PLEELYEGMQEKTYI-QGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEI---KMGQRTVFV- 305 (517) Q Consensus 231 ~l~~~~~~l~~~~~~-~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~---~~~~~~i~v- 305 (517) |-+.+ ++. .|+ .+.....-+|-+..|.-.+-.| +..-..+-.+ |.-.+|||- T Consensus 211 ~~dAI-------~y~hSGl---------------~d~~~~~i~syLhkAiKp~NQL-km~EDAlVIYRitRAPeRRvFYI 267 (533) T protein:vir:10 211 APDSI-------CYVHSGI---------------MDLNKNMTLSHLHKAIKAVNQL-RMIEDSLVIYRLSRAPERRIFYI 267 (533) T ss_pred chhhe-------eeeeccc---------------eeCCCCceeccchHhHHHHHhh-HHHHhhHHHHhhhccccceEEEE Confidence 21111 011 111 1222222345555555444444 3333333334 455567763 Q ss_pred c---------hHHhcc---------CCCCcccccCccCCcccceeeeecCC------CCCCc--ceEEecccChHHHHHH Q lcl|Aclame:pro 306 S---------DVMLRT---------VPDESGMPPPQVFDPDVNVYKSIRMG------TDEEF--VKDVTHDIRTEQYKEA 359 (517) Q Consensus 306 ~---------~~~l~~---------~~~~~~~~~~~~fd~~~~~y~~~~~~------~~~~~--v~~~~~dir~e~~~~~ 359 (517) + +.+|+. .-+...+. -.+++.++++.-+ +++.+ |+++..- .--.-.+- T Consensus 268 DVGnLPk~KAeqYlr~iM~k~KNklVYDa~TGe-----v~ddrk~msMlEDyWLPRReGgrgTEItTLpGg-qnLgem~D 341 (533) T protein:vir:10 268 DVGNLPKNKAEQYLREVMGRYRNKLVYDANTGE-----IKDDKKFMSMLEDFWLPRREGGRGTEITTLPGG-QNLGELED 341 (533) T ss_pred ecCCCCchhHHHHHHHHHHhccceEEEeccCce-----ecccchhhhhHhhhcccccCCCCccceeecccc-CCcChHHH Confidence 1 111111 00111111 1244445543211 33333 4444322 21123344 Q ss_pred HHHHHHHHHHHhCCCccccccCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCc- Q lcl|Aclame:pro 360 INQALRTLEMELKLSVGTFSFDGR-SMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSA- 437 (517) Q Consensus 360 l~~~l~~i~~~~g~s~~~~~~~~~-~~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~- 437 (517) ++-+.+.+....+.+.+-+..+++ ..+-++||.-..-....-+.+++..|..-+.++++.=|-|- +.+....+.. T Consensus 342 V~YF~kKLY~aLnVP~SRl~~e~~f~~Gr~~EItRDEiKF~KFI~RLR~rFs~lF~~~Lk~qLiLK---giit~eeW~~i 418 (533) T protein:vir:10 342 VKYFQKKLYKSLNVPGSRLETETTFNVGRAAEITRDEVKFQKFVARLRKRFSELFTDLLKTQLVLK---GVISIEEWDQM 418 (533) T ss_pred HHHHHHHHHHHhCCCccccCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc---cCCCHHHHHHH Confidence 555666777777887777765543 23345677666666666777888888888888877765432 2222222322 Q ss_pred -cceEEEeCCCccCCHHHHHHHHHHHH---------hcCCCCHHHHHHhhCCCCHHHHHHHHHHHHHhccc---cCC--- Q lcl|Aclame:pro 438 -EHIGVDFDDGVFQDRSALLRFYGQAK---------TFGFIPTVEAIQRIFKVPKKTAEQWLEEIRKDQIE---LDP--- 501 (517) Q Consensus 438 -~~v~i~f~d~i~~d~~~~~~~~~~~~---------~~G~~S~~~~l~~~~~~~eeea~~el~~i~~E~~~---~~~--- 501 (517) ..|.++|...---.+..+++.+.+-. -+-..|.+...++...+||+|.+++.+.|++|... .+| T Consensus 419 ~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~S~dyi~k~ILr~tDeei~~~~kqI~~E~k~~~~~~p~~~ 498 (533) T protein:vir:10 419 KEHIQYDYIADNYFAELKEIEIRNERMNQVATMDPFVGKYFSVEYMRRQVLKQTDVEMKEIDKQIESEMESGIIADPAAE 498 (533) T ss_pred hhcceEeeeecchHHHHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHhccCHHHHHHHHHHHHHHHhCCCCCCCcch Confidence 45777776554444444444332211 11246888877788899999999999999987643 122 Q ss_pred ---CCCccccCCCCCCCCC Q lcl|Aclame:pro 502 ---VTISQRAQKRMFGDEE 517 (517) Q Consensus 502 ---~~~~~~~~~~~~G~ee 517 (517) ......|..+..+.|| T Consensus 499 ~~~~~~~~~~~~~~~~~~~ 517 (533) T protein:vir:10 499 MDPAMAAGDPDAGGAPAEE 517 (533) T ss_pred hhHHhcCCCCCcCCccccc Confidence 1122233344444444 No 143 >protein:vir:6382 Length: 553 # NCBI annotation: portal protein Lambda B # Family: family:all:47 # MgeID: mge:133 # MgeName: BcepNazgul # Cross-refs: genbank:acc:NP_918995;genbank:gi:34610170;genbank:GeneID:2559575 Probab=98.39 E-value=8.9e-07 Score=53.77 Aligned_cols=451 Identities=10% Similarity=-0.025 Sum_probs=202.6 Q ss_pred CchHHHHHHHHHHHHHHhh----cccchhh--hcc-----ccCcCCHH------HHHHHHHHHHHhcCCCcccccccccC Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALS----GQTLKSI--NDH-----EKINIDPN------ELARIERNLRQYEGDYPQVEYINSQG 63 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~----~~~~~~~--~~~-----~~i~~~~~------~~~~i~~~~~~Y~g~~~~~~~~~~~~ 63 (517) |.-..+.-..+..+..... .....-. ++. .-...|+. -..-..+-+.+++|+ T Consensus 2 ~~~~~r~~~~~a~~~~~~~~~~~~~~y~gA~~~~r~~~~w~~~~~s~~~~~~~~~~~lr~RaRdL~rNn----------- 70 (553) T protein:vir:63 2 TKVTVRKLSEVTSGRPEQSASLGGGGLEGASRLSRETVSWNPSLRSPDALINPLKRIADARGRDMADND----------- 70 (553) T ss_pred cchhhhhhcccccccchhhhhhhcccccccccCCCcccccccCCCChHHHHHHHHHHHHHHHHHHHhcC----------- Confidence 3322222221111110000 0000000 000 00011111 111112344455554 Q ss_pred ccccccccccChHHHHHHHHhhhhcCCcceeEecCc-c-------cccccccchhHHHHHHHHHH----------hhhhH Q lcl|Aclame:pro 64 KIQERDYMTLNLRKLSADVLSGLVFNEQCEVYVSDA-K-------DEEKKDNSFKTAHEFIQHVF----------QHNKF 125 (517) Q Consensus 64 ~~~~~~~~~ln~~~~i~~~~A~ll~~e~~~i~~~~~-~-------~~~~~~~~~~~~~~~l~~~l----------~~n~f 125 (517) ++++.+.+.+.+.+++.- |++.-. + +.+......+.....++... ...+| T Consensus 71 ----------~~a~~av~~~~~nvVG~G--i~~~~~~~~~~l~g~~~~~~~~~~~~ie~~w~~wa~~~~~~~D~~g~~~f 138 (553) T protein:vir:63 71 ----------GFTNGAVGYQRDSIVGAQ--YRLNSMPDINVIPGATEEWAEEYQTIVEAKFELYAESLACYIDNAAISTF 138 (553) T ss_pred ----------hHHHHHHHHHHHhhccCC--ceeeeccchhhhcCCCHHHHHHHHHHHHHHHHHhcCCccceeeccccCCH Confidence 577888899999999863 433210 0 11111111222222233222 12257 Q ss_pred HHHHHHHHHHHHhhCCEEEEEEEeC--C---eeEEEEEcCCeEE-EE-EEcCCceEEEEEEEEEEEEecCC-cEEEEEEE Q lcl|Aclame:pro 126 IKNLSDYLEPTFALGGLTVRPYVDN--G---EIEFSWALANAFY-PL-RSNSNGISEGVMKSVTTKVIGNK-TVYYTLLE 197 (517) Q Consensus 126 ~~~~~~~~~~a~~~G~~~~k~~~d~--g---~~~i~~v~a~~~~-P~-~~~~~~~~~~a~~~~~~~~~~~~-~~~yt~lE 197 (517) ......++...+..|.+++++.+.. | .+++..++||.+- |. ..+.+.+..+|-+ +..+ ..-|. T Consensus 139 ~~~q~l~~r~~~~dGE~~~~~~~~~~~~~~~~~~lq~ie~drl~~~~~~~~~~~i~~GVE~------d~~Gr~vaY~--- 209 (553) T protein:vir:63 139 TGLIRLGVVGYVKTGEVLATAEWDRAANRPYATCFQMVSTDRLSNPYQQLDTPTLRRGVQY------DKRGRPQGYW--- 209 (553) T ss_pred HHHHHHHHHHHHhCCceEEEeeeccCCCCcccceEEEechhhcCCCCCCCCCCeeEeeeEE------CCCCceEEEE--- Confidence 7777778888899999999988863 2 3688999998863 21 1122334444311 1111 11122 Q ss_pred EEeecceeeccceEEEEEEEeecCCccccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhh Q lcl|Aclame:pro 198 FHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDN 277 (517) Q Consensus 198 ~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~ 277 (517) +|+..-.+..+. ......|..++. ...++++-++|+.- ...++...|+|.|+. T Consensus 210 -------------------i~~~hPgd~~~~-~~~~~~~~r~~~---~~~v~a~~vlH~f~----~~r~gQ~RGis~lap 262 (553) T protein:vir:63 210 -------------------IQVAHPGDLYQM-APDMYKWKFVQQ---SKPWGRRQVIHILE----PREPDQSRGIADIVS 262 (553) T ss_pred -------------------eeccCCCccccc-cccccceeeecc---ccccChhHheeccc----ccCCCcccCCchHHH Confidence 222211111100 000001111111 12234444554432 234567789999999 Q ss_pred hHHHHHHHHHHHHHHHHHH-Hhccceeecch-----HHhccCCCCccc-ccCccCC---cccc-e--------eeeecC- Q lcl|Aclame:pro 278 SVSTLKKINDTYDQFWWEI-KMGQRTVFVSD-----VMLRTVPDESGM-PPPQVFD---PDVN-V--------YKSIRM- 337 (517) Q Consensus 278 ~~~lid~lD~~~s~~~~e~-~~~~~~i~v~~-----~~l~~~~~~~~~-~~~~~fd---~~~~-~--------y~~~~~- 337 (517) ++..+..||.-.+.-..-- -.+--..||-. ........+.+. .....+. .... . +.+... T Consensus 263 vl~~l~~l~~y~daeL~~a~i~A~~a~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pG~i~ 342 (553) T protein:vir:63 263 GLKDMRMAKRFKEMSLQNAVINASYAAAIESELPPEFIHSQMSGGSPNADMVGIFGKYMDALKAYVGGANNIQIDGAKIP 342 (553) T ss_pred HHHHHHHHhHHHHHHHHHHHHhhhheeeeecCCChhhhhhhcccccccccccccccccccccccccccccceeecCceee Confidence 9999999986555433322 23333334411 111110000000 0000000 0000 0 000000 Q ss_pred -CCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 338 -GTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSM--KTATEIVSENDLTYRTRNDHVYEVEQFIK 414 (517) Q Consensus 338 -~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~--~TAtei~a~~~~~~~t~~~~~~~~~~al~ 414 (517) =..+..++.++|.-+..++..-...+++.|....|+++..++-|-+++ .++-.......+++.. .|..|...+- T Consensus 343 ~L~pGe~i~~~~p~~p~~~~~~F~~~~lr~iaaglGi~Ye~lt~D~s~~nYSS~R~~~~e~~r~~~~---~q~~~~~~~~ 419 (553) T protein:vir:63 343 HLFPGTKLNLKPMGTPGGVGSEFEASLNRHLASAFGMSYEEFTRDFSKANYSSIQAGIAMTRRFLEG---RKKMCADRLA 419 (553) T ss_pred ecCCCCeeeecCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhhhcccccHHHHHHHHHHHHHHHHH---HHHHHHHHHH Confidence 023456888888888888888888999999999999999988664332 2333443344444433 3333333333 Q ss_pred H-HHHHHHHHHhhhhccCCCCCCc----------------cceEEEeCCCccCCHHHHHHHHHHHHhcCCCCHHHHHHhh Q lcl|Aclame:pro 415 G-LVISVLELAKTYKLFGGEIPSA----------------EHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTVEAIQRI 477 (517) Q Consensus 415 ~-li~~il~~~~~~~~~~~~~~~~----------------~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~~~l~~~ 477 (517) + +.+..|..+- +.+....+. ..+.....--..+|+.++++.....+.+|+.|.++.+++. T Consensus 420 ~pi~~~wl~~a~---l~G~i~~p~~~~~~~~~~p~~~~a~~~~~w~~p~~~~iDP~Ke~~A~~~~i~~G~~t~~~~~a~~ 496 (553) T protein:vir:63 420 TEFFTLWLEEAI---AAGEVPMPPGQTRDLFYQPLMKEALSKCEWIGASQGQIDQLKETQAAVMRIDAGLSTYEREIARL 496 (553) T ss_pred HHHHHHHHHHHH---HcCCccCCCcccchhhcchhhhhhhhceeeecCCccccChHHHHHHHHHHHHcCCCCHHHHHHHh Confidence 3 3333333221 111111111 1123333333456999999999999999999999988877 Q ss_pred CCCCHHHHHHH----HHHHHHhccc--cCCCC----------CccccCCCCCCCCC Q lcl|Aclame:pro 478 FKVPKKTAEQW----LEEIRKDQIE--LDPVT----------ISQRAQKRMFGDEE 517 (517) Q Consensus 478 ~~~~eeea~~e----l~~i~~E~~~--~~~~~----------~~~~~~~~~~G~ee 517 (517) |.+-++..++ .+++++-... .++.. .++.......++|+ T Consensus 497 -G~D~~~v~~q~a~e~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (553) T protein:vir:63 497 -GGDFRKSFAQRAREDALLKKYGLTFNLSAKRSLGDGRDAATGIAEDPAAAQTSQQ 551 (553) T ss_pred -CCCHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCcccCCCCCCCCCCCCcccc Confidence 7655544333 3333332111 11110 01111111122222 No 144 >protein:vir:97060 Length: 432 # NCBI annotation: putative head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1653 # MgeName: OP1 # Cross-refs: genbank:acc:YP_453563;genbank:gi:84662598;genbank:GeneID:5142475 Probab=98.37 E-value=1e-06 Score=53.48 Aligned_cols=401 Identities=11% Similarity=0.063 Sum_probs=165.7 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccc-cccccC----h Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQER-DYMTLN----L 75 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~-~~~~ln----~ 75 (517) ||+|.++|.+|..-... . +..... .++. . ..++.++..- .+ .|..... ..+... - T Consensus 7 ~g~~~~~~~~~~~~~~~-~------~~~~~~--~~~~--~--~~~~~~~~~~-~~------~g~~v~~~~a~~~~aV~~~ 66 (432) T protein:vir:97 7 LGLLGQLKAMFVPPDPV-D------IGGGQT--FTPV--N--ATARDLGIII-SD------TGAAVNADAIMRLDAVAAC 66 (432) T ss_pred CchhhhhHhhcCCcccc-c------cccccc--cccC--c--hhhhhhcccc-cc------cCcccchHhhhcchHHHHH Confidence 99999999999642221 1 111000 0110 0 0111111110 00 0100000 011111 1 Q ss_pred HHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHH-HHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeCCee- Q lcl|Aclame:pro 76 RKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQH-VFQHNKFIKNLSDYLEPTFALGGLTVRPYVDNGEI- 153 (517) Q Consensus 76 ~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~-~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~g~~- 153 (517) -..||+..|++ |..+--.+.+.. .......+...|+. --....-..-++.++.+.+..|.+++.+..++|++ T Consensus 67 v~~Ia~~ia~l----p~~~y~~~~~g~--~~~~~~pl~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~~~~~~g~~~ 140 (432) T protein:vir:97 67 VKLVSQAVAAM----PLMMYMRTPDGR--KEAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYVRKVVTDGRIE 140 (432) T ss_pred HHHHHHhhccC----ceEEEEecCCCc--ccccccHHHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEEEEEecCCcEE Confidence 14566666654 333322111110 01111222233321 00001112233345556777899988888877764 Q ss_pred EEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccc Q lcl|Aclame:pro 154 EFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLE 233 (517) Q Consensus 154 ~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~ 233 (517) .+..++|+.+-|+...+++ ..|+... . .| ..+. T Consensus 141 ~L~~l~p~~v~v~~~~~g~------------------~~y~~~~---~------~g------------------~~~~-- 173 (432) T protein:vir:97 141 SLQYLANDRLTITTDTKGN------------------TAYRYRR---T------DG------------------QMID-- 173 (432) T ss_pred EEEEEcCcceEEEEcCCCc------------------EEEEEEe---c------Cc------------------eEEE-- Confidence 4566778777664222211 1111000 0 00 0000 Q ss_pred cccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhc-cceeecchHHhcc Q lcl|Aclame:pro 234 ELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMG-QRTVFVSDVMLRT 312 (517) Q Consensus 234 ~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~-~~~i~v~~~~l~~ 312 (517) ++ +++ +.|++.+.. +..+|+|-+.-+...+......-.-..+-|+.| ++..++ +. T Consensus 174 -~~---~~~----------iih~r~~~~-----dg~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng~~~~gil-----~~ 229 (432) T protein:vir:97 174 -IP---RQQ----------IWKIMGYSL-----DGENGLSAIRYGAQIFGTAIAAEAQAARAFRNGQLQSVYY-----QI 229 (432) T ss_pred -Ec---ccc----------EEEecCcCC-----CCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceeE-----ec Confidence 00 000 334543211 224688888877766654433322223344544 333222 21 Q ss_pred CCCCcccccCccCCcccceeeeecC------CCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCcc- Q lcl|Aclame:pro 313 VPDESGMPPPQVFDPDVNVYKSIRM------GTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSM- 385 (517) Q Consensus 313 ~~~~~~~~~~~~fd~~~~~y~~~~~------~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~- 385 (517) ...-.... .+.-...|..... =+++-.++.++......+..+..+...++|+...|++|..+|....+. T Consensus 230 ~~~l~~e~----~~~~~~~~~~~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~ 305 (432) T protein:vir:97 230 DRFLTDDQ----YDSFSKKVSGSVEAGRAPLLEGGMDVKSLGLNPVDAQLLQSRQYSVESICRFFGVPPSMIGHSSAGTT 305 (432) T ss_pred CCCCCHHH----HHHHHHHHhhhhcCCCceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCcCCccc Confidence 11111000 0000011111100 022334555665556677788888888899999999999998765432 Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhc Q lcl|Aclame:pro 386 KTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTF 465 (517) Q Consensus 386 ~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~ 465 (517) .+++.+....... ++.+|.-++..|....+. .++.......+.+.++++.-+..|..+.++...+++.+ T Consensus 306 ~~~s~~e~~~~~f----------~~~tl~P~~~~ie~~ln~-kLl~~~e~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~ 374 (432) T protein:vir:97 306 SWGSGIESQQLGF----------LTMTLSPWLRRIEQSIAL-NLLTPAERRRYFADFDTSALLRADSAARSSYYSQLVNN 374 (432) T ss_pred ccchhHHHHHHHH----------HHHHHHHHHHHHHHHHhh-hccCccccCceEEEeechhhhccCHHHHHHHHHHHHhC Confidence 2223232222222 222333333332221111 12222212234455666555668899999999999999 Q ss_pred CCCCHHHHHHhhCCCCHHH-HHHHH---------HHHHHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 466 GFIPTVEAIQRIFKVPKKT-AEQWL---------EEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 466 G~~S~~~~l~~~~~~~eee-a~~el---------~~i~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) |+|+.-+++... |+..-+ -...+ ..+ .++.+.+|.......+.. -..+ T Consensus 375 G~~T~NE~R~~~-glpp~~g~~~~~~~~~~~~pl~~~-~~~~~~~~~~~~~~~~~~--~~~~ 432 (432) T protein:vir:97 375 GLMTRDEAREIE-GLPKLGGNAAVLTVQSAMVPLDSI-GLQASPEPASGLGNQQQD--KVSK 432 (432) T ss_pred CCCCHHHHHHHh-CCCCCCCCcceEeecccccchhhh-cccCCCCCCCCCCCcccc--cccC Confidence 999999976543 543211 00001 111 111111111111000000 0000 No 145 >protein:vir:1380 Length: 422 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612832;genbank:gi:20065966;genbank:GeneID:935782 Probab=98.36 E-value=1.1e-06 Score=53.30 Aligned_cols=403 Identities=14% Similarity=0.087 Sum_probs=168.2 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccChH---- Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLR---- 76 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~---- 76 (517) ||+|+++ |.+.... ............++... .....++-.. ..... . ....+..+.- T Consensus 1 MG~f~~l---f~~~~~~----~~~~~~~~~~~~~~~~~----~~~~~~~g~~-~~~~v---~----~~~al~~~~v~~ci 61 (422) T protein:vir:13 1 MGFLRGL---FNKKNNN----DEKRSNYDEDIGIDISD----SNFWEKFGIK-LNFSV---R----GKRALKENTVYVCT 61 (422) T ss_pred Cchhhhh---hhccCCc----cchhhhhhhccccccCc----chhhhhcccc-CCccc---c----hhhhhccHHHHHHH Confidence 9999644 5432211 00000100111111000 0111112111 11110 0 0011111111 Q ss_pred HHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHH-HHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeC-Ce-e Q lcl|Aclame:pro 77 KLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQH-VFQHNKFIKNLSDYLEPTFALGGLTVRPYVDN-GE-I 153 (517) Q Consensus 77 ~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~-~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~-g~-~ 153 (517) ..||+..|++ |..+.=.... .....+...|+. --.......-++.++.+.+..|.+++.+..+. |+ . T Consensus 62 ~~ia~~iA~l----p~~~~~~~~~------~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~ 131 (422) T protein:vir:13 62 KIRAESIGKL----SLKIYKDKEE------YKEHELYYLLRYKPNPLMSSINFWKCLETQRTLKGNAYAYIERDRKGKII 131 (422) T ss_pred HHHHHhhhhC----ceEEEecCcc------cccchHHHHHhhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEE Confidence 4555555553 3332111111 111123333321 00011122334456667778898888887763 55 3 Q ss_pred EEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccc Q lcl|Aclame:pro 154 EFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLE 233 (517) Q Consensus 154 ~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~ 233 (517) .+..++|+++-++. +.++.... .+..+|. + ...+ |....+ T Consensus 132 ~L~~i~~~~v~~~~-~~~~~~~~-----------~~~~~y~------------------~-----~~~~----g~~~~~- 171 (422) T protein:vir:13 132 GLYPINSDNVTKII-DDDNFLSS-----------LSKVWYV------------------V-----TDKN----GKEHKL- 171 (422) T ss_pred EEEEECCcceEEEE-cCCcceec-----------cceEEEE------------------E-----EeCC----CeEEEE- Confidence 57778888887753 33222110 0111111 0 0000 111100 Q ss_pred cccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhc-cceeec--chHHh Q lcl|Aclame:pro 234 ELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMG-QRTVFV--SDVML 310 (517) Q Consensus 234 ~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~-~~~i~v--~~~~l 310 (517) + +. -++|++.+. ..+..+|+|.+.-+...|.....+-....+-++.| ++.-++ |..+ T Consensus 172 --~---~~----------eiih~~~~~----~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l- 231 (422) T protein:vir:13 172 --L---PD----------EMLHFIGDI----TLDGLIGIKPLDYLRCTIENGRATQEFINKFFKNGLSIKGIVQYVGDL- 231 (422) T ss_pred --c---cc----------ceEEEcCCC----CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCCC- Confidence 0 00 133444221 12345799999988888875544433333445654 444333 2111 Q ss_pred ccCCCCcccccCccCCcccceeeeecC------CCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCc Q lcl|Aclame:pro 311 RTVPDESGMPPPQVFDPDVNVYKSIRM------GTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRS 384 (517) Q Consensus 311 ~~~~~~~~~~~~~~fd~~~~~y~~~~~------~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~ 384 (517) .+..-......|. ..|...+. -+++..++.++......+..+..+...++|+...|++|..++..+.+ T Consensus 232 ---~~e~~~~~~~~~~---~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVpp~~lg~~~~~ 305 (422) T protein:vir:13 232 ---DEKAKKIFKKEFE---SMSNGLENAHSISLLPFGYQFQPISLSMADAQFLENSKLTKRELAATFGMKSYHLNDLERA 305 (422) T ss_pred ---CHHHHHHHHHHHH---HHhcCccccCCceecCCCceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCC Confidence 0000001011111 01111110 02233355555555666777777778889999999999999865543 Q ss_pred c-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCC-CCCccceEEEeCCCccCCHHHHHHHHHHH Q lcl|Aclame:pro 385 M-KTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGE-IPSAEHIGVDFDDGVFQDRSALLRFYGQA 462 (517) Q Consensus 385 ~-~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~-~~~~~~v~i~f~d~i~~d~~~~~~~~~~~ 462 (517) . .++.+. . ...++.+|.-++..|-...+. .++... ....+.|.+++++-...|..+.++...++ T Consensus 306 ~~sn~e~~---~----------~~f~~~~l~P~~~~ie~~l~~-~Ll~~~~~~~g~~i~fd~~~l~r~d~~~~~~~~~~~ 371 (422) T protein:vir:13 306 TFNNLTEQ---Q----------KDFYVTTLQSSLTVYEQEIQD-KLFSQYETLQDVKAEFNVDTILRSDIKTRYEAYRIG 371 (422) T ss_pred CcccHHHH---H----------HHHHHHHHHHHHHHHHHHHHH-hhCChhhhcCCceEEeechhhhcCCHHHHHHHHHHH Confidence 2 222211 1 112233333333333221111 111111 11234566666666667889999999999 Q ss_pred HhcCCCCHHHHHHhhCCCCHH-HHHHHHHHHHHhccccCCCCCccccCCCCCCCC Q lcl|Aclame:pro 463 KTFGFIPTVEAIQRIFKVPKK-TAEQWLEEIRKDQIELDPVTISQRAQKRMFGDE 516 (517) Q Consensus 463 ~~~G~~S~~~~l~~~~~~~ee-ea~~el~~i~~E~~~~~~~~~~~~~~~~~~G~e 516 (517) +.+|+|+.-+++. ..|+..- ..++.+.. .--...+..+ .+.+..|..|++ T Consensus 372 ~~~G~~T~NE~R~-~~gl~p~~ggD~~~~~--~n~~~l~~~~-~~~~~~g~~~g~ 422 (422) T protein:vir:13 372 IQGGFIEANEARR-RENLPPVEGGDRLLVN--GNMIPIEMAG-EQYKKGGEKGGK 422 (422) T ss_pred HhCCCcCHHHHHH-HhCCCCCCCcCeeeec--cCccchhhcc-cccccCCCcCCC Confidence 9999999999665 4465432 12211111 0000001111 111222222333 No 146 >protein:vir:3843 Length: 397 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:322 # MgeName: phi adh # Cross-refs: genbank:acc:NP_050149;swissprot:trembl:q9t1f8;genbank:gi:9633041;uniprot:Q9T1F8;genbank:GeneID:1262206 Probab=98.34 E-value=1.2e-06 Score=52.98 Aligned_cols=379 Identities=9% Similarity=0.019 Sum_probs=157.2 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccCh----H Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNL----R 76 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~----~ 76 (517) |++|++.|.- +. .+.+++ ..|..++.+...-. +... +..+.... - T Consensus 1 M~~f~~~~~~----------~~--------~~~~~~------~~~~~~~~~~~~~~-~v~~------~~al~~~~V~~~v 49 (397) T protein:vir:38 1 MPLLKLNKSH----------SQ--------GFSLND------PDWVNFLTGGEAQK-YVSA------DTALKNSDIFSLI 49 (397) T ss_pred Ccchhhhhcc----------cC--------cccCCc------hhhhhhhcCCcCCc-eech------HHhhccHHHHHHH Confidence 9999655321 00 111111 12444433321110 0000 00111111 1 Q ss_pred HHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeC-Cee-E Q lcl|Aclame:pro 77 KLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDN-GEI-E 154 (517) Q Consensus 77 ~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~-g~~-~ 154 (517) +.||+..|.+= +.+.++ .....+.+--.......-++.++.+.+..|.+++.+..|. |.+ . T Consensus 50 ~~ia~~ia~~p------~~~~~~-----------~~~~l~~~PN~~~s~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~ 112 (397) T protein:vir:38 50 MQLSGDLAMVR------YTSESD-----------RSQSIISNPSVTANGYSFWQGMFAQLLLDGNCYAYRHKNTNGVDLS 112 (397) T ss_pred HHHHHHHhhCc------cccccc-----------HHHHHHhcCCCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEEE Confidence 45555555432 222221 1111111111111222333445566777888888777764 443 6 Q ss_pred EEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCccccccc Q lcl|Aclame:pro 155 FSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEE 234 (517) Q Consensus 155 i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~ 234 (517) +..++|+.+-++....++. .+|. ++ +. . ...|..+.+ T Consensus 113 l~~l~~~~v~i~~~~~~~~-----------------~~y~------------------~~---~~-~--~~~~~~~~~-- 149 (397) T protein:vir:38 113 WEYLRPSQVQPMLLQDGSG-----------------LIYN------------------IN---FD-E--PAIGYMENV-- 149 (397) T ss_pred EEEEcCceeEEEEcCCCce-----------------EEEE------------------EE---ec-c--ccccceeEe-- Confidence 7778888776542222111 1110 00 00 0 000111110 Q ss_pred ccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhc-cceeecchHHhccC Q lcl|Aclame:pro 235 LYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMG-QRTVFVSDVMLRTV 313 (517) Q Consensus 235 ~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~-~~~i~v~~~~l~~~ 313 (517) + +. -++||+.+.++ ...+|+|.+..+...|......-.-..+-++.| .+..++ +.. T Consensus 150 -~---~~----------eiih~~~~~~~----~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~~il-----~~~ 206 (397) T protein:vir:38 150 -P---AA----------DVIHIRLLSKN----GGKTGISPLSALINEQQIKDASNELTLKALKQSVTASAVL-----TIQ 206 (397) T ss_pred -c---Cc----------cEEEecCCCCC----CccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEE-----EeC Confidence 0 00 14466544322 234799999888887766544444344445544 333333 111 Q ss_pred CCCcccccCccCCcccceeeeec-C-----CCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccch Q lcl|Aclame:pro 314 PDESGMPPPQVFDPDVNVYKSIR-M-----GTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKT 387 (517) Q Consensus 314 ~~~~~~~~~~~fd~~~~~y~~~~-~-----~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~T 387 (517) ......... .+....+.+.... . -+++..++.++......++.+..+...++|+...|++|..+|...+...+ T Consensus 207 ~~~~~e~~~-~~~~~~~~~~~~~n~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~afgVp~~~lg~~~~~~~~ 285 (397) T protein:vir:38 207 KGGLLDAET-RIARSKEISKQIHNSDGPVVIDALEDYKPLEVKGNIASLLNQVDWTRDQIAKVYGVPDSYLNGQGDQQSS 285 (397) T ss_pred CCCCHHHHH-HHHHHHHHHhcccccCCceecCCCceEEecCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccH Confidence 111000000 0000000011110 0 01233355555555667778888888899999999999999865443322 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCC Q lcl|Aclame:pro 388 ATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGF 467 (517) Q Consensus 388 Atei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~ 467 (517) ..+... .+..+|..++..|....+. .++ +..+..+.| -+-.|.++.++.+..++.+|+ T Consensus 286 ~e~~~~--------------~~~~~l~P~~~~ie~~ln~-~l~-----~~~~~~~~~--~~~~d~~~~~~~~~~~~~~G~ 343 (397) T protein:vir:38 286 ITQISG--------------QYAKSLNRYVQAIVGELND-KLH-----ANISANIRF--AIDAMGDQYASTISSSVKGGT 343 (397) T ss_pred HHHHHH--------------HHHHHHHHHHHHHHHHHHH-hcc-----Chhcccccc--cccCCHHHHHHHHHHHHhCCC Confidence 222211 1222333333333221111 121 112222333 345678888998999999999 Q ss_pred CCHHHHHHhhCCCCH----HHHHHHHHHHHHhccccCCCCCc-cccCCCCCCCCC Q lcl|Aclame:pro 468 IPTVEAIQRIFKVPK----KTAEQWLEEIRKDQIELDPVTIS-QRAQKRMFGDEE 517 (517) Q Consensus 468 ~S~~~~l~~~~~~~e----eea~~el~~i~~E~~~~~~~~~~-~~~~~~~~G~ee 517 (517) |+..+++..+ |+.. +...-+..-+...+........+ .......+++.| T Consensus 344 ~t~nE~R~~l-g~~p~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~~~~~ 397 (397) T protein:vir:38 344 IAGNQARFIL-QNSGYLAKDLPDPEKEPQQAIQLIQQEGGENDGNNSDERGSDPE 397 (397) T ss_pred cCHHHHHHHh-CCCCCCCCccccccccccccccccccccCCCCCCCCCCCCCCCC Confidence 9999976543 4321 11100100000000000000111 111122334444 No 147 >protein:vir:79772 Length: 648 # NCBI annotation: portal protein # Family: family:all:3222 # MgeID: mge:1874 # MgeName: 0305phi8-36 # Cross-refs: genbank:acc:YP_001429612;genbank:gi:156564103;genbank:GeneID:5525537 Probab=98.28 E-value=1.7e-06 Score=52.17 Aligned_cols=439 Identities=10% Similarity=0.027 Sum_probs=169.7 Q ss_pred CchHHHHHHHHHHHHHHhhcccc--h---hhhcccc----------Cc-CCHHHHHHHHHHHHHhc---CCCcccc-ccc Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTL--K---SINDHEK----------IN-IDPNELARIERNLRQYE---GDYPQVE-YIN 60 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~--~---~~~~~~~----------i~-~~~~~~~~i~~~~~~Y~---g~~~~~~-~~~ 60 (517) -|.+++|..++|+--.-- +++ + .++..+. -. =++.|....+.-...-. |..+++. .++ T Consensus 8 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~d~~~~~~~r~g~~~~~~~~g~~~~~epp~d 85 (648) T protein:vir:79 8 RGFWSRISLMWRDEDDDK--EPLVLEESMQLGEAPGAMPKGGGGGGSAKRDPKMSLVKRIGLAIMDGGGGGRDFEEPEFD 85 (648) T ss_pred chhhhhhhhhccCccccc--cccccccccccCCCccccCCCCcccccccccchhHHHHHhHHHHHhhcCCccccccCCcC Confidence 678888888887211000 000 0 0000000 00 01222221111111111 1111110 000 Q ss_pred ccCccccccccccChHHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhC Q lcl|Aclame:pro 61 SQGKIQERDYMTLNLRKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALG 140 (517) Q Consensus 61 ~~~~~~~~~~~~ln~~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G 140 (517) -. .-.+-....+.....++.+|+.+..-+..+...+....+. ......+..-.........+..++.+.+..| T Consensus 86 ~~--~l~~l~~~np~V~~aI~iia~~ia~l~~~i~~~~~~~~~~-----~~~~~ll~rPn~~~t~~~f~~~l~~~lll~G 158 (648) T protein:vir:79 86 FN--EITSAYNTEGYVRQAVDKYIEMMFKADWDFVSKNPNAVEY-----IRMRFTLMAEATQIPTNQLFIEIAEDLVKYC 158 (648) T ss_pred HH--HHHHHHhcChHHHHHHHHHHHHHhhCcceEEecCCccchh-----hHHHHHhhccCCCCCHHHHHHHHHHHHHhcC Confidence 00 0001111223334455555555555454444333211110 1111111110001123445666778888899 Q ss_pred CEEEEEEEeCCeeEEEE---Ec------CCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceE Q lcl|Aclame:pro 141 GLTVRPYVDNGEIEFSW---AL------ANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLY 211 (517) Q Consensus 141 ~~~~k~~~d~g~~~i~~---v~------a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y 211 (517) .+|+.+..++.+....+ +. -..++|+.. .++. ......+. T Consensus 159 NAYveiiRd~~G~~~~~l~~~~~~~~~~v~~l~pl~p--~~v~--------v~~d~~g~--------------------- 207 (648) T protein:vir:79 159 NVVIAKSRAKDALPFQGMNVMGVGDSMPVAGYFPLNL--ASMK--------VKRDKFGM--------------------- 207 (648) T ss_pred CeEEEEEecCCCccchhhhhhhhccccceeeeEeecC--ceeE--------EEEcCCCc--------------------- Confidence 99988877653321111 11 112233211 0100 00000000 Q ss_pred EEEEEEeecCCccccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHH Q lcl|Aclame:pro 212 VITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQ 291 (517) Q Consensus 212 ~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~ 291 (517) +....|..... +..+++. +. -++||+.. ...+.++|+|.+.-+...|..... .+. T Consensus 208 -~~~Y~y~~~g~---~~~~~~~------~~----------dIIHik~~----~~~d~~~GlSpi~~a~~aI~l~~a-a~~ 262 (648) T protein:vir:79 208 -IKGWQQEQEGQ---DKPQKFK------PE----------DIVHIYYK----REKGRAFGTPWLLPALDDIRALRQ-VEE 262 (648) T ss_pred -eeeeEEEecCC---ceeEEec------Cc----------cEEEEccC----CCCCCceeccHHHHHHHHHHHHHH-HHH Confidence 00001211100 1111110 00 13455521 123456899999888877765533 333 Q ss_pred HH-HHHHhc-cceeecchHHhccCCCCcc-cccCccCCcccceeeeecCCCCCCcceE--Eeccc--ChHHHHHHHHHHH Q lcl|Aclame:pro 292 FW-WEIKMG-QRTVFVSDVMLRTVPDESG-MPPPQVFDPDVNVYKSIRMGTDEEFVKD--VTHDI--RTEQYKEAINQAL 364 (517) Q Consensus 292 ~~-~e~~~~-~~~i~v~~~~l~~~~~~~~-~~~~~~fd~~~~~y~~~~~~~~~~~v~~--~~~di--r~e~~~~~l~~~l 364 (517) +. +-|+.| .+..++ ....+... .......+.-...|......++....+. +.+.. .+.++.+..+... T Consensus 263 ~~~~fF~NGa~P~gil-----~~~~~~~~~e~~k~~~e~~~~~~~~~~i~gg~v~~~~~~i~~~~s~~dlqfle~rk~~~ 337 (648) T protein:vir:79 263 NVLRLVYRNLHPLWHV-----KVGLEQEGFGAEEGEVDLVRGEVENMDVEGGMVTTERVNISSIASNQIIDAKEYLKHFE 337 (648) T ss_pred HHHHHHhccCCccEEE-----EeCCCccchHHHHHHHHHHHHhcccccccccccccceeeccccCCHHHHHHHHHHHHHH Confidence 33 335544 333332 21100000 0000000000112232221112111122 22221 2335666677778 Q ss_pred HHHHHHhCCCccccccCCCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEE Q lcl|Aclame:pro 365 RTLEMELKLSVGTFSFDGRS-MKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVD 443 (517) Q Consensus 365 ~~i~~~~g~s~~~~~~~~~~-~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~ 443 (517) ++|+...|++|..+|+.+++ ..|+.+....+ ..++.-.+..+...+...+...+.+... +.......+.+.++ T Consensus 338 ~eIa~aFgVPP~lLG~~~~ss~stae~~~~~~---~~~i~~l~~~i~~~le~~~~~~ll~e~~---l~~~l~~d~~ieF~ 411 (648) T protein:vir:79 338 QRAFTVLGVSELMMGRGGTASRSTGDNLSSDF---KDRIKALQKVMATFINEFMVKEILMEGG---FDPVLNPDDKVEFR 411 (648) T ss_pred HHHHHHhCCCHhHcccCCCccchHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhhh---ccccccccceEEEe Confidence 89999999999999976543 33443332222 2233333334444433322211112111 11222345668899 Q ss_pred eCCCccCCHHHHHHHHHHHHhcCCCCHHHHHHhhCCC---CHHHHHHHHH-----HHHH--hc-cccCCCCCccccCCCC Q lcl|Aclame:pro 444 FDDGVFQDRSALLRFYGQAKTFGFIPTVEAIQRIFKV---PKKTAEQWLE-----EIRK--DQ-IELDPVTISQRAQKRM 512 (517) Q Consensus 444 f~d~i~~d~~~~~~~~~~~~~~G~~S~~~~l~~~~~~---~eeea~~el~-----~i~~--E~-~~~~~~~~~~~~~~~~ 512 (517) |++-...|+.+.++...+++++|+||..+++... |+ .+.+-...+. -..+ +. ....|...+.. ..+. T Consensus 412 ~~~Llr~D~~~~a~~~~~l~~~GilT~NEaR~~l-GlpPi~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~a~~ 489 (648) T protein:vir:79 412 FNEIDMDSKIKLENQAVFLYEHNAISEDEMRELI-GRDPVDDGEGRAKMHLQMVTIAQATALAALAPTPAGGSSA-SASG 489 (648) T ss_pred ecccchhhHHHHHHHHHHHHhCCCcCHHHHHHHh-CCCCCCCCCCccccccccccchhccccccCCCCCCCCCCC-Cccc Confidence 9988888888888888999999999999977643 43 3221111111 0000 00 01111111110 0110 Q ss_pred CC-CCC Q lcl|Aclame:pro 513 FG-DEE 517 (517) Q Consensus 513 ~G-~ee 517 (517) .| ..| T Consensus 490 eg~~~e 495 (648) T protein:vir:79 490 DKKKKA 495 (648) T ss_pred cccccc Confidence 00 011 No 148 >protein:vir:104500 Length: 537 # NCBI annotation: gp20 # Family: family:all:1036 # MgeID: mge:1548 # MgeName: P-SSM4 # Cross-refs: genbank:acc:YP_214665;genbank:gi:61806306;genbank:GeneID:3294555 Probab=98.26 E-value=1.9e-06 Score=51.95 Aligned_cols=441 Identities=13% Similarity=0.134 Sum_probs=199.4 Q ss_pred HHHHhhcccchhhhcc---ccCcCCHHHHHHHHHHHHHhcCCCcccccccccCcccc-----cccccc-ChH---HHHHH Q lcl|Aclame:pro 14 GGYALSGQTLKSINDH---EKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQE-----RDYMTL-NLR---KLSAD 81 (517) Q Consensus 14 ~~~~~~~~~~~~~~~~---~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~-----~~~~~l-n~~---~~i~~ 81 (517) |+..++...|+..... ..++.|..+...+.--..-|-|.. ...++..++ +...++ .-| ..|-. T Consensus 1 ~~~~lfg~~i~~~~~~~~~~s~~~~~~~dg~~~~~~~~~~g~~-----~~~e~~~~~~~eLI~~YR~ma~~pEvd~Av~e 75 (537) T protein:vir:10 1 MAQQLFGFSLQRAKKVPKGPSFVQKDSLDGSQPIVGGGYFGYS-----VDFDGTIRNDHELITRYREMVLNPECDSAVDD 75 (537) T ss_pred CccccccceeecccccccCCcccCCCcccccceeecccccccc-----cccccccchHHHHHHHHHHHhhccchhhHHHH Confidence 4444444444332221 122222222222211111111111 111111111 111111 111 11111 Q ss_pred HHhhhhc----CCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeCC-----e Q lcl|Aclame:pro 82 VLSGLVF----NEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDNG-----E 152 (517) Q Consensus 82 ~~A~ll~----~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~g-----~ 152 (517) -.-+.++ .+++++.+++-.. .+...++-.+..+.++.--+|.++..+....+.+.|..+||-++|.. = T Consensus 76 IVneaiv~d~~~~pV~i~Ld~~~~---s~~iK~kI~eEF~~Il~ll~F~~~~~e~fR~WYVDgRi~fhKiid~k~pk~GI 152 (537) T protein:vir:10 76 VVNETICGNFDDVPISIDLHNLKQ---SEKIKKLIRSEFDEILRLLDFDNRAYEIFRRWYVDGRLFFHKVIDPKKPRQGL 152 (537) T ss_pred hhcceeEecCCCceEEEEeccccc---chHHHHHHHHHHHHHHHHhccchhhhHHHhhheeeeEEEEEEEEeCCCccccc Confidence 1111111 1234455544322 22233445566777887778999999999999999999999999853 3 Q ss_pred eEEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEE-EEEEeecceeeccceEEEEEEEeecCC---ccccCc Q lcl|Aclame:pro 153 IEFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTL-LEFHEWEKTEEGESLYVITNELYKSDN---EGEIGK 228 (517) Q Consensus 153 ~~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~-lE~h~~~~~~~~~~~y~I~n~ly~~~~---~~~lG~ 228 (517) ..+..++|.++-++..--....... . +...+..++.. .|+ .+|.... +..-|. T Consensus 153 ~ELr~lDPr~i~~vR~i~~~~~~~~-~-----~~~~~~~v~~~~~ey-----------------f~ynp~g~~~~~~~~v 209 (537) T protein:vir:10 153 VELRYVDPRKIRKVTEYEAKRPEAL-R-----TQDLNQQLTQQSASY-----------------FLYNPKGLKNSTNQGM 209 (537) T ss_pred eeeeeeCCccceeeEeecccCCccc-e-----EEecceeeeecccce-----------------eeeccccccccCCCce Confidence 4588899998866532110000000 0 00001111100 111 1221110 111133 Q ss_pred ccccccccCCCCcceEE-cCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHH---Hhccceee Q lcl|Aclame:pro 229 RIPLEELYEGMQEKTYI-QGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEI---KMGQRTVF 304 (517) Q Consensus 229 ~v~l~~~~~~l~~~~~~-~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~---~~~~~~i~ 304 (517) .+|-+.+ ++. .|+ .+...+..+|-+..|.-.+-.| +..-..+-.+ |.-.+||| T Consensus 210 kI~~dAI-------~y~hSGl---------------~d~n~~~i~syLhkAiKp~NQL-km~EDAlVIYRitRAPeRRvF 266 (537) T protein:vir:10 210 KIAPDSI-------AYCHSGI---------------QDLNKNMVLSHLHKAIKAVNQL-RMIEDSLVIYRLSRAPERRIF 266 (537) T ss_pred eccHhhe-------eeecccc---------------eeCCCCeeeeeehhhhHHHHhh-HHHHhhHHHHhhhccccceEE Confidence 3332211 111 111 1112345567676666555555 3333333333 45556776 Q ss_pred c-c---------hHHhcc---------CCCCcccccCccCCcccceeeeecCC------CCCCc--ceEEecccChHHHH Q lcl|Aclame:pro 305 V-S---------DVMLRT---------VPDESGMPPPQVFDPDVNVYKSIRMG------TDEEF--VKDVTHDIRTEQYK 357 (517) Q Consensus 305 v-~---------~~~l~~---------~~~~~~~~~~~~fd~~~~~y~~~~~~------~~~~~--v~~~~~dir~e~~~ 357 (517) - + +.+|+. .-+...+. -.+++.++++.-+ +++.+ |+++..- .--.-. T Consensus 267 YIDVGnLPk~KAeqYlr~iM~k~KNklVYDa~TGe-----v~ddrk~msMlEDyWLPRReGgrgTEItTLpGg-qnlgem 340 (537) T protein:vir:10 267 YIDVGNLPKNKAEQYLREVMGRYRNKLVYDANTGE-----IKDDKKFMSMLEDFWLPRREGGRGTEISTLPGG-QNLGEL 340 (537) T ss_pred EEecCCCCchhHHHHHHHHHHhccceEEEeccCce-----ecccchhhhhhhhhcccccCCCcccceeecccc-CCcChH Confidence 3 1 111111 00111111 1244445543211 33333 4444322 211233 Q ss_pred HHHHHHHHHHHHHhCCCccccccCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCC Q lcl|Aclame:pro 358 EAINQALRTLEMELKLSVGTFSFDGR-SMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPS 436 (517) Q Consensus 358 ~~l~~~l~~i~~~~g~s~~~~~~~~~-~~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~ 436 (517) +-++-+.+.+....+.+.+-+..+++ ..+-++||.-..-.....+.+++..|..-+.++++.=|-|- +.+....+. T Consensus 341 ~DV~YF~kKLy~aLnVP~SRl~~e~~f~~Gr~~EItRDEiKF~KFI~RLR~rFs~lF~~~Lk~qLilK---giit~eeW~ 417 (537) T protein:vir:10 341 EDVKYFQKKLYKALNVPSSRLETETTFNIGRAAEITRDEVKFQKFIARLRKRFSELFVDLLKTQLILK---GICSIEEWE 417 (537) T ss_pred HHHHHHHHHHHHHhCCCccccCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc---cCCCHHHHH Confidence 44555666777777887777765543 23345677666666666777888888888888877765432 222222232 Q ss_pred c--cceEEEeCCCccCCHHHHHHHHHHHH---------hcCCCCHHHHHHhhCCCCHHHHHHHHHHHHHhcccc---CCC Q lcl|Aclame:pro 437 A--EHIGVDFDDGVFQDRSALLRFYGQAK---------TFGFIPTVEAIQRIFKVPKKTAEQWLEEIRKDQIEL---DPV 502 (517) Q Consensus 437 ~--~~v~i~f~d~i~~d~~~~~~~~~~~~---------~~G~~S~~~~l~~~~~~~eeea~~el~~i~~E~~~~---~~~ 502 (517) . ..|.++|...---.+..+++.+.+-. -+-..|.+...++...+||+|.+++.+.|++|..+. +|. T Consensus 418 ~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~s~dyi~k~ILr~tDeeI~~~~k~I~~E~k~~~~~~p~ 497 (537) T protein:vir:10 418 EMKEHIQFDFIADNYFTELKEIEIRNERMNEVAQMDPYVGKYFSANYIRTKVLKQTESEIKEIDKEIKQEIADGVIMDPQ 497 (537) T ss_pred HHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHHhccCHHHHHHHHHHHHHHhhCCCCCCcc Confidence 2 45777776554444444444332211 111468888777788999999999999999887542 221 Q ss_pred CCcc---c--cCCC-CCCCCC Q lcl|Aclame:pro 503 TISQ---R--AQKR-MFGDEE 517 (517) Q Consensus 503 ~~~~---~--~~~~-~~G~ee 517 (517) ..+. . .... ..|++| T Consensus 498 ~~~~~~~~~~~~~~~~~~~~~ 518 (537) T protein:vir:10 498 AMQAMEMGIGDEEPVPEGGEE 518 (537) T ss_pred cccccccCCCCcccCCCCCCC Confidence 1110 0 0000 011122 No 149 >protein:vir:9263 Length: 725 # NCBI annotation: 1 # Family: family:all:487 # MgeID: mge:164 # MgeName: ST64T # Cross-refs: genbank:acc:NP_720327;genbank:gi:24371585;genbank:GeneID:955785 Probab=98.26 E-value=2e-06 Score=51.89 Aligned_cols=463 Identities=9% Similarity=-0.035 Sum_probs=213.4 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCccc---ccccccCccccccccccChHH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQV---EYINSQGKIQERDYMTLNLRK 77 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~---~~~~~~~~~~~~~~~~ln~~~ 77 (517) =..+++++.+|+.-- .-.++-.....+..+||.|....- ...... .+..+|+-+ T Consensus 5 ~~~~~~~~~~~~~~~-----------------~~~~~~r~~a~~d~~fy~G~Qw~~~~~~~l~~q------~rp~~N~i~ 61 (725) T protein:vir:92 5 ENRLESILSRFDADW-----------------TASDEARREAKNDLFFSRISQWDDWLSQYTTLQ------YRGQFDVVR 61 (725) T ss_pred HHHHHHHHHHHHHHH-----------------HhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHhc------CCCcccchH Confidence 134555555554211 112445556678889999975421 111111 223567767 Q ss_pred HHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe----C--- Q lcl|Aclame:pro 78 LSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD----N--- 150 (517) Q Consensus 78 ~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d----~--- 150 (517) .+++...+.--.-.+.+.+.-. +..+....+.++..+.-+...++......++...+...|.||+.++.| + T Consensus 62 ~~i~~v~g~e~~nr~d~~v~P~--~~~d~~~Ae~l~~~~~~~~~~~~~~~a~s~Af~~~i~~G~G~~ev~~d~~~~d~~~ 139 (725) T protein:vir:92 62 PVVRKLVSEMRQNPIDVLYRPK--DGASPDAADVLMGMYRTDMRHNTAKIAVNVAVREQIESGVGAWRLVTDYEDQSPTS 139 (725) T ss_pred HHHHHHHhhHHhCCcceEEecC--CccHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhcCcceeeeeecccCCCCCC Confidence 6776666655555667766422 223334455666777777777888888899999999999999998754 1 Q ss_pred CeeEEEEE----cCCeEE--EEEEcCCceEEEEEEEEEEEE-----------ecC-------------------CcEEEE Q lcl|Aclame:pro 151 GEIEFSWA----LANAFY--PLRSNSNGISEGVMKSVTTKV-----------IGN-------------------KTVYYT 194 (517) Q Consensus 151 g~~~i~~v----~a~~~~--P~~~~~~~~~~~a~~~~~~~~-----------~~~-------------------~~~~yt 194 (517) +.++|..+ |..+++ |-+... ....|-++++.... .+. .....+ T Consensus 140 ~~~~i~~~~i~~~~~~V~~Dp~a~~~-D~sDar~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vr 218 (725) T protein:vir:92 140 NNQVIRREPIHSACSHVIWDSNSKLM-DKSDSRHCTVIHSMSQNGWEDFAEKYDLDADDIPSFQNPNDWVFPWLTQDTIQ 218 (725) T ss_pred CceeeEEeeccCChhhcccCchhhcc-ChhhHHHHHHHhcCCHHHHHHHHhhcCcchhhhhhcccCCcccccccCCCeEE Confidence 33444433 233333 211100 00001000000000 000 001122 Q ss_pred EEEEEeecceeeccceEEEEEEEeecCCccccCcccccc-----cc-----cCCCC---c------ce---EEcCC---- Q lcl|Aclame:pro 195 LLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLE-----EL-----YEGMQ---E------KT---YIQGL---- 248 (517) Q Consensus 195 ~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~-----~~-----~~~l~---~------~~---~~~g~---- 248 (517) .+|+++... +.-.+|...+. ..|..+... .+ -+++. . .+ .+.|- T Consensus 219 v~e~~~r~~---------~~~~~~~~~d~-~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~r~~~~~kv~~~~~~g~~~l~ 288 (725) T protein:vir:92 219 IAEFYEVVE---------KKETAFIYQDP-VTGEPVSYFKRDIKDVIDDLADSGFIKIAERQIKRRRVYKSIITCTAVLK 288 (725) T ss_pred EEEEEEEEE---------EeeeEEeecCC-CCCceeecChhhHHHHHHHHhccCchhhhhccceeeeEeeeeecchhhhc Confidence 233322110 01111111110 001111100 00 00000 0 00 01110 Q ss_pred -------CcceEEEecCCcccc-ccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHH-HhccceeecchHHhccCCCCccc Q lcl|Aclame:pro 249 -------SRPLFNYLKPSGFNN-INPHSPLGLGITDNSVSTLKKINDTYDQFWWEI-KMGQRTVFVSDVMLRTVPDESGM 319 (517) Q Consensus 249 -------~~p~f~~~~~~~~N~-~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~-~~~~~~i~v~~~~l~~~~~~~~~ 319 (517) +..||++| .... -..++|++-+.+.++++..+.+|...|...+.+ ...+.+..++.+.+...... . T Consensus 289 ~~~~~~~~~~P~vP~---~g~r~~~~g~~~~~G~vr~~kd~Q~~~N~~~S~~~~~~~~~~~~~~~~~~~~i~~~~~~--~ 363 (725) T protein:vir:92 289 DKQLIAGEHIPIVPV---FGEWGFVEDKEVYEGVVRLTKDGQRLRNMIMSFNADIVARTPKKKPFFWPEQIAGFEHM--Y 363 (725) T ss_pred CCCCCCCCceeeEEE---EeeeeccCCcccccceeccchhHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHH--H Confidence 11122211 0111 124678877889999999999999999999998 56666667777665421100 0 Q ss_pred ccCccCCcccceeeeec------CCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHHHH Q lcl|Aclame:pro 320 PPPQVFDPDVNVYKSIR------MGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVS 393 (517) Q Consensus 320 ~~~~~fd~~~~~y~~~~------~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a 393 (517) . ..+...|...+ +.-....++.+++.=-..+++..++.....|...+|++...+|-.++ ..++-.|.+ T Consensus 364 ~-----~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~p~~~~~ll~~~~~~i~~~tGi~~~~lG~~~n-~~SG~ai~~ 437 (725) T protein:vir:92 364 D-----GNDDYPYYLLNRTDENNGEMPTQPLAYYENPEVPQANAYMLEAATAAVKEVATLGVDAEAVNGG-QVAYDTVNQ 437 (725) T ss_pred h-----ccCccceeeccccccccccccccCCcccCCCCchHHHHHHHHHHHHHHHHHhCCCHHHhccCch-hhHHHHHHH Confidence 0 01111111111 11112234444433233578888988888899999999988886442 233444555 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hh---ccCCCCC----------------------------CccceE Q lcl|Aclame:pro 394 ENDLTYRTRNDHVYEVEQFIKGLVISVLELAKT-YK---LFGGEIP----------------------------SAEHIG 441 (517) Q Consensus 394 ~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~-~~---~~~~~~~----------------------------~~~~v~ 441 (517) +..............++.+.+.+-+.+|.+... ++ .+..... +.++|. T Consensus 438 rq~qg~~~l~~~~Dnl~~~~~~~g~~lL~lI~~~~~~~r~~RI~~edg~~~~v~in~~~~~~~~G~~~~~Ndi~g~~Dv~ 517 (725) T protein:vir:92 438 LNMRADLETYVFQDNLATAMRRDGEIYQSIVNDIYDVPRNVTITLEDGSEKEVQLMAEVVDLATGERQVLNDIRGRYECY 517 (725) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCcceEEeccccccccccchhhhhccccceeeE Confidence 555555555666777777777776666665332 11 0000000 123444 Q ss_pred EEeCCCccCCHHHHHHHHHHHHhcC--CCCH-HHHHHhhCCCCH-HHHHHHHHHHHHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 442 VDFDDGVFQDRSALLRFYGQAKTFG--FIPT-VEAIQRIFKVPK-KTAEQWLEEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 442 i~f~d~i~~d~~~~~~~~~~~~~~G--~~S~-~~~l~~~~~~~e-eea~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) |+=..+...=.++.++.++++..+- ..+. -..+.......+ +-+.+.+++|+....+..... +. ...++ T Consensus 518 v~~~p~~~s~r~~~~~~l~ql~~~~~~~~~~~~~~l~~~~~~~d~~~~~e~~erirkq~~~~~~~~----~~---~~e~~ 590 (725) T protein:vir:92 518 TDVGPSFQSMKQQNRAEILELLGKTPQGTPEYQLLLLQYFTLLDGKGVEMMRDYANKQLIQMGVKK----PE---TPEEQ 590 (725) T ss_pred EeeccChHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhcccchHHHHHHHHHHhhhchhccCC----cc---chhhh Confidence 4422222222345555555655331 1111 112333233322 224445566655432222110 00 01111 No 150 >protein:vir:7407 Length: 392 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:146 # MgeName: P335 # Cross-refs: genbank:acc:NP_839924;genbank:gi:30089894;genbank:GeneID:1260681 Probab=98.25 E-value=2e-06 Score=51.81 Aligned_cols=378 Identities=11% Similarity=0.069 Sum_probs=155.2 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccChH---- Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLR---- 76 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~---- 76 (517) ||+| +||++............... . ..-..+..++.+.... .. -.+..+....- T Consensus 3 m~~~----~~~~~~~~~~~~~~~~~~~~------~----~~~~~~~~~~~~~~g~-~v-------~~~~al~~~~v~~~v 60 (392) T protein:vir:74 3 LPIL----NFINQTNDPPEAGSVQSYFP------D----GNDAQIMESLLGDNNE-WV-------SARAALRNSDLFSII 60 (392) T ss_pred chhh----hhhhcccCcccccccccccc------c----CchhhhhhhccCCCCc-cc-------chhhhhcchHHHHHH Confidence 6665 45554322111111110000 0 0001122233332111 00 00111111111 Q ss_pred HHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe-CCee-E Q lcl|Aclame:pro 77 KLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD-NGEI-E 154 (517) Q Consensus 77 ~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d-~g~~-~ 154 (517) ..||+..|+| | +.+-.... ...+++--....-..-++.++.+.+..|.+++.+..| +|++ . T Consensus 61 ~~ia~~ia~l----p--~~~~~~~~-----------~~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~ 123 (392) T protein:vir:74 61 LQLSSDLAIV----K--INAEKKKN-----------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMK 123 (392) T ss_pred HHHHHhhccC----c--eeeccchh-----------hhhhhhcCCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEEE Confidence 3445555543 2 22222110 0111111000111223334556777789888777766 4554 5 Q ss_pred EEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCccccccc Q lcl|Aclame:pro 155 FSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEE 234 (517) Q Consensus 155 i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~ 234 (517) +..++|+.+-+.....++. .+|+ +. +... ..+..+.+ T Consensus 124 L~~i~~~~v~v~~~~~~~~-----------------~~y~------------------~~---~~~~---~~~~~~~~-- 160 (392) T protein:vir:74 124 WEYLRPSQVNTYYFEYENG-----------------MYYN------------------IT---FDDP---KIEPILQA-- 160 (392) T ss_pred EEEEcCceeEEEEcCCCce-----------------EEEE------------------EE---ecCC---ccceeEEE-- Confidence 7777777766532222111 1111 00 0000 00000000 Q ss_pred ccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHH-HHHhc-cceee--cchHHh Q lcl|Aclame:pro 235 LYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWW-EIKMG-QRTVF--VSDVML 310 (517) Q Consensus 235 ~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~-e~~~~-~~~i~--v~~~~l 310 (517) + +++ ++||+.+.++ +..+|+|-+.-+...|+.. ....++.. -|+.| .+.-+ +|.... T Consensus 161 -~---~~e----------vih~~~~~~~----~~~~G~s~i~~~~~~i~~~-~~~~~~~~~~f~ng~~p~~il~~~~~~~ 221 (392) T protein:vir:74 161 -P---QSD----------LIHMKLLSID----GGKTGISPLYSLRRESKIQ-RASDRLTISSLNSSLNVPGVLTVKGGGL 221 (392) T ss_pred -c---Ccc----------EEEecCCCCC----CccccccHHHHHHHHHHHH-HHHHHHHHHHHhccCCCceEEEeCCCCC Confidence 0 011 3455443221 3356999998888888554 44445544 45654 33333 222211 Q ss_pred ccCCCCcccccCccCCcccceeeeecCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHH Q lcl|Aclame:pro 311 RTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATE 390 (517) Q Consensus 311 ~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAte 390 (517) ..+ .........|....+....+-. +++-.++.++....+.+..+..+...++|+..-|++|..+|+.+....++++ T Consensus 222 ~~~--~~~~~~~~~~~~~~n~g~~~vl-~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~e~ 298 (392) T protein:vir:74 222 LSD--KDKASRSRSFMKRSRSGGPVVL-DDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQ 298 (392) T ss_pred chH--HHHHHHHHHHhccccCCCeeec-CCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccHHHH Confidence 100 0000000001000000000001 2333455566565667788888888889999999999999864433322222 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCCH Q lcl|Aclame:pro 391 IVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPT 470 (517) Q Consensus 391 i~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~ 470 (517) ..+ .++.+|..+++.|..-.+. .+. . .+.+++..-+-.|..+.+..+..++.+|+++. T Consensus 299 ~~~--------------~~~~~l~p~~~~ie~~l~~-~l~-----~--~~~~~~~~~~~~d~~~~~~~~~~l~~~g~~t~ 356 (392) T protein:vir:74 299 ISG--------------MYASALNRYLRPAISELEY-KLS-----D--HISVNMRPAIDPLGDNYLSTISTATRWGALAE 356 (392) T ss_pred HHH--------------HHHHHHHHHHHHHHHHHHH-hcc-----c--hhcccchhhhcCCHHHHHHHHHHHHhCCCcCH Confidence 211 2222333333332221111 111 1 12223333334567778888889999999999 Q ss_pred HHHHHhh--CCCCHHHHHHHHHHHHHhccccCCCCCccccCC Q lcl|Aclame:pro 471 VEAIQRI--FKVPKKTAEQWLEEIRKDQIELDPVTISQRAQK 510 (517) Q Consensus 471 ~~~l~~~--~~~~eeea~~el~~i~~E~~~~~~~~~~~~~~~ 510 (517) .++...+ -|+...++.+ .|...+.+.++...|-+ T Consensus 357 near~~~~~~g~~pne~r~------~enl~~~~~Gd~~~p~p 392 (392) T protein:vir:74 357 NQATFVLQEAGYIPKDLPA------PENTNKKTTGQSNEPVP 392 (392) T ss_pred HHHHHHHHhCCCCccccch------hcCCCCCCCCCCCCCCC Confidence 8876543 4665544322 12322222222222222 No 151 >protein:vir:100920 Length: 725 # NCBI annotation: Gp1 # Family: family:all:487 # MgeID: mge:1509 # MgeName: ST104 # Cross-refs: genbank:acc:YP_006406;genbank:gi:46358698;genbank:GeneID:2777070 Probab=98.24 E-value=2.2e-06 Score=51.59 Aligned_cols=463 Identities=10% Similarity=-0.025 Sum_probs=216.9 Q ss_pred Cc----hHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcc---cccccccCcccccccccc Q lcl|Aclame:pro 1 MK----VIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQ---VEYINSQGKIQERDYMTL 73 (517) Q Consensus 1 m~----~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~---~~~~~~~~~~~~~~~~~l 73 (517) |. .+++++.+|+.- +.-.++-.....+..+||.|.... +...... .+..+ T Consensus 1 m~d~~~~~~~~~~~~~~~-----------------~~~~~~~R~~a~~d~~fy~G~QW~~~~~~~l~~q------~rp~~ 57 (725) T protein:vir:10 1 MADNENRLESILSRFDAD-----------------WTASDEARREAKNDLFFSRVSQWDDWLSQYTTLQ------YRGQF 57 (725) T ss_pred CCchHHHHHHHHHHHHHH-----------------HHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHhc------CCCcc Confidence 43 344444444321 111244556677888999997542 1111111 22356 Q ss_pred ChHHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe---C Q lcl|Aclame:pro 74 NLRKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD---N 150 (517) Q Consensus 74 n~~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d---~ 150 (517) |+-+.+++...+.--.-.+.+.|.-. +..+....+.++..+..+.+.++.......+...+...|.||+++.+| . T Consensus 58 N~i~~~v~~v~g~e~~nr~d~~v~p~--~~~d~~~Ae~l~~~~~~~~~~~~~~~~~s~Af~~~i~~G~G~~ev~~d~~~~ 135 (725) T protein:vir:10 58 DVVRPVVRKLVSEMRQNPIDVLYRPK--DGASPDAADVLMGMYRTDMRHNTAKIAVNIAVREQIEAGVGAWRLVTDYEDQ 135 (725) T ss_pred cchHHHHHHHHhhHHhCCcceEEecC--CcchHHHHHHHHHHHHHHHHhcCcchHHhHHHHHHhhcCcceeeeeccccCC Confidence 88788888777766666777777432 223334455666677777777888888889999999999999998754 1 Q ss_pred ----CeeEEEEE----cCCeEEEEEEcCC--ceEEEEEEEEEEEEe-----------cCC-------------------c Q lcl|Aclame:pro 151 ----GEIEFSWA----LANAFYPLRSNSN--GISEGVMKSVTTKVI-----------GNK-------------------T 190 (517) Q Consensus 151 ----g~~~i~~v----~a~~~~P~~~~~~--~~~~~a~~~~~~~~~-----------~~~-------------------~ 190 (517) +.+.|..+ ++.+++. ..++. ....|-++++..... +.. . T Consensus 136 d~~~~~~~i~~~~i~~~~~~v~~-Dp~a~~~D~sDar~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 214 (725) T protein:vir:10 136 SPTSNNQVIRREPIHSACSHVIW-DSNSKLMDKSDARHCTVIHSMSQNGWDDFAEKYDLDADNIPSFQNPNDWVFPWLTQ 214 (725) T ss_pred CCCCCceeeeeeecccCHhHccc-CchhhccChhhhhhhhhhccCCHHHHHHHHHhCCCcccccccccccccccccccCC Confidence 23444433 3444442 11110 111111111111110 000 0 Q ss_pred EEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccc-----cc-----cCCCC---c------ce---EEcCC Q lcl|Aclame:pro 191 VYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLE-----EL-----YEGMQ---E------KT---YIQGL 248 (517) Q Consensus 191 ~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~-----~~-----~~~l~---~------~~---~~~g~ 248 (517) ..-+.+|+++... +.-.+|...+. ..|..+... .+ -+++. . .+ .+.|- T Consensus 215 ~~vrv~E~~~r~~---------~~~~~~~~~d~-~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~r~~~~~kv~~~~~~g~ 284 (725) T protein:vir:10 215 DTIQIAEFYEVVE---------KKETAFIYQDP-VTGEPVSYFKRDIKDVIDDLADSGFIKIAERQIKRRRVYKSIITCT 284 (725) T ss_pred CeEEEEEEEEEEE---------EeeEEEEeccC-CCCceeecchhhhHHHHHHhhcccchhhhhccceeeEEEEEeecch Confidence 0112223322110 00011111110 011111100 00 00000 0 00 01110 Q ss_pred -----------CcceEEEecCCcccc-ccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHH-HhccceeecchHHhccCCC Q lcl|Aclame:pro 249 -----------SRPLFNYLKPSGFNN-INPHSPLGLGITDNSVSTLKKINDTYDQFWWEI-KMGQRTVFVSDVMLRTVPD 315 (517) Q Consensus 249 -----------~~p~f~~~~~~~~N~-~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~-~~~~~~i~v~~~~l~~~~~ 315 (517) +..||++| .... ...++|++-+.+.++++.++.+|...|...+.+ ..++.+..++.+.+..... T Consensus 285 ~~l~~~~~~~~~~fP~vP~---~g~r~~~~g~~~~~G~vr~~kd~Q~~~N~~~s~~~~~~~~~~~~~~~~~~~~i~~~e~ 361 (725) T protein:vir:10 285 AVLKDKQLIAGEHIPIVPV---FGEWGFVEDKEVYEGVVRLTKDGQRLRNMIMSFNADIVARTPKKKPFFWPEQIAGFEH 361 (725) T ss_pred hhhcCCCCCCCCceeEEEE---EeeeeccCCcceeeeeeccchhHHHHHHHHHHHHHHHHHhcCCccccccHhhhhHHHH Confidence 11112211 0111 124678877889999999999999999999999 5667777777666542110 Q ss_pred CcccccCccCCcccceeeeec------CCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHH Q lcl|Aclame:pro 316 ESGMPPPQVFDPDVNVYKSIR------MGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTAT 389 (517) Q Consensus 316 ~~~~~~~~~fd~~~~~y~~~~------~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAt 389 (517) - . -..+...|...+ +.-....+..+++.=-..+++..++.....|...+|++...+|-.++ ..++- T Consensus 362 ~--~-----~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~p~~~~~ll~~~~~~i~~~tGi~~~~lG~~~n-~~SG~ 433 (725) T protein:vir:10 362 M--Y-----DGNDDYPYYLLNRTDENNGEMPTQPLAYYENPEVPQANAYMLEAATAAVKEVATLGVDAEAVNGG-QVAYD 433 (725) T ss_pred H--H-----hccCCceeeecccccccCcccccccCcccCCCCchHHHHHHHHHHHHHHHHHhCCCHHHhCcCch-hhHHH Confidence 0 0 011111121111 11112234333322223577788888888899999999988876442 23344 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hh---ccCCCCC----------------------------Cc Q lcl|Aclame:pro 390 EIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKT-YK---LFGGEIP----------------------------SA 437 (517) Q Consensus 390 ei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~-~~---~~~~~~~----------------------------~~ 437 (517) .|.++..............++.+++.+-+.+|.+... ++ .+..... +. T Consensus 434 ai~~rq~qg~~~l~~~~Dnl~~~~~~~g~~lL~lI~~~~~~er~~RI~~edg~~~~v~in~~~~d~~~G~~v~~Ndi~g~ 513 (725) T protein:vir:10 434 TVNQLNMRADLETYVFQDNLATAMRRDGEIYQSIVNDIYDVPRNVTITLEDGSEKEVQLMAEVVDLATGERQVLNDIRGR 513 (725) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEecCCCCcceeEeccccccccccchhhhhccccc Confidence 4555555555555666777777777777766665332 11 0000000 12 Q ss_pred cceEEEeCCCccCCHHHHHHHHHHHHhcC--CCCH-HHHHHhhCCCCH-HHHHHHHHHHHHhccccCCCCCccccCCCCC Q lcl|Aclame:pro 438 EHIGVDFDDGVFQDRSALLRFYGQAKTFG--FIPT-VEAIQRIFKVPK-KTAEQWLEEIRKDQIELDPVTISQRAQKRMF 513 (517) Q Consensus 438 ~~v~i~f~d~i~~d~~~~~~~~~~~~~~G--~~S~-~~~l~~~~~~~e-eea~~el~~i~~E~~~~~~~~~~~~~~~~~~ 513 (517) ++|.|+=..+...=.++.++.++++..+- ..+. -..+..+.+..+ +-+++.+++|+.......+... . . T Consensus 514 ~Dv~v~~~p~~~s~r~~~~~~l~qll~~~~~~~~~~~~~l~~~~~~~d~~~~~e~~erirkq~~~~~~~~~----~---~ 586 (725) T protein:vir:10 514 YECYTDVGPSFQSMKQQNRSEILELLGKTPQGTPEYQLLLLQYFTLLDGKGVEMMRDYANKQLIQMGVKKP----E---T 586 (725) T ss_pred eeEEEeeccCcHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCCchhHHHHHHHHHhhhhhhccCCc----c---c Confidence 34444432222222345555566665321 1121 122333333222 2344556666654322221100 0 0 Q ss_pred CCCC Q lcl|Aclame:pro 514 GDEE 517 (517) Q Consensus 514 G~ee 517 (517) .+++ T Consensus 587 ~e~~ 590 (725) T protein:vir:10 587 PEEQ 590 (725) T ss_pred cchh Confidence 1111 No 152 >protein:vir:10321 Length: 495 # NCBI annotation: ORF23 # Family: family:all:47 # MgeID: mge:182 # MgeName: VHML # Cross-refs: genbank:acc:NP_758916;genbank:gi:27311190;genbank:GeneID:956137 Probab=98.22 E-value=2.5e-06 Score=51.31 Aligned_cols=431 Identities=11% Similarity=0.030 Sum_probs=190.5 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcc--c---ccccccC------c-cccc Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQ--V---EYINSQG------K-IQER 68 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~--~---~~~~~~~------~-~~~~ 68 (517) |+|+.+ .++- +.-..+-..+.+-|+|--.. . ..+..+. . ...| T Consensus 1 m~~~~~--~~~a-----------------------~~~~~~~~~~~~~y~aa~~~~~~~~~~~~s~d~~~~~~~~~lr~R 55 (495) T protein:vir:10 1 MNMTPS--GYQS-----------------------LASGLLVPVGASAYEGASGGHRWQDIGDYGPDTAVASGIQTLRAR 55 (495) T ss_pred CCcccc--cccc-----------------------cchhhhhHHHhhhhhccccCcccCCCCCCChhHHHHHHHHHHHHH Confidence 777755 2210 00000001111222221000 0 0000000 0 0000 Q ss_pred ---cccccChHHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhh------hhHHHHHHHHHHHHHhh Q lcl|Aclame:pro 69 ---DYMTLNLRKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQH------NKFIKNLSDYLEPTFAL 139 (517) Q Consensus 69 ---~~~~ln~~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~------n~f~~~~~~~~~~a~~~ 139 (517) -....++++.+++.+.+.+++. .|+..-.. ..++.....++.+....++ .+|......++...+.. T Consensus 56 aRdl~rNn~~a~~av~~~~~~vVG~--Gi~p~~~~---~~~~~~~~ie~~w~~wa~~~D~~g~~~f~~lq~l~~r~~~~d 130 (495) T protein:vir:10 56 SHHNVRNNPWATNAVATWVAAAVGN--GLTPRWRM---KEQELRQELQELWGDWVNEADFDEVQSFYGLQALVVRTVINS 130 (495) T ss_pred HHHHHhcChHHHHHHHHHHHhhcCC--CcccccCC---chHHHHHHHHHHHHHhhcCcccccccCHHHHHHHHHHHHHhC Confidence 0112367788999999999986 34332111 1122233334444443332 35777777888888999 Q ss_pred CCEEEEEEEeC---C---eeEEEEEcCCeEE-EEEE----cCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeecc Q lcl|Aclame:pro 140 GGLTVRPYVDN---G---EIEFSWALANAFY-PLRS----NSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGE 208 (517) Q Consensus 140 G~~~~k~~~d~---g---~~~i~~v~a~~~~-P~~~----~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~ 208 (517) |.++++..+.. | .+++..++|+.+- |... +.+.+..+|-+ ... +...-|.....| ++ + T Consensus 131 GE~f~~~~~~~~~~g~~~~~~lqliepd~l~~~~~~~~~~~g~~i~~GIe~----d~~-Gr~vaY~i~~~h-pg-----d 199 (495) T protein:vir:10 131 GEAFVIKKPRPLSEGLSVPLQLQIIEPDMLASDIPDETLPSGGYVKGGIRF----SNG-GKRKAYCFYRNH-PA-----E 199 (495) T ss_pred CceEEEEeecccCCCCccceEEEEechhhcCCCCCCCCCCCCCEEEeceEE----CCC-CceEEEEEeecC-CC-----c Confidence 99988877752 2 3689999999963 4211 11234444421 111 112222222222 11 0 Q ss_pred ceEEEEEEEeecCCccccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHH Q lcl|Aclame:pro 209 SLYVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDT 288 (517) Q Consensus 209 ~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~ 288 (517) + ...+.... +.. ++..-+.|+.+. .++.-.|+|.++-+.. +..+|.- T Consensus 200 ~--------------~~~~~~~~----~~r---------vpA~~vlH~f~~-----r~gQ~RGis~la~i~~-l~~l~~y 246 (495) T protein:vir:10 200 S--------------SLIGDPVD----TVW---------IKAEHVLHVTVL-----TVRSDAGAPWFQLLLR-LNELDQY 246 (495) T ss_pred c--------------cccccccc----eee---------echhheEecccc-----CCCcccCcchhHHHHH-HHHhhHH Confidence 0 00000000 111 121223344222 3466679999986554 5555543 Q ss_pred HHHH-HHHHHhccceeecchHHhccC-CCCccccc-Cc-cCCcccceeeeecC-----CCCCCcceEEecccChHHHHHH Q lcl|Aclame:pro 289 YDQF-WWEIKMGQRTVFVSDVMLRTV-PDESGMPP-PQ-VFDPDVNVYKSIRM-----GTDEEFVKDVTHDIRTEQYKEA 359 (517) Q Consensus 289 ~s~~-~~e~~~~~~~i~v~~~~l~~~-~~~~~~~~-~~-~fd~~~~~y~~~~~-----~~~~~~v~~~~~dir~e~~~~~ 359 (517) -+.- ....-.+--..|| ++. ++...... .. ..+........+.. =..+..++.++|.=+...+..- T Consensus 247 ~dael~~a~i~A~~~~fi-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pG~i~~L~pGe~i~~~~p~~p~~~~~~f 321 (495) T protein:vir:10 247 EDAELVRKKTAALFAAFI-----QEATADSTGGPTIGQPKRSKGGKRITGLNPGTLQYLQPGQEVKFSNPADVGTTYEPW 321 (495) T ss_pred HHHHHHHHHHhhhheeee-----ecCCCccccccccCccccccCcccceecCCceeeecCCCCeeeeeCCCCCCCCHHHH Confidence 3322 2211222223333 211 11111100 00 00000000111110 0244568889988777778888 Q ss_pred HHHHHHHHHHHhCCCccccccCCCcc--chHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHhhhhccCCCC- Q lcl|Aclame:pro 360 INQALRTLEMELKLSVGTFSFDGRSM--KTATEIVSENDLTYRTRNDHVY-EVEQ-FIKGLVISVLELAKTYKLFGGEI- 434 (517) Q Consensus 360 l~~~l~~i~~~~g~s~~~~~~~~~~~--~TAtei~a~~~~~~~t~~~~~~-~~~~-al~~li~~il~~~~~~~~~~~~~- 434 (517) ...+++.|....|+++..++-|-+++ .++-.......+++. ..|. .+-. .++.+.+..+..+-. .+... T Consensus 322 ~~~~lr~iaaglGi~Ye~ltgD~s~~nYSS~R~~~~e~~r~~~---~~q~~~~~~~~~~pi~~~~l~~a~l---~G~i~~ 395 (495) T protein:vir:10 322 LRYQLLSIAKGYGITYEMLTGDLRGVNYSSIRAGLLEFRRLCQ---QVQHHMIIHQFCRPVGRWFMDFAVA---SGAVVI 395 (495) T ss_pred HHHHHHHHHhhcCCCHHHHhcccccccHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH---cCCCCC Confidence 88889999999999999987654332 233333333333332 2222 1222 222223322332211 11111 Q ss_pred CCc-----cceEEEe--CCCccCCHHHHHHHHHHHHhcCCCCHHHHHHhhCCCCHHHHHHHHH----HHHHhccc--cCC Q lcl|Aclame:pro 435 PSA-----EHIGVDF--DDGVFQDRSALLRFYGQAKTFGFIPTVEAIQRIFKVPKKTAEQWLE----EIRKDQIE--LDP 501 (517) Q Consensus 435 ~~~-----~~v~i~f--~d~i~~d~~~~~~~~~~~~~~G~~S~~~~l~~~~~~~eeea~~el~----~i~~E~~~--~~~ 501 (517) ++. .-+.+.| .--..+|+.++++.....+.+|+.|.++.+++. |.+-+++.++++ ++++-... .+| T Consensus 396 p~~~~~~~~~~~~~w~~p~~~~vDP~Ke~~A~~~~i~~G~~s~~~~~a~~-G~D~~~v~~q~a~e~~~~~~~Gl~~~~~p 474 (495) T protein:vir:10 396 PDYLQRRRYYNRVSWRTPRWEEVDPLKKHLADLGDVRAGFAPISDKQAER-GYDMEELFDMISDANQLIDEYDLRLDSDP 474 (495) T ss_pred CCchhhhHhhhccccccCCccccChHHHHHHHHHHHHcCCCCHHHHHHHc-CCCHHHHHHHHHHHHHHHHHcCCCCCCCC Confidence 111 1133445 444557999999999999999999999988876 766555433332 22222111 122 Q ss_pred CCCc-----cccCCCCCCCCC Q lcl|Aclame:pro 502 VTIS-----QRAQKRMFGDEE 517 (517) Q Consensus 502 ~~~~-----~~~~~~~~G~ee 517 (517) ...+ +.+.+..+.++| T Consensus 475 ~~~~~~~~~~~~~~~~~~~~e 495 (495) T protein:vir:10 475 RYVNGSGAEQKSVMEAALNNE 495 (495) T ss_pred CcCCCccCCCCCCCCCCCCCC Confidence 1111 111122222222 No 153 >protein:vir:4952 Length: 386 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:108 # MgeName: Sfi19 # Cross-refs: genbank:acc:NP_049928;genbank:gi:9632899;genbank:GeneID:1262075 Probab=98.17 E-value=3.3e-06 Score=50.65 Aligned_cols=371 Identities=8% Similarity=0.000 Sum_probs=153.6 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCcccc-ccccccChH--- Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQE-RDYMTLNLR--- 76 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~-~~~~~ln~~--- 76 (517) ||||+++++--. + . ....... ...+...+.+. +.. +.... +..+..+-- T Consensus 1 M~~f~~~~~~~~---------~-------~--~~~~~~~--~~~~~~~~~~~--~~~-----~~~v~~~~al~~~~v~~~ 53 (386) T protein:vir:49 1 MPIFNITNLATE---------S-------P--PINQESF--FDIADSDFLAS--LNS-----SEWVSAENALKNSDLFSI 53 (386) T ss_pred CchhhhhccCCC---------C-------c--ccchhhh--hhhhhcccccc--ccC-----CceechhhhhccHHHHHH Confidence 999966543210 0 0 0011000 11111111110 000 00000 001111111 Q ss_pred -HHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe-CCee- Q lcl|Aclame:pro 77 -KLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD-NGEI- 153 (517) Q Consensus 77 -~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d-~g~~- 153 (517) ..||+..|++ + +.+..... ...+.+--.......-++.++.+.+..|.+++.+..+ +|++ T Consensus 54 i~~ia~~ia~~----p--~~~~~~~~-----------~~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~ 116 (386) T protein:vir:49 54 ISQLSNDLATA----K--ITTSRKQL-----------QGIVDNPSNNANRFNFYQSIFAQMLLGGEAFAYRWRNDNGRDM 116 (386) T ss_pred HHHHHHHhhhC----c--eeeccchh-----------hhhhhccCCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEE Confidence 3444444432 2 22222110 0111111001112233344556667789888887776 4543 Q ss_pred EEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccc Q lcl|Aclame:pro 154 EFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLE 233 (517) Q Consensus 154 ~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~ 233 (517) .+..++|+.+-+...+.++.. .|+ ++ +. +. ..|..+.+ T Consensus 117 ~l~~i~~~~v~v~~~~~~~~~-----------------~y~------------------~~---~~--~~-~~~~~~~~- 154 (386) T protein:vir:49 117 KWEYLRPSQVSFNRLDNQNGL-----------------YYN------------------IT---FD--DP-HIAPKQHV- 154 (386) T ss_pred EEEEecCceeEEEEcCCCceE-----------------EEE------------------EE---Ec--Cc-cccceeEE- Confidence 577788888766433222211 110 00 00 00 00000000 Q ss_pred cccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHh-ccceeecchHHhcc Q lcl|Aclame:pro 234 ELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKM-GQRTVFVSDVMLRT 312 (517) Q Consensus 234 ~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~-~~~~i~v~~~~l~~ 312 (517) + +. -++||+.+.++ +..+|+|.+.-+...++....+.....+-++. +.++.++ +. T Consensus 155 --~---~~----------evih~~~~~~~----~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il-----~~ 210 (386) T protein:vir:49 155 --P---QN----------DILHFRLLSVD----GGLTSVSPLMALGREFNIQKASDKLTISALKNALNANGIL-----KI 210 (386) T ss_pred --c---cc----------cEEEecCCCCC----CccccccHHHHHHHHHHHHHHHHHHHHHHHHccCCccEEE-----Ee Confidence 0 00 14566543221 33579999988888887655444434444554 3454433 11 Q ss_pred CCCCccccc---CccCCc-ccceeeeecCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchH Q lcl|Aclame:pro 313 VPDESGMPP---PQVFDP-DVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTA 388 (517) Q Consensus 313 ~~~~~~~~~---~~~fd~-~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TA 388 (517) ......... ...|.. .......+-. +++..++.++....+.+..+..+...++|+...|++|..+|.+..+..++ T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~n~g~~~vl-~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~ 289 (386) T protein:vir:49 211 KGGGLLDFKTKVSRSRQAMKQMQGGPLVL-DDLEDFTPLEIKSNVAQLLSQADWTTGQFAKVYGIPESIVGGDGDQQSSL 289 (386) T ss_pred CCCCChHHHHHHHHHHHHhccCCCCceec-CCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCccchH Confidence 111111000 000000 0000000001 23334556666666677888888888999999999999998655444444 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCC Q lcl|Aclame:pro 389 TEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFI 468 (517) Q Consensus 389 tei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~ 468 (517) ..+.+.+.. .+.-....+...|... +. ..+.++.+..+-.|..+.+.....++.+|++ T Consensus 290 ~~~~~~~~~---~i~~~l~~i~~~~~~~------------l~-------~~~~~~~~~~~~~d~~~~~~~~~~l~~~g~~ 347 (386) T protein:vir:49 290 EMIYNIYFK---SVSRYLRPFVSEMSKK------------LS-------CEVDVDISPAVDPTGSNYISLINSMVKSGTL 347 (386) T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHH------------hc-------chhcccchhhhccCHHHHHHHHHHHHhCCCc Confidence 433322211 1111222222222111 10 1233444455566777788888889999999 Q ss_pred CHHHHHHhhC--CCCHHHHHHHHHHHHHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 469 PTVEAIQRIF--KVPKKTAEQWLEEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 469 S~~~~l~~~~--~~~eeea~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) ++-+++..+. |+...+ +.+.. .. +..+.+|...++| T Consensus 348 t~nE~r~~l~~~~~~~~~----~~~~~--~~-------~~~~~~gGd~~~~ 385 (386) T protein:vir:49 348 AQNQGLYILQQAEILPKE----LPDGK--NP-------NRTSLKGGEINEQ 385 (386) T ss_pred CHHHHHHHHhhCCCCCCc----Ccchh--cc-------CCCCCCCCCCCCC Confidence 9888765432 332221 11110 00 0111112111122 No 154 >protein:vir:107822 Length: 555 # NCBI annotation: hypothetical protein predicted by GeneMark # Family: family:all:481 # MgeID: mge:1673 # MgeName: BIP-1 # Cross-refs: genbank:acc:NP_996631;genbank:gi:45580765;genbank:GeneID:2767898 Probab=98.16 E-value=3.4e-06 Score=50.58 Aligned_cols=481 Identities=8% Similarity=0.044 Sum_probs=196.6 Q ss_pred hhcc-cchhhhccccCcCCHHHHHHHHHHHHHhcCCCccc-ccccccCc-c-ccccccccChHHHHHHHHhhhhcCCc-- Q lcl|Aclame:pro 18 LSGQ-TLKSINDHEKINIDPNELARIERNLRQYEGDYPQV-EYINSQGK-I-QERDYMTLNLRKLSADVLSGLVFNEQ-- 91 (517) Q Consensus 18 ~~~~-~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~-~~~~~~~~-~-~~~~~~~ln~~~~i~~~~A~ll~~e~-- 91 (517) |..+ ..+.+..+.+ .+..+-..-...|+.+|.=..|.. .+...++. . ....+..=+.+...++.+|+-|.+-. T Consensus 1 M~~~~~~~~l~~r~~-~l~~~R~~~e~~w~e~~~~~lP~~~~~~~~~~~~~~~~~~~~~dst~~~a~~~LAa~L~~~ltp 79 (555) T protein:vir:10 1 MAEQTERKLLLSRWG-QLRTERESWMSHWKEISDYLLPRAGRFFVQDRNRGEKRHNNILDNTGTRALRVLAAGMMAGMTS 79 (555) T ss_pred CCCcccHHHHHHHHH-HHHHHhhHHHHHHHHHHHHhCcccccccCCCCCcchhcccccccccHHHHHHHHHHHHHHhhcC Confidence 2211 1122221111 011111122345555543222211 01111111 1 11122333455555666665444331 Q ss_pred -----ceeEecCcccccc--cccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeC-CeeEEEEEcCCeE Q lcl|Aclame:pro 92 -----CEVYVSDAKDEEK--KDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDN-GEIEFSWALANAF 163 (517) Q Consensus 92 -----~~i~~~~~~~~~~--~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~-g~~~i~~v~a~~~ 163 (517) -.+.+.++...+. .....+...+.+...|..++|...+.++..+..++|.+.+-.-.|. +.+++..++..++ T Consensus 80 p~~~WF~l~~~d~~l~e~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~Lv~~G~a~l~~~~d~~~~~rf~~~pl~~~ 159 (555) T protein:vir:10 80 PARPWFRLTTSIPELDESAAVKAWLANVTRLMLMIFAKSNTYRALHSMYEELGAFGTASSIVLPDFDAVVYHHSLTAGEY 159 (555) T ss_pred CCCcccccccCcccccchHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCceEEEEecCCCceEEEEEeeccee Confidence 1234444332221 1111122334455788889999999999999999999887544553 5577888999998 Q ss_pred EEEEEcCCceEEEEEEEEEEEEecCCcEEEE--EEEEE---eecceeeccceEEEEEEEeecCC--ccc-cCcccccccc Q lcl|Aclame:pro 164 YPLRSNSNGISEGVMKSVTTKVIGNKTVYYT--LLEFH---EWEKTEEGESLYVITNELYKSDN--EGE-IGKRIPLEEL 235 (517) Q Consensus 164 ~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt--~lE~h---~~~~~~~~~~~y~I~n~ly~~~~--~~~-lG~~v~l~~~ 235 (517) +- ..|..+....+|. ++..+...-...|- .|--. .++. ...+-...|.|.+|-..+ ... -+.-.|..++ T Consensus 160 ~v-~~d~~G~vd~i~r-~~~~t~~ql~~~fg~~~l~~~~~~~~~~-~~~~~~v~v~~~V~pr~~~~~~~~~~~~~p~~s~ 236 (555) T protein:vir:10 160 AI-AADNQGRVNTLYR-EFQITVAQMVREFGKDKCSTTVQSLFDR-GALEQWVTVIHAIEPRADRDPSKRDDRNMAWKSV 236 (555) T ss_pred EE-eeCCCCCEEEEEE-EEeccHHHHHHhcCcccCCHHHHHHHhc-CCCCceEEEEEEEeeccCcCcCCCCccccceEEE Confidence 85 5666666655543 21111000000000 00000 0000 000011222233331111 000 0111122221 Q ss_pred c-C-CCCcc--eEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHH-HhccceeecchHHh Q lcl|Aclame:pro 236 Y-E-GMQEK--TYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEI-KMGQRTVFVSDVML 310 (517) Q Consensus 236 ~-~-~l~~~--~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~-~~~~~~i~v~~~~l 310 (517) + . ..... ....|+...||+.++ .+..+++.||+|--..+.+-++.|+..--+...-. ...++...||++.. T Consensus 237 ~~~~~~d~~~vl~esgy~e~P~i~~R----w~~~~ge~YGrgp~~~~lgD~k~L~~l~~~~l~~~~~~~~pp~~v~~~~~ 312 (555) T protein:vir:10 237 YFEPGADETRTLRESGYRSFRALCPR----WALVGGDIYGNSPAMEALGDVRQLQHEQLRKAQAIDYKSNPPLQLPVSAK 312 (555) T ss_pred EEEeccCCccccccCCcccCCceeee----eeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeccccc Confidence 1 0 00000 111233333444332 55566889999999999999999987544444444 45667777766652 Q ss_pred ccCCCCcccccCccCCcccceeeeecCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCc--cccccCCCccchH Q lcl|Aclame:pro 311 RTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSV--GTFSFDGRSMKTA 388 (517) Q Consensus 311 ~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~--~~~~~~~~~~~TA 388 (517) ....+. .+....|.. .+..++...-.+++......-.+.++.+.+.|.... +.. ..+...+....|| T Consensus 313 ~~~~~~---------~pgg~~~v~-~g~~~d~~~~~~~~~~d~~~~~~~i~~~~~rI~~af-~~dlf~~l~~~~~~~~TA 381 (555) T protein:vir:10 313 NQDIST---------VPGGLSYVD-AAAPNGGIRTAFEVNLDLSHLLADIVDVRERIKASF-YADLFLMLANGTNPQMTA 381 (555) T ss_pred ccccee---------ccccccccc-cCCCCcceecccccccchHHHHHHHHHHHHHHHHHh-hcchhhhccCCCCCcccH Confidence 211110 011111111 111111111123332233444444555554443222 111 1233334556899 Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhccCCCCC--CccceEEEeCCCccCCHHHH----HHHHHH Q lcl|Aclame:pro 389 TEIVSENDLTYRTRNDHVYE-VEQFIKGLVISVLELAKTYKLFGGEIP--SAEHIGVDFDDGVFQDRSAL----LRFYGQ 461 (517) Q Consensus 389 tei~a~~~~~~~t~~~~~~~-~~~al~~li~~il~~~~~~~~~~~~~~--~~~~v~i~f~d~i~~d~~~~----~~~~~~ 461 (517) |||....+...+...-.-.. -...|.-|+.-++.+..-.+.....+. ...+|+|++--.+...-... +.+..+ T Consensus 382 tEV~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~P~~l~~~~i~v~yis~La~aq~~~~~~~i~~~l~ 461 (555) T protein:vir:10 382 TEVAERHEEKLLMLGPVLERMHNEILDPLIELTFQRMVEANILPPPPQEMQGVDLNVEFVSMLAQAQRAIATNSVDRFVG 461 (555) T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhcCceeEEEeccHHHHHHHHHHHHHHHHHHH Confidence 99999998888887764333 345666666666665543322211111 13346666554433221110 111111 Q ss_pred HHh--cCC-------CCHHHH---HHhhCCCC------HHHHHHHHHH-HHHhccccCCCCCcc--ccCCCCCCCCC Q lcl|Aclame:pro 462 AKT--FGF-------IPTVEA---IQRIFKVP------KKTAEQWLEE-IRKDQIELDPVTISQ--RAQKRMFGDEE 517 (517) Q Consensus 462 ~~~--~G~-------~S~~~~---l~~~~~~~------eeea~~el~~-i~~E~~~~~~~~~~~--~~~~~~~G~ee 517 (517) .+. +++ +....+ +....|++ ++|+++..++ .++.+++......++ .....+++.+. T Consensus 462 ~i~~laq~~P~vld~id~d~~~~~~a~~~Gvp~~~irs~eev~~~r~qr~~~~q~~~~a~~~~q~~~~~~~~~~~~~ 538 (555) T protein:vir:10 462 NLGAVAGIKPEVLDKFDADRWADTYADMLGIDPELIVPGNQVALIRKQRADQQQAAQQAALLNQGADTAAKLGSVDT 538 (555) T ss_pred HHHHHhcCChhhhhcCCHHHHHHHHHHHhCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc Confidence 221 122 222322 33455653 3433332211 111111100000000 01112222333 No 155 >protein:vir:98506 Length: 555 # NCBI annotation: hypothetical protein predicted by GeneMark # Family: family:all:481 # MgeID: mge:1592 # MgeName: BMP-1 # Cross-refs: genbank:acc:NP_996583;genbank:gi:45569514;genbank:GeneID:2767834 Probab=98.16 E-value=3.4e-06 Score=50.58 Aligned_cols=481 Identities=8% Similarity=0.044 Sum_probs=196.6 Q ss_pred hhcc-cchhhhccccCcCCHHHHHHHHHHHHHhcCCCccc-ccccccCc-c-ccccccccChHHHHHHHHhhhhcCCc-- Q lcl|Aclame:pro 18 LSGQ-TLKSINDHEKINIDPNELARIERNLRQYEGDYPQV-EYINSQGK-I-QERDYMTLNLRKLSADVLSGLVFNEQ-- 91 (517) Q Consensus 18 ~~~~-~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~-~~~~~~~~-~-~~~~~~~ln~~~~i~~~~A~ll~~e~-- 91 (517) |..+ ..+.+..+.+ .+..+-..-...|+.+|.=..|.. .+...++. . ....+..=+.+...++.+|+-|.+-. T Consensus 1 M~~~~~~~~l~~r~~-~l~~~R~~~e~~w~e~~~~~lP~~~~~~~~~~~~~~~~~~~~~dst~~~a~~~LAa~L~~~ltp 79 (555) T protein:vir:98 1 MAEQTERKLLLSRWG-QLRTERESWMSHWKEISDYLLPRAGRFFVQDRNRGEKRHNNILDNTGTRALRVLAAGMMAGMTS 79 (555) T ss_pred CCCcccHHHHHHHHH-HHHHHhhHHHHHHHHHHHHhCcccccccCCCCCcchhcccccccccHHHHHHHHHHHHHHhhcC Confidence 2211 1122221111 011111122345555543222211 01111111 1 11122333455555666665444331 Q ss_pred -----ceeEecCcccccc--cccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeC-CeeEEEEEcCCeE Q lcl|Aclame:pro 92 -----CEVYVSDAKDEEK--KDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDN-GEIEFSWALANAF 163 (517) Q Consensus 92 -----~~i~~~~~~~~~~--~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~-g~~~i~~v~a~~~ 163 (517) -.+.+.++...+. .....+...+.+...|..++|...+.++..+..++|.+.+-.-.|. +.+++..++..++ T Consensus 80 p~~~WF~l~~~d~~l~e~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~Lv~~G~a~l~~~~d~~~~~rf~~~pl~~~ 159 (555) T protein:vir:98 80 PARPWFRLTTSIPELDESAAVKAWLANVTRLMLMIFAKSNTYRALHSMYEELGAFGTASSIVLPDFDAVVYHHSLTAGEY 159 (555) T ss_pred CCCcccccccCcccccchHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCceEEEEecCCCceEEEEEeeccee Confidence 1234444332221 1111122334455788889999999999999999999887544553 5577888999998 Q ss_pred EEEEEcCCceEEEEEEEEEEEEecCCcEEEE--EEEEE---eecceeeccceEEEEEEEeecCC--ccc-cCcccccccc Q lcl|Aclame:pro 164 YPLRSNSNGISEGVMKSVTTKVIGNKTVYYT--LLEFH---EWEKTEEGESLYVITNELYKSDN--EGE-IGKRIPLEEL 235 (517) Q Consensus 164 ~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt--~lE~h---~~~~~~~~~~~y~I~n~ly~~~~--~~~-lG~~v~l~~~ 235 (517) +- ..|..+....+|. ++..+...-...|- .|--. .++. ...+-...|.|.+|-..+ ... -+.-.|..++ T Consensus 160 ~v-~~d~~G~vd~i~r-~~~~t~~ql~~~fg~~~l~~~~~~~~~~-~~~~~~v~v~~~V~pr~~~~~~~~~~~~~p~~s~ 236 (555) T protein:vir:98 160 AI-AADNQGRVNTLYR-EFQITVAQMVREFGKDKCSTTVQSLFDR-GALEQWVTVIHAIEPRADRDPSKRDDRNMAWKSV 236 (555) T ss_pred EE-eeCCCCCEEEEEE-EEeccHHHHHHhcCcccCCHHHHHHHhc-CCCCceEEEEEEEeeccCcCcCCCCccccceEEE Confidence 85 5666666655543 21111000000000 00000 0000 000011222233331111 000 0111122221 Q ss_pred c-C-CCCcc--eEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHH-HhccceeecchHHh Q lcl|Aclame:pro 236 Y-E-GMQEK--TYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEI-KMGQRTVFVSDVML 310 (517) Q Consensus 236 ~-~-~l~~~--~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~-~~~~~~i~v~~~~l 310 (517) + . ..... ....|+...||+.++ .+..+++.||+|--..+.+-++.|+..--+...-. ...++...||++.. T Consensus 237 ~~~~~~d~~~vl~esgy~e~P~i~~R----w~~~~ge~YGrgp~~~~lgD~k~L~~l~~~~l~~~~~~~~pp~~v~~~~~ 312 (555) T protein:vir:98 237 YFEPGADETRTLRESGYRSFRALCPR----WALVGGDIYGNSPAMEALGDVRQLQHEQLRKAQAIDYKSNPPLQLPVSAK 312 (555) T ss_pred EEEeccCCccccccCCcccCCceeee----eeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeccccc Confidence 1 0 00000 111233333444332 55566889999999999999999987544444444 45667777766652 Q ss_pred ccCCCCcccccCccCCcccceeeeecCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCc--cccccCCCccchH Q lcl|Aclame:pro 311 RTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSV--GTFSFDGRSMKTA 388 (517) Q Consensus 311 ~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~--~~~~~~~~~~~TA 388 (517) ....+. .+....|.. .+..++...-.+++......-.+.++.+.+.|.... +.. ..+...+....|| T Consensus 313 ~~~~~~---------~pgg~~~v~-~g~~~d~~~~~~~~~~d~~~~~~~i~~~~~rI~~af-~~dlf~~l~~~~~~~~TA 381 (555) T protein:vir:98 313 NQDIST---------VPGGLSYVD-AAAPNGGIRTAFEVNLDLSHLLADIVDVRERIKASF-YADLFLMLANGTNPQMTA 381 (555) T ss_pred ccccee---------ccccccccc-cCCCCcceecccccccchHHHHHHHHHHHHHHHHHh-hcchhhhccCCCCCcccH Confidence 211110 011111111 111111111123332233444444555554443222 111 1233334556899 Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhccCCCCC--CccceEEEeCCCccCCHHHH----HHHHHH Q lcl|Aclame:pro 389 TEIVSENDLTYRTRNDHVYE-VEQFIKGLVISVLELAKTYKLFGGEIP--SAEHIGVDFDDGVFQDRSAL----LRFYGQ 461 (517) Q Consensus 389 tei~a~~~~~~~t~~~~~~~-~~~al~~li~~il~~~~~~~~~~~~~~--~~~~v~i~f~d~i~~d~~~~----~~~~~~ 461 (517) |||....+...+...-.-.. -...|.-|+.-++.+..-.+.....+. ...+|+|++--.+...-... +.+..+ T Consensus 382 tEV~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~P~~l~~~~i~v~yis~La~aq~~~~~~~i~~~l~ 461 (555) T protein:vir:98 382 TEVAERHEEKLLMLGPVLERMHNEILDPLIELTFQRMVEANILPPPPQEMQGVDLNVEFVSMLAQAQRAIATNSVDRFVG 461 (555) T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhcCceeEEEeccHHHHHHHHHHHHHHHHHHH Confidence 99999998888887764333 345666666666665543322211111 13346666554433221110 111111 Q ss_pred HHh--cCC-------CCHHHH---HHhhCCCC------HHHHHHHHHH-HHHhccccCCCCCcc--ccCCCCCCCCC Q lcl|Aclame:pro 462 AKT--FGF-------IPTVEA---IQRIFKVP------KKTAEQWLEE-IRKDQIELDPVTISQ--RAQKRMFGDEE 517 (517) Q Consensus 462 ~~~--~G~-------~S~~~~---l~~~~~~~------eeea~~el~~-i~~E~~~~~~~~~~~--~~~~~~~G~ee 517 (517) .+. +++ +....+ +....|++ ++|+++..++ .++.+++......++ .....+++.+. T Consensus 462 ~i~~laq~~P~vld~id~d~~~~~~a~~~Gvp~~~irs~eev~~~r~qr~~~~q~~~~a~~~~q~~~~~~~~~~~~~ 538 (555) T protein:vir:98 462 NLGAVAGIKPEVLDKFDADRWADTYADMLGIDPELIVPGNQVALIRKQRADQQQAAQQAALLNQGADTAAKLGSVDT 538 (555) T ss_pred HHHHHhcCChhhhhcCCHHHHHHHHHHHhCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc Confidence 221 122 222322 33455653 3433332211 111111100000000 01112222333 No 156 >protein:vir:107404 Length: 555 # NCBI annotation: Bbp21 # Family: family:all:481 # MgeID: mge:1537 # MgeName: BPP-1 # Cross-refs: genbank:acc:NP_958690;genbank:gi:41179382;genbank:GeneID:2717198 Probab=98.16 E-value=3.4e-06 Score=50.58 Aligned_cols=481 Identities=8% Similarity=0.044 Sum_probs=196.6 Q ss_pred hhcc-cchhhhccccCcCCHHHHHHHHHHHHHhcCCCccc-ccccccCc-c-ccccccccChHHHHHHHHhhhhcCCc-- Q lcl|Aclame:pro 18 LSGQ-TLKSINDHEKINIDPNELARIERNLRQYEGDYPQV-EYINSQGK-I-QERDYMTLNLRKLSADVLSGLVFNEQ-- 91 (517) Q Consensus 18 ~~~~-~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~-~~~~~~~~-~-~~~~~~~ln~~~~i~~~~A~ll~~e~-- 91 (517) |..+ ..+.+..+.+ .+..+-..-...|+.+|.=..|.. .+...++. . ....+..=+.+...++.+|+-|.+-. T Consensus 1 M~~~~~~~~l~~r~~-~l~~~R~~~e~~w~e~~~~~lP~~~~~~~~~~~~~~~~~~~~~dst~~~a~~~LAa~L~~~ltp 79 (555) T protein:vir:10 1 MAEQTERKLLLSRWG-QLRTERESWMSHWKEISDYLLPRAGRFFVQDRNRGEKRHNNILDNTGTRALRVLAAGMMAGMTS 79 (555) T ss_pred CCCcccHHHHHHHHH-HHHHHhhHHHHHHHHHHHHhCcccccccCCCCCcchhcccccccccHHHHHHHHHHHHHHhhcC Confidence 2211 1122221111 011111122345555543222211 01111111 1 11122333455555666665444331 Q ss_pred -----ceeEecCcccccc--cccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeC-CeeEEEEEcCCeE Q lcl|Aclame:pro 92 -----CEVYVSDAKDEEK--KDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDN-GEIEFSWALANAF 163 (517) Q Consensus 92 -----~~i~~~~~~~~~~--~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~-g~~~i~~v~a~~~ 163 (517) -.+.+.++...+. .....+...+.+...|..++|...+.++..+..++|.+.+-.-.|. +.+++..++..++ T Consensus 80 p~~~WF~l~~~d~~l~e~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~Lv~~G~a~l~~~~d~~~~~rf~~~pl~~~ 159 (555) T protein:vir:10 80 PARPWFRLTTSIPELDESAAVKAWLANVTRLMLMIFAKSNTYRALHSMYEELGAFGTASSIVLPDFDAVVYHHSLTAGEY 159 (555) T ss_pred CCCcccccccCcccccchHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCceEEEEecCCCceEEEEEeeccee Confidence 1234444332221 1111122334455788889999999999999999999887544553 5577888999998 Q ss_pred EEEEEcCCceEEEEEEEEEEEEecCCcEEEE--EEEEE---eecceeeccceEEEEEEEeecCC--ccc-cCcccccccc Q lcl|Aclame:pro 164 YPLRSNSNGISEGVMKSVTTKVIGNKTVYYT--LLEFH---EWEKTEEGESLYVITNELYKSDN--EGE-IGKRIPLEEL 235 (517) Q Consensus 164 ~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt--~lE~h---~~~~~~~~~~~y~I~n~ly~~~~--~~~-lG~~v~l~~~ 235 (517) +- ..|..+....+|. ++..+...-...|- .|--. .++. ...+-...|.|.+|-..+ ... -+.-.|..++ T Consensus 160 ~v-~~d~~G~vd~i~r-~~~~t~~ql~~~fg~~~l~~~~~~~~~~-~~~~~~v~v~~~V~pr~~~~~~~~~~~~~p~~s~ 236 (555) T protein:vir:10 160 AI-AADNQGRVNTLYR-EFQITVAQMVREFGKDKCSTTVQSLFDR-GALEQWVTVIHAIEPRADRDPSKRDDRNMAWKSV 236 (555) T ss_pred EE-eeCCCCCEEEEEE-EEeccHHHHHHhcCcccCCHHHHHHHhc-CCCCceEEEEEEEeeccCcCcCCCCccccceEEE Confidence 85 5666666655543 21111000000000 00000 0000 000011222233331111 000 0111122221 Q ss_pred c-C-CCCcc--eEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHH-HhccceeecchHHh Q lcl|Aclame:pro 236 Y-E-GMQEK--TYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEI-KMGQRTVFVSDVML 310 (517) Q Consensus 236 ~-~-~l~~~--~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~-~~~~~~i~v~~~~l 310 (517) + . ..... ....|+...||+.++ .+..+++.||+|--..+.+-++.|+..--+...-. ...++...||++.. T Consensus 237 ~~~~~~d~~~vl~esgy~e~P~i~~R----w~~~~ge~YGrgp~~~~lgD~k~L~~l~~~~l~~~~~~~~pp~~v~~~~~ 312 (555) T protein:vir:10 237 YFEPGADETRTLRESGYRSFRALCPR----WALVGGDIYGNSPAMEALGDVRQLQHEQLRKAQAIDYKSNPPLQLPVSAK 312 (555) T ss_pred EEEeccCCccccccCCcccCCceeee----eeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeccccc Confidence 1 0 00000 111233333444332 55566889999999999999999987544444444 45667777766652 Q ss_pred ccCCCCcccccCccCCcccceeeeecCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCc--cccccCCCccchH Q lcl|Aclame:pro 311 RTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSV--GTFSFDGRSMKTA 388 (517) Q Consensus 311 ~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~--~~~~~~~~~~~TA 388 (517) ....+. .+....|.. .+..++...-.+++......-.+.++.+.+.|.... +.. ..+...+....|| T Consensus 313 ~~~~~~---------~pgg~~~v~-~g~~~d~~~~~~~~~~d~~~~~~~i~~~~~rI~~af-~~dlf~~l~~~~~~~~TA 381 (555) T protein:vir:10 313 NQDIST---------VPGGLSYVD-AAAPNGGIRTAFEVNLDLSHLLADIVDVRERIKASF-YADLFLMLANGTNPQMTA 381 (555) T ss_pred ccccee---------ccccccccc-cCCCCcceecccccccchHHHHHHHHHHHHHHHHHh-hcchhhhccCCCCCcccH Confidence 211110 011111111 111111111123332233444444555554443222 111 1233334556899 Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhccCCCCC--CccceEEEeCCCccCCHHHH----HHHHHH Q lcl|Aclame:pro 389 TEIVSENDLTYRTRNDHVYE-VEQFIKGLVISVLELAKTYKLFGGEIP--SAEHIGVDFDDGVFQDRSAL----LRFYGQ 461 (517) Q Consensus 389 tei~a~~~~~~~t~~~~~~~-~~~al~~li~~il~~~~~~~~~~~~~~--~~~~v~i~f~d~i~~d~~~~----~~~~~~ 461 (517) |||....+...+...-.-.. -...|.-|+.-++.+..-.+.....+. ...+|+|++--.+...-... +.+..+ T Consensus 382 tEV~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~P~~l~~~~i~v~yis~La~aq~~~~~~~i~~~l~ 461 (555) T protein:vir:10 382 TEVAERHEEKLLMLGPVLERMHNEILDPLIELTFQRMVEANILPPPPQEMQGVDLNVEFVSMLAQAQRAIATNSVDRFVG 461 (555) T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhcCceeEEEeccHHHHHHHHHHHHHHHHHHH Confidence 99999998888887764333 345666666666665543322211111 13346666554433221110 111111 Q ss_pred HHh--cCC-------CCHHHH---HHhhCCCC------HHHHHHHHHH-HHHhccccCCCCCcc--ccCCCCCCCCC Q lcl|Aclame:pro 462 AKT--FGF-------IPTVEA---IQRIFKVP------KKTAEQWLEE-IRKDQIELDPVTISQ--RAQKRMFGDEE 517 (517) Q Consensus 462 ~~~--~G~-------~S~~~~---l~~~~~~~------eeea~~el~~-i~~E~~~~~~~~~~~--~~~~~~~G~ee 517 (517) .+. +++ +....+ +....|++ ++|+++..++ .++.+++......++ .....+++.+. T Consensus 462 ~i~~laq~~P~vld~id~d~~~~~~a~~~Gvp~~~irs~eev~~~r~qr~~~~q~~~~a~~~~q~~~~~~~~~~~~~ 538 (555) T protein:vir:10 462 NLGAVAGIKPEVLDKFDADRWADTYADMLGIDPELIVPGNQVALIRKQRADQQQAAQQAALLNQGADTAAKLGSVDT 538 (555) T ss_pred HHHHHhcCChhhhhcCCHHHHHHHHHHHhCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc Confidence 221 122 222322 33455653 3433332211 111111100000000 01112222333 No 157 >protein:vir:102727 Length: 945 # NCBI annotation: portal protein # Family: family:all:2446 # MgeID: mge:1610 # MgeName: YS40 # Cross-refs: genbank:acc:YP_874016;genbank:gi:118197623;genbank:GeneID:4495919 Probab=98.15 E-value=3.6e-06 Score=50.42 Aligned_cols=419 Identities=12% Similarity=0.083 Sum_probs=161.8 Q ss_pred Cc-hHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCc-ccccc-cccC----cccccccccc Q lcl|Aclame:pro 1 MK-VIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYP-QVEYI-NSQG----KIQERDYMTL 73 (517) Q Consensus 1 m~-~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~-~~~~~-~~~~----~~~~~~~~~l 73 (517) -+ +|=++-++|||-.-...+ +. ..++.+.+-+ -+.++.. .+.-. ..+. ....+..... T Consensus 60 ~~~~~~~~~~~~kk~~i~~pf---kk-------k~~~~~~d~f-----~~s~es~s~vtsls~pdaf~~vnVs~~~Alkn 124 (945) T protein:vir:10 60 YSIIIFRKNQVLKKEKIIVPY---NH-------QEPPFKFNLF-----EYSPESLMYLPSISDPDAFFLINLFRKYRFNN 124 (945) T ss_pred eeeeeehhhhHHHhhcccccc---cc-------cccchhhhhh-----hccCccceecccccCccceeeehhhhhhhhcc Confidence 11 111223333332211110 00 0011111100 1222210 00000 0000 0000000101 Q ss_pred C----hHHHHHHHHhhhhcCCcceeE--ecCccccccc--ccchhHHHHHHH---HHHhhhhHHHHH-HHHHHHHHhhCC Q lcl|Aclame:pro 74 N----LRKLSADVLSGLVFNEQCEVY--VSDAKDEEKK--DNSFKTAHEFIQ---HVFQHNKFIKNL-SDYLEPTFALGG 141 (517) Q Consensus 74 n----~~~~i~~~~A~ll~~e~~~i~--~~~~~~~~~~--~~~~~~~~~~l~---~~l~~n~f~~~~-~~~~~~a~~~G~ 141 (517) . --..||+..|++ |..+- ..+....... ......+...|. .......|+..+ +.++.+.+..|. T Consensus 125 saV~scI~~IA~sIAsL----PlklYrr~edG~~~~~~kk~~~~hpL~~LL~rPNp~mT~~eFwqsFl~~Lv~dLLL~GN 200 (945) T protein:vir:10 125 DSKLIKVSEIPKKLTSK----ELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDR 200 (945) T ss_pred HHHHHHHHHHHhhhccC----ceEEEEecccCcccccccccccchHHHHHHhCCCcccChhHHHHHHHHHHHHHHhhcCC Confidence 1 113455555544 33321 1111110000 001112222332 111112344434 345577888899 Q ss_pred EEEEEEEe-CCee-EEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEee Q lcl|Aclame:pro 142 LTVRPYVD-NGEI-EFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYK 219 (517) Q Consensus 142 ~~~k~~~d-~g~~-~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~ 219 (517) +++.+..+ +|++ .+..++|+++-|...++++.. . +|+ +..+ |...+ .|. T Consensus 201 AYieIiRd~~G~ii~L~pLdPs~Vti~~ddDG~~~----y------------~Yv----~~id------G~~~~---~v~ 251 (945) T protein:vir:10 201 GAIVKIRDEQGNLVAITPVDGTTIKPILSEDTGIV----V------------GYV----QEVD------GAIVA---HFD 251 (945) T ss_pred eEEEEEECCCCcEEEEEEECCcceEEEEcCCCcEE----E------------EEE----EecC------CceEE---Eec Confidence 88887775 4654 577788888777533332221 0 010 0000 00000 010 Q ss_pred cCCccccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHH-HHHHH- Q lcl|Aclame:pro 220 SDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQF-WWEIK- 297 (517) Q Consensus 220 ~~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~-~~e~~- 297 (517) +.++ +.+++++.++ ....++|+|.+.-+...+.... ....+ .+-|. T Consensus 252 --------------------a~Dv---------Ilhirn~s~D--G~~~GyGlSPIeaa~~aI~~al-Aaek~aar~Fsk 299 (945) T protein:vir:10 252 --------------------KRDV---------VLFRQNLTPD--VYMYGYSLPPIEILYKVILSDI-FIDKGNLDYYRK 299 (945) T ss_pred --------------------CCce---------EEEeccCCCC--cccccCCchHHHHHHHHHHHHH-HHHHHHHHHHHh Confidence 0010 1123333222 2234578888876666655433 33333 33343 Q ss_pred hc-cce--eecchHHhccCCCCcccccCc---cCCcc-cceeeeecC-----CCCCCcceEEecccChHHHHHHHHHHHH Q lcl|Aclame:pro 298 MG-QRT--VFVSDVMLRTVPDESGMPPPQ---VFDPD-VNVYKSIRM-----GTDEEFVKDVTHDIRTEQYKEAINQALR 365 (517) Q Consensus 298 ~~-~~~--i~v~~~~l~~~~~~~~~~~~~---~fd~~-~~~y~~~~~-----~~~~~~v~~~~~dir~e~~~~~l~~~l~ 365 (517) .| +++ +.++...... ....+..... .+... ...+.+.+. -+++..++.++....+.++.+..+...+ T Consensus 300 NGa~PsGILsvkg~~~~d-~k~~~~LseEq~erlKe~wee~~sG~NnG~piVLdeGmef~pLs~s~~DaQfLEsrkfs~e 378 (945) T protein:vir:10 300 GGSIPEGILAIEPPSYKE-GDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVAR 378 (945) T ss_pred CCCccceEEEecCccccc-cccccccCHHHHHHHHHHHHHHhCCcccccceecCCCceEEEccCChhHHHHHHHHHHHHH Confidence 33 333 2222111000 0000000000 00000 001111000 1222334555555567777888888888 Q ss_pred HHHHHhCCCccccccCCCccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEe Q lcl|Aclame:pro 366 TLEMELKLSVGTFSFDGRSMKTATEIVSENDLTY-RTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDF 444 (517) Q Consensus 366 ~i~~~~g~s~~~~~~~~~~~~TAtei~a~~~~~~-~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f 444 (517) +|+..-|++|..+|+.++...+..|- .....+ .++.-+...++.+|...+ .. ......+.++| T Consensus 379 eIArAFGVPP~lLG~~e~st~SNiEq--q~~~Fv~~tL~Pil~~IEqeLNrkL------------l~--~~eg~~i~fdF 442 (945) T protein:vir:10 379 KICAVYQVSPQDVGILEGSNKATAEV--MASLTKAKGLEPLMATISKGFDEVV------------SE--FRNEKDIKLWF 442 (945) T ss_pred HHHHHhCCCHHHcccCCCCCcchHHH--HHHHHHHHHHHHHHHHHHHHHHHhc------------cc--cccCceeEEEe Confidence 99999999999998765433222111 111121 233334444444443321 10 11234578889 Q ss_pred CCCccCCHHHHHHHHHHHHhcCCCCHHHHHHhhCCCCHHH-HHHHHHHH----------HHhccccCCCCCc---cccCC Q lcl|Aclame:pro 445 DDGVFQDRSALLRFYGQAKTFGFIPTVEAIQRIFKVPKKT-AEQWLEEI----------RKDQIELDPVTIS---QRAQK 510 (517) Q Consensus 445 ~d~i~~d~~~~~~~~~~~~~~G~~S~~~~l~~~~~~~eee-a~~el~~i----------~~E~~~~~~~~~~---~~~~~ 510 (517) +.....|..+.++...+++++|+|+.-+++++ .|+..-+ -+.-+-.. +..+....+.... ..+.+ T Consensus 443 d~ldl~D~ksraEal~kli~sGiLTiNEvRe~-lGLpPIeGGD~lli~~nn~~P~d~~~ka~~ga~p~q~aq~~~dqp~~ 521 (945) T protein:vir:10 443 KEDDLEKERDWWNIIQGQLNTGFRSINEARME-KGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQ 521 (945) T ss_pred cchhccCHHHHHHHHHHHHhCCCcCHHHHHHH-hCCCCCCCcceeeeccccccccccccccccCCCCcccccCCCCCCCC Confidence 88888899999999999999999999997654 3443210 11111000 0011001111110 01111 Q ss_pred CCCCCCC Q lcl|Aclame:pro 511 RMFGDEE 517 (517) Q Consensus 511 ~~~G~ee 517 (517) ..+|++| T Consensus 522 kGGe~dE 528 (945) T protein:vir:10 522 QGGGVDE 528 (945) T ss_pred CCCCCCC Confidence 1112222 No 158 >protein:vir:95378 Length: 406 # NCBI annotation: phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1567 # MgeName: GBSV1 # Cross-refs: genbank:acc:YP_764474;genbank:gi:115334628;genbank:GeneID:5179265 Probab=98.08 E-value=5.1e-06 Score=49.62 Aligned_cols=384 Identities=10% Similarity=0.033 Sum_probs=151.8 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhc-CCCcccccccccCccccccccccChHHHH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYE-GDYPQVEYINSQGKIQERDYMTLNLRKLS 79 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~-g~~~~~~~~~~~~~~~~~~~~~ln~~~~i 79 (517) ||||+++++..++-...- . ..+..++. |........ . .........-... T Consensus 1 Mg~f~~~~~~~~~~~~~~----------------~-------~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~v~~~ 51 (406) T protein:vir:95 1 MGLFDRWRRTKRKSKIRA----------------D-------TGYVGLFMSGEDVSFLVP-G-----YVRLSDNPEVRMA 51 (406) T ss_pred Ccchhhhccccccccccc----------------c-------chhhhhhccCcccCcccc-C-----HHHHhhcHHHHHH Confidence 999987665443211100 0 01111221 111100000 0 0001111122223 Q ss_pred HHHHhhhhcCCcceeEecCcccccccccchhHHHHHHH-HHHhhhhHHHHHHHHHHHHHhhCCE--EEEEEEe-CCee-E Q lcl|Aclame:pro 80 ADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQ-HVFQHNKFIKNLSDYLEPTFALGGL--TVRPYVD-NGEI-E 154 (517) Q Consensus 80 ~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~-~~l~~n~f~~~~~~~~~~a~~~G~~--~~k~~~d-~g~~-~ 154 (517) ++.+|+-+..=+..+.-.+..... .....+...|. +--.......-++.++.+.+..|.+ ++.+..+ .|.+ . T Consensus 52 i~~ia~~ia~~~~~~~~~~~~~~~---~~~~~~~~~l~~~PN~~~t~~~f~~~~~~~~ll~g~g~a~~~~~~~~~g~~~~ 128 (406) T protein:vir:95 52 VHKIADLISSMTIYLMQNTEDGDI---RIRNELSRKIDITPYSLMTRKSWMYNIVYTMLLDGEGNSVVFPKYTADGLIDE 128 (406) T ss_pred HHHHHHhhccCceEEEEecCCcce---eecchHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCceEEEEEEECCCCcEEE Confidence 333333332212222101110000 00111111111 1000112223334445555555644 3334444 3443 3 Q ss_pred EEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCccccccc Q lcl|Aclame:pro 155 FSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEE 234 (517) Q Consensus 155 i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~ 234 (517) +..++|+.+-++.. . ++ |.++ |. |..++- T Consensus 129 l~~i~~~~v~~~~~-~------------------~~--------------------~~~~---~~-------~~~~~~-- 157 (406) T protein:vir:95 129 LVPLTPSKVNFLDT-P------------------DG--------------------YQVL---YG-------GQTFNY-- 157 (406) T ss_pred EEEEcCceeEEEEc-C------------------Ce--------------------EEEE---ec-------cEEEch-- Confidence 45566655544211 1 00 1111 10 011110 Q ss_pred ccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhcc-ceeec--chHHhc Q lcl|Aclame:pro 235 LYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQ-RTVFV--SDVMLR 311 (517) Q Consensus 235 ~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~-~~i~v--~~~~l~ 311 (517) .+ ++||+.+. +. .+..+|+|.+.-+...++....+-.....-++.|- +.-++ |..+ T Consensus 158 ------~e----------vih~~~~~-~~--~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~l-- 216 (406) T protein:vir:95 158 ------DE----------VLHFIYNP-DP--ERPYIGRGYRVVLKDIADNLKQATATKKSFMSGKYMPSLIVKVDAAT-- 216 (406) T ss_pred ------hH----------EEEeeccC-CC--CCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCC-- Confidence 01 34554211 11 12236999988888877777655444444455443 33332 1111 Q ss_pred cCCCCcccccCccCCcccceeeeec-------CCCCCCcceEEe-cccChHHHHHHHHHHHHHHHHHhCCCccccccCCC Q lcl|Aclame:pro 312 TVPDESGMPPPQVFDPDVNVYKSIR-------MGTDEEFVKDVT-HDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGR 383 (517) Q Consensus 312 ~~~~~~~~~~~~~fd~~~~~y~~~~-------~~~~~~~v~~~~-~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~ 383 (517) .+.........|. ..|.... ...++..++.++ ......+..+..+...+.|+...|++|..+|.... T Consensus 217 --~~e~~~~~~~~~~---~~~~g~~n~~~~~v~~~~~~~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVp~~~lg~~~~ 291 (406) T protein:vir:95 217 --AELSSEEGRNAVF---KKYLQATEAGQPWIIPAELLEVEQVKPLSLKDIAINEAVELDKRTVAGMFGVPAFLLGIGEF 291 (406) T ss_pred --CHHHHHHHHHHHH---HHhccccccCCceeecCCCccccccccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCc Confidence 0000000000110 1121111 111222222222 23344566777777788999999999988864321 Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHH Q lcl|Aclame:pro 384 SMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAK 463 (517) Q Consensus 384 ~~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~ 463 (517) ++. . ....++.+|..++..|-...+. .++. .....+.+++++-+..|..+.++...+++ T Consensus 292 -----~~~--~----------~~~~~~~~l~P~~~~ie~~l~~-~l~~---~~~~~~~fd~~~l~~~d~~~~~~~~~~l~ 350 (406) T protein:vir:95 292 -----NRD--E----------YNNFINSTILPIAKGIEQELTR-KLLI---SPDLYFKFNPRSLYAYDLKELAEVGSNMY 350 (406) T ss_pred -----hHH--H----------HHHHHHHHHHHHHHHHHHHHHH-hcCC---CCCcEEEeechhhhcCCHHHHHHHHHHHH Confidence 111 0 1124455555555555443321 2222 23456778888877789999999999999 Q ss_pred hcCCCCHHHHHHhhCCCCHHH-HHHHHHHHHHhccccCCCCCcc--cc--CCCCCCCCC Q lcl|Aclame:pro 464 TFGFIPTVEAIQRIFKVPKKT-AEQWLEEIRKDQIELDPVTISQ--RA--QKRMFGDEE 517 (517) Q Consensus 464 ~~G~~S~~~~l~~~~~~~eee-a~~el~~i~~E~~~~~~~~~~~--~~--~~~~~G~ee 517 (517) .+|+|+..+++. ..|++.-+ .++-+.. ..-...+..+..+ .. ..+.+|.-| T Consensus 351 ~~G~~t~NE~R~-~~gl~p~~~gd~~~~~--~n~~~~~~~~~~~~~k~g~~~~~~~~~~ 406 (406) T protein:vir:95 351 VRGIMEGNEVRD-WLGLSPKEGLSELVIL--ENYIPLDKIGDQSKLKGGDNSGADGQTD 406 (406) T ss_pred hCCCcCHHHHHH-HhCCCCCCCcceeeec--cCccchhhcccccccCCCCCCCCCCCCC Confidence 999999999765 44664321 2111100 0000000000001 11 111112222 No 159 >protein:vir:105520 Length: 706 # NCBI annotation: phage portal protein # Family: family:all:487 # MgeID: mge:1463 # MgeName: phiSG1 # Cross-refs: genbank:acc:YP_516189;genbank:gi:89885992;genbank:GeneID:3964380 Probab=98.04 E-value=6.1e-06 Score=49.16 Aligned_cols=477 Identities=9% Similarity=-0.007 Sum_probs=214.0 Q ss_pred hHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhc--CCCcccc---cccccCccccccccccChHH Q lcl|Aclame:pro 3 VIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYE--GDYPQVE---YINSQGKIQERDYMTLNLRK 77 (517) Q Consensus 3 ~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~--g~~~~~~---~~~~~~~~~~~~~~~ln~~~ 77 (517) |=++-+.++++....+.... ++ ..+.+.+..+..+||. |+...-. .....+....+...+.|+-+ T Consensus 1 m~e~~~~~~~~~~~~~~~~~-----~~-----~~~~r~~~~~d~~f~~~~G~QW~~~~~~~l~~~~q~~grP~~~~N~i~ 70 (706) T protein:vir:10 1 MAESRQKQHERVMLRFDRAW-----SP-----QQVVREKCIEATRFVRVPGGQWEGATVAGTKLDEQFEKYPKFEINKVA 70 (706) T ss_pred CCcchHHHHHHHHHHHHHHH-----HH-----HHHHHHHHHHHHHhhccCCccCCHHHHHHHHhhhhhcCCCceEecchH Confidence 34455555554443332211 10 1233444455556764 5432111 11112223345567889888 Q ss_pred HHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe--C----- Q lcl|Aclame:pro 78 LSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD--N----- 150 (517) Q Consensus 78 ~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d--~----- 150 (517) .++.......-.-.+.+.+.-. ..+.+.+..+.++..+.-+.+.++......++..++...|-||+++..| + T Consensus 71 ~~v~~v~g~~~~nr~~~~v~P~-~~~~d~~~Ae~l~~l~~~~~~~~~~~~a~s~Af~d~i~~G~G~~ev~~d~~~~~d~~ 149 (706) T protein:vir:10 71 TELNRIISEYRNNRISVKFRPG-DNAASEELANKLNGLFRADYEETDGGEACDNAFDDAATGGFGCFRLTTSFVNEYDPM 149 (706) T ss_pred HHHHHHhhHHHhCCCceEEecC-CCCchHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcCcceEEeeeccccccCCC Confidence 8888888877777777776311 1111223456667777778888889999999999999999999999754 1 Q ss_pred ---CeeEEEEEc-C-CeEE--EEEEcCCceEEEEEEEEEEEE--------ecCC--------cEE----------EEEEE Q lcl|Aclame:pro 151 ---GEIEFSWAL-A-NAFY--PLRSNSNGISEGVMKSVTTKV--------IGNK--------TVY----------YTLLE 197 (517) Q Consensus 151 ---g~~~i~~v~-a-~~~~--P~~~~~~~~~~~a~~~~~~~~--------~~~~--------~~~----------yt~lE 197 (517) ++++|+.+. | +.|+ |-+... ....|-++++.... .++. ..+ .+..| T Consensus 150 ~~~~~i~i~~v~~p~~~v~~Dp~a~~~-D~sDar~~~~~~~~~~d~~~~~fp~~~~~~~~~~~~~~~~d~~~~d~~~~~e 228 (706) T protein:vir:10 150 DERQRIAVEPIYDPARSVWFDPDAKKY-DKSDALWAFCMYSVSLEKYQSEYDKAPTSLDRVGSVSWQYDWFTPDVVYIAK 228 (706) T ss_pred CCCccceeeeeccchhceecCchhccc-ChhhcceEeeeecCCHHHHHHhcCCChhhhhhhccccccccccCCCcceecc Confidence 245565542 3 3443 211111 12222222211110 0000 000 01112 Q ss_pred EEeecceeeccceEEEEEEEeecCCcc--------ccCcccc-ccc---------------c-cCCCCcceEEcC---C- Q lcl|Aclame:pro 198 FHEWEKTEEGESLYVITNELYKSDNEG--------EIGKRIP-LEE---------------L-YEGMQEKTYIQG---L- 248 (517) Q Consensus 198 ~h~~~~~~~~~~~y~I~n~ly~~~~~~--------~lG~~v~-l~~---------------~-~~~l~~~~~~~g---~- 248 (517) +++.... .++--.|+..... .+..... |.. + |..+.....+.+ + T Consensus 229 yy~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~g~~~l~~~~p~~ 301 (706) T protein:vir:10 229 YYEVRKE-------SVDVISYRQPLTQEIATYDSEQIADIQDELEQAGFEEIGRRSVKRRRIYVAVVDGDGFLEKPRRIP 301 (706) T ss_pred cccccce-------eEEEEEeeccccCCceeeccchhhhhHHHHhhCCchhhhhcccceeeEEEEeeccccccccCCCCC Confidence 1111000 0000011110000 0000000 000 0 000000001111 0 Q ss_pred -CcceEEEecCCccccc-cCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhcccee-ecchHHhccCCCCcccccCccC Q lcl|Aclame:pro 249 -SRPLFNYLKPSGFNNI-NPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRTV-FVSDVMLRTVPDESGMPPPQVF 325 (517) Q Consensus 249 -~~p~f~~~~~~~~N~~-~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i-~v~~~~l~~~~~~~~~~~~~~f 325 (517) ++.||++|- .... ...++...+.+.++++.++.+|...|.+.+.+-.+.... .++.+-+......... . T Consensus 302 ~~~~P~vP~~---g~r~~~d~~~~~~G~vr~~~d~Q~~~N~~~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~ 373 (706) T protein:vir:10 302 GEHIPLIPVY---GKRWFIDDVERVEGHIAKAMDPQRLYNLQVSMLADAAAQDPGQTPIVDMEQIRGLEQHWEG-----R 373 (706) T ss_pred CCccceEEEe---eccccccccCcccceeccchhhHHHHHHHHHHHHHHHHhcCCcccccchhHHHHHHHHhhh-----c Confidence 112233221 1111 123333445688999999999999999999884333322 2221111100000000 0 Q ss_pred Ccccceeeeec-C-CCCC------CcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHHHHHHHH Q lcl|Aclame:pro 326 DPDVNVYKSIR-M-GTDE------EFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVSENDL 397 (517) Q Consensus 326 d~~~~~y~~~~-~-~~~~------~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a~~~~ 397 (517) ..+...|.... . ..++ ..+..+++.--..++++.++.....|...+|++...+|-.+. .++-.|.++... T Consensus 374 ~~~~~~~l~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~vsGi~~~~lG~~sn--~SG~Ai~~rq~q 451 (706) T protein:vir:10 374 NRKRPAFLPLRTVTDKTGNVVAPANVAGYTQAPVLNQALAALLQQTSADIQEVTGSSQAMQQMPSN--VARETVNSLLNR 451 (706) T ss_pred ccccccchhcccccCCCCcccccccccccCCCcchHHHHHHHHHHHHHHHHHHhCCCHHHcCCccc--hHHHHHHHHHHH Confidence 00111111111 0 1111 112223332233467888888788888899999998885432 456667777666 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hccCCCC-----------------------------CCccceEEEe Q lcl|Aclame:pro 398 TYRTRNDHVYEVEQFIKGLVISVLELAKTY----KLFGGEI-----------------------------PSAEHIGVDF 444 (517) Q Consensus 398 ~~~t~~~~~~~~~~al~~li~~il~~~~~~----~~~~~~~-----------------------------~~~~~v~i~f 444 (517) ...........++.+++..-+.+|.+...+ ..+.... ...++|.|+= T Consensus 452 g~~~~~~~~Dnl~~~~~~~g~~lL~li~~~y~~~R~~RI~~ed~~~~~v~in~~~~d~~~G~~~~~nDi~~g~yDv~i~~ 531 (706) T protein:vir:10 452 SDMASFIYLDNMAKSLKRAGEIWLSMAREIYGSDREVRIVHEDGTDDIALMNAAVLDNQTGRVVALNDLSTGRYDVSVDV 531 (706) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEecCCCCccceeeccceeccccCceeeeecceeeeEEEEEec Confidence 666666777777778877777666654421 1100000 0123444443 Q ss_pred CCCccCCHHHHHHHHHHHHhcCC-CCHHH-----HHHhhCCCCHHHHHHHHHHHHHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 445 DDGVFQDRSALLRFYGQAKTFGF-IPTVE-----AIQRIFKVPKKTAEQWLEEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 445 ~d~i~~d~~~~~~~~~~~~~~G~-~S~~~-----~l~~~~~~~eeea~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) ..+.+.-+++.++.++++..++. ....+ .+.++.++. -+++.+++|+.-.....+. ......+. T Consensus 532 ~p~~~t~r~~~~~~m~el~~~~~p~~~~~~~l~~~~~~~~d~p--~~~e~~e~irk~~~~q~~~-------~~~~~~eq 601 (706) T protein:vir:10 532 GPSYSARRDATVNALTQLLQGMLPQDPMRPALMGIIIDNMEGE--GLDDFKAFNRRQLLTQGIV-------KPRNQQEQ 601 (706) T ss_pred ccCcchHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHhhcCcc--chHHHHHHHHHhhcccCCc-------cccchhHH Confidence 33334446667777777775432 21122 122333332 1344556665533222211 01001111 No 160 >protein:vir:103330 Length: 517 # NCBI annotation: head portal-like protein # Family: family:all:481 # MgeID: mge:1609 # MgeName: Era103 # Cross-refs: genbank:acc:YP_001039666;genbank:gi:125999995;genbank:GeneID:4818406 Probab=98.02 E-value=6.7e-06 Score=48.93 Aligned_cols=438 Identities=10% Similarity=0.037 Sum_probs=179.6 Q ss_pred CchH-----HHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccCh Q lcl|Aclame:pro 1 MKVI-----QRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNL 75 (517) Q Consensus 1 m~~~-----~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~ 75 (517) |-|. ++++.-+.++.. +-..-...|+.+|.=..|-+-.....+.. ..+.-=.. T Consensus 1 ~~~~~~~e~~~l~~r~~~Lk~--------------------~R~~~e~~w~e~~~~~lP~~~~~~~~~~~--~~~~~dst 58 (517) T protein:vir:10 1 MDMRFAGNKSKIPKLYEQLVG--------------------KRSPFLSRAENYSRFTLPYLMADVNDDLS--SQNAWQDD 58 (517) T ss_pred CcccccccHHHHHHHHHHHHH--------------------hhhHHHHHHHHHHHHhccccccCCCCCcc--ccccccch Confidence 5544 333333322111 01112345666554332321111111111 12222234 Q ss_pred HHHHHHHHhhhhcCCc--c-----eeEecCccccc--c-------cccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhh Q lcl|Aclame:pro 76 RKLSADVLSGLVFNEQ--C-----EVYVSDAKDEE--K-------KDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFAL 139 (517) Q Consensus 76 ~~~i~~~~A~ll~~e~--~-----~i~~~~~~~~~--~-------~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~ 139 (517) +...++.+|+-|.+-. | .+.+++....+ . .+...+...+.+...+..++|...+.++..+..++ T Consensus 59 g~~a~~~LAa~l~~~ltpp~~~WF~l~~~~~~l~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~ 138 (517) T protein:vir:10 59 GASATNFLSNKLSQVLFPAQRSFFRIDLTPEGIKQLDNEAMTQSTAQKLLSDVEKAAMLYGESLQFRPAVVEAFKHLIVT 138 (517) T ss_pred HHHHHHHHHHHHHHhhcCCCCccccccCCHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhH Confidence 4555555555444321 1 12332221111 0 11122223344556778889999999999999999 Q ss_pred CCEEEEEEEeCCeeEEEEEcCCeEEEEEEcCCceEEEEEEEEEEEE------ec---------------CCcEEEEEEEE Q lcl|Aclame:pro 140 GGLTVRPYVDNGEIEFSWALANAFYPLRSNSNGISEGVMKSVTTKV------IG---------------NKTVYYTLLEF 198 (517) Q Consensus 140 G~~~~k~~~d~g~~~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~------~~---------------~~~~~yt~lE~ 198 (517) |.+.+ |.+++...+..+|-.+++ +..|..+....+|....... .+ +.-.+|+++++ T Consensus 139 G~a~l--y~~~~~~~~~~~pl~~y~-v~~d~~G~v~~ivrr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~v~~~v~~ 215 (517) T protein:vir:10 139 GNVMM--YHPDKTSPIQAVPLHHYC-VRRDNNGTVLDIVFLQEKALETFEPSIRMAIQASRKGKQYKDKDNVKLYTHAKR 215 (517) T ss_pred CeEEE--EEeCCCCcEEEEEcCeEE-EeeCCCcCeEEEEeeeeccHHHHHHHhhhhcchhhhhhccCCcCceEEEEEEEE Confidence 98764 677776677888888866 45565554444433221100 00 01112332222 Q ss_pred EeecceeeccceEEEEEEEeecCCccccCcccccccccCCCCcceEEcC--CCcceEEEecCCccccccCCCCCCcchhh Q lcl|Aclame:pro 199 HEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQG--LSRPLFNYLKPSGFNNINPHSPLGLGITD 276 (517) Q Consensus 199 h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g--~~~p~f~~~~~~~~N~~~~~splG~S~~~ 276 (517) . .++.|.+ |.+-+...+ ++ ..+ +..-||+.+ -.+...++.||+|--. T Consensus 216 ~-------~~~~~~~----~~~~d~~~~-----~~-----------~s~y~~~e~P~~~~----Rw~~~~ge~YGrgp~~ 264 (517) T protein:vir:10 216 T-------KDGKYLI----RQSADDVPV-----GK-----------ESTVTEDKSPFLIL----TWKRSYGEDYGRGMAE 264 (517) T ss_pred e-------CCCceEE----EEEeCceee-----cc-----------ccccccccCCeeee----eeeecCCCCcccchHH Confidence 1 1122221 111111111 10 011 112233333 3555668899999999 Q ss_pred hhHHHHHHHHHHHHHHHH-HHHhccceeecchHHhccCCCCcccccCccCCcccceeeeecCCCCCCcceEEecc--cCh Q lcl|Aclame:pro 277 NSVSTLKKINDTYDQFWW-EIKMGQRTVFVSDVMLRTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHD--IRT 353 (517) Q Consensus 277 ~~~~lid~lD~~~s~~~~-e~~~~~~~i~v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~d--ir~ 353 (517) .+.+-++.|+..--.... .....++...||++.+.+..+- .......+. .+.. ..+..++.. ... T Consensus 265 ~~L~D~k~L~~l~~~~~~~~~~a~~~~~lv~~~~~~~~~~l--------~~~~~g~~~--~g~~--~~v~~~~~~~~~d~ 332 (517) T protein:vir:10 265 DHAGAFFVIQFLSEALARGMALMADVKYLVKPGSYTDINQF--------VEGGSGAVL--HGVE--GDIHIVQLGKYADY 332 (517) T ss_pred HhHHHHHHHHHHHHHHHHHHHHhccCCcccCcccccchhhc--------cCCCccccc--cCCc--ccceeeecccccch Confidence 999999999866444444 4467778888866553221110 011111111 1111 123333322 122 Q ss_pred HHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhccCC Q lcl|Aclame:pro 354 EQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVSENDLTYRTRNDHVYEV-EQFIKGLVISVLELAKTYKLFGG 432 (517) Q Consensus 354 e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a~~~~~~~t~~~~~~~~-~~al~~li~~il~~~~~~~~~~~ 432 (517) ....+.++.+.+.|....=+. .+..-+....|||||..+.+...+...-.-..+ ...|.-|+.-++.... .. T Consensus 333 ~~~~~~i~~~~~rI~~af~~~--~l~~~~~~rvTAtEV~~r~~E~~~~LGpv~~rl~~Ell~Pli~r~~~~l~--~~--- 405 (517) T protein:vir:10 333 TPIQAVLNDYRQRIGRVFMME--AMTRRDAERVTAYEIQRDAMLVEQSLGGVYSLFATTFQGPLARWFMNGIS--SI--- 405 (517) T ss_pred hHHHHHHHHHHHHHHHHHhhh--hhhccCCccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh--hh--- Confidence 333333443333332222011 122223345799999999988888776532222 2233334444333221 11 Q ss_pred CCCCccceEEEeCCCccC-CHHHHHHHHH---HHHh--cC-------CCCHHHHH---HhhCCCC------HHHHHHHHH Q lcl|Aclame:pro 433 EIPSAEHIGVDFDDGVFQ-DRSALLRFYG---QAKT--FG-------FIPTVEAI---QRIFKVP------KKTAEQWLE 490 (517) Q Consensus 433 ~~~~~~~v~i~f~d~i~~-d~~~~~~~~~---~~~~--~G-------~~S~~~~l---~~~~~~~------eeea~~el~ 490 (517) ...+. |.++.--++.. .+...++.+. +.++ +. .+....++ ....|++ ++|++++.+ T Consensus 406 l~~~~--v~~~~~s~la~l~r~~~~~~i~~~~~~i~~~a~~~~~~~~~id~d~~~~~~a~~~Gvp~~~irs~~ev~~~~~ 483 (517) T protein:vir:10 406 LTSKN--VSPTILTGIEALGRMAELDKLGTFNGYVSMTAQWPEPLQQAIKWPDFTDWVQGQISANFPFFKTQDELNAEAQ 483 (517) T ss_pred cCCCC--ccceeeccHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHhcCCHHHHHHHHHHHhCCChhhcCCHHHHHHHHH Confidence 11122 23222121110 0011111111 1121 11 12222222 2344543 355444433 Q ss_pred HHHHhccc---------cCCCCCccccCCCCCCCC Q lcl|Aclame:pro 491 EIRKDQIE---------LDPVTISQRAQKRMFGDE 516 (517) Q Consensus 491 ~i~~E~~~---------~~~~~~~~~~~~~~~G~e 516 (517) +..+.++. +++... ..++....|+. T Consensus 484 ~~~~~~~~~~~~~~ag~~~~~~~-~~~~~~~~~~~ 517 (517) T protein:vir:10 484 AQQEQEATKYAAEQAGKAIPDMV-KNGQINPQGGQ 517 (517) T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hCCCCCCCCCC Confidence 32222111 111111 11223333344 No 161 >protein:vir:100150 Length: 437 # NCBI annotation: gp3 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1639 # MgeName: phi1026b # Cross-refs: genbank:acc:NP_945033;genbank:gi:38707893;genbank:GeneID:2744197 Probab=98.01 E-value=7.1e-06 Score=48.81 Aligned_cols=406 Identities=14% Similarity=0.074 Sum_probs=166.3 Q ss_pred Cc-hHHHHHHHHHHH-HHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCcccc-ccccccC--- Q lcl|Aclame:pro 1 MK-VIQRIKNFFKRG-GYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQE-RDYMTLN--- 74 (517) Q Consensus 1 m~-~~~~ik~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~-~~~~~ln--- 74 (517) |+ -++++.+-++.. +.+++. .+.+++. .-|..| .|...+. +.... ...+... T Consensus 1 ~~~~~~~~~~~~~~~~~~~~g~----------~~s~~~~-----~~~~~~-~~~~~~~------g~~v~~~~al~~~~v~ 58 (437) T protein:vir:10 1 MKQGKQRALGRIKSSFLKWLGV----------PISLTDG-----SFWSAW-GGMGSSS------GETVTADSALQLSAVW 58 (437) T ss_pred CCcchhhhhhhhHHhhhhhcCC----------cccCCch-----hHHHhh-cccccCC------CceechHhhhccHHHH Confidence 54 222222222211 111111 1111111 113223 2221110 00000 0011111 Q ss_pred -hHHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHH-HHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeCCe Q lcl|Aclame:pro 75 -LRKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQH-VFQHNKFIKNLSDYLEPTFALGGLTVRPYVDNGE 152 (517) Q Consensus 75 -~~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~-~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~g~ 152 (517) --..||+..|+| |..+.-.+.+.... ......+...|.. --.......-.+.++.+.+-.|.+++.+..+.|+ T Consensus 59 ~ci~~Ia~~ia~l----p~~~~~~~~~g~~~-~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~g~ 133 (437) T protein:vir:10 59 SCVRLIAETIATL----PLNLYQTKPDGTRV-LAKQHRLYTVIHSQPNAENTAAEFWEVIVASMLLWGNGYARKLRSAGV 133 (437) T ss_pred HHHHHHHHHHhhC----ceeEEEEcCCCcee-eccccHHHHHhhccCCcCCCHHHHHHHHHHHHhhcCCeEEEEEecCCc Confidence 115666666654 22221111110000 0011112222211 0001122233444566667789888887777666 Q ss_pred e-EEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccc Q lcl|Aclame:pro 153 I-EFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIP 231 (517) Q Consensus 153 ~-~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~ 231 (517) + .+..++|+.+-+....+ + ..+|+ + +. .+ |.... T Consensus 134 ~~~L~~l~p~~v~i~~~~~-g-----------------~~~y~---~-------------------~~-~~----g~~~~ 168 (437) T protein:vir:10 134 LIGLELMLPQRTTVKRLTS-G-----------------ALQYT---Y-------------------RN-VD----GTVST 168 (437) T ss_pred EEEEEEEcCcceEEEECCC-C-----------------eEEEE---E-------------------Ee-cC----ceEEE Confidence 4 35667777665532111 1 11111 0 00 00 11110 Q ss_pred cccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhc-cceeecchHHh Q lcl|Aclame:pro 232 LEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMG-QRTVFVSDVML 310 (517) Q Consensus 232 l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~-~~~i~v~~~~l 310 (517) + + +.+ +.||+.+.. +..+|+|.+.-+...+......-....+-|+.| ++.-++.-. T Consensus 169 ~---~---~~d----------Iih~r~~~~-----d~~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~-- 225 (437) T protein:vir:10 169 L---A---EDD----------VFHVRGFSL-----DGLMGLTPIQYAREVLGNSTAANKTSASVFRNGLRPSGVLSTD-- 225 (437) T ss_pred E---c---ccc----------EEEecCcCC-----CCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcC-- Confidence 0 0 001 345654311 346799988877777765544443344445544 444443110 Q ss_pred ccCCCCcccccCccCCcccceeeeec------CCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCc Q lcl|Aclame:pro 311 RTVPDESGMPPPQVFDPDVNVYKSIR------MGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRS 384 (517) Q Consensus 311 ~~~~~~~~~~~~~~fd~~~~~y~~~~------~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~ 384 (517) ....+.........|. ..|.+.. .=+++-.++.++......++.+..+...+.|+...|++|..+|+...+ T Consensus 226 ~~l~~e~~~~~~~~~~---~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~ 302 (437) T protein:vir:10 226 QILQKEKRAEIRTDLA---EQFGGAMQAGKTMVLEAGMKYQAITMNPGDVQLLETRAFNIEEICRWYRVPPFMVGHSEKS 302 (437) T ss_pred CCCCHHHHHHHHHHHH---HHhcCccccCcceeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCc Confidence 0000000000001110 0111111 002233355555555566778888788889999999999999876544 Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHh Q lcl|Aclame:pro 385 MKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKT 464 (517) Q Consensus 385 ~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~ 464 (517) ..+.+.+..... ..++.+|.-++..|....+. .++.........+.++++.-+..|..+.++....++. T Consensus 303 t~~~sn~e~~~~----------~f~~~tl~P~~~~ie~~l~~-kll~~~e~~~~~~~fd~~~ll~~d~~~r~~~~~~~~~ 371 (437) T protein:vir:10 303 TSWGTGIEQQTL----------GFLTFTLRPWLTRIEQAARR-SLLRPGERDQFYAEFSVEGLLRADSAGRAAFYSTMTQ 371 (437) T ss_pred ccccchHHHHHH----------HHHHHHHHHHHHHHHHHHHh-hccCccccCceEEEEechhhhccCHHHHHHHHHHHHh Confidence 332222322221 22233333333332221111 1222222223446677777677889999999999999 Q ss_pred cCCCCHHHHHHhhCCCCH---HHH----HHHHHHHHHhccccCCCCCccccC-------CCCCCCCC Q lcl|Aclame:pro 465 FGFIPTVEAIQRIFKVPK---KTA----EQWLEEIRKDQIELDPVTISQRAQ-------KRMFGDEE 517 (517) Q Consensus 465 ~G~~S~~~~l~~~~~~~e---eea----~~el~~i~~E~~~~~~~~~~~~~~-------~~~~G~ee 517 (517) +|+|+.-+++..+ |+.. ... ..-+..+.... +..+...++... +...|+|| T Consensus 372 ~G~~T~NE~R~~~-gl~pi~gg~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e 436 (437) T protein:vir:10 372 NGLMTRDECRAKE-NLPPMGGNAAVLTVQSALLPIDKLG-EHTTATAAQDALKAWLYQEEKTRATQE 436 (437) T ss_pred CCCcCHHHHHHHh-CCCCCCCCcceEeecCcccchhhcc-CcCCCcchhccccccCCCCCCCCcccc Confidence 9999999976543 4422 110 00111122111 111111122121 22334555 No 162 >protein:vir:345 Length: 663 # NCBI annotation: virion structural protein # Family: family:all:3199 # MgeID: mge:9 # MgeName: Mx8 # Cross-refs: genbank:acc:NP_203459;genbank:gi:15320615;genbank:GeneID:921720 Probab=97.97 E-value=8.6e-06 Score=48.35 Aligned_cols=458 Identities=10% Similarity=0.020 Sum_probs=198.1 Q ss_pred Cch----------HHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccc Q lcl|Aclame:pro 1 MKV----------IQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDY 70 (517) Q Consensus 1 m~~----------~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~ 70 (517) |+= =..-|+|.+++.. ..+- -.++-.++...++.|.|.. ++.++...+-+. T Consensus 1 m~~~~~~~~~~tpe~la~~W~~~I~~------------a~~~--~~~~h~r~~~~~k~y~~~~-----~~~~~~~~r~nl 61 (663) T protein:vir:34 1 MNESQPTDFADTPQGWAQRWQEEMSA------------AREP--LEKWHTQGKEIVKRYRDER-----DSAHDAETRWNL 61 (663) T ss_pred CCccccccchhcchhHHHHHHHHHHH------------HHhc--cchHHHHHHHHHHHhhccc-----cCCCccccccch Confidence 111 0012344433222 1110 1245556777777887642 222222222344 Q ss_pred cccChHHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHH------hhhhHHHHHHHHHHHHHhhCCEEE Q lcl|Aclame:pro 71 MTLNLRKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVF------QHNKFIKNLSDYLEPTFALGGLTV 144 (517) Q Consensus 71 ~~ln~~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l------~~n~f~~~~~~~~~~a~~~G~~~~ 144 (517) +|-|+--...+- .+..|.++|.-.-.+ .++.......+.+.+.+ +++.|...++..+.+++-.|-|.+ T Consensus 62 ~~sni~~i~P~i-----Yar~P~p~V~~rf~d-~d~~~~r~ase~leR~~~~~~~~D~~~l~~~~~~~v~d~ll~~rG~~ 135 (663) T protein:vir:34 62 FSTNIQTQMASL-----YGQTPKVSVSRRFAD-ADDDVARVASELLERLLNTDIEKDSDTFQQALEYALQDRLLPGFGLC 135 (663) T ss_pred hhhhHHHHhhhh-----hcCCCcceeeecccC-cccchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhccccceE Confidence 555554444443 345677777432111 11233455667777766 667799999999999999998888 Q ss_pred EEEEeC------------------C--------------eeEEEEEcCCeEEE-EEEcCCceEEEEEEEEEEEE-----e Q lcl|Aclame:pro 145 RPYVDN------------------G--------------EIEFSWALANAFYP-LRSNSNGISEGVMKSVTTKV-----I 186 (517) Q Consensus 145 k~~~d~------------------g--------------~~~i~~v~a~~~~P-~~~~~~~~~~~a~~~~~~~~-----~ 186 (517) ++.|.. + ++.|++|+-..|.- -...+..+.-.++..+.+.. . T Consensus 136 ~v~Ye~~~~~~~~~~~~~D~~~~~~~a~~~~~~e~~a~E~v~id~v~~~dfl~~pAr~W~ev~wva~r~~mtk~e~~~rf 215 (663) T protein:vir:34 136 RIRYEVEWEEVAGVDAILDEATGAELAAAVPPTQRKAYECVETDYLHWQDVLWSPARVWHEVRWLAFRNLLDMREFNARF 215 (663) T ss_pred EEEeecccchhccccccCCCccccchhcccccchhhcccceeeeeechhhcccchhhccccccceeeeccCCHHHHHHhh Confidence 888721 0 34455555444421 01111111111111110000 0 Q ss_pred cCCcEEEEEEEEEeecceeecc-----------ceEEE----EEEEee-cCCccccCcccccccccCCCCcceEEcCCCc Q lcl|Aclame:pro 187 GNKTVYYTLLEFHEWEKTEEGE-----------SLYVI----TNELYK-SDNEGEIGKRIPLEELYEGMQEKTYIQGLSR 250 (517) Q Consensus 187 ~~~~~~yt~lE~h~~~~~~~~~-----------~~y~I----~n~ly~-~~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~ 250 (517) +.+...+...+.-..+....+. +-+-| +|++|- .+ |..+.|..- ++..-..| T Consensus 216 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~VwEIWdK~~~~V~w~~e-----g~~~~L~~~----~p~lgl~~--- 283 (663) T protein:vir:34 216 DADGSRNLWASVPKVGKPKDGKDGQSCHPWDRAEVWEIWDKGGRKVDWYVE-----GYSAVLDTQ----PDPLGLES--- 283 (663) T ss_pred cCChhhhhhhhccCcCCccccCCCCCcchhcCcceeEEEecCCcEEEEEEc-----CcceecccC----CCCCCCCC--- Confidence 0000000000000000000000 00000 011110 00 111222211 11111222 Q ss_pred ceEEEecCCcc--ccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeecchHHhccCCCCcccccCccC-Cc Q lcl|Aclame:pro 251 PLFNYLKPSGF--NNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRTVFVSDVMLRTVPDESGMPPPQVF-DP 327 (517) Q Consensus 251 p~f~~~~~~~~--N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~l~~~~~~~~~~~~~~f-d~ 327 (517) |||+|.| -+...+|-..+++|.-.+++++++|..-.++.--.+.-+++-+.|.+.-.. .+..+ +. T Consensus 284 ----ffPcPrpl~~~~~~ds~ipvpd~~~y~~~~~E~n~~t~Rin~l~d~ikv~gvy~~~~g~~--------i~~~l~~a 351 (663) T protein:vir:34 284 ----FFPCPKPLLANWTTDKVVPRPDFVLAQDLYKEIDLVSTRITLLERAIRVVGVYDKSSGLT--------IGRLLSEA 351 (663) T ss_pred ----CCCCcccccceecCCCeecCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhceeeccccchh--------HHHHHHHh Confidence 3443332 112234667899999999999999988888866667777777776433100 00000 00 Q ss_pred ccceeeeec-----CCCCC--CcceEEecccChHHHHHHH----HHHHHHHHHHhCCCccccccC-CCccchHHHHHHHH Q lcl|Aclame:pro 328 DVNVYKSIR-----MGTDE--EFVKDVTHDIRTEQYKEAI----NQALRTLEMELKLSVGTFSFD-GRSMKTATEIVSEN 395 (517) Q Consensus 328 ~~~~y~~~~-----~~~~~--~~v~~~~~dir~e~~~~~l----~~~l~~i~~~~g~s~~~~~~~-~~~~~TAtei~a~~ 395 (517) -++.+..+. ++.++ ..|..+..+- +.+-+..| ..+...++..+|++-- .-. ....+|||+..-+. T Consensus 352 ~~n~lvpV~~~~~~~~~gg~~k~I~~~pi~~-~~~aI~~l~~~r~qir~d~~qITGiaDi--~Rga~~a~ETatAQ~IKs 428 (663) T protein:vir:34 352 AQNDLIPVENWLTFADKGGLRGVVDWFPLEP-VVAALTSLRDYRRELVDALHQVTGMADI--MRGASDPRETAMAQGVKA 428 (663) T ss_pred hCCCceecchhhhhhhhcCccchhhcccchh-HHHHHHHHHHHHHHHHHHHHHHHhHHHH--hhcccCcchhhHHHHHHH Confidence 111122222 11222 1233332221 11111111 2333456777888722 222 22345666655555 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hhccCCCCC-----------------CccceEEEeCCCccCC Q lcl|Aclame:pro 396 DLTYRTRNDHVYEVEQFIKGLVISVLELAKT-------YKLFGGEIP-----------------SAEHIGVDFDDGVFQD 451 (517) Q Consensus 396 ~~~~~t~~~~~~~~~~al~~li~~il~~~~~-------~~~~~~~~~-----------------~~~~v~i~f~d~i~~d 451 (517) +-.-.++..++..++....++++..-++... ....+...+ ..+.|.|.=+-.+..| T Consensus 429 q~gS~RIqe~qdevqR~arDi~ql~AEIl~~~~~~etl~~m~~~elp~~~ei~~~~~~L~n~~~r~~~ldIe~dsT~~~D 508 (663) T protein:vir:34 429 KFGSIRLQRLQDEVARFASDIQRLKAEVIAEHYDVASILAQANAEFTFDKELAPKAAELIKSRFSMYRVEVKPEAVSLQD 508 (663) T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCcccchhHHHHHHhcCCCcceeeeeccCCCCcCC Confidence 6677888999999999999999887765431 111122111 3455677777888899 Q ss_pred HHHHHHHHHHHHhcCCCCHHHHH--------------HhhC-----CCCH-HHHHHHHHHHH--HhccccCCCCCccccC Q lcl|Aclame:pro 452 RSALLRFYGQAKTFGFIPTVEAI--------------QRIF-----KVPK-KTAEQWLEEIR--KDQIELDPVTISQRAQ 509 (517) Q Consensus 452 ~~~~~~~~~~~~~~G~~S~~~~l--------------~~~~-----~~~e-eea~~el~~i~--~E~~~~~~~~~~~~~~ 509 (517) ..++.+.++..+++ +-+--+.+ ..+. ++.. .+++.-++++. .++++..+.. T Consensus 509 ~~~eK~~~~E~l~~-i~~~~qq~~pl~~q~p~~~p~l~Ellk~~~~~f~~~~qie~ai~~~~~~~e~aa~~~~~------ 581 (663) T protein:vir:34 509 FAALRNEKMEVLSG-IASFMQGVAPLAQQVPGSAPFLLQMLKWSVSGLRGSSTIEGVLDKAIAAAEEAQKQAAQ------ 581 (663) T ss_pred hHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCChhhhHHHHHHHHHhhhHHHhhccCC------ Confidence 87777666654432 11111111 1100 1111 11111122221 1222221111 Q ss_pred CCCCCCCC Q lcl|Aclame:pro 510 KRMFGDEE 517 (517) Q Consensus 510 ~~~~G~ee 517 (517) ......-+ T Consensus 582 ~~pa~~~~ 589 (663) T protein:vir:34 582 QSPAPQQP 589 (663) T ss_pred CCcccchh Confidence 00001111 No 163 >protein:vir:102118 Length: 409 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1641 # MgeName: phiSM101 # Cross-refs: genbank:acc:YP_699943;genbank:gi:110804051;genbank:GeneID:4206661 Probab=97.96 E-value=9.3e-06 Score=48.18 Aligned_cols=389 Identities=14% Similarity=0.100 Sum_probs=168.8 Q ss_pred HhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccChH----HHHHHHHhhhhcCCcc Q lcl|Aclame:pro 17 ALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLR----KLSADVLSGLVFNEQC 92 (517) Q Consensus 17 ~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~----~~i~~~~A~ll~~e~~ 92 (517) |++-+.+++-+ ..+.+++. .+-.|..+.+...+ ... +..+....- ..||+..|++ +. T Consensus 1 m~f~~~~~~~~--~~~~~~~~------~~~~~~g~~~~~~~-v~~------~~al~~~~v~~~i~~ia~~ia~l----p~ 61 (409) T protein:vir:10 1 MLFRKGFKNQS--QEISIDDK------KILEWLGINPSETY-VNG------KSCLKQATVFGCIRILSDNISKL----PI 61 (409) T ss_pred CcccccccCcC--CCCCCChH------HHHHHhcCCcCcce-ech------hhhhccHHHHHHHHHHHHhhhhC----ce Confidence 22222222211 11222321 12223333322211 000 011111111 4566666654 22 Q ss_pred eeEecCcccccccccchhHHHHHHHH-HHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeC-Cee-EEEEEcCCeEEEEEEc Q lcl|Aclame:pro 93 EVYVSDAKDEEKKDNSFKTAHEFIQH-VFQHNKFIKNLSDYLEPTFALGGLTVRPYVDN-GEI-EFSWALANAFYPLRSN 169 (517) Q Consensus 93 ~i~~~~~~~~~~~~~~~~~~~~~l~~-~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~-g~~-~i~~v~a~~~~P~~~~ 169 (517) .+.-..... + ......+...|.. --.......-++..+.+.+..|.+++.+..+. |++ .+..++|+.+-++. + T Consensus 62 ~~~~~~~~~-~--~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~V~v~~-~ 137 (409) T protein:vir:10 62 KIYQKKDGI-K--RVPDHYLEYLLKLRPNPYMSSSDFWKCIEVQRNIYGNAYVALDFKKNGEIKGLYPLKSDGMKIFV-D 137 (409) T ss_pred EEEEecCCe-e--eccCchHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEEcCCceEEEE-c Confidence 221111100 0 1111222222221 00001122333455666777898888887763 443 56778888776542 2 Q ss_pred CCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccccCCCCcceEEcCCC Q lcl|Aclame:pro 170 SNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLS 249 (517) Q Consensus 170 ~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~~ 249 (517) .++.... .....| + |... .|....+ + + T Consensus 138 ~~~~~~~-----------~~~~~y------------------~-----~~~~----~g~~~~~---~---~--------- 164 (409) T protein:vir:10 138 DTGLLNS-----------ENNVWY------------------L-----YTDD----LGQRHKF---M---S--------- 164 (409) T ss_pred CCccccc-----------cceEEE------------------E-----EEeC----CceeEEe---c---c--------- Confidence 2221100 000011 0 1000 0111110 0 0 Q ss_pred cceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhc-cceeecchHHhccCCCC---cccccCccC Q lcl|Aclame:pro 250 RPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMG-QRTVFVSDVMLRTVPDE---SGMPPPQVF 325 (517) Q Consensus 250 ~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~-~~~i~v~~~~l~~~~~~---~~~~~~~~f 325 (517) --++||+.+.+ +..+|+|.+.-+...++.....-....+-|+.| ++.-++ +....- ........| T Consensus 165 -~evih~r~~~~-----d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil-----~~~~~l~~e~~~~~~~~~ 233 (409) T protein:vir:10 165 -DEILHFKGLTA-----DGLAGLSVIELLNHLIENGKSSETYLNNFFKNGLQVKGLV-----QYAGDLNPEAEEVFKENF 233 (409) T ss_pred -ccEEEecCcCC-----CCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEE-----EcCCCCCHHHHHHHHHHH Confidence 01355654322 235799998888877776554444444445654 344333 111110 001111111 Q ss_pred Ccccceeeeec------CCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCcc-chHHHHHHHHHHH Q lcl|Aclame:pro 326 DPDVNVYKSIR------MGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSM-KTATEIVSENDLT 398 (517) Q Consensus 326 d~~~~~y~~~~------~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~-~TAtei~a~~~~~ 398 (517) .. .|.+.. .-+++..++.++......+..+..+...++|+...|++|..++...++. .++.+. T Consensus 234 ~~---~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~e~~------- 303 (409) T protein:vir:10 234 ER---MSSGLKNAHRIAMLPIGYKFEPISQKLVDAQFLENSQLTIRQIASVFGVKMHQLNDLDRATHSNITEQ------- 303 (409) T ss_pred HH---HhccccccCCceecCCCceEEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCCccccHHHH------- Confidence 11 121111 0123334555666656677788888888999999999999998655432 222221 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-CCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCCHHHHHHhh Q lcl|Aclame:pro 399 YRTRNDHVYEVEQFIKGLVISVLELAKTYKLFG-GEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTVEAIQRI 477 (517) Q Consensus 399 ~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~-~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~~~l~~~ 477 (517) ....++.+|.-++..|....+. .++. ......+.+.+++++-...|..+.++...+++.+|+|+.-+++. . T Consensus 304 ------~~~f~~~~l~P~~~~ie~~ln~-kL~~~~~~~~~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~-~ 375 (409) T protein:vir:10 304 ------NREFYIDTLQSILNMYELEINY-KLFLISEIKNGFYSKFNVDTILRADIKTRYESYKEAIQNGFKTPNEIRE-L 375 (409) T ss_pred ------HHHHHHHHHHHHHHHHHHHHHH-hhcCchhccCCcEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHH-H Confidence 1223334444444444332221 1221 11223455777777777789999999999999999999999765 4 Q ss_pred CCCCHHH-HHHHHHHHHHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 478 FKVPKKT-AEQWLEEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 478 ~~~~eee-a~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) .|+..-+ .++-+. +....|. +........|||+ T Consensus 376 lgl~p~~ggD~~~~-----~~n~~~~--~~~~~~~~kgGe~ 409 (409) T protein:vir:10 376 EEDEPLEGGDVLLI-----NGNMIPV--KMAGEQYSKGGEK 409 (409) T ss_pred hCCCCCCCcCeeee-----ccCccch--hhccccccccCCC Confidence 4654311 111110 0001111 1111122235555 No 164 >protein:vir:1023 Length: 392 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:20 # MgeName: bIL286 # Cross-refs: genbank:acc:NP_076677;genbank:gi:13095786;genbank:GeneID:920364 Probab=97.84 E-value=1.5e-05 Score=46.97 Aligned_cols=377 Identities=11% Similarity=0.037 Sum_probs=150.8 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcc-cccccccCccccccccccChH--- Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQ-VEYINSQGKIQERDYMTLNLR--- 76 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~-~~~~~~~~~~~~~~~~~ln~~--- 76 (517) ||+|+++++.- .......... +. ++ .....+..++.|.... +. .+..+..+.- T Consensus 3 m~~f~~~~~~~----~~~~~~~~~~------~~-~~---~~~~~~~~~~~~~~~~~v~---------~~~al~~~~v~~~ 59 (392) T protein:vir:10 3 LPILNFINQTN----DPPEVGSVQS------YF-PD---GNDAQIMESLLGDNNEWVS---------ARAALRNSDLFSI 59 (392) T ss_pred chhhhhhhccc----cccccccccc------cc-cc---CchhhhhhhhcCCCCceec---------hHHhhccHHHHHH Confidence 88886544311 1000000000 00 00 0001111222222110 00 0001111111 Q ss_pred -HHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe-CCee- Q lcl|Aclame:pro 77 -KLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD-NGEI- 153 (517) Q Consensus 77 -~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d-~g~~- 153 (517) ..||+..|++ .+.+.+... ..+.+.=+... ....-++.++.+.+..|.+++.+..| +|++ T Consensus 60 i~~ia~~ia~l------p~~~~~~~~--------~~l~~~PN~~~---t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~ 122 (392) T protein:vir:10 60 ILQLSSDLAIV------KINAEKKKN--------QGIIDNPSTNA---NKHGFWQSMFAQLLLGGEAFAYRWRNANGADM 122 (392) T ss_pred HHHHHHhhccC------ceeeccchh--------hhHhhcCCCCC---CHHHHHHHHHHHhhhcCcEEEEEEECCCCcEE Confidence 3455555543 233322211 01111111111 11223344556777889988887766 4554 Q ss_pred EEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccc Q lcl|Aclame:pro 154 EFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLE 233 (517) Q Consensus 154 ~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~ 233 (517) .+..++|+.+-+.....++. .+|+ ++ +... ..+..+.+ T Consensus 123 ~L~~l~~~~v~~~~~~~~~~-----------------~~y~------------------~~---~~~~---~~~~~~~~- 160 (392) T protein:vir:10 123 KWEYLRPSQVNTYYFEYENG-----------------MYYN------------------IT---FDDP---KIEPILQA- 160 (392) T ss_pred EEEEEcCceeEEEEcCCCce-----------------EEEE------------------EE---ecCc---ccceeEEE- Confidence 57777777766542222211 1111 00 0000 00000000 Q ss_pred cccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHH-HHHh-ccceeec--chHH Q lcl|Aclame:pro 234 ELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWW-EIKM-GQRTVFV--SDVM 309 (517) Q Consensus 234 ~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~-e~~~-~~~~i~v--~~~~ 309 (517) + +++ ++|++.+.+ ....+|+|-+.-+...|+.... ..++.. -++. +++.-++ |... T Consensus 161 --~---~~e----------iih~~~~~~----~~~~~G~s~i~~~~~~i~~~~~-~~~~~~~~f~ng~~p~gil~~~~~~ 220 (392) T protein:vir:10 161 --P---QSD----------LIHMKLLSI----DGGKTGISPLYSLRRESKIQRA-SDRLTISSLNSSLNVPGVLTVKGGG 220 (392) T ss_pred --c---ccc----------EEEecCCCC----CCccccccHHHHHHHHHHHHHH-HHHHHHHHHhccCCCceEEEeCCCC Confidence 0 011 345554321 1335799999888888855444 444444 4554 4444333 2211 Q ss_pred hccCCCCcccccCccCCcccceeeeecCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHH Q lcl|Aclame:pro 310 LRTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTAT 389 (517) Q Consensus 310 l~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAt 389 (517) ... +.........|....+....+-. +++-.++.++....+.+..+..+...+.|+..-|++|..+|+......+.+ T Consensus 221 ~~~--~~~~~~~~~~~~~~~~~g~~~vl-~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~lg~~~~~~~~~~ 297 (392) T protein:vir:10 221 LLS--DKDKASRSRSFMKRSRSGGPVVL-DDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQ 297 (392) T ss_pred Cch--HHHHHHHHHHHhccccCCCeeec-CCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccHHH Confidence 100 00000000000000000000001 223334555555556677888888888999999999999985433222121 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCC Q lcl|Aclame:pro 390 EIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIP 469 (517) Q Consensus 390 ei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S 469 (517) +.. ..++.+|..+++.|..-.+. .+. . .+.++...-+-.|..+.+..+.+++.+|+++ T Consensus 298 ~~~--------------~f~~~~l~P~~~~ie~~l~~-~L~-----~--~~~~d~~~~~~~d~~~~~~~~~~l~~~g~~t 355 (392) T protein:vir:10 298 QIS--------------GMYASALNRYLRPAISELEY-KLS-----D--HISVNMRPAIDPLGDNYLSTISTATRWGALA 355 (392) T ss_pred HHH--------------HHHHHHHHHHHHHHHHHHHH-hcc-----c--cccccchhhhccCHHHHHHHHHHHHhCCCcC Confidence 111 12223333333332221111 111 1 1222222223456677778888999999999 Q ss_pred HHHHHHhh--CCCCHHHHHHHHHHHHHhccccCCCCCccccCC Q lcl|Aclame:pro 470 TVEAIQRI--FKVPKKTAEQWLEEIRKDQIELDPVTISQRAQK 510 (517) Q Consensus 470 ~~~~l~~~--~~~~eeea~~el~~i~~E~~~~~~~~~~~~~~~ 510 (517) ..++.+.+ .|+...|+.+ .|...+.+.+++..|-+ T Consensus 356 ~nE~r~~l~~~g~~p~e~r~------~e~l~~~~~Gd~~~p~p 392 (392) T protein:vir:10 356 ENQATFVLQEAGYIPKDLPA------PENTNKKTTGQSNEPVP 392 (392) T ss_pred HHHHHHHHHhcCCCccccch------hcCCCCCCCCCCCCCCC Confidence 98876532 4665543321 12222222111111111 No 165 >protein:vir:3989 Length: 392 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:319 # MgeName: BK5-T # Cross-refs: genbank:acc:NP_116497;genbank:gi:14251130;genbank:GeneID:921299 Probab=97.84 E-value=1.5e-05 Score=46.97 Aligned_cols=377 Identities=11% Similarity=0.037 Sum_probs=150.8 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcc-cccccccCccccccccccChH--- Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQ-VEYINSQGKIQERDYMTLNLR--- 76 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~-~~~~~~~~~~~~~~~~~ln~~--- 76 (517) ||+|+++++.- .......... +. ++ .....+..++.|.... +. .+..+..+.- T Consensus 3 m~~f~~~~~~~----~~~~~~~~~~------~~-~~---~~~~~~~~~~~~~~~~~v~---------~~~al~~~~v~~~ 59 (392) T protein:vir:39 3 LPILNFINQTN----DPPEVGSVQS------YF-PD---GNDAQIMESLLGDNNEWVS---------ARAALRNSDLFSI 59 (392) T ss_pred chhhhhhhccc----cccccccccc------cc-cc---CchhhhhhhhcCCCCceec---------hHHhhccHHHHHH Confidence 88886544311 1000000000 00 00 0001111222222110 00 0001111111 Q ss_pred -HHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe-CCee- Q lcl|Aclame:pro 77 -KLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD-NGEI- 153 (517) Q Consensus 77 -~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d-~g~~- 153 (517) ..||+..|++ .+.+.+... ..+.+.=+... ....-++.++.+.+..|.+++.+..| +|++ T Consensus 60 i~~ia~~ia~l------p~~~~~~~~--------~~l~~~PN~~~---t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~ 122 (392) T protein:vir:39 60 ILQLSSDLAIV------KINAEKKKN--------QGIIDNPSTNA---NKHGFWQSMFAQLLLGGEAFAYRWRNANGADM 122 (392) T ss_pred HHHHHHhhccC------ceeeccchh--------hhHhhcCCCCC---CHHHHHHHHHHHhhhcCcEEEEEEECCCCcEE Confidence 3455555543 233322211 01111111111 11223344556777889988887766 4554 Q ss_pred EEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccc Q lcl|Aclame:pro 154 EFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLE 233 (517) Q Consensus 154 ~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~ 233 (517) .+..++|+.+-+.....++. .+|+ ++ +... ..+..+.+ T Consensus 123 ~L~~l~~~~v~~~~~~~~~~-----------------~~y~------------------~~---~~~~---~~~~~~~~- 160 (392) T protein:vir:39 123 KWEYLRPSQVNTYYFEYENG-----------------MYYN------------------IT---FDDP---KIEPILQA- 160 (392) T ss_pred EEEEEcCceeEEEEcCCCce-----------------EEEE------------------EE---ecCc---ccceeEEE- Confidence 57777777766542222211 1111 00 0000 00000000 Q ss_pred cccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHH-HHHh-ccceeec--chHH Q lcl|Aclame:pro 234 ELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWW-EIKM-GQRTVFV--SDVM 309 (517) Q Consensus 234 ~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~-e~~~-~~~~i~v--~~~~ 309 (517) + +++ ++|++.+.+ ....+|+|-+.-+...|+.... ..++.. -++. +++.-++ |... T Consensus 161 --~---~~e----------iih~~~~~~----~~~~~G~s~i~~~~~~i~~~~~-~~~~~~~~f~ng~~p~gil~~~~~~ 220 (392) T protein:vir:39 161 --P---QSD----------LIHMKLLSI----DGGKTGISPLYSLRRESKIQRA-SDRLTISSLNSSLNVPGVLTVKGGG 220 (392) T ss_pred --c---ccc----------EEEecCCCC----CCccccccHHHHHHHHHHHHHH-HHHHHHHHHhccCCCceEEEeCCCC Confidence 0 011 345554321 1335799999888888855444 444444 4554 4444333 2211 Q ss_pred hccCCCCcccccCccCCcccceeeeecCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHH Q lcl|Aclame:pro 310 LRTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTAT 389 (517) Q Consensus 310 l~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAt 389 (517) ... +.........|....+....+-. +++-.++.++....+.+..+..+...+.|+..-|++|..+|+......+.+ T Consensus 221 ~~~--~~~~~~~~~~~~~~~~~g~~~vl-~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~lg~~~~~~~~~~ 297 (392) T protein:vir:39 221 LLS--DKDKASRSRSFMKRSRSGGPVVL-DDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQ 297 (392) T ss_pred Cch--HHHHHHHHHHHhccccCCCeeec-CCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccHHH Confidence 100 00000000000000000000001 223334555555556677888888888999999999999985433222121 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCC Q lcl|Aclame:pro 390 EIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIP 469 (517) Q Consensus 390 ei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S 469 (517) +.. ..++.+|..+++.|..-.+. .+. . .+.++...-+-.|..+.+..+.+++.+|+++ T Consensus 298 ~~~--------------~f~~~~l~P~~~~ie~~l~~-~L~-----~--~~~~d~~~~~~~d~~~~~~~~~~l~~~g~~t 355 (392) T protein:vir:39 298 QIS--------------GMYASALNRYLRPAISELEY-KLS-----D--HISVNMRPAIDPLGDNYLSTISTATRWGALA 355 (392) T ss_pred HHH--------------HHHHHHHHHHHHHHHHHHHH-hcc-----c--cccccchhhhccCHHHHHHHHHHHHhCCCcC Confidence 111 12223333333332221111 111 1 1222222223456677778888999999999 Q ss_pred HHHHHHhh--CCCCHHHHHHHHHHHHHhccccCCCCCccccCC Q lcl|Aclame:pro 470 TVEAIQRI--FKVPKKTAEQWLEEIRKDQIELDPVTISQRAQK 510 (517) Q Consensus 470 ~~~~l~~~--~~~~eeea~~el~~i~~E~~~~~~~~~~~~~~~ 510 (517) ..++.+.+ .|+...|+.+ .|...+.+.+++..|-+ T Consensus 356 ~nE~r~~l~~~g~~p~e~r~------~e~l~~~~~Gd~~~p~p 392 (392) T protein:vir:39 356 ENQATFVLQEAGYIPKDLPA------PENTNKKTTGQSNEPVP 392 (392) T ss_pred HHHHHHHHHhcCCCccccch------hcCCCCCCCCCCCCCCC Confidence 98876532 4665543321 12222222111111111 No 166 >protein:vir:483 Length: 413 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:11 # MgeName: P27 # Cross-refs: genbank:acc:NP_543090;swissprot:trembl:q8w629;genbank:gi:18249902;uniprot:Q8W629;genbank:GeneID:929685 Probab=97.79 E-value=1.9e-05 Score=46.46 Aligned_cols=393 Identities=11% Similarity=0.060 Sum_probs=164.7 Q ss_pred HHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccChH----HHHH Q lcl|Aclame:pro 5 QRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLR----KLSA 80 (517) Q Consensus 5 ~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~----~~i~ 80 (517) ...++||+| ++ ...+..+. .|..++.+-.+........ ....+.++.- ..|| T Consensus 1 ~~f~~~f~r-------~~------~~~~~~~~-------~~~~~~~~~~~~~~g~~v~----~~~~l~~~~v~~~i~~Ia 56 (413) T protein:vir:48 1 MFFSGLFQR-------KS------DAPVTTPA-------ELAEAIGLSYDTYTGKRIS----SQRAMRLTAVYSCVRVLA 56 (413) T ss_pred Cccchhhcc-------Cc------cCCccchH-------HHHHhhhcCcccccCceec----hhhhhccHHHHHHHHHHH Confidence 112233332 00 11111121 2222332221110000000 0001111111 4455 Q ss_pred HHHhhhhcCCcceeEecCcccccccccchhHHHHHHHH-HHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeCCee-EEEEE Q lcl|Aclame:pro 81 DVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQH-VFQHNKFIKNLSDYLEPTFALGGLTVRPYVDNGEI-EFSWA 158 (517) Q Consensus 81 ~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~-~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~g~~-~i~~v 158 (517) +..|++ +..+.-.+..... ......+...|+. --.......-++.++.+.+..|.+++.+..+.|++ .+..+ T Consensus 57 ~~iA~~----p~~~~~~~~~~~~--~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~~~~i~~~~g~~~~L~~l 130 (413) T protein:vir:48 57 ESVGML----PCSLYKISGTLKT--RVVDERLHKLVSAKPNGYMTPQEFWELVIVCLCLRGNFYAYKVKALGEVVELLPI 130 (413) T ss_pred HhhhhC----ceEEEEecCCcce--eecccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCceEEEEEeCCCcEEEEEEE Confidence 555543 3332211111110 1111223333321 10111223334455667777898888877776764 35556 Q ss_pred cCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccccCC Q lcl|Aclame:pro 159 LANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEG 238 (517) Q Consensus 159 ~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~ 238 (517) +|+.+-+. .+.++ ..+|. +.. . .|..+ .| + T Consensus 131 ~~~~v~~~-~~~~~-----------------~~~y~-~~~--~------~g~~~----~~------------~------- 160 (413) T protein:vir:48 131 DPGCVEPK-LNSQW-----------------QPVYQ-VTF--P------DGSVD----VL------------T------- 160 (413) T ss_pred cCceEEEE-EcCCc-----------------eEEEE-EEe--c------CceEE----EE------------c------- Confidence 66666553 12111 11111 000 0 00000 01 0 Q ss_pred CCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHh-ccceeecchHHhccCCCCc Q lcl|Aclame:pro 239 MQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKM-GQRTVFVSDVMLRTVPDES 317 (517) Q Consensus 239 l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~-~~~~i~v~~~~l~~~~~~~ 317 (517) +. -+.||+.+.. +.++|+|.+.-+...|+.....-....+-++. +.++-++ .....-. T Consensus 161 -~~----------evih~~~~~~-----d~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil-----~~~~~~~ 219 (413) T protein:vir:48 161 -QD----------EIWHVRTLTL-----DGLVGLNPIAYAREAISLAAATEEHGARLFGNGAVTSGVL-----RTEQKLT 219 (413) T ss_pred -cc----------cEEEecCcCC-----CCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEE-----EeCCCCC Confidence 00 1345553311 23579999988888887655444333444554 4454443 1111110 Q ss_pred ccccCccCCcc-cceeeeec------CCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCcc-chHH Q lcl|Aclame:pro 318 GMPPPQVFDPD-VNVYKSIR------MGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSM-KTAT 389 (517) Q Consensus 318 ~~~~~~~fd~~-~~~y~~~~------~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~-~TAt 389 (517) .... ..+... ...|.+.. .-+++-.++.++......++.+..+...+.|+...|++|..++..+++. .++. T Consensus 220 ~e~~-~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~n~e 298 (413) T protein:vir:48 220 PDAY-ERLKKDFEERHTGLGNAHRPMILEMGLDWKSMALNAEDSQFLETRKFQLEEICRLFRVPLHMVQNTDRATFNNIE 298 (413) T ss_pred HHHH-HHHHHHHHHHhcCccccCcceecCCCceEEeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCcCCCcccHH Confidence 0000 000000 01122111 0122333555555555667778888888899999999999998654332 2222 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCC Q lcl|Aclame:pro 390 EIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIP 469 (517) Q Consensus 390 ei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S 469 (517) +. . ...++.+|.-++..|....+. .++.........+.++++.-+..|..+.++.+.+++++|+++ T Consensus 299 ~~---~----------~~f~~~~i~P~~~~ie~~l~~-~L~~~~~~~~~~~~fd~~~l~~~d~~~~~~~~~~~~~~g~~T 364 (413) T protein:vir:48 299 EL---G----------LGFINYSLVPYLTRIEQRINT-GLVRESKQGKFYAKFNAGALLRGDMKSRFEAYATGINWGIYS 364 (413) T ss_pred HH---H----------HHHHHHHHHHHHHHHHHHHHh-hccCccccCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcC Confidence 22 1 222233344444433322211 222222223445777777766778999999999999999999 Q ss_pred HHHHHHhhCCCCHHH-HHHHHHHHHHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 470 TVEAIQRIFKVPKKT-AEQWLEEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 470 ~~~~l~~~~~~~eee-a~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) .-+++. ..|+..-+ .++-+.. . +....+...++.......|+++ T Consensus 365 ~NE~R~-~~g~~p~~ggD~~~~~--~-n~~~~~~~~~~~~~~~~~~~~~ 409 (413) T protein:vir:48 365 PNDCRD-LEDMNPRPGGDVYLTP--M-NMTTSPSAGDDNGKKKESGDAD 409 (413) T ss_pred HHHHHH-HhCCCCCCCcceeecc--c-cccccccccccCCCCCCCCCcc Confidence 999765 44654321 2211111 1 1111111222222222233333 No 167 >protein:vir:2683 Length: 412 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:57 # MgeName: phiSLT # Cross-refs: genbank:acc:NP_075502;genbank:gi:12719431;genbank:GeneID:920150 Probab=97.78 E-value=2e-05 Score=46.40 Aligned_cols=390 Identities=13% Similarity=0.075 Sum_probs=155.7 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccC----hH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLN----LR 76 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln----~~ 76 (517) |++|.+ .+++++....+....++.-+. .+..+-.|.......+. .+..+..+ -- T Consensus 1 m~~~~~-~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~v~---------~~~a~~~~~v~~~i 58 (412) T protein:vir:26 1 MNVIAK-ENIVTRIKKKLIDNWIDQSTS------------KLYDFSPWKNRSFWGVI---------NNTLETNETIFSAI 58 (412) T ss_pred Cccchh-hhhhhhhhhhHhhhhhccccc------------ccccccccCCccccccc---------hhhhhccHHHHHHH Confidence 999966 444444333222222110000 00001011110000000 00011111 11 Q ss_pred HHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHH-HHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe-CCee- Q lcl|Aclame:pro 77 KLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQH-VFQHNKFIKNLSDYLEPTFALGGLTVRPYVD-NGEI- 153 (517) Q Consensus 77 ~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~-~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d-~g~~- 153 (517) ..||+..|.+ |..+.=.+. .....+...|+. --....-..-.+.++.+.+..|.+++.+..+ .|.+ T Consensus 59 ~~ia~~iA~l----p~~~~~~~~-------~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~ 127 (412) T protein:vir:26 59 TKLSNSMASL----PLKMYEDYK-------VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPS 127 (412) T ss_pred HHHHHhHhhC----ceeEeeccc-------cccchHHHHHHhhcccCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcEE Confidence 4566666654 221110111 111122222221 1000111222344566777788888877665 4543 Q ss_pred EEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccc Q lcl|Aclame:pro 154 EFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLE 233 (517) Q Consensus 154 ~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~ 233 (517) .+..++|+.+-+...+.++. .+|+ + ...+ |..+.+ T Consensus 128 ~L~~l~~~~v~v~~~~~~~~-----------------~~y~------------------~-----~~~~----g~~~~~- 162 (412) T protein:vir:26 128 KLFLLNPDVVEMLIENQSRE-----------------LYYS------------------I-----HAAT----GNKLIV- 162 (412) T ss_pred EEEEEcCceeEEEEeCCCcE-----------------EEEE------------------E-----EcCC----ceEEEE- Confidence 56777788776643222211 1111 0 0000 111100 Q ss_pred cccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHH-hccceeecchHHhcc Q lcl|Aclame:pro 234 ELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIK-MGQRTVFVSDVMLRT 312 (517) Q Consensus 234 ~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~-~~~~~i~v~~~~l~~ 312 (517) + +. -++||+.+.+ .+..+|+|.+.-+...++-.... ..+ -+. .+.+.-++ +.. T Consensus 163 --~---~~----------evih~~~~~~----~~~~~G~s~i~~~~~~i~~~~a~-~~~--~~~~~~~~~~~i----~~~ 216 (412) T protein:vir:26 163 --H---NM----------DMLHFKHIVA----SNMVQGISPIDVLKNTTDFDNAV-RTF--NLTEMQKPDSFM----LKY 216 (412) T ss_pred --c---cc----------cEEEeCCCCC----CCCcccccHHHHHHHHHHHHHHH-HHH--HHHhcCCCCceE----Eec Confidence 0 00 1345554311 13446888887666655543322 222 122 22211111 111 Q ss_pred CCCCcccc---cCccCCcccceeee---ecCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCcc- Q lcl|Aclame:pro 313 VPDESGMP---PPQVFDPDVNVYKS---IRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSM- 385 (517) Q Consensus 313 ~~~~~~~~---~~~~fd~~~~~y~~---~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~- 385 (517) ........ ....|.. .+.. +..-+++-.++.++......++.+..+...++|+..-|++|..++...++. T Consensus 217 ~~~l~~e~~~~~~~~~~~---~~~~~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~afgVPp~~lg~~~~~~~ 293 (412) T protein:vir:26 217 GSNVGKEKRQQVLEDFKQ---YYEENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFLNARSNTNF 293 (412) T ss_pred CCCCCHHHHHHHHHHHHH---HhhcCCCeeecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCc Confidence 11111100 0001100 0110 000122333444554445567777777778899999999999998654332 Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCC-CCCccceEEEeCCCccCCHHHHHHHHHHHHh Q lcl|Aclame:pro 386 KTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGE-IPSAEHIGVDFDDGVFQDRSALLRFYGQAKT 464 (517) Q Consensus 386 ~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~-~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~ 464 (517) .++.+... .-...++.-+...++.+|.. .++... ......+.+++++-+..|..+.++.+.+++. T Consensus 294 sn~e~~~~--~f~~~~l~P~~~~ie~~ln~------------kLl~~~~~~~~~~~~fd~~~l~~~d~~~~~~~~~~~~~ 359 (412) T protein:vir:26 294 AKNEELNR--FYLQHTLLPIVKQYEEEFNR------------KLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVR 359 (412) T ss_pred ccHHHHHH--HHHHHHHHHHHHHHHHHHHh------------hcCCcccccCcceEEeechhhhccCHHHHHHHHHHHHh Confidence 22322211 11111222222222222222 111111 1123346666666567799999999999999 Q ss_pred cCCCCHHHHHHhhCCCCHHH-HHHHHHHHHHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 465 FGFIPTVEAIQRIFKVPKKT-AEQWLEEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 465 ~G~~S~~~~l~~~~~~~eee-a~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) +|+|+.-+++.. .|+..-+ .++-+- +....|.......+....|||| T Consensus 360 ~G~~t~NE~R~~-~gl~p~~ggD~~~~-----~~n~~~~~~~~~~~~~~~gG~~ 407 (412) T protein:vir:26 360 SGYYTINDIREW-EDLPPVEGGDKPLI-----SGDLYPIDTPLELRKSLKGGDK 407 (412) T ss_pred CCCcCHHHHHHH-hCCCCCCCcCeeee-----cccccccccchhhcccccCCCC Confidence 999999997654 4654321 111110 0000111111111222334444 No 168 >protein:vir:99672 Length: 532 # NCBI annotation: Head-to-tail joining protein # Family: family:all:481 # MgeID: mge:1523 # MgeName: VP4 # Cross-refs: genbank:acc:YP_249587;genbank:gi:68299738;genbank:GeneID:3799987 Probab=97.68 E-value=3e-05 Score=45.40 Aligned_cols=462 Identities=10% Similarity=-0.000 Sum_probs=179.3 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccChHHHHH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLRKLSA 80 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~~~i~ 80 (517) |-= .-|.-+. .+.++..-+ .+-.+...-...|+.+|.=..|.+-........+...+..=+.+...+ T Consensus 1 m~~--~~~~~~~-------~~~~~~r~~----~l~~~R~~~e~~w~e~~~~~lP~~~~~~~~~~~~~~~~~~dst~~~a~ 67 (532) T protein:vir:99 1 MAE--VEKTGFA-------ADGAAAAYN----RLKNDRGAYETRAEDCATYTIPSVFPSATADGSTSYTTPWQSIGARGL 67 (532) T ss_pred Ccc--hhhcccc-------HHHHHHHHH----HHHHHhhHHHHHHHHHHHHhhhcccCCCCCcchhhccccccchHHHHH Confidence 100 0000000 000100000 000011112344555443222221111111111111122224445555 Q ss_pred HHHhhhhcCCc-------ceeEecCcccccc---------cccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEE Q lcl|Aclame:pro 81 DVLSGLVFNEQ-------CEVYVSDAKDEEK---------KDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTV 144 (517) Q Consensus 81 ~~~A~ll~~e~-------~~i~~~~~~~~~~---------~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~ 144 (517) +.+|+-|.+-. -++.++++...+. .....+...+.+...+..++|...+.++..+..++|.+.+ T Consensus 68 ~~LAa~L~~~ltpp~~~WF~l~~~d~~l~~~~~~~~~~~~v~~~L~~ve~~~~~~~~~snf~~~~~~~~~~L~~~G~a~l 147 (532) T protein:vir:99 68 NNLASKLMLALFPVGSSFFKLNVSELEVKQSITSPEELTEIATGLAMVERICMNYMESNSFRPTLHAAIKQLLVAGNVLL 147 (532) T ss_pred HHHHHHHHHhhcCCCCccccccCCHHHHhccCCChhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCcEeE Confidence 55555444321 1133333222111 1111122334455678889999999999999999999888 Q ss_pred EEEEeC----CeeEEEEEcCCeEEEEEEcCCceEEEEEEEEEEEE-----------ec--CCcEEEEEEEEEeecceeec Q lcl|Aclame:pro 145 RPYVDN----GEIEFSWALANAFYPLRSNSNGISEGVMKSVTTKV-----------IG--NKTVYYTLLEFHEWEKTEEG 207 (517) Q Consensus 145 k~~~d~----g~~~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~-----------~~--~~~~~yt~lE~h~~~~~~~~ 207 (517) -+-.+. ....+..+|-.+++ +..|..+....+|....... .. .+.+.+..+++++.-..... T Consensus 148 ~~~~~~~~~~~~~~f~~~pl~~y~-v~~d~~G~v~~ivrr~~~~~~~l~e~~~~~~~~~~~~~~p~~~v~v~~~v~~~~~ 226 (532) T protein:vir:99 148 YIPSTEQVEGQSNAPKLYKLHNFV-VERDAYDNVLQIVTEDKIARAALPEDVRKSLEDAQGDQNPSEEVTIYTHVYRDPE 226 (532) T ss_pred EecccccccCcccceEEEEcCeEE-EeeCCCCCeeeEeeeeeecHHhcChHHHHHhhccccccCCCcceEEEEEEEecCC Confidence 544432 34568888888866 45566665555443221100 00 00111222222221111111 Q ss_pred cceEEEEEEEeecCCccccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHH Q lcl|Aclame:pro 208 ESLYVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKIND 287 (517) Q Consensus 208 ~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~ 287 (517) ...|..-+++ . |..+++.+- .-++...||+.+ -.+...++.||+|--..+.+-++.|+. T Consensus 227 ~~~~~~~~~~---~-----g~~~~~~~~---------~~~~~e~P~~~~----Rw~~~~ge~YGrgp~~~~l~D~k~L~~ 285 (532) T protein:vir:99 227 AMVFRSYQEI---D-----GEIVAGTEG---------EYPLDSCPWIPV----RLIKMPNEDYGRSFVEEYLGDLKSLEN 285 (532) T ss_pred CCeeEEEEee---c-----Cceeccccc---------ccccccCCceee----eeeecCCCccccchHHHHHHHHHHHHH Confidence 1111111111 0 111211110 001122233333 245566889999999999999999986 Q ss_pred HHHHHHHH-HHhccceeecchHHhccCCCCcccccCccCCcccceeeeecCCCCCCcceEEe--cccChHHHHHHHHHHH Q lcl|Aclame:pro 288 TYDQFWWE-IKMGQRTVFVSDVMLRTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVT--HDIRTEQYKEAINQAL 364 (517) Q Consensus 288 ~~s~~~~e-~~~~~~~i~v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~--~dir~e~~~~~l~~~l 364 (517) .--....- ....++...|+++-+..-.+ .....-..+.+ +..+. +..++ ..-+...-...++.+. T Consensus 286 l~~~~l~~~~~a~~~~~lv~p~g~~~~~~--------~~~~~~g~~v~--g~~~~--i~~~~~~~~~~~~~~~~~i~~~~ 353 (532) T protein:vir:99 286 LYEAIVKMSMISSKVLFFVNPNGVTQIRR--------VAKANTGDFVA--GRKQD--VEVFQLEKYNDFQVAKATADDIE 353 (532) T ss_pred HHHHHHHHHHHHcCCCceeccccccchhh--------hccCCCcceec--CCccc--ceeeecccccchhHHHHHHHHHH Confidence 65444443 35666665664332211010 00011111221 21121 22222 2122333344444444 Q ss_pred HHHHHHhCCCccccccCCCccchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEE Q lcl|Aclame:pro 365 RTLEMELKLSVGTFSFDGRSMKTATEIVSENDLTYRTRNDHVYE-VEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVD 443 (517) Q Consensus 365 ~~i~~~~g~s~~~~~~~~~~~~TAtei~a~~~~~~~t~~~~~~~-~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~ 443 (517) +.|....=+. .+...+....|||||....+...+...-.-.. -...|.-|+.-++.++.-.+.....+.....+.+. T Consensus 354 ~rI~~af~~~--~~~~~d~~r~TAtEV~~r~~E~~~~LGpv~~rl~~E~l~Pli~r~~~il~r~g~lP~~p~~~~~~~iv 431 (532) T protein:vir:99 354 KRLSYAFMLN--SAVQRGGDRVTAEEIRYVAGELEDTLGGVYSLLSQELQLPLVKILLKELQATSKIPNLPKEAVEPAIA 431 (532) T ss_pred HHHHHHHhhh--hcccCCCCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCChhhccccee Confidence 4443322111 12222344579999999998888877653322 23344555555555543333322222222233221 Q ss_pred eCCCccCCHHHHHHHHHHHHh-----cC-------CCCHHHHH---HhhCCC-------CHHHHHHHHHHHHHhccccCC Q lcl|Aclame:pro 444 FDDGVFQDRSALLRFYGQAKT-----FG-------FIPTVEAI---QRIFKV-------PKKTAEQWLEEIRKDQIELDP 501 (517) Q Consensus 444 f~d~i~~d~~~~~~~~~~~~~-----~G-------~~S~~~~l---~~~~~~-------~eeea~~el~~i~~E~~~~~~ 501 (517) .-.+..+.++.+..+.+ +. .+....++ ....|+ ++||++++.++.+..+++.. T Consensus 432 ----~~is~Laraq~~~~l~~~~~~laq~~p~~~d~id~d~~~~~~a~~~GV~~~~i~r~~ee~~~~~~q~~~~~~~~~- 506 (532) T protein:vir:99 432 ----TGLEALGRGHDLNKLNVFIDYMIKLAGLQDDDINLLDVKMRLANSLGMDTTGLILTQQDKQAKMAEASTAAGMVT- 506 (532) T ss_pred ----ecchHHHHHHHHHHHHHHHHHHHhhcchhhhhCCHHHHHHHHHHHhCCChhhccCCHHHHHHHHHHHHHHHHHHH- Confidence 11222333222221110 01 12233333 234454 23444444333222221110 Q ss_pred CCCcc-ccCCCC-CCCCC Q lcl|Aclame:pro 502 VTISQ-RAQKRM-FGDEE 517 (517) Q Consensus 502 ~~~~~-~~~~~~-~G~ee 517 (517) ..++ .+..+. ....+ T Consensus 507 -a~~~~~~~~~~~~~~~~ 523 (532) T protein:vir:99 507 -AGQQMGAAGGQAAAAMM 523 (532) T ss_pred -HHHHHHHHHHHhcchhH Confidence 0000 000011 11222 No 169 >protein:vir:9359 Length: 348 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:166 # MgeName: phi 12 # Cross-refs: genbank:acc:NP_803337;genbank:gi:29028648;genbank:GeneID:1258089 Probab=97.65 E-value=3.2e-05 Score=45.21 Aligned_cols=331 Identities=14% Similarity=0.131 Sum_probs=137.2 Q ss_pred cCCCcccccccccCccccccccccChHHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHH Q lcl|Aclame:pro 50 EGDYPQVEYINSQGKIQERDYMTLNLRKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNL 129 (517) Q Consensus 50 ~g~~~~~~~~~~~~~~~~~~~~~ln~~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~ 129 (517) -++-|..-++. . +.+-+.+++||-..|.... ...+ |. T Consensus 1 ia~lp~~~~~~---------~------~~~~~~l~~lL~~~PN~~~---------------t~~~----------f~--- 37 (348) T protein:vir:93 1 MASLPLKMYED---------Y------KVVNTEVSDLLTVSPNNSL---------------SSFD----------FI--- 37 (348) T ss_pred CcccceEeEec---------C------cCcccHHHHHHHhCCCCCC---------------CHHH----------HH--- Confidence 11111100100 0 1112334444432221110 0112 22 Q ss_pred HHHHHHHHhhCCEEEEEEEe-CCee-EEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeec Q lcl|Aclame:pro 130 SDYLEPTFALGGLTVRPYVD-NGEI-EFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEG 207 (517) Q Consensus 130 ~~~~~~a~~~G~~~~k~~~d-~g~~-~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~ 207 (517) ...+...+..|.+++.+..+ .|++ .+..++|+.+-++..+.++ ..+|+ T Consensus 38 ~~~~~~l~l~Gna~~~i~r~~~G~~~~L~~l~~~~v~~~~~~~~~-----------------~~~y~------------- 87 (348) T protein:vir:93 38 NQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSR-----------------ELYYS------------- 87 (348) T ss_pred HHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCCceEEEEeCCCc-----------------EEEEE------------- Confidence 23455666788888887765 4544 4555666655543221111 11111 Q ss_pred cceEEEEEEEeecCCccccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHH Q lcl|Aclame:pro 208 ESLYVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKIND 287 (517) Q Consensus 208 ~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~ 287 (517) ++. .+ |..+.+ + +. + +.||+.+.+. +..+|+|.+.-+...++..+. T Consensus 88 ---------~~~-~~----g~~~~~---~---~~-------e---iih~r~~~~~----~~~~G~s~~~~~~~~i~~~~~ 133 (348) T protein:vir:93 88 ---------IHA-AT----GNKLIV---H---NM-------D---MLHFKHIVAS----NMVQGISPIDVLKNTTDFDNA 133 (348) T ss_pred ---------EEc-CC----CeEEEE---c---cc-------c---EEEecCCCCC----CceeeccHHHHHHHHHHHHHH Confidence 000 00 111100 0 00 1 3455543221 334688888777666654433 Q ss_pred HHHHHHHHHHhc-cceeecchHHhccCCCCcc---cccCccCCcccceeee---ecCCCCCCcceEEecccChHHHHHHH Q lcl|Aclame:pro 288 TYDQFWWEIKMG-QRTVFVSDVMLRTVPDESG---MPPPQVFDPDVNVYKS---IRMGTDEEFVKDVTHDIRTEQYKEAI 360 (517) Q Consensus 288 ~~s~~~~e~~~~-~~~i~v~~~~l~~~~~~~~---~~~~~~fd~~~~~y~~---~~~~~~~~~v~~~~~dir~e~~~~~l 360 (517) + ..+ .+..+ .+..++ +.....-.. ......|.. .|.. +..-+++..++.++......++.+.. T Consensus 134 ~-~~~--~~~~~~~~~~~i----~~~~~~l~~e~~~~~~~~~~~---~~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~ 203 (348) T protein:vir:93 134 V-RTF--NLTEMQKPDSFM----LKYGSNVSTEKRQQVLEDFKQ---YYEENGGILFQEPGVEIEPLPKKYVSEDIVASE 203 (348) T ss_pred H-HHH--HHHhcCCCceeE----EecCCCCCHHHHHHHHHHHHH---HhhcCCCeeecCCCceEEEcCCChhHHHHHHHH Confidence 2 222 23222 221111 111111000 000011110 1110 00112333355555554555777777 Q ss_pred HHHHHHHHHHhCCCccccccCCCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC-CCCCcc Q lcl|Aclame:pro 361 NQALRTLEMELKLSVGTFSFDGRSM-KTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGG-EIPSAE 438 (517) Q Consensus 361 ~~~l~~i~~~~g~s~~~~~~~~~~~-~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~-~~~~~~ 438 (517) +...+.|+...|++|..++..+++. .++.+. . ...++.+|.-++..|-...+. .++.. ...... T Consensus 204 ~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~e~~---~----------~~~~~~~l~P~~~~ie~~l~~-~l~~~~~~~~g~ 269 (348) T protein:vir:93 204 NLTRERVANVFQLPSIFLNARSNTNFAKNEEL---N----------RFYLQHTLLPIVKQYEEEFNR-KLLTKTDREKNR 269 (348) T ss_pred HHHHHHHHHHhCCCHHHhCCCCCCCcccHHHH---H----------HHHHHHHHHHHHHHHHHHHHH-hhCCcccccCcc Confidence 7788899999999999887544332 222211 1 112222333333332221111 12111 111234 Q ss_pred ceEEEeCCCccCCHHHHHHHHHHHHhcCCCCHHHHHHhhCCCCHH-HHHHHHHHHHHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 439 HIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTVEAIQRIFKVPKK-TAEQWLEEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 439 ~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~~~l~~~~~~~ee-ea~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) .+.++++.-+..|..+.++...+++.+|+++.-+++..+ |+..- ..++-+- +....|.......+....|+|| T Consensus 270 ~i~fd~~~l~~~d~~~~a~~~~~~~~~G~~T~NE~R~~~-g~~p~~ggD~~~~-----~~n~~~~~~~~~~~~~~~gg~~ 343 (348) T protein:vir:93 270 YFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWE-DLPPVEGGDKPLI-----SGDLYPIDTPLELRKSLKGGDK 343 (348) T ss_pred eEEeechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHh-CCCCCCCcCeEee-----cccccccccchhhcccccCCCC Confidence 466666666677899999999999999999999976543 65431 1211110 0011111111111222334444 No 170 >protein:vir:1266 Length: 416 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:329 # MgeName: phi-105 # Cross-refs: genbank:acc:NP_690758;genbank:gi:22854998;genbank:GeneID:955213 Probab=97.58 E-value=4.2e-05 Score=44.55 Aligned_cols=398 Identities=11% Similarity=0.073 Sum_probs=167.0 Q ss_pred HHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccc-cccccCcccccccccc-ChHHHHHHH Q lcl|Aclame:pro 5 QRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVE-YINSQGKIQERDYMTL-NLRKLSADV 82 (517) Q Consensus 5 ~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~-~~~~~~~~~~~~~~~l-n~~~~i~~~ 82 (517) .-++++|+|-.. -++.. + ... ..+..||.|.+.+.. .....+-.+. ..+ .--..||+. T Consensus 1 m~~~~~f~~~~~---------~~~~~----~--~~~--~~~~~~~~~~~~~~~~~v~~~~al~~---~~v~~~i~~Ia~~ 60 (416) T protein:vir:12 1 MLLERMFEKRSG---------SSDHE----D--GFN--NILLNMFGGRKTASGERVSESNSLVQ---PDIFACVNVLSDD 60 (416) T ss_pred CccchhcccccC---------ccccC----c--cch--hHHHHhhcCcccccCceechhhhhcc---HHHHHHHHHHHHh Confidence 123444432110 00000 0 011 223446665432210 0000000000 001 011466666 Q ss_pred HhhhhcCCcceeEecCcccccccccchhHHHHHHHH-HHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe-CCee-EEEEEc Q lcl|Aclame:pro 83 LSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQH-VFQHNKFIKNLSDYLEPTFALGGLTVRPYVD-NGEI-EFSWAL 159 (517) Q Consensus 83 ~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~-~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d-~g~~-~i~~v~ 159 (517) .|++ +..+.-......+. .....+...|.. --.......-++.++.+....|.+++.+..+ .|.+ .+..++ T Consensus 61 ia~l----~~~~~~~~~~~~~~--~~~~~l~~~l~~~PN~~~t~~~f~~~~v~~lll~Gna~~~i~r~~~G~~~~L~~l~ 134 (416) T protein:vir:12 61 IAKL----PIHTYKRTDGGIER--KPEHKSAHAVYARPNPYMTAFTWKKLMMTHVLTWGNAYSYIQFGSHGYPEALFPLR 134 (416) T ss_pred hhhC----ceEEEEecCCcccc--ccccHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEC Confidence 6655 22221111111111 111122222221 1001112233445666777789888887776 4543 466677 Q ss_pred CCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccccCCC Q lcl|Aclame:pro 160 ANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEGM 239 (517) Q Consensus 160 a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l 239 (517) |+.+-++..+.++. .+|.. ... |..+.+ + T Consensus 135 ~~~v~v~~~~~~~~-----------------~~~~~----------------------~~~------g~~~~~---~--- 163 (416) T protein:vir:12 135 PDYTNAYVHPTTGM-----------------LWYQT----------------------VLN------GKAIEL---Y--- 163 (416) T ss_pred CcceEEEEeCCCcE-----------------EEEEE----------------------ecC------CeEEEe---c--- Confidence 77766532222111 11110 000 111110 0 Q ss_pred CcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhc-cceeecchHHhccCCCCcc Q lcl|Aclame:pro 240 QEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMG-QRTVFVSDVMLRTVPDESG 318 (517) Q Consensus 240 ~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~-~~~i~v~~~~l~~~~~~~~ 318 (517) . . -+.||+.+.. +.++|+|.+.-+...++....+-....+-++.| .++.++. ....-.. T Consensus 164 -------~-~--eiih~~~~~~-----~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~p~~il~-----~~~~~~~ 223 (416) T protein:vir:12 164 -------D-Y--EVLHFKGLST-----DGIHGKSPIGVVREHIGAQAAATKYNAKLYKNEATPRGILK-----VPAFLDE 223 (416) T ss_pred -------C-c--cEEEecCcCC-----CCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEe-----cCCCCCH Confidence 0 0 1345553311 246799999888888877544443334445654 4444431 1110000 Q ss_pred ---cccCccCCcccceeeeecCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCcc-chHHHHHHH Q lcl|Aclame:pro 319 ---MPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSM-KTATEIVSE 394 (517) Q Consensus 319 ---~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~-~TAtei~a~ 394 (517) ......|..-.......-. +++-.++.++......++.+..+...+.|+...|++|..++...++. .++.+.. T Consensus 224 e~~~~~~~~~~~~~~~~~~~vl-~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~sn~e~~~-- 300 (416) T protein:vir:12 224 KPKENVRKEWKRVNKVENIAII-DYGLEYQSISMPLQEAQFVESMKFNKAQISMIYKVPLHKLNELDKATFSNIEHQS-- 300 (416) T ss_pred HHHHHHHHHHHHHhcCCCeeec-CCCceEEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCccCCCcccHHHHH-- Confidence 0000111100000000001 23334556666666778888888888999999999999998655433 2222221 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC-CCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCCHHHH Q lcl|Aclame:pro 395 NDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGG-EIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTVEA 473 (517) Q Consensus 395 ~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~-~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~~~ 473 (517) ...++.+|.-++..|....+. .++.. .....+.+.+++++-+..|..+.++...+++.+|+|+.-++ T Consensus 301 -----------~~f~~~~l~P~~~~ie~~l~~-~l~~~~~~~~g~~i~fd~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~ 368 (416) T protein:vir:12 301 -----------IEYVRNTLQPWIVNFEQELNV-KLFLDHDQKSGHYVKFNIDSELRGDSKTQAEYLKTLHETGVLNKDEI 368 (416) T ss_pred -----------HHHHHHHHHHHHHHHHHHHHH-hhcCchhhcCCceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHH Confidence 112223333333333222111 11111 11123557777877788899999999999999999999997 Q ss_pred HHhhCCCCHH-HHHHHHHHHHHhccccCCCCCcc--ccCCCCCCCCC Q lcl|Aclame:pro 474 IQRIFKVPKK-TAEQWLEEIRKDQIELDPVTISQ--RAQKRMFGDEE 517 (517) Q Consensus 474 l~~~~~~~ee-ea~~el~~i~~E~~~~~~~~~~~--~~~~~~~G~ee 517 (517) +.. .|+..- ..++-+.... -...+.....+ ..+.+..|+|. T Consensus 369 R~~-~gl~Pi~ggd~~~~~~n--~~~~~~~~~~~~~~~~~~~~gge~ 412 (416) T protein:vir:12 369 REL-LERNPIENGDKYISSLN--YVFLDFLEEYQRLKAGGAMKGGDN 412 (416) T ss_pred HHH-hCCCCCCCcceeeeccc--cccccccchhhccccccccCCCCC Confidence 654 465432 1221111000 00000000000 01111122222 No 171 >protein:vir:3153 Length: 467 # NCBI annotation: capsid protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:316 # MgeName: PhiCh1 # Cross-refs: genbank:acc:NP_665924;genbank:gi:22091110;genbank:GeneID:951257 Probab=97.57 E-value=4.4e-05 Score=44.47 Aligned_cols=397 Identities=9% Similarity=0.037 Sum_probs=161.2 Q ss_pred ccccccccChHHHHHHHHhhhhcCCcceeEecC-cccccccccchhHHHHHHHHH----------HhhhhHHHHHHHHHH Q lcl|Aclame:pro 66 QERDYMTLNLRKLSADVLSGLVFNEQCEVYVSD-AKDEEKKDNSFKTAHEFIQHV----------FQHNKFIKNLSDYLE 134 (517) Q Consensus 66 ~~~~~~~ln~~~~i~~~~A~ll~~e~~~i~~~~-~~~~~~~~~~~~~~~~~l~~~----------l~~n~f~~~~~~~~~ 134 (517) -+.-...-+.....++..|+-+.+=+..+.... ...........+...++|... +....+...+..++. T Consensus 1 l~~l~~~n~~v~~ci~~ia~~ia~~p~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~pn~~~~~~~~~~~t~~~~~~~~~~ 80 (467) T protein:vir:31 1 MAELLEHNETHAKCVHAKSRYVAGFGINIIPHPEAEDPDRDGEQYERVWDFWFGDDSNWQVGPMESERATATNVLQTAWT 80 (467) T ss_pred ChhhhhcCHHHHHHHHHHHHhhhcCCeEEEEccCcccccchhhhhhhHHHHhhccCCCccccchhhHhhHHHHHHHHHHH Confidence 000001112334445555555544444432211 111000001111111111110 001123345566778 Q ss_pred HHHhhCCEEEEEEEeC-Ce-eEEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEE Q lcl|Aclame:pro 135 PTFALGGLTVRPYVDN-GE-IEFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYV 212 (517) Q Consensus 135 ~a~~~G~~~~k~~~d~-g~-~~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~ 212 (517) +.+..|.+++.+..+. |+ +.+..++|+.+-+. .+..+.. ...+....+|-... ........+.+. T Consensus 81 ~l~l~Gn~~i~~~r~~~G~~~~l~~l~~~~v~~~-~d~~~~~---------~~~~~~~~~~~~~~---~~~~~~~~~~~~ 147 (467) T protein:vir:31 81 DYEAIGWLTIEILTQTDGTPTGLAYVPGHTIRKR-MDERGFV---------QLLEEKEKYFGVAG---DRYQTNGNGDLD 147 (467) T ss_pred HHHhcCCeEEEEEECCCCcEEEEEEeCCceeEee-eecceeE---------eecCCceeeEEecc---ccceeeccccee Confidence 8888999999888774 54 46888888887764 2322211 11112222221100 000000000000 Q ss_pred EEEEEeecCCccccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHH Q lcl|Aclame:pro 213 ITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQF 292 (517) Q Consensus 213 I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~ 292 (517) .. .+. ......|..+ .+ +.--++||+.+.+ .+..+|+|.+..+...+.. +.....+ T Consensus 148 ~~--~~~-~~~~~~~~~~-------------~~---~~~diih~r~~~~----~~~~~G~s~~~~~~~~i~~-~~~~~~~ 203 (467) T protein:vir:31 148 PV--FVD-ADDGSTGTSV-------------SN---PANELIFKRNHSP----LYPHYGAPDIIPAVKTIRG-DSAAQDY 203 (467) T ss_pred ee--eee-ecccccccee-------------Ee---ccccEEEecCCCC----CCCcccccHHHHHHHHHHH-HHHHHHH Confidence 00 000 0000011111 11 1112456765422 2345799999888777754 4555555 Q ss_pred HHH-HHhcc-ce--eecchHHhccCCCCcccccCccCCcc-----------------cceeeeecCCCC--CCcceEE-- Q lcl|Aclame:pro 293 WWE-IKMGQ-RT--VFVSDVMLRTVPDESGMPPPQVFDPD-----------------VNVYKSIRMGTD--EEFVKDV-- 347 (517) Q Consensus 293 ~~e-~~~~~-~~--i~v~~~~l~~~~~~~~~~~~~~fd~~-----------------~~~y~~~~~~~~--~~~v~~~-- 347 (517) ... |+.|. +. +.++..++.... .......|... ......+.++.+ ..+++.. T Consensus 204 ~~~~f~ng~~p~gil~~~~~~l~~e~---~~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~~l~~g~~~~~~~~~~~~l 280 (467) T protein:vir:31 204 NIDFFENDGVPRIAIIVKGAELTEKG---REEMRNLIEDNNEDNHRTAFIETEKIVQNEDYLNLADGADRSDVEIRLEPL 280 (467) T ss_pred HHHHHhccCCCceEEEecCcCCCHHH---HHHHHHHHHhhhcchhhhhhhhhcccccccccccccCCCcccccceeEEec Confidence 554 45543 32 233332221100 00000001000 000000111111 1122221 Q ss_pred eccc-ChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 348 THDI-RTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVSENDLT-YRTRNDHVYEVEQFIKGLVISVLELAK 425 (517) Q Consensus 348 ~~di-r~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a~~~~~-~~t~~~~~~~~~~al~~li~~il~~~~ 425 (517) +.-. ...++.+..+...+.|+...|++|..+|+..++. +++.+....... ..++.-+.+.|+.+|... T Consensus 281 s~~~~~d~qf~e~~~~~~~~Ia~~fgVpp~~lG~~~~~~-~~s~~e~~~~~f~~~~l~P~~~~ie~~ln~~--------- 350 (467) T protein:vir:31 281 TVGIDEEASFLEFRGRNEHDILKVHDVPPVIAGVVESGA-FSTDAEEQRKEFAEETIQPKQHDFGELLYEL--------- 350 (467) T ss_pred cccChhhHHHHHHHHHHHHHHHHHhCCCHHHcccCCCCC-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHh--------- Confidence 1112 2345667777778889999999999988754432 222222222111 122222233333333221 Q ss_pred hhhccCC-CCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCCHHHHHHhhCCCC---HHHHHHHHHHHHHhccccCC Q lcl|Aclame:pro 426 TYKLFGG-EIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTVEAIQRIFKVP---KKTAEQWLEEIRKDQIELDP 501 (517) Q Consensus 426 ~~~~~~~-~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~~~l~~~~~~~---eeea~~el~~i~~E~~~~~~ 501 (517) ++.. .....+.|.++++.-...|..+.++....++.+|+++..+++.+. |+. |+....-..-...-+....| T Consensus 351 ---l~~~~~~~~~~~i~f~~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~-Gl~pi~d~~~~~~~~~~~~~~~~~~~ 426 (467) T protein:vir:31 351 ---VHKQGLDAPDWTIEFELAKPDTKLQDVEIASQRVQAMQGLLTVNELRDEF-GFEPFPEEHVYGGETLVAEVTGGSGP 426 (467) T ss_pred ---hcchhhccCCceEEEecchhhccCHHHHHHHHHHHHhCCCcCHHHHHHHh-CCCCCCcccccCCcccccccccccCC Confidence 1111 112345688888888889999999999999999999999977653 442 32110000000000111111 Q ss_pred CCCccccCCCCCCCCC Q lcl|Aclame:pro 502 VTISQRAQKRMFGDEE 517 (517) Q Consensus 502 ~~~~~~~~~~~~G~ee 517 (517) ... ...+....++++ T Consensus 427 ~~~-~~~~~~~~~~~~ 441 (467) T protein:vir:31 427 GGG-IGDQIEQLVEDR 441 (467) T ss_pred CCc-ccCcCCCCCCCc Confidence 111 111111111111 No 172 >protein:vir:189 Length: 424 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:6 # MgeName: HK97 # Cross-refs: genbank:acc:NP_037699;genbank:gi:9634156;genbank:GeneID:1262529 Probab=97.52 E-value=5.2e-05 Score=44.05 Aligned_cols=393 Identities=11% Similarity=0.049 Sum_probs=161.0 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccCh----H Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNL----R 76 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~----~ 76 (517) =||+.++|+||++.... .... -..+. .+ .|..|..|.. +.. +..+.+.. - T Consensus 14 ~g~~~~~~~~f~~~~~~-~~~~-~~~~~------------~~-~~~~~~~~~~--v~~---------~~al~~~~v~~cv 67 (424) T protein:vir:18 14 NGWWARLKSWFVGGRLV-TPNQ-GSQTG------------PV-SAHGYLGDSS--IND---------ERILQISTVWRCV 67 (424) T ss_pred CchHHHHHhhccccccc-cccc-hhhcc------------cc-cccccccccc--ccH---------HHhhccHHHHHHH Confidence 57888888887542111 0000 00000 00 0111222211 000 01111111 1 Q ss_pred HHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhh-hhHHHHHHHHHHHHHhhCCEEEEEEEe-CCe-e Q lcl|Aclame:pro 77 KLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQH-NKFIKNLSDYLEPTFALGGLTVRPYVD-NGE-I 153 (517) Q Consensus 77 ~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~-n~f~~~~~~~~~~a~~~G~~~~k~~~d-~g~-~ 153 (517) ..||+..|++ |..+-=.+.+...........+...|+.--.. ..-..-.+.++.+.+-.|.+++.+..+ .|+ . T Consensus 68 ~~Ia~~iA~l----p~~vy~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~ 143 (424) T protein:vir:18 68 SLISTLTACL----PLDVFETDQNDNRKKVDLSNPLARLLRYSPNQYMTAQEFREAMTMQLCFYGNAYALVDRNSAGDVI 143 (424) T ss_pred HHHHHhhccC----ceEEEEeccCCceeeeccccHHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEE Confidence 4555555544 32221111110000000111122222210000 011122334456777788888877665 344 3 Q ss_pred EEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccc Q lcl|Aclame:pro 154 EFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLE 233 (517) Q Consensus 154 ~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~ 233 (517) .+..++|..+-+. .+.+. ..|+ + .+ + |..+.+ T Consensus 144 ~L~~l~~~~v~v~-~~~~~------------------~~y~---~-------------~~-------~-----g~~~~~- 175 (424) T protein:vir:18 144 SLLPLQSANMDVK-LVGKK------------------VVYR---Y-------------QR-------D-----SEYADF- 175 (424) T ss_pred EEEEecCcceEEE-EcCCe------------------EEEE---E-------------Ee-------C-----CeEEEe- Confidence 4566666666542 22111 1111 0 00 0 000000 Q ss_pred cccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHH-HHHHhc-cceeec--chHH Q lcl|Aclame:pro 234 ELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFW-WEIKMG-QRTVFV--SDVM 309 (517) Q Consensus 234 ~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~-~e~~~~-~~~i~v--~~~~ 309 (517) + +.+ +.||+.+.. +..+|+|.+.-+...|... ....++. +-|+.| ++.-++ |..+ T Consensus 176 --~---~~e----------Vihir~~~~-----dg~~G~spi~~~~~~i~~~-~~~~~~~~~~f~ng~~~~gil~~~~~~ 234 (424) T protein:vir:18 176 --S---QKE----------IFHLKGFGF-----TGLVGLSPIAFACKSAGVA-VAMEDQQRDFFANGAKSPQILSTGEKV 234 (424) T ss_pred --c---ccc----------EEEecCcCC-----CCcccccHHHHHHHHHHHH-HHHHHHHHHHHhccCCcceEEEeCCcC Confidence 0 011 345554321 2356888887776666553 3333443 345544 444333 2222 Q ss_pred hccCCCCcccccCccCCcccceeeeecC-----CCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCc Q lcl|Aclame:pro 310 LRTVPDESGMPPPQVFDPDVNVYKSIRM-----GTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRS 384 (517) Q Consensus 310 l~~~~~~~~~~~~~~fd~~~~~y~~~~~-----~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~ 384 (517) +.. .........|. +.+.+-+. =+++-.++.++......++.+..+...++|+...|++|..+|+...+ T Consensus 235 l~~---e~~~~~~~~~~---~~~~~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~ 308 (424) T protein:vir:18 235 LTE---QQRSQVEENFK---EIAGGPVKKRLWILEAGFSTSAIGVTPQDAEMMASRKFQVSELARFFGVPPHLVGDVEKS 308 (424) T ss_pred CCH---HHHHHHHHHHH---HHhCCcccCCceeccCCceEEecCCChhHHHHHHHHHHhHHHHHHHhCCCHHHhCCCCCc Confidence 110 00000000010 01111000 01222345555555566777877787889999999999999876554 Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHh Q lcl|Aclame:pro 385 MKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKT 464 (517) Q Consensus 385 ~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~ 464 (517) ..+++.+...... .++.+|.-++..|....+. .++.........+.++++.-+..|..+.++...+++. T Consensus 309 t~~~sn~eq~~~~----------f~~~tl~P~~~~ie~~ln~-~L~~~~~~~~~~~~fd~~~llr~d~~~r~~~~~~~~~ 377 (424) T protein:vir:18 309 TSWGSGIEQQNLG----------FLQYTLQPYISRWENSIQR-WLIPSKDVGRLHAEHNLDGLLRGDSASRAAFMKAMGE 377 (424) T ss_pred ccccccHHHHHHH----------HHHHHHHHHHHHHHHHHHh-hcCCccccCCeEEEEechhhhccCHHHHHHHHHHHHh Confidence 4322222222211 2222333333332221111 1222222234557777778788899999999999999 Q ss_pred cCCCCHHHHHHhhCCCCHH-HHHHHHHHHHHhccccCCCC-CccccCCCCCCC Q lcl|Aclame:pro 465 FGFIPTVEAIQRIFKVPKK-TAEQWLEEIRKDQIELDPVT-ISQRAQKRMFGD 515 (517) Q Consensus 465 ~G~~S~~~~l~~~~~~~ee-ea~~el~~i~~E~~~~~~~~-~~~~~~~~~~G~ 515 (517) +|+|+.-++++ ..|+..- ..++-+-. ....|.. .+....+..+|- T Consensus 378 ~G~~T~NE~R~-~~gl~pi~ggD~~~~~-----~n~~~l~~~~~~~~~~~n~a 424 (424) T protein:vir:18 378 SGLRTINEMRR-TDNMPPLPGGDVAMRQ-----AQYVPITDLGTNKEPRNNGA 424 (424) T ss_pred CCCcCHHHHHH-HhCCCCCCCcCeeeec-----cCccchhhhhccCCccccCC Confidence 99999999665 4465431 11111100 0000100 011111111222 No 173 >protein:vir:103765 Length: 549 # NCBI annotation: hypothetical protein # Family: family:all:481 # MgeID: mge:1645 # MgeName: BcepC6B # Cross-refs: genbank:acc:YP_024925;genbank:gi:48697195;genbank:GeneID:2846089 Probab=97.46 E-value=6.3e-05 Score=43.61 Aligned_cols=472 Identities=10% Similarity=0.043 Sum_probs=193.4 Q ss_pred Cc-----hHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccc-ccc----ccCccccc-c Q lcl|Aclame:pro 1 MK-----VIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVE-YIN----SQGKIQER-D 69 (517) Q Consensus 1 m~-----~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~-~~~----~~~~~~~~-~ 69 (517) |+ +.+++|+.+..+. .+-......|+.+|.=..|.+. +.. ....+..+ . T Consensus 1 m~~d~~~~~~~l~~r~~~l~--------------------~~R~~~e~~w~e~~~~~lP~~~~~~~~~~~~~~~~~~~~~ 60 (549) T protein:vir:10 1 MTNDDAKILQALNADHGRMK--------------------EKRQSYEAVWNDVIDYLMPRLDKFGQLPRPDSEKGRERSQ 60 (549) T ss_pred CCcchHHHHHHHHHHHHHHH--------------------HHhhhHHHHHHHHHHHhccccccccccCCCCCCccccccc Confidence 21 1222222111100 1111233456655433222210 000 01111111 1 Q ss_pred ccccChHHHHHHHHhhhhcCCc--ce-----eEecCcccccccccchhHHHHHHH-------HHH--hhhhHHHHHHHHH Q lcl|Aclame:pro 70 YMTLNLRKLSADVLSGLVFNEQ--CE-----VYVSDAKDEEKKDNSFKTAHEFIQ-------HVF--QHNKFIKNLSDYL 133 (517) Q Consensus 70 ~~~ln~~~~i~~~~A~ll~~e~--~~-----i~~~~~~~~~~~~~~~~~~~~~l~-------~~l--~~n~f~~~~~~~~ 133 (517) +..=+.+...++.+|+-|.+-. |. +.++++...+. ....++|+ .++ ..++|...+.++. T Consensus 61 ~~~dstg~~a~~~LAs~l~~~ltpp~~~wF~l~~~~~~~~e~-----~~v~~~l~~ve~~~~~~~~~~~snf~~~~~~~~ 135 (549) T protein:vir:10 61 KMFDSTAPLALRNFVAAMDSMITPATQLWHRLKTGNDALNEI-----ASVKAYLQGVVRTLFAARYRWQGGFVTQMGATY 135 (549) T ss_pred ccccchHHHHHHHHHHHHHhhccCCCCccccccCCccchhhh-----hHHHHHHHHHHHHHHHHHhhhhcChHHHHHHHH Confidence 2222445556666665544331 11 33333322211 12233444 333 3567999999999 Q ss_pred HHHHhhCCEEEEEEEeC-CeeEEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecc-----eeec Q lcl|Aclame:pro 134 EPTFALGGLTVRPYVDN-GEIEFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEK-----TEEG 207 (517) Q Consensus 134 ~~a~~~G~~~~k~~~d~-g~~~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~-----~~~~ 207 (517) .+..++|.+.+.+-.|+ +.+++..+|-.+++- ..|..+....+|.. +..+...-...|- +-+.++. .... T Consensus 136 ~~L~~~Gta~l~~~~~~~~~~~f~~~pl~~~~v-~~d~~G~vd~i~r~-~~~t~~ql~~~fg--~~~l~~~v~~~~~~~~ 211 (549) T protein:vir:10 136 QSIGLFGPGALMIEHDVGKGIVYRNVPMQRLWF-AENNSGLIDKTHVQ-WELTLRQAAQRFG--RENLSPSMQSTLEKDP 211 (549) T ss_pred HHHHhhcceeeEEeecCCCeeEEEEEEcCeEEE-eeCCCCCeEEEEEE-eecCHHHHHHhcC--cccCCHHHHHHhhcCC Confidence 99999999988766664 456788899999884 56666666665532 1111000000000 0000000 0000 Q ss_pred cceEEEEEEEeecCCccc---cCcccccccccCCCCcceE--EcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHH Q lcl|Aclame:pro 208 ESLYVITNELYKSDNEGE---IGKRIPLEELYEGMQEKTY--IQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTL 282 (517) Q Consensus 208 ~~~y~I~n~ly~~~~~~~---lG~~v~l~~~~~~l~~~~~--~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~li 282 (517) +..+.|.|.+|...+.+. -+.-.|...+|-....... ..|+...||+.+ -.+..+++.||+|--..+.+-+ T Consensus 212 ~~~~~v~~~V~pr~~~~~~~~~~~~~pf~sv~~e~~~~~il~esg~~e~P~~~~----Rw~~~~ge~YGrgp~~~~l~D~ 287 (549) T protein:vir:10 212 EKSAIFYHAVEPRADRDPRKLDGRNMQFASYWLDEGRDRIVQNSGFRTFPFAIG----RFYVGTDDVYGGSPAYDAMPDV 287 (549) T ss_pred CceEEEEEEeecCCCCCccccccccCceEEEEEEecCCEeeccCCcccCCccee----eeeecCCCccccchHHHHHHHH Confidence 112223333332111100 0111222222211111111 123333334333 3555668899999999999999 Q ss_pred HHHHHHHHHHHHHH-HhccceeecchHHhccCCCCcccccCccCCcccceeeeecCCCCCCcceEEecccChHHHHHHHH Q lcl|Aclame:pro 283 KKINDTYDQFWWEI-KMGQRTVFVSDVMLRTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAIN 361 (517) Q Consensus 283 d~lD~~~s~~~~e~-~~~~~~i~v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~ 361 (517) +.|+..--....-. ...++...||++...+..+.. + ....|.... ..+...+..+..--+.......++ T Consensus 288 k~L~~l~~~~l~~~~~~~~p~~~v~~~g~~~~~~l~---p------gg~~~~~~~-~~~~~~~~pl~~~~~~~~~~~~i~ 357 (549) T protein:vir:10 288 RMANDMAKTNIRGAQKLVDPPLLANEDGVLDGFDLR---S------GALNWGGLN-DKGEEMVKPLLTGKQAQIGIEFAQ 357 (549) T ss_pred HHHHHHHHHHHHHHHHHhcCceeeccccccccceec---c------CCccccccC-CCCccceeeeccccchhHHHHHHH Confidence 99998776666665 567788888765432211110 0 001111111 112222332222223233333344 Q ss_pred HHHHHHHHHhCCCcccccc-CCCccchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhccCCCCC---- Q lcl|Aclame:pro 362 QALRTLEMELKLSVGTFSF-DGRSMKTATEIVSENDLTYRTRNDHVYEV-EQFIKGLVISVLELAKTYKLFGGEIP---- 435 (517) Q Consensus 362 ~~l~~i~~~~g~s~~~~~~-~~~~~~TAtei~a~~~~~~~t~~~~~~~~-~~al~~li~~il~~~~~~~~~~~~~~---- 435 (517) .+.+.|....= ...|+. .+....|||||....+...+...-.-..+ ...|.-|+.-++.++.-.+.....+. T Consensus 358 ~~~~rI~~af~--~d~~~~~~~~~~~TAtEV~~r~~E~~~~LGpv~~rl~~E~l~Pli~R~~~il~r~g~lP~~p~~l~~ 435 (549) T protein:vir:10 358 DTRQTINQWFY--VTLFQILVDSGDMTATEVLQRAQEKGVLLAPTLGRTQSELLGPMIAREVDILAEAGQLPDMPQELID 435 (549) T ss_pred HHHHHHHHHHh--hhhhhhhcCCCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCChhhhc Confidence 44443333221 111221 13345799999999999888876644444 35566666666665554333222111 Q ss_pred CccceEEEeCCCccCCH-HHHH---HHHHHHHh--cCC-------CCHHHHH---HhhCCC------CHHHHHHHHHHHH Q lcl|Aclame:pro 436 SAEHIGVDFDDGVFQDR-SALL---RFYGQAKT--FGF-------IPTVEAI---QRIFKV------PKKTAEQWLEEIR 493 (517) Q Consensus 436 ~~~~v~i~f~d~i~~d~-~~~~---~~~~~~~~--~G~-------~S~~~~l---~~~~~~------~eeea~~el~~i~ 493 (517) +...+.|++-..+.... ...+ .+.++.+. +++ +....++ ....|+ |++|++++.+.-. T Consensus 436 ~~~~~~i~yis~La~aq~~~~~~~i~~~~~~~~~laq~~Pe~ld~id~d~~~~~~a~~~Gvp~~~irs~eev~~~r~~~~ 515 (549) T protein:vir:10 436 AGADVDVEYDSPLNKAMRAGEGAAILQWLQQLGIVSQFDPAAAKVPNGARIARLLADYGGVPVEAMSTDEELQAQQAAEA 515 (549) T ss_pred CCceeEEEeecHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHhcCCHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHH Confidence 12345566533222210 0111 11112111 111 2233333 234453 3444333221111 Q ss_pred Hhc-----cccCCCCCc--cccCCCCCCCCC Q lcl|Aclame:pro 494 KDQ-----IELDPVTIS--QRAQKRMFGDEE 517 (517) Q Consensus 494 ~E~-----~~~~~~~~~--~~~~~~~~G~ee 517 (517) +.| .++.+...+ .+........-. T Consensus 516 ~qqq~~~~~~~a~~a~~~a~~~~~~~ta~~~ 546 (549) T protein:vir:10 516 QAAQMQQMLAAAPVAAGAIKDLSDAQTAAQT 546 (549) T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcCCCcc Confidence 111 111111110 011111112222 No 174 >protein:vir:100249 Length: 431 # NCBI annotation: gp78 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1619 # MgeName: Bcep176 # Cross-refs: genbank:acc:YP_355414;genbank:gi:77864704;genbank:GeneID:3725971 Probab=97.40 E-value=7.6e-05 Score=43.18 Aligned_cols=399 Identities=10% Similarity=0.013 Sum_probs=156.3 Q ss_pred CchHHHHHHHHHH-HHHHhhcccchhhhccccCcCCHHHHHHHHHH--HHHhcCCCcccccccc----cCcccc-ccccc Q lcl|Aclame:pro 1 MKVIQRIKNFFKR-GGYALSGQTLKSINDHEKINIDPNELARIERN--LRQYEGDYPQVEYINS----QGKIQE-RDYMT 72 (517) Q Consensus 1 m~~~~~ik~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~--~~~Y~g~~~~~~~~~~----~~~~~~-~~~~~ 72 (517) ||||+++|+.=.. .......++ ...++.. -.-| +.|+....+++..+.. .|.... ...+. T Consensus 1 Mgl~d~~r~~~~~~~~~~~~~~~--------~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~v~~~~al~ 68 (431) T protein:vir:10 1 MGLFDFIRREKQPEAQARPHVEP--------SFQASTP----TTSIPGETFEGLDDPRLKEYIRRGELNGGTGRETRALR 68 (431) T ss_pred CcchhhhhcCccccccccccccc--------ccccccc----cccccccccccccchHHHHhhccCccCcceechhhhhc Confidence 9999887652110 001111111 0111100 0001 0111111111110000 010000 11111 Q ss_pred cChH----HHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHH-HHhhhhHHHHHHHHHHHHHhhCCEEEEEE Q lcl|Aclame:pro 73 LNLR----KLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQH-VFQHNKFIKNLSDYLEPTFALGGLTVRPY 147 (517) Q Consensus 73 ln~~----~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~-~l~~n~f~~~~~~~~~~a~~~G~~~~k~~ 147 (517) ...- +.||+..|+| |..+.=.+. ..+ ......+...|+. --....-..-...++.+.+-.|.+++.+. T Consensus 69 ~~~V~~ci~~Ia~~iA~l----p~~v~~~~~-~~~--~~~~~~~~~lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~ 141 (431) T protein:vir:10 69 NMAVLRCVTLISGTIGML----PMNLISSDD-SKQ--VLTDDPAHRLLKYKPNDWQTPMEFKSLMQLRALLDGESMARIV 141 (431) T ss_pred cHHHHHHHHHHHHhhccC----ceEEEEecC-cee--eeccchHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEE Confidence 1111 4556666654 333211110 000 1111223333321 00000111223344566677788888888 Q ss_pred EeCCee-EEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCcccc Q lcl|Aclame:pro 148 VDNGEI-EFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEI 226 (517) Q Consensus 148 ~d~g~~-~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~l 226 (517) .|.|.+ .+-.++|+.+-+...+++ ..+|+ + ...+ T Consensus 142 r~~g~~~~L~pl~~~~v~~~~~~~~------------------~~~y~------------------~-----~~~~---- 176 (431) T protein:vir:10 142 WSGNRPIRLIPMDRGSAKGRLTSTW------------------QIVYD------------------Y-----TTPT---- 176 (431) T ss_pred EcCCceEEEEEEcCceeEEEEcCCC------------------eEEEE------------------E-----EeCC---- Confidence 876653 344555665554321111 11111 0 0000 Q ss_pred CcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHH-HHhc-cceee Q lcl|Aclame:pro 227 GKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWE-IKMG-QRTVF 304 (517) Q Consensus 227 G~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e-~~~~-~~~i~ 304 (517) |..+.+. +.+ +.||+.+.. +..+|+|.+.-+...|.-. ....++... |+.| ++.-+ T Consensus 177 g~~~~~~------~~d----------ViHir~~~~-----dg~~G~spi~~~~~~i~~~-~~~~~~~~~~f~ng~~p~gi 234 (431) T protein:vir:10 177 GDKIELP------ARE----------VFHLRDLSI-----DGVSGVSRVKLSGNALELA-EQAERAASRTFRTGVMAGGA 234 (431) T ss_pred ceEEEEc------hhh----------EEEecCcCC-----CCcccccHHHHHHHHHHHH-HHHHHHHHHHHhccCCccEE Confidence 1111100 001 345554322 2356999888777777543 444555444 4544 33333 Q ss_pred cchHHhccCCCCccc---ccCccCCcccceeeeecC------CCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCc Q lcl|Aclame:pro 305 VSDVMLRTVPDESGM---PPPQVFDPDVNVYKSIRM------GTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSV 375 (517) Q Consensus 305 v~~~~l~~~~~~~~~---~~~~~fd~~~~~y~~~~~------~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~ 375 (517) + +....-... .....|. ..|.+.+. =+++-.++.++......++.+..+...++|+...|++| T Consensus 235 l-----~~~~~ls~e~~~~~~~~~~---~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~le~r~~~~~~Ia~~fgVPp 306 (431) T protein:vir:10 235 I-----EVPKELSDNAYGRMKASVQ---ENHTGSENAGSWMLLEEGATAKQFSNTAASAQQIENRNHQIEEVARMYGVPR 306 (431) T ss_pred E-----ecCCCCCHHHHHHHHHHHH---HHhcCccccCCceecCCCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCH Confidence 2 221111110 0000110 01111110 01222344455555566777777777889999999999 Q ss_pred cccccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHH Q lcl|Aclame:pro 376 GTFSFDGRSMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSAL 455 (517) Q Consensus 376 ~~~~~~~~~~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~ 455 (517) ..++...++..+ .+.... ...++.+|..++..|..-.+. .++.........+.++++.-+..|..+. T Consensus 307 ~~lg~~~~~t~s--n~eq~~----------~~f~~~tL~P~~~~ie~~ln~-~Ll~~~~~~~~~~~fd~~~llr~d~~~r 373 (431) T protein:vir:10 307 PLLMMDDTSWGS--GIEQLA----------IFFIQYGLSHWFVSWEQAAAR-AFLPEKMLGQRQFKFNEGALLRGTLNDQ 373 (431) T ss_pred HHhCCCCCCccc--cHHHHH----------HHHHHHHHHHHHHHHHHHHHh-hccChhhcCCceEEEechhhhccCHHHH Confidence 999876543222 121111 112222333333322221110 1222111223456777777677898888 Q ss_pred HHHHHHHHhcCC----CCHHHHHHhhCCC---CHHHHHHHHHHHHHhccccCCCCCccccCCCCC Q lcl|Aclame:pro 456 LRFYGQAKTFGF----IPTVEAIQRIFKV---PKKTAEQWLEEIRKDQIELDPVTISQRAQKRMF 513 (517) Q Consensus 456 ~~~~~~~~~~G~----~S~~~~l~~~~~~---~eeea~~el~~i~~E~~~~~~~~~~~~~~~~~~ 513 (517) ++...+++.+|+ |+.-++++. .|+ .++..++-..-. + ..+.+.+.. .+... T Consensus 374 ~~~~~~~~~~G~~~g~lT~NE~R~~-~gl~p~~~~~gD~~~~p~---n--~~~~~~~~~-~p~~~ 431 (431) T protein:vir:10 374 AAFFSKALGAGGQSPWMKQNEVREM-LDLPRADDPVADQLRNPM---T--QKQKGSGDE-PPATT 431 (431) T ss_pred HHHHHHHHhcccccCccCHHHHHHH-hCCCCCCCccccceeccc---c--cccCCCCCC-CCCCC Confidence 888888887765 788776543 343 232232211000 0 000000000 01111 No 175 >protein:vir:81095 Length: 416 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1891 # MgeName: tp310-1 # Cross-refs: genbank:acc:YP_001429872;genbank:gi:156603925;genbank:GeneID:5525315 Probab=97.38 E-value=8.1e-05 Score=43.00 Aligned_cols=393 Identities=12% Similarity=0.069 Sum_probs=158.6 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccChHHHHH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLRKLSA 80 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~~~i~ 80 (517) ||||.+.+ ++.. .. +. ......+..--. +.|.... ......-.+..... .--..|| T Consensus 1 Mg~f~~~~---~r~~-----------~~-~~----~~~~~~~~~~~~-~~~~~~~--~~~~~~al~~~~v~--~cv~~Ia 56 (416) T protein:vir:81 1 MGIFYKNE---KRDL-----------QY-NE----DDLQMMVQTLPG-FQGTKLR--QYKDIEAIRHSDIF--TAVMMIA 56 (416) T ss_pred CCcccccc---cccc-----------cC-CC----cchhHHHHHhcc-ccccCcc--ccchhhhhcchHHH--HHHHHHH Confidence 99985432 1100 00 00 000111110000 0111000 00000000000000 0114566 Q ss_pred HHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhh---HHHHHHHHHHHHHhhCCEEEEEEEe-CCee-EE Q lcl|Aclame:pro 81 DVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNK---FIKNLSDYLEPTFALGGLTVRPYVD-NGEI-EF 155 (517) Q Consensus 81 ~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~---f~~~~~~~~~~a~~~G~~~~k~~~d-~g~~-~i 155 (517) +.+|++ |..+.-++.. .....+...|+. .-|. ...-.+..+...+-.|.+++.+..+ +|.+ .+ T Consensus 57 ~~iA~~----p~~~~~~~~~------~~~~~~~~lL~~--~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L 124 (416) T protein:vir:81 57 SDLARM----PIRVTVNGQI------NYSDRIVNLLNT--RPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNL 124 (416) T ss_pred HhhccC----ceEEecCccc------cccchHHHHHhc--ccccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEE Confidence 666654 3222211110 011112222211 0111 1122334455566778888877776 4554 57 Q ss_pred EEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccc Q lcl|Aclame:pro 156 SWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEEL 235 (517) Q Consensus 156 ~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~ 235 (517) ..++|+.+-++. +.++... +.+...... +. ... ..| + T Consensus 125 ~~i~~~~v~v~~-~~~g~~~----~~~~~~~~~--------------------~~-~~~-~~~------------~---- 161 (416) T protein:vir:81 125 TFRKTSEIELKS-DARGRLY----YFHQRIDSN--------------------GN-NIE-RNV------------K---- 161 (416) T ss_pred EEEcCceeEEEE-CCCccEE----EEEEEecCC--------------------Cc-eeE-EEE------------c---- Confidence 778888877643 3222210 000000000 00 000 001 0 Q ss_pred cCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHH-HHhc-cceeec--chHHhc Q lcl|Aclame:pro 236 YEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWE-IKMG-QRTVFV--SDVMLR 311 (517) Q Consensus 236 ~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e-~~~~-~~~i~v--~~~~l~ 311 (517) +.+ +.||+.+ + .+..+|+|.+.-+...++.. .....+... |+.| .+..++ |..+.. T Consensus 162 ----~~e----------vihir~~---~--~d~~~G~s~i~~~~~~i~~~-~~~~~~~~~~f~ng~~~~gil~~~~~~~~ 221 (416) T protein:vir:81 162 ----FED----------MLDIKFY---S--LDGINGLSLLDTLSRTIESD-NNGKDFLNNFLRNGTHAGGILKMKGVLDN 221 (416) T ss_pred ----ccc----------EEEeccC---C--CCCccccCHHHHHHHHHHHH-HHHHHHHHHHHhccCCCcEEEEeCCCCCC Confidence 001 2345432 1 12357999988888777654 334444444 4544 444433 211110 Q ss_pred cCCCCcccccCccCCcccceeeeec------CCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCcc Q lcl|Aclame:pro 312 TVPDESGMPPPQVFDPDVNVYKSIR------MGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSM 385 (517) Q Consensus 312 ~~~~~~~~~~~~~fd~~~~~y~~~~------~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~ 385 (517) +.........|.. .|.+.. .=+++..++.++...+..++.+......+.|+...|++|..+|.+..+. T Consensus 222 ---~~~~~~~~~~~~~---~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~ 295 (416) T protein:vir:81 222 ---KKARDRAREEFHK---SFSGTKQAGKVVVLDESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIETANM 295 (416) T ss_pred ---HHHHHHHHHHHHH---HhcCccccCceeecCCCceeEeccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCCc Confidence 0000000011110 111110 0022334555555556667888888888899999999999998654332 Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhc Q lcl|Aclame:pro 386 KTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTF 465 (517) Q Consensus 386 ~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~ 465 (517) +.++.... ...++.-+...++.+|... ++.. .....+.++++.-...|..+.++....++.+ T Consensus 296 -~~~~~~~~---~~~~l~P~~~~ie~~ln~~------------l~~~--~~~~~~~f~~~~l~~~D~~~~~~~~~~~~~~ 357 (416) T protein:vir:81 296 -SITDANLD---YLSTLKPYITCVCAELNFK------------FNDE--YVNREFKFDTTEIRVVDEKTQAEIDKINIDS 357 (416) T ss_pred -cHHHHHHH---HHHHHHHHHHHHHHHHhhh------------cccc--ccCceEEEechhhhccCHHHHHHHHHHHHhC Confidence 11222111 1122222222222222221 2111 1245677777776777999999999999999 Q ss_pred CCCCHHHHHHhhCCCCHHH-HHHHHHHHH-----HhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 466 GFIPTVEAIQRIFKVPKKT-AEQWLEEIR-----KDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 466 G~~S~~~~l~~~~~~~eee-a~~el~~i~-----~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) |+|+.-+++..+ |+..-+ -.+.+-.+. .+....-+..-.......+-|+|| T Consensus 358 G~~T~NE~R~~~-gl~p~~~gd~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~kgGe~ 414 (416) T protein:vir:81 358 GKMNIDEIRQRD-GLAPIPGGNGSIHRVDLNHVNIELVDEYQMNKSRATDKKLKGGEE 414 (416) T ss_pred CCcCHHHHHHHh-CCCCCCCCCcceEeecccccccccccccCcccccccccccCCCCC Confidence 999999966543 543211 111111110 011100000000111122335555 No 176 >protein:vir:4598 Length: 416 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:101 # MgeName: PVL # Cross-refs: genbank:acc:NP_058443;genbank:gi:9635169;genbank:GeneID:1262702 Probab=97.38 E-value=8.1e-05 Score=43.00 Aligned_cols=393 Identities=12% Similarity=0.069 Sum_probs=158.6 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccChHHHHH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLRKLSA 80 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~~~i~ 80 (517) ||||.+.+ ++.. .. +. ......+..--. +.|.... ......-.+..... .--..|| T Consensus 1 Mg~f~~~~---~r~~-----------~~-~~----~~~~~~~~~~~~-~~~~~~~--~~~~~~al~~~~v~--~cv~~Ia 56 (416) T protein:vir:45 1 MGIFYKNE---KRDL-----------QY-NE----DDLQMMVQTLPG-FQGTKLR--QYKDIEAIRHSDIF--TAVMMIA 56 (416) T ss_pred CCcccccc---cccc-----------cC-CC----cchhHHHHHhcc-ccccCcc--ccchhhhhcchHHH--HHHHHHH Confidence 99985432 1100 00 00 000111110000 0111000 00000000000000 0114566 Q ss_pred HHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhh---HHHHHHHHHHHHHhhCCEEEEEEEe-CCee-EE Q lcl|Aclame:pro 81 DVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNK---FIKNLSDYLEPTFALGGLTVRPYVD-NGEI-EF 155 (517) Q Consensus 81 ~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~---f~~~~~~~~~~a~~~G~~~~k~~~d-~g~~-~i 155 (517) +.+|++ |..+.-++.. .....+...|+. .-|. ...-.+..+...+-.|.+++.+..+ +|.+ .+ T Consensus 57 ~~iA~~----p~~~~~~~~~------~~~~~~~~lL~~--~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L 124 (416) T protein:vir:45 57 SDLARM----PIRVTVNGQI------NYSDRIVNLLNT--RPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNL 124 (416) T ss_pred HhhccC----ceEEecCccc------cccchHHHHHhc--ccccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEE Confidence 666654 3222211110 011112222211 0111 1122334455566778888877776 4554 57 Q ss_pred EEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccc Q lcl|Aclame:pro 156 SWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEEL 235 (517) Q Consensus 156 ~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~ 235 (517) ..++|+.+-++. +.++... +.+...... +. ... ..| + T Consensus 125 ~~i~~~~v~v~~-~~~g~~~----~~~~~~~~~--------------------~~-~~~-~~~------------~---- 161 (416) T protein:vir:45 125 TFRKTSEIELKS-DARGRLY----YFHQRIDSN--------------------GN-NIE-RNV------------K---- 161 (416) T ss_pred EEEcCceeEEEE-CCCccEE----EEEEEecCC--------------------Cc-eeE-EEE------------c---- Confidence 778888877643 3222210 000000000 00 000 001 0 Q ss_pred cCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHH-HHhc-cceeec--chHHhc Q lcl|Aclame:pro 236 YEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWE-IKMG-QRTVFV--SDVMLR 311 (517) Q Consensus 236 ~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e-~~~~-~~~i~v--~~~~l~ 311 (517) +.+ +.||+.+ + .+..+|+|.+.-+...++.. .....+... |+.| .+..++ |..+.. T Consensus 162 ----~~e----------vihir~~---~--~d~~~G~s~i~~~~~~i~~~-~~~~~~~~~~f~ng~~~~gil~~~~~~~~ 221 (416) T protein:vir:45 162 ----FED----------MLDIKFY---S--LDGINGLSLLDTLSRTIESD-NNGKDFLNNFLRNGTHAGGILKMKGVLDN 221 (416) T ss_pred ----ccc----------EEEeccC---C--CCCccccCHHHHHHHHHHHH-HHHHHHHHHHHhccCCCcEEEEeCCCCCC Confidence 001 2345432 1 12357999988888777654 334444444 4544 444433 211110 Q ss_pred cCCCCcccccCccCCcccceeeeec------CCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCcc Q lcl|Aclame:pro 312 TVPDESGMPPPQVFDPDVNVYKSIR------MGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSM 385 (517) Q Consensus 312 ~~~~~~~~~~~~~fd~~~~~y~~~~------~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~ 385 (517) +.........|.. .|.+.. .=+++..++.++...+..++.+......+.|+...|++|..+|.+..+. T Consensus 222 ---~~~~~~~~~~~~~---~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~ 295 (416) T protein:vir:45 222 ---KKARDRAREEFHK---SFSGTKQAGKVVVLDESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIETANM 295 (416) T ss_pred ---HHHHHHHHHHHHH---HhcCccccCceeecCCCceeEeccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCCc Confidence 0000000011110 111110 0022334555555556667888888888899999999999998654332 Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhc Q lcl|Aclame:pro 386 KTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTF 465 (517) Q Consensus 386 ~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~ 465 (517) +.++.... ...++.-+...++.+|... ++.. .....+.++++.-...|..+.++....++.+ T Consensus 296 -~~~~~~~~---~~~~l~P~~~~ie~~ln~~------------l~~~--~~~~~~~f~~~~l~~~D~~~~~~~~~~~~~~ 357 (416) T protein:vir:45 296 -SITDANLD---YLSTLKPYITCVCAELNFK------------FNDE--YVNREFKFDTTEIRVVDEKTQAEIDKINIDS 357 (416) T ss_pred -cHHHHHHH---HHHHHHHHHHHHHHHHhhh------------cccc--ccCceEEEechhhhccCHHHHHHHHHHHHhC Confidence 11222111 1122222222222222221 2111 1245677777776777999999999999999 Q ss_pred CCCCHHHHHHhhCCCCHHH-HHHHHHHHH-----HhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 466 GFIPTVEAIQRIFKVPKKT-AEQWLEEIR-----KDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 466 G~~S~~~~l~~~~~~~eee-a~~el~~i~-----~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) |+|+.-+++..+ |+..-+ -.+.+-.+. .+....-+..-.......+-|+|| T Consensus 358 G~~T~NE~R~~~-gl~p~~~gd~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~kgGe~ 414 (416) T protein:vir:45 358 GKMNIDEIRQRD-GLAPIPGGNGSIHRVDLNHVNIELVDEYQMNKSRATDKKLKGGEE 414 (416) T ss_pred CCcCHHHHHHHh-CCCCCCCCCcceEeecccccccccccccCcccccccccccCCCCC Confidence 999999966543 543211 111111110 011100000000111122335555 No 177 >protein:vir:1884 Length: 424 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:41 # MgeName: HK022 # Cross-refs: genbank:acc:NP_037664;genbank:gi:9634122;genbank:GeneID:1262519 Probab=97.35 E-value=8.7e-05 Score=42.86 Aligned_cols=393 Identities=11% Similarity=0.065 Sum_probs=161.2 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccC----hH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLN----LR 76 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln----~~ 76 (517) =|||.++|+||.........+. ..+. + + + +..++.|.. +. .+..+.+. -- T Consensus 14 ~g~~~~~~~~~~~~~~~~~~~~--~~~~-~-~--~---------~~~~~~~~~--v~---------~~~al~~~~v~~cv 67 (424) T protein:vir:18 14 NGWWARLQSWFVGGRLVTPNQG--SQTG-P-V--S---------AHGHLGDSS--IN---------DERILQISTVWRCV 67 (424) T ss_pred CchHHHHHhhhccccccccccc--cccc-c-c--c---------ccccccccc--cc---------HHHhhccHHHHHHH Confidence 6888888888853221111000 0000 0 0 0 001111110 00 00001111 11 Q ss_pred HHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHh-hhhHHHHHHHHHHHHHhhCCEEEEEEEeC-Cee- Q lcl|Aclame:pro 77 KLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQ-HNKFIKNLSDYLEPTFALGGLTVRPYVDN-GEI- 153 (517) Q Consensus 77 ~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~-~n~f~~~~~~~~~~a~~~G~~~~k~~~d~-g~~- 153 (517) ..||+..|++ |..+-=.+.+...........+...|+.--. ...-..-....+.+.+-.|.+++.+..+. |++ T Consensus 68 ~~Ia~~iA~l----p~~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~ 143 (424) T protein:vir:18 68 SLISTLTACL----PLDVFETDQNDNRKKVDLSNPLARLLRYSPNQYMTAQEFREAMTMQLCFYGNAYALVDRNSAGDVI 143 (424) T ss_pred HHHHHhhccC----ceEEEEeecCCceeeeccccHHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEE Confidence 3455555544 2221101110000000001112222211000 00111223344556677788888877663 443 Q ss_pred EEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccc Q lcl|Aclame:pro 154 EFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLE 233 (517) Q Consensus 154 ~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~ 233 (517) .+..++|+.+-+. .+.+. ..|+ + .+ + |..+. T Consensus 144 ~L~pl~~~~V~v~-~~~~~------------------~~y~---~-------------~~-------~-----g~~~~-- 174 (424) T protein:vir:18 144 SLLPLQSANMDVK-LVGKK------------------VVYR---Y-------------QR-------D-----SEYAD-- 174 (424) T ss_pred EEEEecCcceEEE-EcCCe------------------EEEE---E-------------Ee-------C-----CeEEE-- Confidence 4666677766542 22211 1111 0 00 0 00000 Q ss_pred cccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHH-HHhc-cceeec--chHH Q lcl|Aclame:pro 234 ELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWE-IKMG-QRTVFV--SDVM 309 (517) Q Consensus 234 ~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e-~~~~-~~~i~v--~~~~ 309 (517) ++ +.+ +.|||.+.. +..+|+|-+.-+...++.. ....++... |+.| ++.-++ |..+ T Consensus 175 -~~---~~e----------Iih~r~~~~-----dg~~G~spi~~~~~~i~~~-~a~~~~~~~~f~ng~~p~gil~~~~~~ 234 (424) T protein:vir:18 175 -FS---QKE----------IFHLKGFGF-----TGLVGLSPIAFACKSAGVA-VAMEDQQRDFFANGAKSPQILSTGEKV 234 (424) T ss_pred -ec---ccc----------EEEecCcCC-----CCcccccHHHHHHHHHHHH-HHHHHHHHHHHHccCCcceEEEeCCcC Confidence 00 011 345553321 2357999887777776543 444444443 4544 454443 2222 Q ss_pred hccCCCCcccccCccCCcccceeeeecC-----CCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCc Q lcl|Aclame:pro 310 LRTVPDESGMPPPQVFDPDVNVYKSIRM-----GTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRS 384 (517) Q Consensus 310 l~~~~~~~~~~~~~~fd~~~~~y~~~~~-----~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~ 384 (517) +.. .........|. +.+.+-+. =+++-.++.++......++.+..+...++|+...|++|..+|+...+ T Consensus 235 l~~---e~~~~~~~~~~---~~~~g~nag~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~ 308 (424) T protein:vir:18 235 LTE---QQRSQVEENFK---EIAGGPVKKRLWILEAGFSTSAIGVTPQDAEMMASRKFQVSELARFFGVPPHLVGDVEKS 308 (424) T ss_pred CCH---HHHHHHHHHHH---HHhCCcccCCceeccCCceEEecCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCc Confidence 110 00000000010 01111000 01223455555555667788888888889999999999999876544 Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHh Q lcl|Aclame:pro 385 MKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKT 464 (517) Q Consensus 385 ~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~ 464 (517) ..+++.+....... ++.+|..++..|....+. .++.........+.++++.-+..|..+.++...+++. T Consensus 309 t~~~sn~eq~~~~f----------~~~tl~P~~~~ie~~l~~-~L~~~~~~~~~~~~fd~~~llr~d~~~r~~~~~~~~~ 377 (424) T protein:vir:18 309 TSWGSGIEQQNLGF----------LQYTLQPYISRWENSIQR-WLIPAKDVGRIHAEHNLDGLLRGDSASRAAFMKAMGE 377 (424) T ss_pred ccccccHHHHHHHH----------HHHHHHHHHHHHHHHHHh-hcCCccccCCeEEEEechhhhccCHHHHHHHHHHHHh Confidence 33222222222111 222333333333221111 1222222233457777777778899999999999999 Q ss_pred cCCCCHHHHHHhhCCCCHH-HHHHHHHHHHHhccccCCCC-CccccCCCCCCC Q lcl|Aclame:pro 465 FGFIPTVEAIQRIFKVPKK-TAEQWLEEIRKDQIELDPVT-ISQRAQKRMFGD 515 (517) Q Consensus 465 ~G~~S~~~~l~~~~~~~ee-ea~~el~~i~~E~~~~~~~~-~~~~~~~~~~G~ 515 (517) +|+|+.-++++ ..|+..- ..++-+. +....|.. .++...+..+|- T Consensus 378 ~G~~T~NE~R~-~~gl~pi~gGD~~~~-----~~n~~~l~~~~~~~~p~~~ga 424 (424) T protein:vir:18 378 AGLRTINEMRR-TDNLPPLPGGDVAMR-----QSQYVPITDLGTNKEPRNNGA 424 (424) T ss_pred CCCcCHHHHHH-HhCCCCCCCcCeeee-----ccCccchHhhhccCCCccCCC Confidence 99999998665 3455431 1111110 00000000 001111111122 No 178 >protein:vir:80796 Length: 574 # NCBI annotation: putative portal protein # Family: family:all:2446 # MgeID: mge:1885 # MgeName: phiEF24C # Cross-refs: genbank:acc:YP_001504121;genbank:gi:158079308;genbank:GeneID:5666445 Probab=97.34 E-value=9e-05 Score=42.77 Aligned_cols=441 Identities=9% Similarity=0.031 Sum_probs=163.1 Q ss_pred CchHH-HHHHHHHHHHHHhhcccchhhhccccCcCCH-H-HHHHHHHHHHHhcCCCcccc-----------cccccCccc Q lcl|Aclame:pro 1 MKVIQ-RIKNFFKRGGYALSGQTLKSINDHEKINIDP-N-ELARIERNLRQYEGDYPQVE-----------YINSQGKIQ 66 (517) Q Consensus 1 m~~~~-~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~-~~~~i~~~~~~Y~g~~~~~~-----------~~~~~~~~~ 66 (517) +|+=. .|-.|.+..-+.|+.+..++-.-+. .+.. + ...+++.-..-|...+.... +++...-.. T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (574) T protein:vir:80 9 LGIEKSSIEETRNMENYKMHLREIDTNVVNN--EPYSMESIEKGMNGKTTAYMQPIIGEMSVNPGYKTKPSIRNSQDLHK 86 (574) T ss_pred hccchhhHHHHHhhhhhccccchhhhhhhhc--cCCCHHHHHHhHhhhcccccchhhhhccccccccCcCccCCcccHHH Confidence 33321 2333333333445555433221111 1111 1 11111111111211111100 000000000 Q ss_pred c-ccccccChHHHHHHHHhhhhc-------CC----cceeEecCcccccccccchhHHHHHHHHHHhh---------hhH Q lcl|Aclame:pro 67 E-RDYMTLNLRKLSADVLSGLVF-------NE----QCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQH---------NKF 125 (517) Q Consensus 67 ~-~~~~~ln~~~~i~~~~A~ll~-------~e----~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~---------n~f 125 (517) . +....-++..++....++.+. .- +-.|-..+..... ..........|..++.+ ..| T Consensus 87 ~l~~~~~~~iv~~~i~~~~~~V~~~~~~i~~~ia~lp~~i~~kd~~~~~--~~~~~~~~~~l~~ll~~~~~~~nP~~~s~ 164 (574) T protein:vir:80 87 TLKKFGNNIILNAIINTRSNQVSMYCKPARNSETGVGYEIRLKDIEAEP--TSHDIANIKRIESFLENTAQFRDPNRDNF 164 (574) T ss_pred HHHhhccChhHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEeccCCCc--cchhhhhhhHHHHHHhccCCCCCCccccH Confidence 0 000011112222222222111 11 1122111111000 00011112233333321 123 Q ss_pred HHHHHHHHHHHHhhCCEEEEEEEe-CCee-EEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecc Q lcl|Aclame:pro 126 IKNLSDYLEPTFALGGLTVRPYVD-NGEI-EFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEK 203 (517) Q Consensus 126 ~~~~~~~~~~a~~~G~~~~k~~~d-~g~~-~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~ 203 (517) ..-+..++.+.+..|.+++.+..+ .|++ .+..++|..+.+.....+... .++..||. ... T Consensus 165 ~ef~~~lv~~lll~Gnayi~i~r~~~G~~~~L~pl~p~~V~v~~d~~~~~~------------~~~~~y~~-----~~~- 226 (574) T protein:vir:80 165 TTFCKKLVRATYMYDQVNFEKVFDKDGNFIKFDTVDPTTIFLATNGEGKLI------------KNGERFVQ-----VID- 226 (574) T ss_pred HHHHHHHHHHHHhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCccccc------------cCceEEEE-----EeC- Confidence 445556677778889998887776 3553 467788888777422211110 01111111 000 Q ss_pred eeeccceEEEEEEEeecCCccccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHH Q lcl|Aclame:pro 204 TEEGESLYVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLK 283 (517) Q Consensus 204 ~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid 283 (517) +. ..+. ++ +.+ ++||+.+ ++......++|+|.+.-+...|. T Consensus 227 -----g~-----------------~~~~---~~---~~e----------iih~~~~-~~~~~~~~~~G~spi~~a~~~i~ 267 (574) T protein:vir:80 227 -----NR-----------------IVAK---FN---ERE----------LAFAVRN-PRADIEVGQYGYPELEIALKQFI 267 (574) T ss_pred -----Cc-----------------eEEE---Ec---ccc----------EEEEecc-CCCCcccccccccHHHHHHHHHH Confidence 00 0000 00 001 2344321 11122245689999988888777 Q ss_pred HHHHHHHHHHHHHHhc-cceee--cchHH-hccCCCCcccccCccCCcccceeeeec-------CCCCCCcceEEecccC Q lcl|Aclame:pro 284 KINDTYDQFWWEIKMG-QRTVF--VSDVM-LRTVPDESGMPPPQVFDPDVNVYKSIR-------MGTDEEFVKDVTHDIR 352 (517) Q Consensus 284 ~lD~~~s~~~~e~~~~-~~~i~--v~~~~-l~~~~~~~~~~~~~~fd~~~~~y~~~~-------~~~~~~~v~~~~~dir 352 (517) ....+-.-..+-|+.| .++-+ ++... +. +..-......|. ..|.+.. ...++-.++.++.... T Consensus 268 ~~~~a~~~~~~~f~ng~~p~gil~~~~~~~ls---~e~~~~lk~~~~---~~~~G~~n~g~~~vl~~~G~~~~~l~~s~~ 341 (574) T protein:vir:80 268 AHENTEVFNDRFFSHGGTTRGILHVKTGQQQS---QQALDIFRREWR---SSLAGINGSWQIPVVSAEDVKFVNMTPSAN 341 (574) T ss_pred HHHHHHHHHHHHHhccCCCceEEEeCCCCCCC---HHHHHHHHHHHH---HHhccccccccceeecCCCceEEEccCChh Confidence 6655444444455654 34422 22100 00 000000000110 0121111 1122333444555556 Q ss_pred hHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhccC Q lcl|Aclame:pro 353 TEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVSENDLTYRTRN-DHVYEVEQFIKGLVISVLELAKTYKLFG 431 (517) Q Consensus 353 ~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a~~~~~~~t~~-~~~~~~~~al~~li~~il~~~~~~~~~~ 431 (517) ..++.+..+...+.|+...|++|..+|+...+..+++.+.+.+ +.++. .....++.+|.-++..|....+. .++. T Consensus 342 D~qfle~~~~~~~~Ia~afgVPp~~lG~~~~~t~~gs~~~~~n---~sn~E~~~~~f~~~tL~P~~~~ie~~ln~-~Ll~ 417 (574) T protein:vir:80 342 DMQFEKWLNYLINVISALYGIDPAEINFPNNGGATGSKGGSLN---EGNSKEKMQASQNKGLQPLLRFIEDTVNT-YIVA 417 (574) T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccccccccc---chhHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhh Confidence 6778888888889999999999999998654433222221111 11111 11223333444444433322221 1221 Q ss_pred CCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCCHHHHHHhhCCCCHH-HHHHHH-----HHH------------- Q lcl|Aclame:pro 432 GEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTVEAIQRIFKVPKK-TAEQWL-----EEI------------- 492 (517) Q Consensus 432 ~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~~~l~~~~~~~ee-ea~~el-----~~i------------- 492 (517) . ....+.+.|+..-..+. .+.....+.+.+|+|+.-+++.. .|+..- ..+.-+ ..+ T Consensus 418 ~---~~~~~~~~f~~~d~~~~-~~~~~~~~~~~~G~lT~NE~R~~-lgl~Pi~gGD~~~~~~n~~~~~~~~~~~~~~~~~ 492 (574) T protein:vir:80 418 E---FGEKYQFQFRGGDLSAQ-LDKLKIIEQEGKVFRTVNEIRHD-KGLEPIKGGDVILNGVHIQAIGQALQEEQLEYQR 492 (574) T ss_pred h---cCCceEEEecccchhhH-HHHHHHHHHHhCCccCHHHHHHH-hCCCCCCCCCEeeeccceeecccccccccCCccc Confidence 1 12345667776655543 34445566778899999997654 343221 011000 000 Q ss_pred ---HHhccccCCCCCcc-----ccCCCCCCCCC Q lcl|Aclame:pro 493 ---RKDQIELDPVTISQ-----RAQKRMFGDEE 517 (517) Q Consensus 493 ---~~E~~~~~~~~~~~-----~~~~~~~G~ee 517 (517) ...+........++ .+.....-+.| T Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~ 525 (574) T protein:vir:80 493 SQDRLNRLLELSGGDVEQPEPEEPKDSQNDTDV 525 (574) T ss_pred hhccccccccccCCCCCCCCCCCCCCccccccc Confidence 00000000000000 00011111111 No 179 >protein:vir:100882 Length: 383 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1473 # MgeName: Lc-Nu # Cross-refs: genbank:acc:YP_358762;genbank:gi:78000027;genbank:GeneID:3726153 Probab=97.30 E-value=0.0001 Score=42.46 Aligned_cols=364 Identities=10% Similarity=0.005 Sum_probs=146.6 Q ss_pred hhccc---chhhhccccCcCCHHHHHHHHHHHHHhc-CCCc-ccccccccCccccccccccCh----HHHHHHHHhhhhc Q lcl|Aclame:pro 18 LSGQT---LKSINDHEKINIDPNELARIERNLRQYE-GDYP-QVEYINSQGKIQERDYMTLNL----RKLSADVLSGLVF 88 (517) Q Consensus 18 ~~~~~---~~~~~~~~~i~~~~~~~~~i~~~~~~Y~-g~~~-~~~~~~~~~~~~~~~~~~ln~----~~~i~~~~A~ll~ 88 (517) |++.. +++-. ..... ++ ....|..... +... ++. . +..+.... -..||+..|.+ T Consensus 1 Mg~~~~~~~~k~~-~~~~~-~~----~~~~~~~~~~~~~~~~~v~---~------~~~l~~~~v~~~i~~ia~~ia~~-- 63 (383) T protein:vir:10 1 MGLLTPKNFSKRN-AKNMV-YP----SNPAFFTTTVGGMQLSYVS---A------LSALQNTNVYSVINRIASDVSSA-- 63 (383) T ss_pred CCccccccccccc-ccccc-cc----cchhhhhhhccCccccccc---h------hHhhcchHHHHHHHHHHHhhccC-- Confidence 33322 11111 11100 00 0112222211 1111 111 0 00111111 14455555543 Q ss_pred CCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeCCeeEEEEEcCCeEEEEEE Q lcl|Aclame:pro 89 NEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDNGEIEFSWALANAFYPLRS 168 (517) Q Consensus 89 ~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~g~~~i~~v~a~~~~P~~~ 168 (517) + +.+.+... ...|++--.......-+..++.+.+-.|.+++.+. ... +.+++++.+-. T Consensus 64 --~--~~~~~~~~-----------~~ll~~PN~~~t~~~f~~~~~~~l~l~Gn~~~~i~--~~~--~~~~p~~~~~v--- 121 (383) T protein:vir:10 64 --H--FKTENTAT-----------LNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLV--GQN--LEHIPNSDVQI--- 121 (383) T ss_pred --c--eeecccch-----------hhhhhCCCCCCCHHHHHHHHHHHhhhcCCeEEEEE--cCc--eeEeecCcceE--- Confidence 2 33332211 11121100000112223334555555677766542 221 22222222110 Q ss_pred cCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccccCCCCcceEEcCC Q lcl|Aclame:pro 169 NSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGL 248 (517) Q Consensus 169 ~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~ 248 (517) ....+....+|... +. .+ |..+.+ .. T Consensus 122 --------------~~~~~~~~~~~~~~---------------------~~-~~----~~~~~~-------------~~- 147 (383) T protein:vir:10 122 --------------NYLPGNMGIVYTVL---------------------ES-ND----RPKMVL-------------RQ- 147 (383) T ss_pred --------------EEEEcCCceEEEEE---------------------Ec-CC----ceEEEE-------------cc- Confidence 00111111111100 00 00 011100 00 Q ss_pred CcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhc-cceeec--chHHhccCCCCccc-ccCcc Q lcl|Aclame:pro 249 SRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMG-QRTVFV--SDVMLRTVPDESGM-PPPQV 324 (517) Q Consensus 249 ~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~-~~~i~v--~~~~l~~~~~~~~~-~~~~~ 324 (517) + -+.||+...++ -.+..+|+|.+.-+...|+....+-.-..+-|+.| .+.-++ |..+. +.... ..... T Consensus 148 ~--evih~r~~~~~--~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~f~ng~~~~~il~~~~~~~----~~e~~~~~~~~ 219 (383) T protein:vir:10 148 D--QMLHFRLMPDP--QYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLS----DGKDLESAREE 219 (383) T ss_pred c--ceEEeccCCCC--cccccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCC----CHHHHHHHHHH Confidence 0 13455532221 11235799999888888887766555555556654 443333 11110 00000 00011 Q ss_pred CCcccceeeeecC-----CCCCCcceEEecccChHHHH-HHHHHHHHHHHHHhCCCccccccCCCccchHHHHHHHHHHH Q lcl|Aclame:pro 325 FDPDVNVYKSIRM-----GTDEEFVKDVTHDIRTEQYK-EAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVSENDLT 398 (517) Q Consensus 325 fd~~~~~y~~~~~-----~~~~~~v~~~~~dir~e~~~-~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a~~~~~ 398 (517) |.. .+.+-+. =+++..++.++.+....+.+ +..+...++|+...|++|..+|....+..+...+....... T Consensus 220 ~~~---~~~~~n~~~~~vl~~g~~~~~l~~~~~d~~~l~e~~~~~~~~Ia~afgVPp~~lg~~~~~~~~~sn~eq~~~~~ 296 (383) T protein:vir:10 220 FEK---ANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATY 296 (383) T ss_pred HHH---HhCccccCCccccCCCceEEecCCChhHHHHHHHHHHHHHHHHHHHhCCCHHHcCCccCCCCccccHHHHHHHH Confidence 110 1111110 02333455566666666664 56677788999999999999986543322222222111111 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCCHHHHHHhhC Q lcl|Aclame:pro 399 YRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTVEAIQRIF 478 (517) Q Consensus 399 ~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~~~l~~~~ 478 (517) ..++.-....++..|.. .++ ...+.++++.-+..|..+.++.+.+++.+|+|+..+++..+ T Consensus 297 ~~~l~P~~~~ie~~l~~------------~l~------~~~~~f~~~~l~~~d~~~~~~~~~~~~~~G~~t~nE~R~~l- 357 (383) T protein:vir:10 297 LANLNSYVNPIVDELRL------------KMN------APDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFIL- 357 (383) T ss_pred HHHHHHHHHHHHHHHHH------------hhC------CceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHh- Confidence 12222222222222221 121 13477888888889999999999999999999999866543 Q ss_pred CCCHHHHHHHHHHHHHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 479 KVPKKTAEQWLEEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 479 ~~~eeea~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) |+..-.-. .++ .......+-.+|||| T Consensus 358 g~~p~~~~-d~~------------~~~~~~~~~~gGd~e 383 (383) T protein:vir:10 358 TRSGFLPD-NLP------------EFKPLTNETKGGDDK 383 (383) T ss_pred CCCcccCC-ccc------------ccCCCcccCCCCCCC Confidence 43221000 000 000111233457888 No 180 >protein:vir:104892 Length: 558 # NCBI annotation: T4-like capsid assembly protein # Family: family:all:1036 # MgeID: mge:1630 # MgeName: P-SSM2 # Cross-refs: genbank:acc:YP_214363;genbank:gi:61806003;genbank:GeneID:3294412 Probab=97.29 E-value=0.00011 Score=42.39 Aligned_cols=432 Identities=12% Similarity=0.064 Sum_probs=189.6 Q ss_pred HHHHhhcccchh----hhccccCcCCH-------------------------HHHHHHHHHHHHhcCCCcccccccccCc Q lcl|Aclame:pro 14 GGYALSGQTLKS----INDHEKINIDP-------------------------NELARIERNLRQYEGDYPQVEYINSQGK 64 (517) Q Consensus 14 ~~~~~~~~~~~~----~~~~~~i~~~~-------------------------~~~~~i~~~~~~Y~g~~~~~~~~~~~~~ 64 (517) |.-.++ .+++. ......++.|. ....-|+++|.++.. |.+ T Consensus 1 m~~lfg-f~~~~~~~~~~~~~s~~~p~~ddg~~~~~~~g~~~~~~~~~~~~~~~~eLI~~YR~ma~~--pEv-------- 69 (558) T protein:vir:10 1 MAKLFG-FSIEETQKKSTSIISPVPKNNEDGVDNFISSGFYGQYVDIEGAYRSEYDLIRRYREMALH--PEA-------- 69 (558) T ss_pred Ccchhc-chhhhhhhhccCCccccCCCccccccceeccceeeeeecccchhhhHHHHHHHHHHHhhc--cch-------- Confidence 111111 11110 00001111111 112233333333211 111 Q ss_pred cccccccccChHHHHHHHHhhhhc----CCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhC Q lcl|Aclame:pro 65 IQERDYMTLNLRKLSADVLSGLVF----NEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALG 140 (517) Q Consensus 65 ~~~~~~~~ln~~~~i~~~~A~ll~----~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G 140 (517) -..|-.-.-+.++ .+++++.+++... .....++-.+..+.++.--+|.++..+....+.+.| T Consensus 70 -----------d~Av~eIVneaiv~d~~~~pV~i~Ld~~~~---s~~iK~kI~eEF~~Il~ll~F~~~~~e~fR~WYVDg 135 (558) T protein:vir:10 70 -----------DGAIEDVVNEAIVSDLYDSPVEVELSNLNA---SNTLKKKIREEFRYIKEMMDFDKKSHEIFRNWYVDG 135 (558) T ss_pred -----------hhHHHHhhcceeEecCCCceEEEEecccCc---chHHHHHHHHHHHHHHHHhccchhhhHHHhhheeee Confidence 0111111111122 2244555554332 122334555667777777789999999999999999 Q ss_pred CEEEEEEEeCC-----eeEEEEEcCCeEEEEEEc----CCceEEEEEEEEEEEEecCCcEEEEE-EEEEeecceeeccce Q lcl|Aclame:pro 141 GLTVRPYVDNG-----EIEFSWALANAFYPLRSN----SNGISEGVMKSVTTKVIGNKTVYYTL-LEFHEWEKTEEGESL 210 (517) Q Consensus 141 ~~~~k~~~d~g-----~~~i~~v~a~~~~P~~~~----~~~~~~~a~~~~~~~~~~~~~~~yt~-lE~h~~~~~~~~~~~ 210 (517) ..+||.++|.. =..+..++|.++-++.-- .++....++ ....+..++.. -|++.+.. T Consensus 136 RiyfHKiid~k~pk~GI~ELr~lDPr~i~~Vr~i~~~~~~~~~~~~~------~~~~~~~~~~~~~eyy~Y~~------- 202 (558) T protein:vir:10 136 RVFYLKVIDTKNPQEGIQDLRYIDPLKIKFIRQEKRKPGNQDPAIRV------RSEQDVVPNPEFEEFYIYTP------- 202 (558) T ss_pred EEEEEEEEeCCCccccceeeeeeCcccceeeeeeccccccccceeee------ecccceeeccceeEeeeecC------- Confidence 99999999853 345888999888665321 111110111 01111111111 12222211 Q ss_pred EEEEEEEeecCCccccCcccccccccCCCCcc-e-EE-cCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHH Q lcl|Aclame:pro 211 YVITNELYKSDNEGEIGKRIPLEELYEGMQEK-T-YI-QGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKIND 287 (517) Q Consensus 211 y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~-~-~~-~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~ 287 (517) .. .+.+.....++..-++ .++.. + +. .|+-. .....-+|-+..|.-.+-.| + T Consensus 203 ---~~-~~~~~~~~~~~~~~~v-----kI~~dAI~y~hSGL~d---------------~~~~~i~syLhkAIKp~NQL-k 257 (558) T protein:vir:10 203 ---KV-QHPTGMVGQMGGKNSI-----KIAKDSITMCTSGLVD---------------RNKNRVLSYLHKAIKALNQL-R 257 (558) T ss_pred ---Cc-ccccccceeecCCCce-----eechhheeeeccccee---------------cCCCeeeecchHhhHhHHhh-H Confidence 00 0000111111111111 01111 1 11 11100 00111134454444433333 2 Q ss_pred HHHHHHHHH---Hhccceeec-c---------hHHhcc---------CCCCcccccCccCCcccceeeeecCC------C Q lcl|Aclame:pro 288 TYDQFWWEI---KMGQRTVFV-S---------DVMLRT---------VPDESGMPPPQVFDPDVNVYKSIRMG------T 339 (517) Q Consensus 288 ~~s~~~~e~---~~~~~~i~v-~---------~~~l~~---------~~~~~~~~~~~~fd~~~~~y~~~~~~------~ 339 (517) ..-..+-.+ |.-.+|||- + +.+|+. .-+...+. -.+++.++++.-+ + T Consensus 258 mlEDAlVIYRitRAPERRvFYIDVGnLPk~KAeqYlr~iM~k~KNklVYDa~TGe-----v~ddrk~msMlEDyWLpRRe 332 (558) T protein:vir:10 258 MIEDSLVIYRLSRAPERRIFYIDVGNLPKVKAEQYLKEVMSRYRNKLVYDANTGE-----VRDDRKFMSMMEDFWLPRRE 332 (558) T ss_pred HHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhccceEEEeccCce-----ecccchhhhhHhhhcccccC Confidence 233333333 455567763 1 111111 00111111 1244445543211 3 Q ss_pred CCCc--ceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 340 DEEF--VKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGR-SMKTATEIVSENDLTYRTRNDHVYEVEQFIKGL 416 (517) Q Consensus 340 ~~~~--v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~-~~~TAtei~a~~~~~~~t~~~~~~~~~~al~~l 416 (517) ++.+ |+++..- .--.-.+-++-+.+.+....+.+.+-++.+++ ..+-++||.-..-....-+.+++..|..-+.++ T Consensus 333 GgrgTEItTLpGg-qnLgem~DV~YF~kKLy~aLnVP~SRl~~e~~f~~Gr~~EItRDEiKF~KFI~RLR~rFs~lF~~~ 411 (558) T protein:vir:10 333 GGRGTEITTLPGG-QNLGELSDVDYFQKKLYRALGVPESRIAAEGGFNLGRSSEILRDELKFAKFVGRLRKRFAAMFNDM 411 (558) T ss_pred CCCccceeecccc-CCcchHHHHHHHHHHHHHHhCCCccccCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH Confidence 3333 4444322 22223344555666777777887777765543 233456776666556667777888888888888 Q ss_pred HHHHHHHHhhhhccCCCCCCc--cceEEEeCCCccCCHHHHHHHHHHHH-----hcC----CCCHHHHHHhhCCCCHHHH Q lcl|Aclame:pro 417 VISVLELAKTYKLFGGEIPSA--EHIGVDFDDGVFQDRSALLRFYGQAK-----TFG----FIPTVEAIQRIFKVPKKTA 485 (517) Q Consensus 417 i~~il~~~~~~~~~~~~~~~~--~~v~i~f~d~i~~d~~~~~~~~~~~~-----~~G----~~S~~~~l~~~~~~~eeea 485 (517) ++.=|-|- +.+....+.. ..|.++|...---.+..+++.+.+-. ..+ ..|.+...++...+||+|. T Consensus 412 Lk~qLilK---giit~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~S~dyi~k~ILr~tDeeI 488 (558) T protein:vir:10 412 LKTQLVLK---NIVTPEDWKTMEDHIQYDFLYDNQFAELKESELMEGRLGMLATIEPYIGKYYSTEYVRKRVLRQTDMEI 488 (558) T ss_pred HHHhhhhc---cCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHhccCHHHH Confidence 77765432 2222222322 45777776554444444444332211 112 4688887778889999999 Q ss_pred HHHHHHHHHhcccc-CCCCCccccCC------CCCCC----------CC Q lcl|Aclame:pro 486 EQWLEEIRKDQIEL-DPVTISQRAQK------RMFGD----------EE 517 (517) Q Consensus 486 ~~el~~i~~E~~~~-~~~~~~~~~~~------~~~G~----------ee 517 (517) +++...|++|.... -+.+..+++.. +..|+ .| T Consensus 489 ~~~~kqI~~E~k~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (558) T protein:vir:10 489 EEIDTQIEDEIQKGIIPDPSQIDPITGEPLPQEGDPAMEGMGEQPVDPD 537 (558) T ss_pred HHHHHHHHHHHhCCCCCCccccChhhccccCccCCchhccCCCCCcccc Confidence 99999999886432 11111111111 00111 11 No 181 >protein:vir:105641 Length: 516 # NCBI annotation: putative head-tail connector # Family: family:all:481 # MgeID: mge:1674 # MgeName: K1E # Cross-refs: genbank:acc:YP_425006;genbank:gi:83571754;uniprot:Q2WC46;genbank:GeneID:3837282 Probab=97.23 E-value=0.00012 Score=42.03 Aligned_cols=443 Identities=10% Similarity=0.033 Sum_probs=170.6 Q ss_pred HHHHHHHhhc---ccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccChHHHHHHHHhhhh Q lcl|Aclame:pro 11 FKRGGYALSG---QTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLRKLSADVLSGLV 87 (517) Q Consensus 11 ~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~~~i~~~~A~ll 87 (517) +|.-+..-.. +.++..-+.. -.+-..-...|+.++.=--|.+- ..++.....++.-=+.+...++.+|+-| T Consensus 1 ~~~~~~~~~~~~~~~l~~r~~~L----~~~R~~~e~~w~e~a~~~lP~~~--~~~~~~~~~~~~~dstg~~a~~~LAa~l 74 (516) T protein:vir:10 1 MKQSTDLEYGGKRSKIPKLWEKF----STKRSSFLDRAKHYSKLTLPYLM--NDKGDNETSQNGWQGVGAQATNHLANKL 74 (516) T ss_pred CCchhhHhhhhHHHHHHHHHHHH----HHhhhHHHHHHHHHHHhhccccc--CCCCCcccccccccchHHHHHHHHHHHH Confidence 1111100000 1111111000 01111224556655543323221 1122222222222234455555555544 Q ss_pred cCCc--c-----eeEecCcccc--cc-------cccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeCC Q lcl|Aclame:pro 88 FNEQ--C-----EVYVSDAKDE--EK-------KDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDNG 151 (517) Q Consensus 88 ~~e~--~-----~i~~~~~~~~--~~-------~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~g 151 (517) .+-. | ++.+++.... .. .+...+...+.+...+..++|...+.++..+..++|.+. .|.|.. T Consensus 75 ~~~ltpp~~~WF~L~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~--l~~d~~ 152 (516) T protein:vir:10 75 AQVLFPAQRSFFRVDLTAQGEKVLNQRGLKKTELATIFAQVETRAMKELEQRQFRPAVVEAFKHLIVAGSCM--LYKPSK 152 (516) T ss_pred HhhhcCCCCccccccCChhhHhhhhccCchhHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCeEe--EEecCC Confidence 4321 1 1222221110 00 111112223344467888899999999999999999876 455632 Q ss_pred eeEEEEEcCCeEEEEEEcCCceEEEEEEEEEEEE---------------------ecCCcEEEEEEEEEeecceeeccce Q lcl|Aclame:pro 152 EIEFSWALANAFYPLRSNSNGISEGVMKSVTTKV---------------------IGNKTVYYTLLEFHEWEKTEEGESL 210 (517) Q Consensus 152 ~~~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~---------------------~~~~~~~yt~lE~h~~~~~~~~~~~ 210 (517) . .+..+|-.+++ +..|..|....+|....... .++.-.+|+++++.. ++. T Consensus 153 ~-~~~~~pl~~y~-v~~d~~G~v~~ivrr~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~i~t~v~~~~-------~~~ 223 (516) T protein:vir:10 153 G-AISAIPMHHYV-VNRDTNGDLLDIILLQEKSLRTFDPATRAVVEVGLKGKKCKEDDSIKLYTHAKYLG-------EGF 223 (516) T ss_pred C-CeEEEEcCeEE-EeeCCCCCeEEEeeeecccHHHHHHHhhhhhhhhhhhhccCCCCceEEEEEEEecC-------CCc Confidence 2 25667777766 45565554444433221000 011112344444321 111 Q ss_pred EEEEEEEeecCCccccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHH Q lcl|Aclame:pro 211 YVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYD 290 (517) Q Consensus 211 y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s 290 (517) +. +|...+...+|. + . . -|+..-||+.+ -.+..+++.||+|--..+.+-++.|+..-- T Consensus 224 ~~----~~~~~d~~~~~~-----~------s--~-~~~~e~P~~~~----Rw~~~~ge~YGrgp~~~~L~D~k~L~~l~~ 281 (516) T protein:vir:10 224 WE----LKQSADDIPVGK-----V------S--K-IKSEKLPFIPL----TWKRSYGEDWGRPLAEDYSGDLFVIQFLSE 281 (516) T ss_pred eE----EEEeeCceeecc-----c------c--c-cccccCCeeee----eeeecCCCCcccchHHHhhHHHHHHHHHHH Confidence 11 121111111110 0 0 0 01122233333 355566889999999999999999986555 Q ss_pred HHHHHH-HhccceeecchHHhccCCCCcccccCccCCcccceeeeecCCCCCCcceEEe--cccChHHHHHHHHHHHHHH Q lcl|Aclame:pro 291 QFWWEI-KMGQRTVFVSDVMLRTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVT--HDIRTEQYKEAINQALRTL 367 (517) Q Consensus 291 ~~~~e~-~~~~~~i~v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~--~dir~e~~~~~l~~~l~~i 367 (517) ....-. ...++...||++.+....+ ........+. .+..+ .+..++ +......-...++.+.+.| T Consensus 282 ~~l~~~~~a~~~~~lv~p~g~~~~~~--------l~~~~~g~~~--~g~~~--~v~~~q~~~~~d~~~~~~~i~~~~~rI 349 (516) T protein:vir:10 282 AVARGAALMADIKYLIRPGAQTDVDH--------FVNSGTGEVV--TGVEE--DIHIVQLGKYADLTPISAVLEVYTRRI 349 (516) T ss_pred HHHHHHHHhcCCCcccCcccccchhh--------hccCCCceee--cCCcc--cceeeecCcccchHHHHHHHHHHHHHH Confidence 554433 5667777775543221110 0111111222 12222 233333 3223344444455544444 Q ss_pred HHHhCCCccccccCCCccchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCC Q lcl|Aclame:pro 368 EMELKLSVGTFSFDGRSMKTATEIVSENDLTYRTRNDHVYEVE-QFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDD 446 (517) Q Consensus 368 ~~~~g~s~~~~~~~~~~~~TAtei~a~~~~~~~t~~~~~~~~~-~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d 446 (517) ....=+. .+.--.+...|||||....+...+...-.-..+. ..|.-|+.-++. ......+.....+++. . T Consensus 350 ~~af~~~--~l~~rd~~rvTAtEV~~r~~E~~~~LGpv~~rl~~Ell~Pli~r~~~-----~~~p~~P~~lv~~~~v--~ 420 (516) T protein:vir:10 350 GVVFMME--TMTRRDAERVTAVEIQRDALEIEQNMGGVYSLFATTMQSPVAMWGLL-----EAGDSFTSDLVDPVII--T 420 (516) T ss_pred HHHHhhh--hhhccCCccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-----hhCCCCChhhcCccee--h Confidence 3322111 1211123457999999999888887765322222 223333332221 1111111122222221 1 Q ss_pred CccCCHHHHHHHH------HHHHh--cCC-------CCHH---HHHHhhCCC------CHHHHHHHHHHHHHhccc--cC Q lcl|Aclame:pro 447 GVFQDRSALLRFY------GQAKT--FGF-------IPTV---EAIQRIFKV------PKKTAEQWLEEIRKDQIE--LD 500 (517) Q Consensus 447 ~i~~d~~~~~~~~------~~~~~--~G~-------~S~~---~~l~~~~~~------~eeea~~el~~i~~E~~~--~~ 500 (517) ..+.....+.. .+.++ +++ +... ..+....|. ++||++++.++.++.|.. +. T Consensus 421 --~i~~L~raq~~~~i~~~~q~i~~~~q~~p~v~d~id~d~~~~~~a~~~gvp~~~irs~eev~~~r~~~~~~q~~~~~~ 498 (516) T protein:vir:10 421 --GIEALGRMAELDKLANFAQYMSLPLQWPEPVLAAVKWPDYMDWVRGQISAELPFLKSAEEMEQEQEAQMQAQQAQMLE 498 (516) T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHhhcCHHHHHHHHHHHhCCChhccCCHHHHHHHHHHHHHHHHHHHHH Confidence 11222211111 11111 111 1111 112233332 345554443332221111 01 Q ss_pred CCCCccccCCCCCCCCC Q lcl|Aclame:pro 501 PVTISQRAQKRMFGDEE 517 (517) Q Consensus 501 ~~~~~~~~~~~~~G~ee 517 (517) +... . ...|.-|++= T Consensus 499 ~~~~-~-~~~~~~~~~~ 513 (516) T protein:vir:10 499 EGVA-K-AVPGVIQQEL 513 (516) T ss_pred HHhh-h-cccchhhhhh Confidence 1000 0 1111112211 No 182 >protein:vir:4828 Length: 382 # NCBI annotation: ORF24 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:105 # MgeName: 7201 # Cross-refs: genbank:acc:NP_038325;genbank:gi:9634651;genbank:GeneID:1262630 Probab=97.22 E-value=0.00013 Score=41.98 Aligned_cols=363 Identities=9% Similarity=-0.010 Sum_probs=144.7 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHH-HHH-HHHhcCCCcccccccccCccccccccccCh--- Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARI-ERN-LRQYEGDYPQVEYINSQGKIQERDYMTLNL--- 75 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i-~~~-~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~--- 75 (517) ||+|+++.+ + ++ ....-. ...+ ..+ ..|-.|. .++. ...+.... T Consensus 1 Mg~f~~~~~---~-------~~-----~~~~~~-----~~~~~~~~~~~~~~~~--~v~~---------~~~l~~~~v~~ 49 (382) T protein:vir:48 1 MPIFNLATE---S-------PP-----DNQGGF-----FDVVDSDFLASLKGNE--WVSA---------ETALRNSDLFS 49 (382) T ss_pred Ccccccccc---C-------Cc-----cccccc-----ccchhhhccccccCCc--ccch---------HhhhccHHHHH Confidence 999966422 1 00 000000 0000 000 0010111 0100 00011111 Q ss_pred -HHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe-CCee Q lcl|Aclame:pro 76 -RKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD-NGEI 153 (517) Q Consensus 76 -~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d-~g~~ 153 (517) -..||+..|++ + +.+-+... ..+++.=+... ....-++.++.+.+..|.+++.+.-| +|++ T Consensus 50 ~i~~ia~~ia~~----~--~~~~~~~~--------~~L~~~PN~~~---t~~~f~~~l~~~l~l~Gna~~~i~rd~~G~~ 112 (382) T protein:vir:48 50 IINQLSNDLATV----K--LITSRKKL--------QGIVDNPSNNA---NRFNFYQSIFAQMLLGGEAFAYRWRNENGRD 112 (382) T ss_pred HHHHHHHhhccC----c--eeeecchh--------hhhhhhcCCCC---CHHHHHHHHHHHhhhcCCEEEEEEECCCCcE Confidence 13455555543 2 22222110 01111111111 12333444556677788888887766 3553 Q ss_pred -EEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCccccc Q lcl|Aclame:pro 154 -EFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPL 232 (517) Q Consensus 154 -~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l 232 (517) .+..++|+.+-+...+.++.. +|+ ++ + .+ ...|..+.+ T Consensus 113 ~~l~~i~~~~v~v~~~~~~~~~-----------------~y~------------------~~---~--~~-~~~~~~~~~ 151 (382) T protein:vir:48 113 MKWEYLRPSQVSFNRLDNKDGI-----------------YYN------------------IT---F--DD-PRIPPKQHV 151 (382) T ss_pred EEEEEEcCceeEEEEcCCCCeE-----------------EEE------------------EE---e--cC-ccccceeEE Confidence 677788888765432222211 111 00 0 00 000111111 Q ss_pred ccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhc-cceeecchHHhc Q lcl|Aclame:pro 233 EELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMG-QRTVFVSDVMLR 311 (517) Q Consensus 233 ~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~-~~~i~v~~~~l~ 311 (517) . +. -++||+.+.+ .+..+|+|-+.-+...|+.....-.-...-++.| .+.-++ + T Consensus 152 ~------~~----------evih~~~~~~----~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~il-----~ 206 (382) T protein:vir:48 152 P------QN----------DVLHFRLLSV----DGGMTSVSPLMALSRELDIQKASGNLTINSLKNALNANGIL-----K 206 (382) T ss_pred c------Cc----------cEEEecCCCC----CCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEE-----E Confidence 0 00 1456654322 2346799999888888865544433334445644 444443 1 Q ss_pred cCCCCcccccC---ccCCc-ccceeeeecCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccch Q lcl|Aclame:pro 312 TVPDESGMPPP---QVFDP-DVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKT 387 (517) Q Consensus 312 ~~~~~~~~~~~---~~fd~-~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~T 387 (517) ........... ..|.. .......+-. +++..++.++....+.+..+..+...+.|+...|++|..+|..+....+ T Consensus 207 ~~~~~~~e~~~~~~~~~~~~~~n~g~~~vl-~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~afgVp~~~lg~~~~~~~~ 285 (382) T protein:vir:48 207 IKGGGLLDFKTKLSRSRQAMKQMQGGPLVL-DDLEDFTPLEIKSNVSQLLKQADWTTGQFAKVYGIPDNVVGGQGDQQSS 285 (382) T ss_pred eCCCCChHHHHHHHHHHHhhccCCCCeeEc-CCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccH Confidence 11111110000 00000 0000000001 2233455566555666778888888899999999999999854332211 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCC Q lcl|Aclame:pro 388 ATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGF 467 (517) Q Consensus 388 Atei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~ 467 (517) +.... ..++.+|..++..|..-.+. .++... ...+... +-.+.......+..+..+|+ T Consensus 286 ~~~~~--------------~~~~~~l~p~~~~i~~~l~~-~l~~~~---~~~~~~~----~~~~~~~~~~~~~~l~~~g~ 343 (382) T protein:vir:48 286 LEMSS--------------DLYSKAVSRYLRPFLSELSQ-KLSCDV---DADIFPA----VDPTGSNYISRINSLVKTGT 343 (382) T ss_pred HHHHH--------------HHHHHHHHHHHHHHHHHHHH-HhcChh---hhhhhhh----hccchhHHHHHHHHHhhcCc Confidence 11111 12222233333322211110 111100 0111111 11233445556677888999 Q ss_pred CCHHHHHHhh--CCCCHHHHHHHHHHHHHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 468 IPTVEAIQRI--FKVPKKTAEQWLEEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 468 ~S~~~~l~~~--~~~~eeea~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) +++-++...+ .|+..+++ .+. ++.. +..-|+|| T Consensus 344 ~t~~e~r~~l~~~g~~~~~~----~~~--~~~~-----------~~~~GGd~ 378 (382) T protein:vir:48 344 LAQNQGLYILQQAEILPKEL----PNG--ENPN-----------STLKGGEE 378 (382) T ss_pred cCHHHHHHHHhhCCCCCcch----hhh--hcCC-----------CCCCCCCC Confidence 9998877543 35543322 221 1111 11112222 No 183 >protein:vir:960 Length: 413 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:19 # MgeName: bIL285 # Cross-refs: genbank:acc:NP_076614;genbank:gi:13095722;genbank:GeneID:920279 Probab=97.15 E-value=0.00015 Score=41.54 Aligned_cols=389 Identities=9% Similarity=0.034 Sum_probs=158.0 Q ss_pred CchHHHHH---H--HHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccCh Q lcl|Aclame:pro 1 MKVIQRIK---N--FFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNL 75 (517) Q Consensus 1 m~~~~~ik---~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~ 75 (517) |..++-+| + ||++..........+... .. .+........|..+..+.. . ........ T Consensus 1 ~~~~~~~~~~~~m~~F~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~--~-----------~~~~~~~~ 62 (413) T protein:vir:96 1 MPGVSEIRKDKNLKFFNNKRSPTEESKAKDEI----PK-APQVVMTLPNFFKELISDG--Y-----------TKLSDSPE 62 (413) T ss_pred CCccchhhhhhcCCccccCCCcchhhhhhccc----cc-cccccccchhhHhhhccch--h-----------HHHhhchH Confidence 55554443 3 343221100000000000 00 0000001122222221110 0 00011112 Q ss_pred HHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHH-HHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeC-C-e Q lcl|Aclame:pro 76 RKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQH-VFQHNKFIKNLSDYLEPTFALGGLTVRPYVDN-G-E 152 (517) Q Consensus 76 ~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~-~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~-g-~ 152 (517) -...++.+|+-+..-+..+.-.+.+... .....+...|.. --.......-++.++.+.+..|.+++.+..+. | . T Consensus 63 v~~cI~~ia~~ia~~~~~~~~~~~~~~~---~~~~~~~~ll~~~PN~~~t~~~f~~~~~~~lll~Gn~~~~i~r~~~g~~ 139 (413) T protein:vir:96 63 VRMAVDCIADLVSNMTIQLMQNGETGDK---RIKNDLSRVVDIEPNKYLSRKTFIQWLVRSMLLEGNGNAVVKPQVSGDK 139 (413) T ss_pred HHHHHHHHHHhhccCceEEEEecCCCcc---ccccHHHHHHHhccccCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCCc Confidence 2222333333333223333211111111 111222222221 10011223344556777778898888887763 3 3 Q ss_pred e-EEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccc Q lcl|Aclame:pro 153 I-EFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIP 231 (517) Q Consensus 153 ~-~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~ 231 (517) + .+..++|+.+-+.. +.+. ..|.. ...+..| + T Consensus 140 ~~~L~~l~~~~v~~~~-~~~~------------------~~y~~----------------~~~~~~~------------~ 172 (413) T protein:vir:96 140 IIGLTPISPYKVTFNV-SDDD------------------LDYSI----------------TFDNKEY------------D 172 (413) T ss_pred eEEEEEecCceeEEEE-cCCe------------------EEEEE----------------eecCcEE------------c Confidence 3 56777777766531 1111 11110 0000001 1 Q ss_pred cccccCCCCcceEEcCCCcceEEEecC-CccccccCCCC-CCcchhhhhHHHHHHHHHHHHHHHHHHHhcc-ceee--cc Q lcl|Aclame:pro 232 LEELYEGMQEKTYIQGLSRPLFNYLKP-SGFNNINPHSP-LGLGITDNSVSTLKKINDTYDQFWWEIKMGQ-RTVF--VS 306 (517) Q Consensus 232 l~~~~~~l~~~~~~~g~~~p~f~~~~~-~~~N~~~~~sp-lG~S~~~~~~~lid~lD~~~s~~~~e~~~~~-~~i~--v~ 306 (517) +.+ ++||+. +.+ .++ .|.|.+.-+...|......-.....-++.|. +.-+ +| T Consensus 173 --------~~e----------vih~k~~~~~-----~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~ 229 (413) T protein:vir:96 173 --------PST----------LLHFVLNPSI-----ERPFIGTGYKVALKDIVGNLKQASVTKKGFMASEYMPNLIVSVD 229 (413) T ss_pred --------hhh----------EEEEeccCCC-----CCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeC Confidence 011 335542 211 123 4889887777777665444333444455543 3322 22 Q ss_pred hHHhccCCCCcccccCccCCcccceeee-------ecCCCCCCcceEEe-cccChHHHHHHHHHHHHHHHHHhCCCcccc Q lcl|Aclame:pro 307 DVMLRTVPDESGMPPPQVFDPDVNVYKS-------IRMGTDEEFVKDVT-HDIRTEQYKEAINQALRTLEMELKLSVGTF 378 (517) Q Consensus 307 ~~~l~~~~~~~~~~~~~~fd~~~~~y~~-------~~~~~~~~~v~~~~-~dir~e~~~~~l~~~l~~i~~~~g~s~~~~ 378 (517) ..+ .+.........|. ..|.+ +-.++++..++.+. ......+..+..+...++|+...|++|..+ T Consensus 230 ~~l----~~e~~~~~~~~~~---~~~~g~~n~g~~~vl~~~~~~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~l 302 (413) T protein:vir:96 230 SDS----DELSDEEGRENFE---EMYLKRKEAGKPWIIPEGMVNVQQIKPLTLNDLAINDAVTLDKKTVAGIFGVPAFLL 302 (413) T ss_pred CCC----CHHHHHHHHHHHH---HHhcCccccCceeeecCCcccccccccCChhHHHHHHHHHHHHHHHHHHhCCCHHHc Confidence 211 0000001001110 01111 11122222233332 233445666777777789999999999998 Q ss_pred ccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHH Q lcl|Aclame:pro 379 SFDGRSMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRF 458 (517) Q Consensus 379 ~~~~~~~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~ 458 (517) |... +++-.. ...++.+|..++..|....+. .++ .+...+.+++++-+..|.++.++. T Consensus 303 g~~~-----~~~~~~------------~~~~~~~l~P~~~~ie~~ln~-~ll----~~~~~~~fd~~~ll~~d~~~~~~~ 360 (413) T protein:vir:96 303 GVGT-----YNKDEF------------NNFINTKIMSIAQVIQQTYNK-LIV----EEDMYFSLNPRSLYNYSLTEMVSA 360 (413) T ss_pred CCCc-----chHHHH------------HHHHHHHHHHHHHHHHHHHHH-hhC----CCCcEEEEechhhhccCHHHHHHH Confidence 6432 111111 123444455555554443322 122 234567788888778899999999 Q ss_pred HHHHHhcCCCCHHHHHHhhCCCCHH-HHHHHHHHHHHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 459 YGQAKTFGFIPTVEAIQRIFKVPKK-TAEQWLEEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 459 ~~~~~~~G~~S~~~~l~~~~~~~ee-ea~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) ..+++.+|+|+.-++++ ..|+... .+++-+.. ....|. +........+++| T Consensus 361 ~~~~~~~G~~t~NE~R~-~~g~~p~~~gd~~~~~-----~n~~~~--~~~~~~~~~~~~d 412 (413) T protein:vir:96 361 GAQMTQLNALRRNEFRN-WVGMPPDAEMDDLLVL-----ENYLQQ--KDLVNQKKLIQDE 412 (413) T ss_pred HHHHHhCCCcCHHHHHH-HhCCCCCCCcceeeec-----ccccch--hhcccccCCCCCC Confidence 99999999999999765 4466432 12211100 000110 0000111122333 No 184 >protein:vir:100187 Length: 385 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1524 # MgeName: phi AT3 # Cross-refs: genbank:acc:YP_025029;genbank:gi:48697262;genbank:GeneID:2948285 Probab=97.09 E-value=0.00018 Score=41.15 Aligned_cols=370 Identities=11% Similarity=0.020 Sum_probs=144.8 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCc--ccccccccCccccccccccChHHH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYP--QVEYINSQGKIQERDYMTLNLRKL 78 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~--~~~~~~~~~~~~~~~~~~ln~~~~ 78 (517) ||||.++. +.++ +.-. ...+ .-..|...+.|... .+. .+..++...-.. T Consensus 1 Mg~~~~~~-~~~~-------~~~~--------~~~~----~~~~~~~~~~~~~~~~~v~---------~~~al~~~~v~~ 51 (385) T protein:vir:10 1 MGLLTPRN-FNKR-------KAKN--------MVYP----SNPAFFTTTVGGMQLSYVS---------ALSALQNTNVYS 51 (385) T ss_pred Cccccchh-cccc-------cccc--------cccc----cchhhhhhhccccCccccC---------HHHhhccHHHHH Confidence 99997632 1111 0000 0000 01112222222111 111 011111122223 Q ss_pred HHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeCCeeEEEEE Q lcl|Aclame:pro 79 SADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDNGEIEFSWA 158 (517) Q Consensus 79 i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~g~~~i~~v 158 (517) .++.+|+-+..=|. .+.+.. ....|++--.......-.+.++.+.+-.|.+++.+..+. +..+ T Consensus 52 ~i~~ia~~ia~~p~--~v~~~~-----------~~~ll~~PN~~~t~~~f~~~~~~~l~l~Gn~~~~i~r~~----~~~~ 114 (385) T protein:vir:10 52 VINRIASDVASAHF--KTENTA-----------TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN----LEHI 114 (385) T ss_pred HHHHHHHHHhhCce--eeeccc-----------hhhhhhcCCCCCCHHHHHHHHHHHhhhcCCeEEEEEcCc----eeEe Confidence 33334433332233 332211 111122110000111222233445555687777654331 2222 Q ss_pred cCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccccCC Q lcl|Aclame:pro 159 LANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEG 238 (517) Q Consensus 159 ~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~ 238 (517) |++.+.. ....+....+|... +. .. |..+.+ + T Consensus 115 p~~~~~v-----------------~~~~~~~~~~~~~~---------------------~~-~~----~~~~~~---~-- 146 (385) T protein:vir:10 115 PNSDVQI-----------------NYLPGNMGIVYTVL---------------------ES-ND----RPQMVL---R-- 146 (385) T ss_pred ecCCceE-----------------EEEEcCCceEEEEE---------------------Ec-CC----ceEEEE---c-- Confidence 2222111 00111111111100 00 00 000000 0 Q ss_pred CCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhc-cceeec--chHHhccCCC Q lcl|Aclame:pro 239 MQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMG-QRTVFV--SDVMLRTVPD 315 (517) Q Consensus 239 l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~-~~~i~v--~~~~l~~~~~ 315 (517) +.+ ++||+...++ ..+..+|+|.+.-+...|+.....-.-..+-++.| ++.-++ |..+... T Consensus 147 -~~e----------iihik~~~~~--~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~gil~~~~~~~~~--- 210 (385) T protein:vir:10 147 -QDQ----------MLHFRLMPDP--QYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDG--- 210 (385) T ss_pred -ccc----------EEEeccCCCC--cccccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCCH--- Confidence 011 2445432111 11335799999888888876654444444455654 444443 1111000 Q ss_pred CcccccCccCCcccceeeeec-----CCCCCCcceEEecccChHHHH-HHHHHHHHHHHHHhCCCccccccCCCccchHH Q lcl|Aclame:pro 316 ESGMPPPQVFDPDVNVYKSIR-----MGTDEEFVKDVTHDIRTEQYK-EAINQALRTLEMELKLSVGTFSFDGRSMKTAT 389 (517) Q Consensus 316 ~~~~~~~~~fd~~~~~y~~~~-----~~~~~~~v~~~~~dir~e~~~-~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAt 389 (517) .........|. ..+.+-+ .-+++-.++.++......+++ +..+...++|+...|++|..++....+..+.+ T Consensus 211 e~~~~~~~~~~---~~~~~~n~~~~~vl~~g~~~~~l~~~~~d~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~s 287 (385) T protein:vir:10 211 KDLESAREEFE---KANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHS 287 (385) T ss_pred HHHHHHHHHHH---HHhCccccCCccccCCCceEEecCCChhHHHHHHHHHHHHHHHHHHHhCCCHHHcCCccCCCcccc Confidence 00000000111 0111100 012333455566555566664 56677778999999999999986443333333 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCC Q lcl|Aclame:pro 390 EIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIP 469 (517) Q Consensus 390 ei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S 469 (517) .+.........++.-....++.+|.. .++ ...+.++++.-+..|..+.++...+++.+|+|+ T Consensus 288 n~eq~~~~~~~~l~P~~~~ie~~l~~------------~l~------~~~~~f~~~~ll~~d~~~~~~~~~~~~~~G~~T 349 (385) T protein:vir:10 288 NIDQIKATYLANLNSYVNPIVDELRL------------KMN------APDLELDIKDMLDVDDSALINQVSNLAKSGVLG 349 (385) T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH------------hhC------CceEEeechhhhccCHHHHHHHHHHHHhCCCcC Confidence 23222211222222222222222221 121 124777777777789999999999999999999 Q ss_pred HHHHHHhh--CCCCHHHHHHHHHHHHHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 470 TVEAIQRI--FKVPKKTAEQWLEEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 470 ~~~~l~~~--~~~~eeea~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) .-+++... .|+.++.. .+... +.+ .-..||+. T Consensus 350 ~NE~R~~~g~~p~p~~~~----~~~~~--------~~~----~~~~g~~~ 383 (385) T protein:vir:10 350 AEQAQFILTRSGFLPDNL----PEFKP--------LTT----QVKGGDEG 383 (385) T ss_pred HHHHHHHhCCCccCCCCC----ccccC--------ccc----ccCCCCCC Confidence 88865432 24432211 11000 000 01112222 No 185 >protein:vir:96980 Length: 409 # NCBI annotation: ORF008 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1643 # MgeName: 42e # Cross-refs: genbank:acc:YP_239857;genbank:gi:66395516;genbank:GeneID:5133013 Probab=96.99 E-value=0.00022 Score=40.63 Aligned_cols=389 Identities=12% Similarity=0.063 Sum_probs=155.9 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCcccccccccc-ChHHHH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTL-NLRKLS 79 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~l-n~~~~i 79 (517) |+++.|+|+.+-.-. + .++. ++ ...|..|....+..+... .. .+...+ .--..| T Consensus 4 ~~~~~~~k~~~~~~~--~-~~~~---~~-------------~~~~~~~~~~~~~~v~~~-----~a-~~~~~V~~ci~~i 58 (409) T protein:vir:96 4 ENIVTRIKKKLIDNW--I-DQSA---SK-------------LYDFSPWKNKSFWGVINN-----TL-ETNETIFSAITKL 58 (409) T ss_pred ccchhhhhhHHhhhh--h-cccc---cc-------------ccccccccCccccccchh-----hH-hhhHHHHHHHHHH Confidence 899999998653111 1 1111 11 001111211111111000 00 000000 001356 Q ss_pred HHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHH-HHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe-CCe-eEEE Q lcl|Aclame:pro 80 ADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQH-VFQHNKFIKNLSDYLEPTFALGGLTVRPYVD-NGE-IEFS 156 (517) Q Consensus 80 ~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~-~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d-~g~-~~i~ 156 (517) |+..|+|=+ .+.=... .....+...|.. --....-..-...++.+.+..|.+++.+..+ .|. ..+. T Consensus 59 a~~ia~lp~----~~~~~~~-------~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~ 127 (409) T protein:vir:96 59 SNSMASLPL----KMYEDYK-------VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLF 127 (409) T ss_pred HHhhhhCce----EEeeccc-------ccchhHHHHHhhhcccCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcEEEEE Confidence 666665421 1110111 111122222221 0000111222345566777789888887766 344 3455 Q ss_pred EEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCccccccccc Q lcl|Aclame:pro 157 WALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELY 236 (517) Q Consensus 157 ~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~ 236 (517) .++|+.+-++..+.++ ..+|+ + +. .+ |..+.+ + T Consensus 128 ~l~~~~v~v~~~~~~~-----------------~~~y~------------------~----~~-~~----g~~~~~---~ 160 (409) T protein:vir:96 128 LLNPDVVEMLIENQSR-----------------ELYYS------------------I----HA-AT----GNKLIV---H 160 (409) T ss_pred EEcCceeEEEEeCCCc-----------------EEEEE------------------E----Ec-CC----ceEEEE---c Confidence 5666666543222111 11111 0 00 00 111100 0 Q ss_pred CCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccc--eeecchHHhccCC Q lcl|Aclame:pro 237 EGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQR--TVFVSDVMLRTVP 314 (517) Q Consensus 237 ~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~--~i~v~~~~l~~~~ 314 (517) +. -+.||+.+.+ .+..+|+|.+.-+...++..... .++. -...+.+ -++.+...+.. T Consensus 161 ---~~----------evih~r~~~~----~~~~~G~s~l~~~~~~i~~~~~~-~~~~-~~~~~~~~~~i~~~~~~l~~-- 219 (409) T protein:vir:96 161 ---NM----------DMLHFKHIVA----SNMVQGISPIDVLKNTTDFDNAV-RTFN-LTEMQKPDSFMLKYGSNVST-- 219 (409) T ss_pred ---cc----------cEEEeCCCCC----CCccccccHHHHHHHHHHHHHHH-HHHH-HHhcCCCceeEEecCCCCCH-- Confidence 00 1345543211 12346888887776666543322 2221 1122222 12211111100 Q ss_pred CCcccccCccCCcccceeee---ecCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCcc-chHHH Q lcl|Aclame:pro 315 DESGMPPPQVFDPDVNVYKS---IRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSM-KTATE 390 (517) Q Consensus 315 ~~~~~~~~~~fd~~~~~y~~---~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~-~TAte 390 (517) ..-......|.. .|.. +-.-+++-.++.++......++.+..+...++|+...|++|..+|....+. .++.+ T Consensus 220 -e~~~~~~~~~~~---~~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~s~~e~ 295 (409) T protein:vir:96 220 -EKRQQVLEDFKQ---YYEENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEE 295 (409) T ss_pred -HHHHHHHHHHHH---HhhcCCCeeecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHH Confidence 000000001100 0110 000123334555555556667888887778889999999999998654322 22222 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCC-CCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCC Q lcl|Aclame:pro 391 IVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGE-IPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIP 469 (517) Q Consensus 391 i~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~-~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S 469 (517) .. ...++.+|.-++..|-...+. .++... ......+.++.++-+..|..+.++.+.+++.+|+|+ T Consensus 296 ~~-------------~~f~~~~l~P~~~~ie~~l~~-~Ll~~~~~~~g~~i~fd~~~ll~~d~~~~~e~~~~~~~~G~~T 361 (409) T protein:vir:96 296 LN-------------RFYLQHTLLPIVKQYEEEFNR-KLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYT 361 (409) T ss_pred HH-------------HHHHHHHHHHHHHHHHHHHHh-hcCCcccccCcceEEeechhhhccCHHHHHHHHHHHHhCCCCC Confidence 11 122222233333332211111 122111 112234555555655678899999999999999999 Q ss_pred HHHHHHhhCCCCHHH-HHHHHHHHHHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 470 TVEAIQRIFKVPKKT-AEQWLEEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 470 ~~~~l~~~~~~~eee-a~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) .-+++.. .|+..-+ .++-+- +....|.......+....|+|| T Consensus 362 ~NE~R~~-~g~~pi~ggD~~~~-----~~n~~~~~~~~~~~~~~~gG~~ 404 (409) T protein:vir:96 362 INDIREW-EDLPPVEGGDKPLI-----SGDLYPIDTPLELRKSLKGGDK 404 (409) T ss_pred HHHHHHH-hCCCCCCCcceeee-----cccccccccchhhcccccCCCC Confidence 9997654 4654321 211111 0011111111111222334444 No 186 >protein:vir:94002 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1487 # MgeName: jj50 # Cross-refs: genbank:acc:YP_764318;genbank:gi:115315632;genbank:GeneID:5176589 Probab=96.93 E-value=0.00025 Score=40.30 Aligned_cols=350 Identities=12% Similarity=0.070 Sum_probs=117.5 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccChHHHHH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLRKLSA 80 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~~~i~ 80 (517) ||+|.+++.+-++.... ..+.++... +-+..+...+ .| ..-..|| T Consensus 1 Mg~f~~~~~~~~~~~~~----~~~~~~~~~--~~~~~~~~~~-----v~------------------------~~v~~IA 45 (378) T protein:vir:94 1 MNLFGKVVSFSRGKLNN----DTQRVTAWQ--NEAVEYTSAF-----VT------------------------NIHNKIA 45 (378) T ss_pred CCccccchhcccccccC----Ccceeeeec--cchhHHHHHH-----HH------------------------HHHHHHH Confidence 99999999876543221 111111000 0000000000 00 0112333 Q ss_pred HHHhhhhcCCccee-EecCc--ccccccccchhHHHHHHHH-HHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeCCeeEEE Q lcl|Aclame:pro 81 DVLSGLVFNEQCEV-YVSDA--KDEEKKDNSFKTAHEFIQH-VFQHNKFIKNLSDYLEPTFALGGLTVRPYVDNGEIEFS 156 (517) Q Consensus 81 ~~~A~ll~~e~~~i-~~~~~--~~~~~~~~~~~~~~~~l~~-~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~g~~~i~ 156 (517) +..|+| |..+ .-... ..+.........+...|+. --.......-....+...+-.|.+++.+.++++..++ T Consensus 46 ~~iA~l----p~~~~~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~i~~~~~~~~g~~- 120 (378) T protein:vir:94 46 NEITKV----EFNHVKYKKSDVGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGEL- 120 (378) T ss_pred hhhhhC----ceeeEEEcccCcccccccccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeeCCCceE- Confidence 333332 1110 00000 0000000000111111110 0000011122233455666678888766665432111 Q ss_pred EEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCccccccccc Q lcl|Aclame:pro 157 WALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELY 236 (517) Q Consensus 157 ~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~ 236 (517) +++...++++ .|. + + T Consensus 121 -------~~l~p~~~~~------------------~~~------~-------------------------------~--- 135 (378) T protein:vir:94 121 -------LDLLFADDKK------------------EYK------P-------------------------------E--- 135 (378) T ss_pred -------EEEEecCCee------------------Eee------e-------------------------------e--- Confidence 1111111110 000 0 0 Q ss_pred CCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeecchHHhccCCCC Q lcl|Aclame:pro 237 EGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRTVFVSDVMLRTVPDE 316 (517) Q Consensus 237 ~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~l~~~~~~ 316 (517) + ++||+.|. +..-|.|.++.+. ++++.. +..++++-+ |+....- T Consensus 136 -----d----------iiH~~~~~------~~~~g~s~l~~~~---~~i~~~-------~~~~~~~gi-----l~~~~~l 179 (378) T protein:vir:94 136 -----E----------LVRLTSPF------YINEDTSILDNAL---ASIQTK-------LEQGKLRGL-----LKINAFL 179 (378) T ss_pred -----e----------eEEecCcC------CccchhHHHHHHH---HHHHHH-------Hhcccccce-----eeeCCcC Confidence 0 11222110 0001222222221 111111 112221111 1110000 Q ss_pred ccc---ccCccCCcccceeeeec---------CCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCc Q lcl|Aclame:pro 317 SGM---PPPQVFDPDVNVYKSIR---------MGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRS 384 (517) Q Consensus 317 ~~~---~~~~~fd~~~~~y~~~~---------~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~ 384 (517) ... .....|.. .|.... .-+++..++.++.+..+.+ +...+...++|+...|++|..+. T Consensus 180 ~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~~~~-~~~~~~~~~~Ia~~fgVP~~~l~----- 250 (378) T protein:vir:94 180 DIDNTQEYREKALT---TIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLN-KDEIDLIKSELLTGYFMNENILL----- 250 (378) T ss_pred CHHHHHHHHHHHHH---HHHHhhcccccccceecCCCceEEEccCChhhhh-HHHHHHHHHHHHHHhCCCHHHhc----- Confidence 000 00000000 000000 0012222333333333333 34556666789999999998773 Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC-------CCCCccceEEEeCCCccCCHHHHHH Q lcl|Aclame:pro 385 MKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGG-------EIPSAEHIGVDFDDGVFQDRSALLR 457 (517) Q Consensus 385 ~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~-------~~~~~~~v~i~f~d~i~~d~~~~~~ 457 (517) .|..+... ...++.+|.-++..|..-.+. .++.. ......++.++++.-...|..+.++ T Consensus 251 -~~~se~~~------------~~f~~~tL~P~~~~ie~~l~~-~Ll~~~er~~g~~~~~~~~~~f~~~~l~~~d~~~~~~ 316 (378) T protein:vir:94 251 -GTASQEQQ------------IYFYNSTIIPLLIQLEKELTY-KLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELID 316 (378) T ss_pred -CChHHHHH------------HHHHHHHHHHHHHHHHHHHHh-hcCChhHhhhhhhcccccceeecchhhhhcCHHHHHH Confidence 12222211 123333344433333321111 11110 0011224667777778889999999 Q ss_pred HHHHHHhcCCCCHHHHHHhhCCCCHH-HHHHHHHHHHHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 458 FYGQAKTFGFIPTVEAIQRIFKVPKK-TAEQWLEEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 458 ~~~~~~~~G~~S~~~~l~~~~~~~ee-ea~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) .+.+++.+|+|+.-++++. .|+..- ..++-+- ...-...+....++....+..+++| T Consensus 317 ~~~~~~~~G~~T~NE~R~~-~gl~p~~gGD~~~~--~~n~~~~~~~~~~~~~~~~~~~~~e 374 (378) T protein:vir:94 317 LYHENINGPIFTQNQLLVK-MGEQPIEGGDVYIA--NLNAVAVKNLSDLQGSRKDVTSTDE 374 (378) T ss_pred HHHHHHhCCCcCHHHHHHH-hCCCCCCCCCeeee--cccccccccchhhcCCcCCCCCCCC Confidence 9999999999999996654 455332 1211110 0000111111111222222222233 No 187 >protein:vir:101541 Length: 694 # NCBI annotation: gp17 # Family: family:all:297 # MgeID: mge:1477 # MgeName: Bcep43 # Cross-refs: genbank:acc:NP_958122;genbank:gi:41057668;genbank:GeneID:2716798 Probab=96.93 E-value=0.00025 Score=40.29 Aligned_cols=418 Identities=10% Similarity=0.047 Sum_probs=159.9 Q ss_pred CchHHHHHHHHH--HHHHH-hhcccchhhhccccCcCCHHHHHHHHHHHHHhcCC-CcccccccccCccccccccccChH Q lcl|Aclame:pro 1 MKVIQRIKNFFK--RGGYA-LSGQTLKSINDHEKINIDPNELARIERNLRQYEGD-YPQVEYINSQGKIQERDYMTLNLR 76 (517) Q Consensus 1 m~~~~~ik~~~~--~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~-~~~~~~~~~~~~~~~~~~~~ln~~ 76 (517) .++- ..|. -..+- .+.+...--.|-..+. .+.+ .||.+. ++-+.+.+.- ..++.= T Consensus 66 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l----~~~~~~~F~Gy~~la~l--------aQ~~ey 124 (694) T protein:vir:10 66 LRLA----RQFEVDVSNYTPRERRAASYALDFNGTS-----MDAL----SFVTSSGFPGFPTLVLL--------AQLPEY 124 (694) T ss_pred hhhh----hhccccccCCCccccchhhhhhccCccc-----ccch----hhhhccCcchHHHHHHH--------hhccch Confidence 1111 1110 00000 0000000000000000 1111 255553 2211111110 001111 Q ss_pred HHHHHHHhhhhcCCcce-------------eEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEE Q lcl|Aclame:pro 77 KLSADVLSGLVFNEQCE-------------VYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLT 143 (517) Q Consensus 77 ~~i~~~~A~ll~~e~~~-------------i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~ 143 (517) +..+..+|+-++.+=-. +.+.+......+.+ .-+.|+.-++.-++...++++++.+-.+||++ T Consensus 125 r~~~~~ia~e~~R~w~~~~~~~~e~~~~~g~~~~~~~~~~~d~d----qi~~L~~e~erl~V~~~l~eaik~aRlfGGa~ 200 (694) T protein:vir:10 125 RAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGD----QLKQINDEIERLRIRDAVRTTVIHDQAFGRAH 200 (694) T ss_pred hhHHHHHHHHhhcccceeccccchhhhhhcccccccccccccHH----HHHHHHHHHHHHHHHHHHHHHHHhhccccceE Confidence 23333444333322111 12211111111111 22345555566689999999999999999998 Q ss_pred EEEEEeCCe-----e---E-----------EEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecce Q lcl|Aclame:pro 144 VRPYVDNGE-----I---E-----------FSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKT 204 (517) Q Consensus 144 ~k~~~d~g~-----~---~-----------i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~ 204 (517) ...-+++.. + + +..++|..+.|-..+...- ....=.+.++| T Consensus 201 ~~i~I~gdd~~l~~PL~~~~~~I~kGslKGl~ViDp~~vtP~~~n~~dP---------~spdfgkP~~y----------- 260 (694) T protein:vir:10 201 PYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINP---------VADDFYKPSTW----------- 260 (694) T ss_pred EEEEeecCccccccccccccccccCcceeeeEeecccccccchhhhccc---------hhhccCCCceE----------- Confidence 665554321 1 0 2222222222211000000 00000011111 Q ss_pred eeccceEEEEEEEeecCCccccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHH Q lcl|Aclame:pro 205 EEGESLYVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKK 284 (517) Q Consensus 205 ~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~ 284 (517) +|. |++| |+..+ ..+.|. |+--.+|+. +.-.|+|....+.+-+++ T Consensus 261 -------~V~------------G~~I----H~SRL---~~f~g~--plPd~LKp~-------y~~~G~Sv~q~~~e~V~~ 305 (694) T protein:vir:10 261 -------WMI------------GTEV----HATRL---HTIVSR--PVGDMLKPT-------YSFAGISMTQLAMPYIDN 305 (694) T ss_pred -------EEe------------ceEE----eeeeE---EEecCC--Cchhhhhcc-------cccCcccHHHHHHHHHHH Confidence 110 1111 00000 111121 111112221 234699999999999999 Q ss_pred HHHHHHHHHHHHHhccceeecchHHhccCCCCcccccC---ccCCcccceeeeecCCCCCCcceEEecccChHHHHHHHH Q lcl|Aclame:pro 285 INDTYDQFWWEIKMGQRTVFVSDVMLRTVPDESGMPPP---QVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAIN 361 (517) Q Consensus 285 lD~~~s~~~~e~~~~~~~i~v~~~~l~~~~~~~~~~~~---~~fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~ 361 (517) .+.+-.....-+...+-..+ -.++.+...+++..... ..+..-+..+..+-.+.+...++ |.++...-.-..+. T Consensus 306 ~~rT~~~v~~Li~~~~v~~l-k~dla~~L~~g~~~~l~~R~eli~~~Rsn~G~~llDk~~Eefe--q~stslSGLddVi~ 382 (694) T protein:vir:10 306 WLRTRQSVSDIVKQFSVSGI-LMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDKATEEFF--QFNTPLSGLDALQA 382 (694) T ss_pred HHHHHhHHHHHHHhhhhHHH-HHHHHHhhcChhHHHHHHHHHHHHHhcCccceEEEecCCcceE--EEecccCCHHHHHH Confidence 98877766665533222222 11222222222221110 11111111122222232233344 44555566667777 Q ss_pred HHHHHHHHHhCCCccc-cccCCCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccc Q lcl|Aclame:pro 362 QALRTLEMELKLSVGT-FSFDGRSM-KTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEH 439 (517) Q Consensus 362 ~~l~~i~~~~g~s~~~-~~~~~~~~-~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~ 439 (517) .+...++-.++++... ||-.-.|. +|+..=...+.+..... .++.++.+|+.|+..|.. ..++.. +.+ T Consensus 383 qf~q~VAgaa~IPltkLfGqSPkGlNATGE~D~rnYYD~I~s~--Qe~~L~p~L~rl~~ii~r-----S~~G~i---dp~ 452 (694) T protein:vir:10 383 QAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAY--QRNALQQLMNDVIVMIQL-----SLFGAV---DPS 452 (694) T ss_pred HHHHHHHhhhcCchhhhhccCcccccccchhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH-----HhcCCC---CCc Confidence 7778888888887553 33333343 45543334443443333 467888888888776643 123333 236 Q ss_pred eEEEeCCCccCCHHHHHHH-------HHHHHhcCCCCHHHHHHhhCCCCHHHHHHHHHHHHHhccccCCCCC--c-cccC Q lcl|Aclame:pro 440 IGVDFDDGVFQDRSALLRF-------YGQAKTFGFIPTVEAIQRIFKVPKKTAEQWLEEIRKDQIELDPVTI--S-QRAQ 509 (517) Q Consensus 440 v~i~f~d~i~~d~~~~~~~-------~~~~~~~G~~S~~~~l~~~~~~~eeea~~el~~i~~E~~~~~~~~~--~-~~~~ 509 (517) +++.|+-=-..++.+.++. +..++.+|+++..+...++-...+--= ...+. +..+|... + .... T Consensus 453 i~~~fnPL~qmtd~EkAeI~~k~A~~d~~~~~~gvI~~~evr~rL~~d~~s~Y---~~~~D---~~d~p~~~~~~~~~~~ 526 (694) T protein:vir:10 453 IKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPY---AGKLD---ANDDPGVPADDDIDGV 526 (694) T ss_pred ceEEeCCCCCcCHHHHHHHHhhhhHHHHHHHHhcCCCHHHHHHHHhcCCCccc---ccccc---cccCCCcCccchhhhh Confidence 8899985444454433332 234456677777664444221100000 00000 01111100 0 0000 Q ss_pred ----CC-CCCCCC Q lcl|Aclame:pro 510 ----KR-MFGDEE 517 (517) Q Consensus 510 ----~~-~~G~ee 517 (517) ++ ..|+|+ T Consensus 527 ~~~~~~~~~~~~~ 539 (694) T protein:vir:10 527 LTYVQRLAEGGDT 539 (694) T ss_pred HhhhcCccccccc Confidence 00 011111 No 188 >protein:vir:3648 Length: 695 # NCBI annotation: gp17 # Family: family:all:297 # MgeID: mge:75 # MgeName: Bcep781 # Cross-refs: genbank:acc:NP_705643;genbank:gi:23752328;genbank:GeneID:955749 Probab=96.93 E-value=0.00025 Score=40.28 Aligned_cols=420 Identities=10% Similarity=0.045 Sum_probs=158.8 Q ss_pred CchHHHHHHH-HHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCC-CcccccccccCccccccccccChHHH Q lcl|Aclame:pro 1 MKVIQRIKNF-FKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGD-YPQVEYINSQGKIQERDYMTLNLRKL 78 (517) Q Consensus 1 m~~~~~ik~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~-~~~~~~~~~~~~~~~~~~~~ln~~~~ 78 (517) .++- |+| ++-.++-. ......+-..+. +...++.+ .||.+. ++-+.+.+.- -.++.=+. T Consensus 67 ~~~~---~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~l----~~~~~~~F~Gy~~la~l--------aQ~~eyr~ 127 (695) T protein:vir:36 67 LRLA---RQFEVDVSNYTP--RERRAASYALDF--NGTSMDAL----SFVTSSGFPGFPTLVLL--------AQLPEYRA 127 (695) T ss_pred cccc---eeceecccccCc--cccchhhhhhcc--cccccccc----hhhhccCcchHHHHHHH--------hhccchhh Confidence 2111 000 00000000 000000000000 00001111 245443 1111111100 00111123 Q ss_pred HHHHHhhhhcCCcce-------------eEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEE Q lcl|Aclame:pro 79 SADVLSGLVFNEQCE-------------VYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVR 145 (517) Q Consensus 79 i~~~~A~ll~~e~~~-------------i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k 145 (517) .+..+|+-++.+=-. +.+.+......+.+ .-+.|+.-++.-++...++++++.+-.+||++.. T Consensus 128 ~~~~ia~e~~R~w~~~~~~~~e~~~~~g~~~~~~~~~~~d~d----qik~L~~e~erL~V~~~l~eaik~aRlfGGa~~~ 203 (695) T protein:vir:36 128 MHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGD----QLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPY 203 (695) T ss_pred HHHHHHHHhhcccceecccchhhhhhccccccccccccCchH----HHHHHHHHHHHHHHHHHHHHHHHhhccccceEEE Confidence 333344333322111 12211111111111 2234555555567899999999999999999866 Q ss_pred EEEeCCe-----e---E-----------EEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceee Q lcl|Aclame:pro 146 PYVDNGE-----I---E-----------FSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEE 206 (517) Q Consensus 146 ~~~d~g~-----~---~-----------i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~ 206 (517) .-+++.. + + +..++|..+.|-..+...- ....=.+.++| T Consensus 204 i~i~gdd~~l~~PL~~~~~~I~kGslKGl~ViDp~~vtP~~~n~~dP---------~spdfgkP~~y------------- 261 (695) T protein:vir:36 204 FKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINP---------VADDFYKPSTW------------- 261 (695) T ss_pred EEeccCccccccccccccccccCcceeeeEeecccccccchhhhccc---------hhhccCCCceE------------- Confidence 5554321 1 0 2222222222211000000 00000011111 Q ss_pred ccceEEEEEEEeecCCccccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHH Q lcl|Aclame:pro 207 GESLYVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKIN 286 (517) Q Consensus 207 ~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD 286 (517) +|. |++| |+..+ ..+.|.+-| -.+|+. +.-.|+|....+.+-+++.+ T Consensus 262 -----~V~------------G~kI----H~SRL---~~f~g~plP--d~LKp~-------y~~~GiSv~q~~~e~V~~~~ 308 (695) T protein:vir:36 262 -----WMI------------GTEV----HATRL---HTIVSRPVG--DMLKPT-------YSFAGISMTQLAMPYIDNWL 308 (695) T ss_pred -----EEe------------ceEE----eeeeE---EEecCCCch--hhhhcc-------cccCcccHHHHHHHHHHHHH Confidence 111 1111 00000 111121111 112221 23469999999999999998 Q ss_pred HHHHHHHHHHHhccceeecchHHhccCCCCcccccC---ccCCcccceeeeecCCCCCCcceEEecccChHHHHHHHHHH Q lcl|Aclame:pro 287 DTYDQFWWEIKMGQRTVFVSDVMLRTVPDESGMPPP---QVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQA 363 (517) Q Consensus 287 ~~~s~~~~e~~~~~~~i~v~~~~l~~~~~~~~~~~~---~~fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~ 363 (517) .+-.....-+....-..+ -.++.+-..+++..... ..+..-+..+..+-.+.+...++ |.++...-.-..+..+ T Consensus 309 rT~~~v~~Li~~~~v~~l-k~dla~aL~~g~~~~l~~R~eli~~~Rsn~G~~llDk~~Eefe--q~stslSGLddVi~qf 385 (695) T protein:vir:36 309 RTRQSVSDIVKQFSVSGI-LMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDKATEEFF--QFNTPLSGLDALQAQA 385 (695) T ss_pred HHHhHHHHHHHhhhHHHH-HHHHHHhhcChhHHHHHHHHHHHHHhcCccceEEEecCCcceE--EEecccCCHHHHHHHH Confidence 877766665532222221 11222222222221110 11111111122222232233344 4455556666777777 Q ss_pred HHHHHHHhCCCccc-cccCCCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceE Q lcl|Aclame:pro 364 LRTLEMELKLSVGT-FSFDGRSM-KTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIG 441 (517) Q Consensus 364 l~~i~~~~g~s~~~-~~~~~~~~-~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~ 441 (517) +..++-.++++... ||-.-.|. .|+..=...+.+..... .++.++.+|+.|+..|.. ..++.. +.+++ T Consensus 386 ~q~VAgaa~IPltkLfGqSPkGlNATGE~D~rnYYD~I~s~--Qe~~L~p~L~rl~~ii~r-----S~~G~i---dpdi~ 455 (695) T protein:vir:36 386 QEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAY--QRNALQQLMNDVIVMIQL-----SLFGAV---DPSIK 455 (695) T ss_pred HHHHHhhhcCchhhhhccCcccccccchhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH-----HhcCCC---CCcce Confidence 78888888887553 33333343 45543333443443333 467888888888776643 123333 23688 Q ss_pred EEeCCCccCCHHHHHHH-------HHHHHhcCCCCHHHHHHhhCCCCHHHHHHHHHHHHHhccccCCCCC--c-cccC-- Q lcl|Aclame:pro 442 VDFDDGVFQDRSALLRF-------YGQAKTFGFIPTVEAIQRIFKVPKKTAEQWLEEIRKDQIELDPVTI--S-QRAQ-- 509 (517) Q Consensus 442 i~f~d~i~~d~~~~~~~-------~~~~~~~G~~S~~~~l~~~~~~~eeea~~el~~i~~E~~~~~~~~~--~-~~~~-- 509 (517) +.|+-=-..++.+.++. +..++.+|+++..+...++-...+--= ...+. +..+|... + .... T Consensus 456 ~~fnPL~qmtd~EkAeI~~k~A~~d~~~~~~gvI~~~evr~rL~~d~~s~Y---~~~~D---~~d~p~~~~~~~~~~~~~ 529 (695) T protein:vir:36 456 WQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPY---AGKLD---ANDDPGVPADDDIDGVLT 529 (695) T ss_pred EEeCCCCCcCHHHHHHHHhhhhHHHHHHHHhcCCCHHHHHHHHhcCCCccc---ccccc---cccCCCcCccchhhhhHh Confidence 99985444454433332 234456677777664444221100000 00000 01111100 0 0000 Q ss_pred --CC-CCCCCC Q lcl|Aclame:pro 510 --KR-MFGDEE 517 (517) Q Consensus 510 --~~-~~G~ee 517 (517) ++ ..|+|+ T Consensus 530 ~~~~~~~~~~~ 540 (695) T protein:vir:36 530 YVQRLAEGGDT 540 (695) T ss_pred hhcCccccccc Confidence 00 111111 No 189 >protein:vir:4337 Length: 434 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:93 # MgeName: D3 # Cross-refs: genbank:acc:NP_061500;genbank:gi:9635589;genbank:GeneID:1262858 Probab=96.90 E-value=0.00027 Score=40.15 Aligned_cols=410 Identities=11% Similarity=0.071 Sum_probs=163.0 Q ss_pred hHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccc-ccccc----ChHH Q lcl|Aclame:pro 3 VIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQER-DYMTL----NLRK 77 (517) Q Consensus 3 ~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~-~~~~l----n~~~ 77 (517) |.+.+.+.+-+......- .+.... .+-+.+++. .-|..|. |....- +..... ..+.+ .--. T Consensus 1 ~~~~l~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~-----~~~~~~~-g~~~~~------g~~v~~~~al~~~~V~~~i~ 66 (434) T protein:vir:43 1 MSKSLGKVLSSATSAPRS-SLFGWG-GKTIRLTDG-----AFWSQFL-GRESSS------GKKVTVDKAMKLSAVWACVR 66 (434) T ss_pred Cccchhhhhhhcccccch-hhhccc-ccccccCch-----HHHHHHh-cCCccC------CceechhhhhccHHHHHHHH Confidence 666666655432221100 000000 111222211 1244443 322110 000000 01111 1115 Q ss_pred HHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHH-HHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeCCee-EE Q lcl|Aclame:pro 78 LSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQH-VFQHNKFIKNLSDYLEPTFALGGLTVRPYVDNGEI-EF 155 (517) Q Consensus 78 ~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~-~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~g~~-~i 155 (517) .||+..|+| +..+--.+.+.. ........+...|.. --....-..-.+.++.+.+-.|.+++.+..++|++ .+ T Consensus 67 ~ia~~ia~l----p~~~~~~~~~g~-~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~~~~G~~~~L 141 (434) T protein:vir:43 67 LISTSVAGL----PLGVYERKADGS-RVDARSFPLYDVVHNSPNDDMTAFQFWQAMVASMLLWGNAYAEIRRAAGRPAAL 141 (434) T ss_pred HHHHhhhhC----ceEEEEEcCCCc-cccccccHHHHHHhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEeCCCcEEEE Confidence 666666654 222211111000 000111122222211 00001112333345566777888888777777764 45 Q ss_pred EEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccc Q lcl|Aclame:pro 156 SWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEEL 235 (517) Q Consensus 156 ~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~ 235 (517) ..++|+.+-|.. +.++. .+|+. +. .+ |..+.+. T Consensus 142 ~~l~p~~v~~~~-~~~g~-----------------~~y~~----------------------~~-~~----g~~~~~~-- 174 (434) T protein:vir:43 142 DFLLPSRVDLEC-DENGR-----------------LKYFY----------------------TT-KK----GARREIE-- 174 (434) T ss_pred EEEcCcceEEEE-cCCCe-----------------EEEEE----------------------Ee-cC----ceEEEEc-- Confidence 667777766532 22111 11110 00 00 1111100 Q ss_pred cCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHH-HHHHhc-cceeecchHHhccC Q lcl|Aclame:pro 236 YEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFW-WEIKMG-QRTVFVSDVMLRTV 313 (517) Q Consensus 236 ~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~-~e~~~~-~~~i~v~~~~l~~~ 313 (517) +.+ +.|++.+.. +..+|+|.+.-+...|.... ...++. +-|+.| ++..++ +.. T Consensus 175 ----~~e----------Vih~~~~~~-----dg~~G~spi~~~~~~i~~~~-~~~~~~~~~f~ng~~~~gil-----~~~ 229 (434) T protein:vir:43 175 ----RTN----------MLHIPAFTL-----DGRIGLSAIRYGVDVFGSVM-SAEDAANGTFKNGLLPTVAF-----KVD 229 (434) T ss_pred ----ccc----------EEEecCcCC-----CCccccCHHHHHHHHHHHHH-HHHHHHHHHHhccCCcceEE-----ecC Confidence 001 334543211 23468898877776665554 333343 334543 343332 111 Q ss_pred CCCcccccCccCCcccceeeee-cC-----CCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccch Q lcl|Aclame:pro 314 PDESGMPPPQVFDPDVNVYKSI-RM-----GTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKT 387 (517) Q Consensus 314 ~~~~~~~~~~~fd~~~~~y~~~-~~-----~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~T 387 (517) ..-.... ...+....+.+... +. =+++-.++.++......++.+..+...++|+...|++|..+|....+..+ T Consensus 230 ~~l~~e~-~~~~r~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~ 308 (434) T protein:vir:43 230 RILQPAQ-REEFREYVKSVSGAMNSGRSPVLEQGITPETIGINPVDAQLLETREHGVIEICRWFGVPPWMIGQTDKGSNW 308 (434) T ss_pred CCCCHHH-HHHHHHHHHHhcCccccCCccccCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCcCCccc Confidence 1100000 00011000111111 10 01222344455555567788888888889999999999999865443322 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCC Q lcl|Aclame:pro 388 ATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGF 467 (517) Q Consensus 388 Atei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~ 467 (517) .+.+.... ...++.+|.-++..|-...+. .++.......+.+.+++++-+..|..+.++...+++.+|+ T Consensus 309 ~s~~e~~~----------~~f~~~~L~P~~~~ie~~ln~-kL~~~~~~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~ 377 (434) T protein:vir:43 309 GTGLEQQM----------LAFLTFSISSITNQIQQCVNK-RLLTAPERIRYYAEFSLEGFLKADSAGRAAWYSTMAQNGF 377 (434) T ss_pred cchHHHHH----------HHHHHHHHHHHHHHHHHHHHh-hcCChhhhcCceEEEechhhhccCHHHHHHHHHHHHhCCC Confidence 22221111 112223333333333221111 1222221223456667667677899999999999999999 Q ss_pred CCHHHHHHhhCCCCHH-HHHHH--------HHHHHHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 468 IPTVEAIQRIFKVPKK-TAEQW--------LEEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 468 ~S~~~~l~~~~~~~ee-ea~~e--------l~~i~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) |+.-+++.. .|+..- ..++- +..+.+.+...+. ......+.+..-=+| T Consensus 378 ~T~NE~R~~-~gl~p~~ggD~~~~~~n~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 434 (434) T protein:vir:43 378 MTRNEGRRK-ENLPELPGGDILTVQSNLVPIDQLGQSNKSQAV-RAALMNWFSQPEPQE 434 (434) T ss_pred cCHHHHHHH-hCCCCCCCCCeEeeccCccchhhhhccCCCcch-hhhhhccCCCCCCCC Confidence 999997654 455431 11111 1111111111110 000000111111112 No 190 >protein:vir:78589 Length: 695 # NCBI annotation: NUDIX hydrolase # Family: family:all:297 # MgeID: mge:1854 # MgeName: BcepNY3 # Cross-refs: genbank:acc:YP_001294854;genbank:gi:149882917;genbank:GeneID:5291060 Probab=96.90 E-value=0.00027 Score=40.14 Aligned_cols=419 Identities=10% Similarity=0.045 Sum_probs=159.7 Q ss_pred CchHHHHHHH-HHHHHHH-hhcccchhhhccccCcCCHHHHHHHHHHHHHhcCC-CcccccccccCccccccccccChHH Q lcl|Aclame:pro 1 MKVIQRIKNF-FKRGGYA-LSGQTLKSINDHEKINIDPNELARIERNLRQYEGD-YPQVEYINSQGKIQERDYMTLNLRK 77 (517) Q Consensus 1 m~~~~~ik~~-~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~-~~~~~~~~~~~~~~~~~~~~ln~~~ 77 (517) .++- |+| ++-.++- .+.+...--.|-..+ .++.+ .||.+. ++-+.+.+.- -.++.=+ T Consensus 67 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l----~~~~~~~F~Gy~~la~l--------aQ~~eyr 126 (695) T protein:vir:78 67 LRLA---RQFEVDVSNYTPRERRAASYALDFNGT-----SMDAL----SFVTSSGFPGFPTLVLL--------AQLPEYR 126 (695) T ss_pred cccc---eeceeccccCCccccchhhhhhccccc-----ccccc----hhhhccCcchHHHHHHH--------hhccchh Confidence 2211 110 0000000 000000000000000 01111 245443 1111111100 0011112 Q ss_pred HHHHHHhhhhcCCcce-------------eEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEE Q lcl|Aclame:pro 78 LSADVLSGLVFNEQCE-------------VYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTV 144 (517) Q Consensus 78 ~i~~~~A~ll~~e~~~-------------i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~ 144 (517) ..+..+|+-++.+=-. +.+.+......+.+ .-+.|+.-++.-++...++++++.+-.+||++. T Consensus 127 ~~~~~ia~e~~R~w~~~~~~~~e~~~~~g~~~~~~~~~~~d~d----qi~~L~~e~erL~V~~~l~eaik~aRlfGGa~~ 202 (695) T protein:vir:78 127 AMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGD----QLKQINDEIERLRIRDAVRTTVIHDQAFGRAHP 202 (695) T ss_pred hHHHHHHHHhhcccceeccccchhhhhhcccccccccccccHH----HHHHHHHHHHHHHHHHHHHHHHHhhccccceEE Confidence 3333344333322111 11211111111111 223455555666899999999999999999986 Q ss_pred EEEEeCCe-----e---E-----------EEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeeccee Q lcl|Aclame:pro 145 RPYVDNGE-----I---E-----------FSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTE 205 (517) Q Consensus 145 k~~~d~g~-----~---~-----------i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~ 205 (517) ..-+++.. + + +..++|..+.|-..+...- ....=.+.++| T Consensus 203 ~i~i~gdd~~l~~PL~~~~~~I~kGslKGl~ViDp~~vtP~~~n~~dP---------~spdfgkP~~y------------ 261 (695) T protein:vir:78 203 YFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINP---------VADDFYKPSTW------------ 261 (695) T ss_pred EEEeccCccccccccccccccccCcceeeeEeecccccccchhhhccc---------hhhccCCCceE------------ Confidence 65554321 1 0 2222222222211000000 00000011111 Q ss_pred eccceEEEEEEEeecCCccccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHH Q lcl|Aclame:pro 206 EGESLYVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKI 285 (517) Q Consensus 206 ~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~l 285 (517) +|. |++| |+..+ ..+.|.+-| -.+|+. +.-.|+|....+.+-+++. T Consensus 262 ------~V~------------G~kI----H~SRL---~~f~g~plP--d~LKp~-------y~~~GiSv~q~~~e~V~~~ 307 (695) T protein:vir:78 262 ------WMI------------GTEV----HATRL---HTIVSRPVG--DMLKPT-------YSFAGISMTQLAMPYIDNW 307 (695) T ss_pred ------EEe------------ceEE----eeeeE---EEecCCCch--hhhhcc-------cccCcccHHHHHHHHHHHH Confidence 111 1111 00000 111121111 112221 2346999999999999999 Q ss_pred HHHHHHHHHHHHhccceeecchHHhccCCCCcccccC---ccCCcccceeeeecCCCCCCcceEEecccChHHHHHHHHH Q lcl|Aclame:pro 286 NDTYDQFWWEIKMGQRTVFVSDVMLRTVPDESGMPPP---QVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQ 362 (517) Q Consensus 286 D~~~s~~~~e~~~~~~~i~v~~~~l~~~~~~~~~~~~---~~fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~ 362 (517) +.+-.....-+...+-..+ -.++.+...+++..... ..+..-+..+..+-.+.+...++ |.++...-.-..+.. T Consensus 308 ~rT~~~v~~Li~~~~v~~l-k~dla~~L~~g~~~~l~~R~eli~~~Rsn~G~~llDk~~Eefe--q~stslSGLddVi~q 384 (695) T protein:vir:78 308 LRTRQSVSDIVKQFSVSGI-LMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDKATEEFF--QFNTPLSGLDALQAQ 384 (695) T ss_pred HHHHhHHHHHHHhhhhHHH-HHHHHHhhcChhHHHHHHHHHHHHHhcCccceEEEecCCcceE--EEecccCCHHHHHHH Confidence 8877766665533222222 11222222222221110 11111111122222232233344 445555666677777 Q ss_pred HHHHHHHHhCCCccc-cccCCCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccce Q lcl|Aclame:pro 363 ALRTLEMELKLSVGT-FSFDGRSM-KTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHI 440 (517) Q Consensus 363 ~l~~i~~~~g~s~~~-~~~~~~~~-~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v 440 (517) +...++-.++++... ||-.-.|. .|+..=...+.+..... .++.++.+|+.|+..|.. ..++.. +.++ T Consensus 385 f~q~VAgaa~IPltkLfGqSPkGlNATGE~D~rnYYD~I~s~--Qe~~L~p~L~rl~~ii~r-----S~~G~i---dpdi 454 (695) T protein:vir:78 385 AQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAY--QRNALQQLMNDVIVMIQL-----SLFGAV---DPSI 454 (695) T ss_pred HHHHHHhhhcCchhhhhccCCccccccchhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH-----HhcCCC---CCcc Confidence 778888888887553 33333343 45543333443443333 467888888888777643 123333 2358 Q ss_pred EEEeCCCccCCHHHHHHH-------HHHHHhcCCCCHHHHHHhhCCCCHHHHHHHHHHHHHhccccCCCCC--c-cccC- Q lcl|Aclame:pro 441 GVDFDDGVFQDRSALLRF-------YGQAKTFGFIPTVEAIQRIFKVPKKTAEQWLEEIRKDQIELDPVTI--S-QRAQ- 509 (517) Q Consensus 441 ~i~f~d~i~~d~~~~~~~-------~~~~~~~G~~S~~~~l~~~~~~~eeea~~el~~i~~E~~~~~~~~~--~-~~~~- 509 (517) ++.|+-=-..++.+.++. +..++.+|+++..+...++-...+--= ...+. +..+|... + .... T Consensus 455 ~~~fnPL~qmtd~EkAeI~~k~A~~d~~~~~~gvI~~~evr~rL~~d~~s~Y---~~~~D---~~d~p~~~~~~~~~~~~ 528 (695) T protein:vir:78 455 KWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPY---AGKLD---ANDDPGVPADDDIDGVL 528 (695) T ss_pred eEEeCCCCCcCHHHHHHHHhhhhHHHHHHHHhcCCCHHHHHHHHhcCCCccc---ccccc---cccCCCcCccchhhhhH Confidence 899985444454433332 234456677777664444221100000 00000 01111100 0 0000 Q ss_pred ---CC-CCCCCC Q lcl|Aclame:pro 510 ---KR-MFGDEE 517 (517) Q Consensus 510 ---~~-~~G~ee 517 (517) ++ ..|+|+ T Consensus 529 ~~~~~~~~~~~~ 540 (695) T protein:vir:78 529 TYVQRLAEGGDT 540 (695) T ss_pred hhhcCccccccc Confidence 00 011111 No 191 >protein:vir:93867 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1479 # MgeName: 712 # Cross-refs: genbank:acc:YP_764264;genbank:gi:115315577;genbank:GeneID:5141561 Probab=96.90 E-value=0.00027 Score=40.13 Aligned_cols=348 Identities=12% Similarity=0.085 Sum_probs=116.8 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccc--cCcCCH-HHHHHHHHHHHHhcCCC---cccccccccCccccccccccC Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHE--KINIDP-NELARIERNLRQYEGDY---PQVEYINSQGKIQERDYMTLN 74 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~--~i~~~~-~~~~~i~~~~~~Y~g~~---~~~~~~~~~~~~~~~~~~~ln 74 (517) ||+|.+++.|-+.... . ....++.-. .+.... -.++.| ..-.+.- +..+++...+...... T Consensus 1 Mg~f~~~~~f~~~~~~-~---~~~~~~~~~~~~~~~~~~~v~~~i----~~Ia~~iA~lp~~~~~~~~~~~~~~~----- 67 (378) T protein:vir:93 1 MNLFGKVVSFSRGKLN-N---DTQRVTAWQNEAVEYTSAFVTNIH----NKIANEITKVEFNHVKYKKSDVGSDT----- 67 (378) T ss_pred CccchhhhhhhccccC-C---CcceeeecccchhHHHHHHHHHHH----HHHHhhhhhCceeeEEEccccccccc----- Confidence 9999999985432211 1 111111100 000000 000001 0111110 0101111100000000 Q ss_pred hHHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeCCeeE Q lcl|Aclame:pro 75 LRKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDNGEIE 154 (517) Q Consensus 75 ~~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~g~~~ 154 (517) ....+-+.++.||-.+|... ....+++ ...+.+.+-.|.+++.+..+++..+ T Consensus 68 ~~~~~~~~l~~lL~~~PN~~---------------~t~~~f~-------------~~~~~~lll~Gn~~i~~~~~~~~g~ 119 (378) T protein:vir:93 68 LISMAGSDLDEVLNWSPKGE---------------RNSMDFW-------------RKVIKKLLRAPYVDLYAVFDDNTGE 119 (378) T ss_pred ccccccchHHHHHhhcCCCC---------------CCHHHHH-------------HHHHHHHhhcCceEEEEEeecCCce Confidence 00011122333332222110 0112222 2334555666877776655532111 Q ss_pred EEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCccccccc Q lcl|Aclame:pro 155 FSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEE 234 (517) Q Consensus 155 i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~ 234 (517) + +.+.....+. .| +..+ T Consensus 120 ~--------~~l~~~~~~~------------------~~-------------------------------------~~~d 136 (378) T protein:vir:93 120 L--------LDLLFADDKK------------------EY-------------------------------------KTEE 136 (378) T ss_pred E--------EEEEecCCee------------------Ee-------------------------------------ccce Confidence 1 1110011000 00 0000 Q ss_pred ccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeecchHHhccCC Q lcl|Aclame:pro 235 LYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRTVFVSDVMLRTVP 314 (517) Q Consensus 235 ~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~l~~~~ 314 (517) +.|++.|. +..-|.|.++. +.++++.. +..++++-+ |+... T Consensus 137 ------------------iih~r~~~------~~~~~~s~l~~---~~~~i~~~-------~~~~~~~g~-----l~~~~ 177 (378) T protein:vir:93 137 ------------------LVRLTSPF------YINEDTSILDN---ALASIQTK-------LEQGKLRGL-----LKINA 177 (378) T ss_pred ------------------eEEecCcc------ccchhhHHHHH---HHHHHHHH-------HhcCcccce-----eeeCC Confidence 11222110 00002222211 11222211 122222111 11100 Q ss_pred CCcc---cccCccCCcccceeeeecC---------CCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCC Q lcl|Aclame:pro 315 DESG---MPPPQVFDPDVNVYKSIRM---------GTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDG 382 (517) Q Consensus 315 ~~~~---~~~~~~fd~~~~~y~~~~~---------~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~ 382 (517) .-.. ......|.. .|..... -+++..++.++.+..+.+ +..+....++|+...|++|..+. T Consensus 178 ~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~-~~~~~~~~~~Ia~~fgVPp~~l~--- 250 (378) T protein:vir:93 178 FLDIDNTQEYREKALT---TIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLN-KDEIDLIKSELLTGYFMNENILL--- 250 (378) T ss_pred cCCHHHHHHHHHHHHH---HHHHhhcccccccceEcCCCceEEEccCChhhhh-HHHHHHHHHHHHHHhCCCHHHhc--- Confidence 0000 000000000 0000000 012223444444433333 35556667789999999998773 Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC-------CCCCccceEEEeCCCccCCHHHH Q lcl|Aclame:pro 383 RSMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGG-------EIPSAEHIGVDFDDGVFQDRSAL 455 (517) Q Consensus 383 ~~~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~-------~~~~~~~v~i~f~d~i~~d~~~~ 455 (517) + +++|... ...++.+|..++..|..-.+. .++.. .......+.++++.-...|..+. T Consensus 251 -g--~~~e~~~------------~~f~~~tl~P~~~~ie~~l~~-kLl~~~er~~~~~~~~~~~~~fd~~~l~~~d~~~~ 314 (378) T protein:vir:93 251 -G--TATQEQQ------------IYFYNSTIIPLLIQLEKELTY-KLISTNRRRVVKGNLYYERIIVDNQLFKFATLKEL 314 (378) T ss_pred -C--CcHHHHH------------HHHHHHHHHHHHHHHHHHHHh-hcCChhHhhhhhhcccccceeeccchhhhcCHHHH Confidence 1 2222211 122333333333333221111 11110 00112346677777788899999 Q ss_pred HHHHHHHHhcCCCCHHHHHHhhCCCCHHH-HHHHHHHHHHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 456 LRFYGQAKTFGFIPTVEAIQRIFKVPKKT-AEQWLEEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 456 ~~~~~~~~~~G~~S~~~~l~~~~~~~eee-a~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) ++...+++.+|+|+.-+++++ .|+..-+ .++-+- ..--...+....++....+..+++| T Consensus 315 ~~~~~~~~~~G~~t~NE~R~~-~gl~p~~ggD~~~~--~~n~~~~~~~~~~~~~~~~~~~~~e 374 (378) T protein:vir:93 315 IDLYHENINGPIFTQNQLLVK-MGEQPIEGGDVYIA--NLNAVAVKNLSDLQGSRKDVTSTDE 374 (378) T ss_pred HHHHHHHHhCCCcCHHHHHHH-hCCCCCCCCCeeee--ccccccccchhhhcCccCCCCCCCC Confidence 999999999999999997654 4654321 111010 0000011111112222222222333 No 192 >protein:vir:104259 Length: 403 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1504 # MgeName: T5 # Cross-refs: genbank:acc:YP_006980;genbank:gi:46401881;genbank:GeneID:2777676 Probab=96.87 E-value=0.00029 Score=40.01 Aligned_cols=385 Identities=9% Similarity=0.017 Sum_probs=143.8 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcC--CHHHHHHHHHHHHHhcCCCcccccccccCccccccccccChHHH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINI--DPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLRKL 78 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~~~ 78 (517) ||++++++..+.-+-.. ....+.+....+... +.+.+. ++-.-|. --+. T Consensus 1 mg~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~t~~~~~---~~~~v~~------------------------cv~~ 51 (403) T protein:vir:10 1 MGFKSWITEKLNPGQRI--IRDMEPVSHRTNRKPFTTGQAYS---KIEILNR------------------------TANM 51 (403) T ss_pred Ccchhhhhhccchhhhh--hhcccccccccCCcccccHHHHH---HHHHHHH------------------------HHHH Confidence 99998887776422221 112222222111110 111010 0000110 0134 Q ss_pred HHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHh-hhhHHHHHHHHHHHHHhhCCEEEEEEEeCCeeEEEE Q lcl|Aclame:pro 79 SADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQ-HNKFIKNLSDYLEPTFALGGLTVRPYVDNGEIEFSW 157 (517) Q Consensus 79 i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~-~n~f~~~~~~~~~~a~~~G~~~~k~~~d~g~~~i~~ 157 (517) ||+..|++-+.-...... ... ........+...|+.-=. ......-.+..+.+++-.|.+++. .+... +-. T Consensus 52 Ia~~ia~~p~~v~~~~~~---~~~-~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~~ll~Gnayi~--~~~~~--l~~ 123 (403) T protein:vir:10 52 VIDSAAECSYTVGDKYNI---VTY-ANGVKTKTLDTLLNVRPNPFMDISTFRRLVVTDLLFEGCAYIY--WDGTS--LYH 123 (403) T ss_pred HHHHHhhCceeEeecccc---ccc-ccccccchHHHHHhhCCCCCCCHHHHHHHHHHHHhhcCCeEEE--EeCce--eEe Confidence 555555432210000000 000 000000111112211000 001112222334455556766643 33322 334 Q ss_pred EcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccccC Q lcl|Aclame:pro 158 ALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYE 237 (517) Q Consensus 158 v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~ 237 (517) ++++.+-+ ..+.++ .+|. + ..+. .++ |. T Consensus 124 l~~~~~~v-~~~~~~------------------~~~~---~-~~~~--------~~~---~~------------------ 151 (403) T protein:vir:10 124 VPAALMQV-EADANK------------------FIKK---F-IFNN--------QIN---YR------------------ 151 (403) T ss_pred ecCcceEE-EEcCCc------------------eEEE---E-EecC--------cee---ec------------------ Confidence 55554332 111111 1110 0 0000 000 00 Q ss_pred CCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeecchHHhccCCCCc Q lcl|Aclame:pro 238 GMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRTVFVSDVMLRTVPDES 317 (517) Q Consensus 238 ~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~l~~~~~~~ 317 (517) +.+ +.+|+...........+.|+|.+.-+...++....+-.--.+-|+.|...-.| |+....-. T Consensus 152 --~~e----------iih~~~~~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gi----l~~~~~l~ 215 (403) T protein:vir:10 152 --VDE----------IIFIKDNSYVCGTNSQISGQSRVATVIDSLEKRSKMLNFKEKFLDNGTVIGLI----LETDEILN 215 (403) T ss_pred --ccc----------eEEecccccccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceE----EEeCCCCC Confidence 000 12222111111112345788888777777766544443334455655432222 22211111 Q ss_pred ccc---cCccCCcccceeeeecC------CCCCCcceEEec--ccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccc Q lcl|Aclame:pro 318 GMP---PPQVFDPDVNVYKSIRM------GTDEEFVKDVTH--DIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMK 386 (517) Q Consensus 318 ~~~---~~~~fd~~~~~y~~~~~------~~~~~~v~~~~~--dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~ 386 (517) ... ....|. ..|.+... =+++-.++.++. .....++.+..+...+.|+..-|++|..+|.... . T Consensus 216 ~e~~~~~~~~~~---~~~~g~~n~g~~~vl~~g~~~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~--s 290 (403) T protein:vir:10 216 KKLRERKQEELQ---LDYNPSTGQSSVLILDGGMKAKPYSQISSFKDLDFKEDIEGFNKSICLAFGVPQVLLDGGNN--A 290 (403) T ss_pred HHHHHHHHHHHH---HHhCCcccCcceeecCCCceeEEecccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCC--c Confidence 110 000010 01111100 012222444442 2334567777778888999999999999864321 1 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCC--ccCCHHHHHHHHHHHHh Q lcl|Aclame:pro 387 TATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDG--VFQDRSALLRFYGQAKT 464 (517) Q Consensus 387 TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~--i~~d~~~~~~~~~~~~~ 464 (517) +..+. ..+....++.-+...++.+|... + ...+.++++.- +..|..+.++.+..++. T Consensus 291 n~e~~--~~~f~~~tl~P~~~~ie~~l~~~------------L-------~~~~~~d~~~~~~l~~D~~~~~~~~~~~~~ 349 (403) T protein:vir:10 291 NIRPN--IELFYYMTIIPMLNKLTSSLTFF------------F-------GYKITPNTKEVAALTPDKEAEAKHLTSLVN 349 (403) T ss_pred CHHHH--HHHHHHHHHHHHHHHHHHHHHHh------------c-------CceeeeccchhhhcccCHHHHHHHHHHHHh Confidence 22111 11111122222222233332221 1 12355555532 55688888888889999 Q ss_pred cCCCCHHHHHHhh--CCCCHHHHHHHHHHHHHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 465 FGFIPTVEAIQRI--FKVPKKTAEQWLEEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 465 ~G~~S~~~~l~~~--~~~~eeea~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) +|+|+.-+++... .++.++.+.+-+--..- +....+...++..++..+++-| T Consensus 350 ~G~lT~NE~R~~~gl~pi~~~~~d~~~~p~n~-~~~~~~~~~~e~~~~~~~~~g~ 403 (403) T protein:vir:10 350 NGIITGNEARSELNLEPLDDEQMNKIRIPANV-AGSATGVSGQEGGRPKGSTEGD 403 (403) T ss_pred CCCcCHHHHHHHhCCCCCCccccccccccccc-ccccccCCCCcCCCCCCCcCCC Confidence 9999999876543 23444444433311111 1111122222222222222222 No 193 >protein:vir:3868 Length: 417 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:82 # MgeName: A2 # Cross-refs: genbank:acc:NP_680485;swissprot:trembl:q8ltc2;genbank:gi:22296525;interpro:IPR006427;interpro:IPR006944;uniprot:Q8LTC2;genbank:GeneID:951699 Probab=96.86 E-value=0.00029 Score=39.97 Aligned_cols=381 Identities=11% Similarity=0.052 Sum_probs=142.9 Q ss_pred hhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccChH------HHHHHHHhhhhcCCc Q lcl|Aclame:pro 18 LSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLR------KLSADVLSGLVFNEQ 91 (517) Q Consensus 18 ~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~------~~i~~~~A~ll~~e~ 91 (517) |.+ +..... . ++. .|..-+... .+..-.. |..... ..+..+ +.||+..|++ + T Consensus 1 m~~--~~~~~~--~--~~~-------~~~~~~~~~--~~~~~~~-g~~~~~--~Al~~~~V~~cv~~ia~~iA~l----p 58 (417) T protein:vir:38 1 MKL--FRGLAT--E--VDP-------HWADHLLDS--GVIPSFR-GGYLGI--SALRNSDVLTAVSIVSGDVSRF----P 58 (417) T ss_pred Ccc--cccccc--C--CCc-------cchhhhccc--ccccccC-Cceech--hhcccHHHHHHHHHHHHhhccC----e Confidence 111 000000 0 000 011111100 0000000 000000 111111 4566666654 3 Q ss_pred ceeEecCcccccccccchhHHHHHHHH-HHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe--CCee-EEEEEcCCeEEEEE Q lcl|Aclame:pro 92 CEVYVSDAKDEEKKDNSFKTAHEFIQH-VFQHNKFIKNLSDYLEPTFALGGLTVRPYVD--NGEI-EFSWALANAFYPLR 167 (517) Q Consensus 92 ~~i~~~~~~~~~~~~~~~~~~~~~l~~-~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d--~g~~-~i~~v~a~~~~P~~ 167 (517) ..+.-.+.+ ...+ ...+...|+. --.......-.+..+.+.+-.|.+++.+.-| +|.+ .+.+++|+++.+.. T Consensus 59 ~~~~~~~~~--~~~~--~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~y~~i~r~~~g~~~~~l~~l~p~~v~v~~ 134 (417) T protein:vir:38 59 LVITDSSTD--EVID--LANIEYLMNTKVNKRLSAYQWKFPMMVNAILTGNAYSRIVRDPITNEPAMFEFYAPSQTQVDT 134 (417) T ss_pred eEEEEcCCc--ceec--cchHHHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCCEEEEEEEeCCceEEEEE Confidence 333222111 1110 1111222211 0001112222334455667778888877765 3433 36678888776633 Q ss_pred EcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccccCCCCcceEEcC Q lcl|Aclame:pro 168 SNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQG 247 (517) Q Consensus 168 ~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g 247 (517) .+.+++ +|+ +.... +... ..+. +.+ T Consensus 135 ~~~~~~------------------~y~---~~~~~------~~~~---~~~~--------------------~~d----- 159 (417) T protein:vir:38 135 SDPDNI------------------IYR---FTPYN------SSMQ---KVCG--------------------FED----- 159 (417) T ss_pred cCCCeE------------------EEE---EEEcC------CcEE---EEec--------------------Ccc----- Confidence 222211 111 00000 0000 0010 000 Q ss_pred CCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhc-cceeecchHHhccCCCCcc---cccCc Q lcl|Aclame:pro 248 LSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMG-QRTVFVSDVMLRTVPDESG---MPPPQ 323 (517) Q Consensus 248 ~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~-~~~i~v~~~~l~~~~~~~~---~~~~~ 323 (517) +.||+.+.. +..+|+|.+.-+...|......-.-..+-|+.| .+..++ .....-.. ..... T Consensus 160 -----viH~r~~~~-----d~~~G~s~l~~~~~~i~~~~~~~~~~~~~f~ng~~p~~il-----~~~~~l~~e~~~~~~~ 224 (417) T protein:vir:38 160 -----VIHWKFFSY-----DTIMGRSPLLSLGDEIGLQESGVSTLQKFFKSGLKGSIIK-----AKESRLSAEARQKIRE 224 (417) T ss_pred -----eEEecCCCC-----CCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEE-----EeCCCCCHHHHHHHHH Confidence 345554311 224699988777777665444433334445654 343332 21111110 00001 Q ss_pred cCCcccceeeeecCC-----CCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHHHHHHHHH Q lcl|Aclame:pro 324 VFDPDVNVYKSIRMG-----TDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVSENDLT 398 (517) Q Consensus 324 ~fd~~~~~y~~~~~~-----~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a~~~~~ 398 (517) .|. ..|.+.+.+ +++..++.++......++.+..+...+.|+...|++|..+|... ...++.+. . T Consensus 225 ~~~---~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~-~~s~~e~~---~--- 294 (417) T protein:vir:38 225 DFE---RAQAGADAGSPIIVDATMDYQPLEVDTNVLNLINSNNYSTAQIAKALRVPAYRLAQNS-PNQSVKQL---A--- 294 (417) T ss_pred HHH---HHhcccccCCceeccCCceEEEccCCHHHHHHHHHHHhhHHHHHHHhCCCHHHhCCCC-cchhHHHH---H--- Confidence 110 112111100 12223444444444456667777778889999999999997322 11222111 1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCCHHHHHHhhC Q lcl|Aclame:pro 399 YRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTVEAIQRIF 478 (517) Q Consensus 399 ~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~~~l~~~~ 478 (517) ...++.+|.-++..|....+. .++.... .....+.|+..- .+. .....+..++.+|+|+.-+++... T Consensus 295 -------~~~~~~tl~P~~~~ie~~l~~-~Ll~~~~--~~~~~~~fd~~~-l~~-~~~~~~~~~~~~G~~T~NE~R~~~- 361 (417) T protein:vir:38 295 -------DDYIRNDLPFYFEPITSEFEL-KLLDDAQ--RHQYCIGFDTKS-VNG-LPIADVNTAVNGGLWTGNEGRAEL- 361 (417) T ss_pred -------HHHHHHHHHHHHHHHHHHHHh-hhcChhh--cccceEEechhh-hhH-HHHHHHHHHHhCCCcCHHHHHHHh- Confidence 122333444444443322211 1222111 123556676432 222 234456677899999999976543 Q ss_pred CC---CHHHHHHH--------HHHHHHhcccc--CCCCCccccCCCCC--CCCC Q lcl|Aclame:pro 479 KV---PKKTAEQW--------LEEIRKDQIEL--DPVTISQRAQKRMF--GDEE 517 (517) Q Consensus 479 ~~---~eeea~~e--------l~~i~~E~~~~--~~~~~~~~~~~~~~--G~ee 517 (517) |+ .+.++++- +....+++... .....+.+...+.+ |+++ T Consensus 362 gl~pi~~g~~d~~~~~~n~~~~d~~~~~~~~~~~~~kgg~~~~~~~~~~~~~~~ 415 (417) T protein:vir:38 362 GKKPLKDPNMDRIQSTLNTVFLDQKEAYQAEHAAELKGGDTNAKGNQNGSGTNA 415 (417) T ss_pred CCCCCCCCCCCeeeecccccccccccccccccccccCCCCCCCCCCCcCCCCcC Confidence 54 22222111 11111111111 11122222222223 3333 No 194 >protein:vir:7853 Length: 518 # NCBI annotation: gp10 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:150 # MgeName: CJW1 # Cross-refs: genbank:acc:NP_817460;genbank:gi:29565889;genbank:GeneID:1259085 Probab=96.81 E-value=0.00032 Score=39.73 Aligned_cols=402 Identities=12% Similarity=0.019 Sum_probs=155.4 Q ss_pred HHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCc---ccc-cccccCcccccccccc-ChHHHHHHHHhhhhc Q lcl|Aclame:pro 14 GGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYP---QVE-YINSQGKIQERDYMTL-NLRKLSADVLSGLVF 88 (517) Q Consensus 14 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~---~~~-~~~~~~~~~~~~~~~l-n~~~~i~~~~A~ll~ 88 (517) |.... .+. -.+|++.+....-...|.+.+. .+. .....+.... +...+ .--..||+..|++ T Consensus 1 ~~~~~-~~~----------~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~V~acV~~IA~~iA~l-- 66 (518) T protein:vir:78 1 MLLAN-GQT----------LSAPAMAELSPQMQDSYYYAPAVGMQLERQFSLYGGIYK-NQPWVRTVIAKRAQALARL-- 66 (518) T ss_pred CcccC-cee----------eccchhhhhhhhhhhcccccceeceecccccchhhHHhh-hhHHHHHHHHHHHHhhccC-- Confidence 11111 111 1234333321111112222110 000 0000000000 00000 1114566666654 Q ss_pred CCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeC-Cee-EEEEEcCCeEEEE Q lcl|Aclame:pro 89 NEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDN-GEI-EFSWALANAFYPL 166 (517) Q Consensus 89 ~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~-g~~-~i~~v~a~~~~P~ 166 (517) +..+.-.+.+... ..........+.+--.......-.+.++.+.+..|.+++.+..+. |.+ .+..++|+.+.+. T Consensus 67 --p~~l~~~~~~~~~--~~~~~~~~~Ll~~PN~~~t~~~F~~~lv~~lll~Gnay~~i~r~~~G~~~~L~~l~p~~Vtv~ 142 (518) T protein:vir:78 67 --PVKCMFTSGDTET--EEHDTGYAKLLADPCEYLDPFAFWEWVASTLDIYGETYLAIQKNKSGTPEKLMPMHPSRVAIK 142 (518) T ss_pred --ceEEEEEcCCccc--cccchHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEECCCceEEE Confidence 3333221111100 011111112222110000111223344556666788888777664 543 4666777776653 Q ss_pred EEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccccCCCCcceEEc Q lcl|Aclame:pro 167 RSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQ 246 (517) Q Consensus 167 ~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~ 246 (517) ....++.. .| ++ ..... .-+..+. ++ T Consensus 143 ~~~~~~~~-----------------~y------------------~~-----~~~~~-~~~~~~~---~~---------- 168 (518) T protein:vir:78 143 RNSRTGRY-----------------EY------------------YF-----QAGAG-VGTQLVS---FA---------- 168 (518) T ss_pred EcCCCCEE-----------------EE------------------EE-----EecCC-ccceeEE---ec---------- Confidence 22111110 01 00 00000 0000000 00 Q ss_pred CCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhc-cceeec--chHHhccCCCCcccccCc Q lcl|Aclame:pro 247 GLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMG-QRTVFV--SDVMLRTVPDESGMPPPQ 323 (517) Q Consensus 247 g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~-~~~i~v--~~~~l~~~~~~~~~~~~~ 323 (517) . .. +.||+.+.++ ....|+|.+.-+...|.....+-....+-|+.| ++.-++ |..+ .+........ T Consensus 169 ~-~e--IiHir~~~~d----g~~~G~Spi~~~~~~i~~~~aa~~~~~~~f~Ng~~p~gvl~~~~~l----s~e~~~~~k~ 237 (518) T protein:vir:78 169 D-DE--VVPIRFFNPD----GLERGLSLMESLKSTIFSEDSSRNATAAMWKNAGRPNLVLRHEKRL----SPEAQQRLRE 237 (518) T ss_pred C-Cc--EEEecCCCCC----cccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEecCCCC----CHHHHHHHHH Confidence 0 01 3456544332 223688988777776666555444445556654 443333 1111 0000000001 Q ss_pred cCCcccceeeeecC------CCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHHHHHHHH Q lcl|Aclame:pro 324 VFDPDVNVYKSIRM------GTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVSENDL 397 (517) Q Consensus 324 ~fd~~~~~y~~~~~------~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a~~~~ 397 (517) .|. ..|.+... =+++-.++.++......++.+..+...+.|+...|++|..+|+...+. .+.+...... T Consensus 238 ~~~---~~~~G~~nag~~~vL~~G~~~~~l~~~~~d~q~le~r~~~~~eIa~afgVPp~~lg~~~~st--~sn~e~~~~~ 312 (518) T protein:vir:78 238 QFD---RAHAGSSNTGKTMVVEEGMEPIPLQLTAVEMQFIEARQLNREEVCGVYDIAPPIVHILDRAT--FSNISAQMRA 312 (518) T ss_pred HHH---HHhcCcccCCceeEcCCCceEEeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccCCCCC--chhHHHHHHH Confidence 110 01111110 012223455555555667778777778899999999999998755432 1111111111 Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCCHHHHHHh Q lcl|Aclame:pro 398 TY-RTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTVEAIQR 476 (517) Q Consensus 398 ~~-~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~~~l~~ 476 (517) .+ .++.-....++.+|... ++... ...+.+.++.+.-+..|.++.++.+.+++.+|+|+.-++++. T Consensus 313 f~~~tL~P~~~~ie~eln~~------------L~~~~-~~~~~~~fd~~~Llr~D~~~r~~~~~~~~~~G~lT~NE~R~~ 379 (518) T protein:vir:78 313 FYRDTMAIPIARIQSAMDKY------------VGQYW-VRKNRMKFDIDDVIQPDWEAKSESTQKMVNSGVATPNEGREI 379 (518) T ss_pred HHHHHHHHHHHHHHHHHHHh------------hcccc-cCcceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHH Confidence 11 12222233333333221 11111 123446666667678899999999999999999999996653 Q ss_pred hCCCC---HHHHHHH-----HHHHHH--------hccccCCCCCc-------cccCCCCCCCCC Q lcl|Aclame:pro 477 IFKVP---KKTAEQW-----LEEIRK--------DQIELDPVTIS-------QRAQKRMFGDEE 517 (517) Q Consensus 477 ~~~~~---eeea~~e-----l~~i~~--------E~~~~~~~~~~-------~~~~~~~~G~ee 517 (517) .|+. +...++. +..+.. .++++.+.+.. +.+..+..|-+. T Consensus 380 -~gl~pie~~~gD~~~v~~n~~pl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (518) T protein:vir:78 380 -MGLPRSDDPKADELYANSALQPLGATPDGAVEGEEAPAPKRPASTPVASLDQSPPASVPGLSP 442 (518) T ss_pred -hCCCCCCCCCCceeeecccceecccccccccCCCCCCCCCCCCcccccccccCccccCCCCCc Confidence 3543 2223322 111110 00111111100 000000000000 No 195 >protein:vir:9408 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:167 # MgeName: phi 13 # Cross-refs: genbank:acc:NP_803386;genbank:gi:29028698;genbank:GeneID:1258164 Probab=96.80 E-value=0.00033 Score=39.65 Aligned_cols=403 Identities=12% Similarity=0.085 Sum_probs=157.7 Q ss_pred HHHHHHHHHHhhcccchhhhccccC-cC-CHHHHHH-------HHHHHHHhcCCCcccccccccCccccccccccChH-- Q lcl|Aclame:pro 8 KNFFKRGGYALSGQTLKSINDHEKI-NI-DPNELAR-------IERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLR-- 76 (517) Q Consensus 8 k~~~~~~~~~~~~~~~~~~~~~~~i-~~-~~~~~~~-------i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~-- 76 (517) -+|.---.+-+..++-|.-..|-.+ .+ ...+... ...|-....+- ....+..... ...+..+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~e~R~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~-~~al~~~~V 73 (441) T protein:vir:94 1 MHWYNTDCYFVDFKSRKQSRKELVVVGIFYKNEKRDLQYNEDDLQMMVQTLPGF------QGTKLRQYKD-IEAIRHSDI 73 (441) T ss_pred CccccCccccccccccccchhhhhccccccccccccccCCCcchHHHHHHhccc------Ccccccccch-hhhhccHHH Confidence 0000000000111111111111000 00 0000000 00000000000 0000000000 0011111 Q ss_pred ----HHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhh---HHHHHHHHHHHHHhhCCEEEEEEEe Q lcl|Aclame:pro 77 ----KLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNK---FIKNLSDYLEPTFALGGLTVRPYVD 149 (517) Q Consensus 77 ----~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~---f~~~~~~~~~~a~~~G~~~~k~~~d 149 (517) ..||+..|+| |..+.-++.. .....+...|+. .-|. -..-....+.+.+..|.+++.+..+ T Consensus 74 ~~cv~~Ia~~iA~l----p~~~~~~~~~------~~~~~~~~lL~~--~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~ 141 (441) T protein:vir:94 74 FTAVMMIASDLARM----PIRVTVNGQI------NYSDRIVNLLNT--RPNPMYNGYIFKLVVFVSALLTSHGYIEITRD 141 (441) T ss_pred HHHHHHHHHhhccC----ceeeecCccc------cccchHHHHHhc--ccCcCCCHHHHHHHHHHHHhhcCCeEEEEEEC Confidence 4566666654 3232211110 011112222211 1111 1122344556677789988888776 Q ss_pred -CCee-EEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccC Q lcl|Aclame:pro 150 -NGEI-EFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIG 227 (517) Q Consensus 150 -~g~~-~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG 227 (517) .|++ .+..++|+.+.+. .+.++.. +|+. +. .. ..+. .+. ..|. T Consensus 142 ~~G~~~~L~~i~~~~v~v~-~d~~g~~-----------------~~~~-~~--~~----~~~~-~~~-~~~~-------- 186 (441) T protein:vir:94 142 KTGEPMNLTFRKTSEIELK-SDARGRL-----------------YYFH-QR--ID----SNGN-NIE-RNVK-------- 186 (441) T ss_pred CCCcEEEEEEEcCceeEEE-ECCCccE-----------------EEEE-EE--ec----cCCc-eeE-EEEc-------- Confidence 3554 5788888888764 2332211 1110 00 00 0000 000 0010 Q ss_pred cccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHH-HHhc-cceeec Q lcl|Aclame:pro 228 KRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWE-IKMG-QRTVFV 305 (517) Q Consensus 228 ~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e-~~~~-~~~i~v 305 (517) +.+ ++||+.+. .+..+|+|.+.-+...|+. ......+... |+.| ++..++ T Consensus 187 ------------~~d----------vih~k~~~-----~dg~~G~spl~~~~~~i~~-~~~~~~~~~~~f~ng~~p~gil 238 (441) T protein:vir:94 187 ------------FED----------MLDIKFYS-----LDGINGLSLLDTLSRTIES-DNNGKDFLNNFLRNGTHAGGIL 238 (441) T ss_pred ------------ccc----------EEEeccCC-----CCCccccCHHHHHHHHHHH-HHHHHHHHHHHHhccCCCcEEE Confidence 001 24454321 1234699998888877764 4455555554 4544 444433 Q ss_pred --chHHhccCCCCcccccCccCCcccceeeeecC------CCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccc Q lcl|Aclame:pro 306 --SDVMLRTVPDESGMPPPQVFDPDVNVYKSIRM------GTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGT 377 (517) Q Consensus 306 --~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~~------~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~ 377 (517) |..+.. +.........|. ..|.+... =+++-.++.++....+.++.+..+...++|+...|++|.. T Consensus 239 ~~~~~~~~---~e~~e~~r~~~~---~~~~G~~nag~~~vl~~G~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~ 312 (441) T protein:vir:94 239 KMKGVLDN---KKARDRAREEFH---KSFSGTKQAGKVVVLDESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHK 312 (441) T ss_pred EcCCCCCC---HHHHHHHHHHHH---HHhcCccccCcceecCCCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHH Confidence 211100 000000001111 11111110 0222345555556666778888888888999999999999 Q ss_pred cccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHH Q lcl|Aclame:pro 378 FSFDGRSMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLR 457 (517) Q Consensus 378 ~~~~~~~~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~ 457 (517) +|.+..+. +.++.... ...++.-+...++.+|... ++.. .....+.++++.-...|..+.++ T Consensus 313 lg~~~~~~-s~~q~~~~---~~~tl~P~~~~ie~eln~k------------l~~~--~~~~~~~fd~~~llr~D~~~~~~ 374 (441) T protein:vir:94 313 FGIETANM-SITDANLD---YLSTLKPYITCVCAELNFK------------FNDE--YVNREFKFDTTEIRVVDEKTQAE 374 (441) T ss_pred cCCCCCCc-cHHHHHHH---HHHHHHHHHHHHHHHHhhh------------cccc--ccCceEEeechhhhccCHHHHHH Confidence 98654332 22222211 1123333333333333321 1111 12455777777767789999999 Q ss_pred HHHHHHhcCCCCHHHHHHhhCCCCHHH-HHHHHHHH-----HHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 458 FYGQAKTFGFIPTVEAIQRIFKVPKKT-AEQWLEEI-----RKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 458 ~~~~~~~~G~~S~~~~l~~~~~~~eee-a~~el~~i-----~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) ....++.+|+|+..++... .|+..-+ -++-+-.+ ..+....-+..-........-|+|| T Consensus 375 ~~~~~i~~G~~T~NE~R~~-~gl~Pi~ggd~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~kgGe~ 439 (441) T protein:vir:94 375 IDKINIDSGKMNIDEIRQR-DGLAPIPGGNGSIHRVDLNHVNIELVDEYQMNKSRATDKKLKGGEE 439 (441) T ss_pred HHHHHHhCCCcCHHHHHHH-hCCCCCCCCCcceEeecccccccccccccccccccccccccCCCCC Confidence 9999999999999996654 3553310 11101000 0111100000000001122234444 No 196 >protein:vir:79984 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1875 # MgeName: tp310-3 # Cross-refs: genbank:acc:YP_001430000;genbank:gi:156604055;genbank:GeneID:5525444 Probab=96.80 E-value=0.00033 Score=39.65 Aligned_cols=403 Identities=12% Similarity=0.085 Sum_probs=157.7 Q ss_pred HHHHHHHHHHhhcccchhhhccccC-cC-CHHHHHH-------HHHHHHHhcCCCcccccccccCccccccccccChH-- Q lcl|Aclame:pro 8 KNFFKRGGYALSGQTLKSINDHEKI-NI-DPNELAR-------IERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLR-- 76 (517) Q Consensus 8 k~~~~~~~~~~~~~~~~~~~~~~~i-~~-~~~~~~~-------i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~-- 76 (517) -+|.---.+-+..++-|.-..|-.+ .+ ...+... ...|-....+- ....+..... ...+..+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~e~R~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~-~~al~~~~V 73 (441) T protein:vir:79 1 MHWYNTDCYFVDFKSRKQSRKELVVVGIFYKNEKRDLQYNEDDLQMMVQTLPGF------QGTKLRQYKD-IEAIRHSDI 73 (441) T ss_pred CccccCccccccccccccchhhhhccccccccccccccCCCcchHHHHHHhccc------Ccccccccch-hhhhccHHH Confidence 0000000000111111111111000 00 0000000 00000000000 0000000000 0011111 Q ss_pred ----HHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhh---HHHHHHHHHHHHHhhCCEEEEEEEe Q lcl|Aclame:pro 77 ----KLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNK---FIKNLSDYLEPTFALGGLTVRPYVD 149 (517) Q Consensus 77 ----~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~---f~~~~~~~~~~a~~~G~~~~k~~~d 149 (517) ..||+..|+| |..+.-++.. .....+...|+. .-|. -..-....+.+.+..|.+++.+..+ T Consensus 74 ~~cv~~Ia~~iA~l----p~~~~~~~~~------~~~~~~~~lL~~--~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~ 141 (441) T protein:vir:79 74 FTAVMMIASDLARM----PIRVTVNGQI------NYSDRIVNLLNT--RPNPMYNGYIFKLVVFVSALLTSHGYIEITRD 141 (441) T ss_pred HHHHHHHHHhhccC----ceeeecCccc------cccchHHHHHhc--ccCcCCCHHHHHHHHHHHHhhcCCeEEEEEEC Confidence 4566666654 3232211110 011112222211 1111 1122344556677789988888776 Q ss_pred -CCee-EEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccC Q lcl|Aclame:pro 150 -NGEI-EFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIG 227 (517) Q Consensus 150 -~g~~-~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG 227 (517) .|++ .+..++|+.+.+. .+.++.. +|+. +. .. ..+. .+. ..|. T Consensus 142 ~~G~~~~L~~i~~~~v~v~-~d~~g~~-----------------~~~~-~~--~~----~~~~-~~~-~~~~-------- 186 (441) T protein:vir:79 142 KTGEPMNLTFRKTSEIELK-SDARGRL-----------------YYFH-QR--ID----SNGN-NIE-RNVK-------- 186 (441) T ss_pred CCCcEEEEEEEcCceeEEE-ECCCccE-----------------EEEE-EE--ec----cCCc-eeE-EEEc-------- Confidence 3554 5788888888764 2332211 1110 00 00 0000 000 0010 Q ss_pred cccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHH-HHhc-cceeec Q lcl|Aclame:pro 228 KRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWE-IKMG-QRTVFV 305 (517) Q Consensus 228 ~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e-~~~~-~~~i~v 305 (517) +.+ ++||+.+. .+..+|+|.+.-+...|+. ......+... |+.| ++..++ T Consensus 187 ------------~~d----------vih~k~~~-----~dg~~G~spl~~~~~~i~~-~~~~~~~~~~~f~ng~~p~gil 238 (441) T protein:vir:79 187 ------------FED----------MLDIKFYS-----LDGINGLSLLDTLSRTIES-DNNGKDFLNNFLRNGTHAGGIL 238 (441) T ss_pred ------------ccc----------EEEeccCC-----CCCccccCHHHHHHHHHHH-HHHHHHHHHHHHhccCCCcEEE Confidence 001 24454321 1234699998888877764 4455555554 4544 444433 Q ss_pred --chHHhccCCCCcccccCccCCcccceeeeecC------CCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccc Q lcl|Aclame:pro 306 --SDVMLRTVPDESGMPPPQVFDPDVNVYKSIRM------GTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGT 377 (517) Q Consensus 306 --~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~~------~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~ 377 (517) |..+.. +.........|. ..|.+... =+++-.++.++....+.++.+..+...++|+...|++|.. T Consensus 239 ~~~~~~~~---~e~~e~~r~~~~---~~~~G~~nag~~~vl~~G~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~ 312 (441) T protein:vir:79 239 KMKGVLDN---KKARDRAREEFH---KSFSGTKQAGKVVVLDESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHK 312 (441) T ss_pred EcCCCCCC---HHHHHHHHHHHH---HHhcCccccCcceecCCCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHH Confidence 211100 000000001111 11111110 0222345555556666778888888888999999999999 Q ss_pred cccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHH Q lcl|Aclame:pro 378 FSFDGRSMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLR 457 (517) Q Consensus 378 ~~~~~~~~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~ 457 (517) +|.+..+. +.++.... ...++.-+...++.+|... ++.. .....+.++++.-...|..+.++ T Consensus 313 lg~~~~~~-s~~q~~~~---~~~tl~P~~~~ie~eln~k------------l~~~--~~~~~~~fd~~~llr~D~~~~~~ 374 (441) T protein:vir:79 313 FGIETANM-SITDANLD---YLSTLKPYITCVCAELNFK------------FNDE--YVNREFKFDTTEIRVVDEKTQAE 374 (441) T ss_pred cCCCCCCc-cHHHHHHH---HHHHHHHHHHHHHHHHhhh------------cccc--ccCceEEeechhhhccCHHHHHH Confidence 98654332 22222211 1123333333333333321 1111 12455777777767789999999 Q ss_pred HHHHHHhcCCCCHHHHHHhhCCCCHHH-HHHHHHHH-----HHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 458 FYGQAKTFGFIPTVEAIQRIFKVPKKT-AEQWLEEI-----RKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 458 ~~~~~~~~G~~S~~~~l~~~~~~~eee-a~~el~~i-----~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) ....++.+|+|+..++... .|+..-+ -++-+-.+ ..+....-+..-........-|+|| T Consensus 375 ~~~~~i~~G~~T~NE~R~~-~gl~Pi~ggd~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~kgGe~ 439 (441) T protein:vir:79 375 IDKINIDSGKMNIDEIRQR-DGLAPIPGGNGSIHRVDLNHVNIELVDEYQMNKSRATDKKLKGGEE 439 (441) T ss_pred HHHHHHhCCCcCHHHHHHH-hCCCCCCCCCcceEeecccccccccccccccccccccccccCCCCC Confidence 9999999999999996654 3553310 11101000 0111100000000001122234444 No 197 >protein:vir:96988 Length: 516 # NCBI annotation: 29 # Family: family:all:481 # MgeID: mge:1644 # MgeName: K1-5 # Cross-refs: genbank:acc:YP_654130;genbank:gi:108862014;genbank:GeneID:5075937 Probab=96.79 E-value=0.00034 Score=39.62 Aligned_cols=439 Identities=10% Similarity=0.060 Sum_probs=173.0 Q ss_pred HHHHhhccc---chhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccChHHHHHHHHhhhhcCC Q lcl|Aclame:pro 14 GGYALSGQT---LKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLRKLSADVLSGLVFNE 90 (517) Q Consensus 14 ~~~~~~~~~---~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~~~i~~~~A~ll~~e 90 (517) |...+..++ -+.+....+ .+-.+-..-...|+.+|.=--|.+ ...++.....++.-=+.+...++.+|+-|.+- T Consensus 1 ~~~~~~~~~~~~~~~l~~r~~-~L~~~R~~~e~~w~e~a~~~lP~~--~~~~~~~~~~~~~~dstg~~a~~~LAa~l~~~ 77 (516) T protein:vir:96 1 MKQSIDLEYGGKRSKIPKLWE-KFSNKRSSFLDRAKHYSKLTLPYL--MNDKGDNETSQNGWQGVGAQATNHLANKLAQV 77 (516) T ss_pred CcchhhhhhhhhHHHHHHHHH-HHHHHhhHHHHHHHHHHHhhcccc--cCCCCCccccCCcccchHHHHHHHHHHHHHhh Confidence 111111110 011110000 000111122355666543222221 11122222222222234455555555544432 Q ss_pred c--c-----eeEecCcccc---c------ccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeCCeeE Q lcl|Aclame:pro 91 Q--C-----EVYVSDAKDE---E------KKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDNGEIE 154 (517) Q Consensus 91 ~--~-----~i~~~~~~~~---~------~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~g~~~ 154 (517) . | ++.+++.... + ..+...+...+.+...+..++|...+.++..+..++|.+.+ |.|... . T Consensus 78 ltpp~~~WF~L~~~~~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l--~~d~~~-~ 154 (516) T protein:vir:96 78 LFPAQRSFFRVDLTAQGEKVLNQRGLKKTELATIFAQVETRAMKELEQRQFRPAVVEAFKHLIVAGSCML--YKPSKG-A 154 (516) T ss_pred hcCCCCcccccccChhHHhhccccCchhHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCeEeE--EecCCC-C Confidence 1 1 1322221110 0 01112222344566678888999999999999999998765 455322 3 Q ss_pred EEEEcCCeEEEEEEcCCceEEEEEEEEEE----------EE-----------ecCCcEEEEEEEEEeecceeeccceEEE Q lcl|Aclame:pro 155 FSWALANAFYPLRSNSNGISEGVMKSVTT----------KV-----------IGNKTVYYTLLEFHEWEKTEEGESLYVI 213 (517) Q Consensus 155 i~~v~a~~~~P~~~~~~~~~~~a~~~~~~----------~~-----------~~~~~~~yt~lE~h~~~~~~~~~~~y~I 213 (517) +..+|-.+++ +..|..|....+|..... .. ..+.-.+|++++++- ++.+. T Consensus 155 ~~~~pl~~y~-v~~d~~G~v~~i~rr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~v~~~v~~~~-------~~~~~- 225 (516) T protein:vir:96 155 ISAIPMHHYV-VNRDTNGDLLDIILLQEKALRTFDPATRAVVEVGLKGKKCKEDDSVKLYTHAKYLG-------DGFWE- 225 (516) T ss_pred EEEEEcCeEE-EeeCCCCCeeeehhhhHhhHHHHHHhhhhhhhhhhhhhhcCCCCceEEEEeeeeeC-------CceeE- Confidence 5677777765 455655544444321110 00 011112344444321 12111 Q ss_pred EEEEeecCCccccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHH Q lcl|Aclame:pro 214 TNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFW 293 (517) Q Consensus 214 ~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~ 293 (517) +|..-+...+|.+ +. -++..-||+.+ -.+...++.||+|--..+.+-++.|+..--... T Consensus 226 ---~~~~~d~~~~~~e---s~-----------~~~~e~P~~~~----Rw~~~~ge~YGrgp~~~~L~D~k~L~~l~~~~l 284 (516) T protein:vir:96 226 ---LKQSADDIPVGKV---SK-----------IKSEKLPFIPL----TWKRSYGEDWGRPLAEDYSGDLFVIQFLSEAVA 284 (516) T ss_pred ---EEEEeCceeeccc---cc-----------cccccCCeeee----eeeecCCCCcccchHHHhhHHHHHHHHHHHHHH Confidence 2222111111110 00 01112223333 355566889999999999999999986555544 Q ss_pred HHH-HhccceeecchHHhccCCCCcccccCccCCcccceeeeecCCCCCCcceEEe--cccChHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 294 WEI-KMGQRTVFVSDVMLRTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVT--HDIRTEQYKEAINQALRTLEME 370 (517) Q Consensus 294 ~e~-~~~~~~i~v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~--~dir~e~~~~~l~~~l~~i~~~ 370 (517) .-. ...++...||++.+.+-.+ ........+. .+..+ .+..++ +......-...++.+.+.|... T Consensus 285 ~~~~~a~~~~~lv~p~g~~~~~~--------l~~~~~g~i~--~g~~~--~v~~~q~~~~~d~~~~~~~i~~~~~rI~~a 352 (516) T protein:vir:96 285 RGAALMADIKYLIRPGAQTDVDH--------FVNSGTGEVV--TGVEE--DIHIVQLGKYADLTPISAVLEVYTRRIGVV 352 (516) T ss_pred HHHHHhcCCccccCcccccchhh--------hccCCCceee--cCCcc--cceeeecCcccchhHHHHHHHHHHHHHHHH Confidence 443 4666776775543211110 0000111121 12112 233333 3223343444455444444332 Q ss_pred hCCCccccccCCCccchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCcc Q lcl|Aclame:pro 371 LKLSVGTFSFDGRSMKTATEIVSENDLTYRTRNDHVYEV-EQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVF 449 (517) Q Consensus 371 ~g~s~~~~~~~~~~~~TAtei~a~~~~~~~t~~~~~~~~-~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~ 449 (517) .=+. .+...+....|||||....+...+...-.-..+ ...|.-|+.-++..+ +.. ++...|.++.-.++ T Consensus 353 f~~~--~l~~r~~~rvTAtEV~~r~~E~~~~LGpv~~rl~~Ell~Pli~r~l~~~------~p~-lp~~~v~~~~vs~l- 422 (516) T protein:vir:96 353 FMME--TMTRRDAERVTAVEIQRDALEIEQNMGGVYSLFATTMQSPVAMWGLLEA------GES-FTSDLVDPVIITGI- 422 (516) T ss_pred Hhhh--hhccCCCccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc------CCC-CccccccceeechH- Confidence 2111 122223344799999999988888776532222 223344444433221 111 22222333322211 Q ss_pred CCHHHHH------HHHHHHHh--cC-------CCCHHHHHH---hhCCC------CHHHHHHHHHHHHHhcc-------- Q lcl|Aclame:pro 450 QDRSALL------RFYGQAKT--FG-------FIPTVEAIQ---RIFKV------PKKTAEQWLEEIRKDQI-------- 497 (517) Q Consensus 450 ~d~~~~~------~~~~~~~~--~G-------~~S~~~~l~---~~~~~------~eeea~~el~~i~~E~~-------- 497 (517) +..... .+..+.++ ++ .+....++. ...|+ ++||.+++.++..+-|+ T Consensus 423 -~~l~r~~~~~~i~~~~~~i~~~~~~~p~v~d~id~d~~~~~~a~~~Gvp~~~irs~eev~~~~~~~~~~q~~~~~a~~~ 501 (516) T protein:vir:96 423 -EALGRMAELDKLANFAQYMSLPLQWPEPVLAAVKWPDYMDWVRGQISAELPFLKSAEEMAQEQEAQMQAQQAQMLEEGV 501 (516) T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhcCChhHHhcCCHHHHHHHHHHHhCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHh Confidence 111111 11111110 11 122223332 33343 34544433322211111 Q ss_pred -ccCCCCCccccCCC Q lcl|Aclame:pro 498 -ELDPVTISQRAQKR 511 (517) Q Consensus 498 -~~~~~~~~~~~~~~ 511 (517) .+.+..-++...+. T Consensus 502 ~~~~~~~~~~~~~~~ 516 (516) T protein:vir:96 502 AKAVPGVIQQELKEA 516 (516) T ss_pred hhhhhHHhhcccccC Confidence 11111111111222 No 198 >protein:vir:101647 Length: 460 # NCBI annotation: phage portal protein # Family: family:all:26542 # MgeID: mge:1646 # MgeName: 11b # Cross-refs: genbank:acc:YP_112492;genbank:gi:53793592;uniprot:Q5ZGG1;genbank:GeneID:3101755 Probab=96.78 E-value=0.00034 Score=39.58 Aligned_cols=402 Identities=9% Similarity=-0.036 Sum_probs=155.8 Q ss_pred hHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccChH------ Q lcl|Aclame:pro 3 VIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLR------ 76 (517) Q Consensus 3 ~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~------ 76 (517) |...|.+++++.... . . .....|.+|.-....... ..+...... ..+..| T Consensus 1 ~~~~~~~~~~~~~~~----~-------------~---~~~~~~~~~~g~~~~~~~---~~~~~~~~~-~a~~~~~v~~~v 56 (460) T protein:vir:10 1 MANRIIRALRELTGL----D-------------N---KFNDAFIKYIGQTFTKYD---NNGKTYLEQ-GYNINPDVYSCI 56 (460) T ss_pred CchhHHHHHhhhhcc----C-------------C---CchHHHHHhhccccCCCc---cchhhhhHH-HHhcchHHHHHH Confidence 677777777653321 0 0 012345555432211110 011110000 011222 Q ss_pred HHHHHHHhhhhcCCcceeEecCcccccc--ccc--c------------------hhHHHHHHHHHHh----hhhHHHHHH Q lcl|Aclame:pro 77 KLSADVLSGLVFNEQCEVYVSDAKDEEK--KDN--S------------------FKTAHEFIQHVFQ----HNKFIKNLS 130 (517) Q Consensus 77 ~~i~~~~A~ll~~e~~~i~~~~~~~~~~--~~~--~------------------~~~~~~~l~~~l~----~n~f~~~~~ 130 (517) ..||+..|++ |..+.-.+.+.... ... . .......+..++. ......-.+ T Consensus 57 ~~ia~~iA~l----p~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~PN~~~t~~~f~~ 132 (460) T protein:vir:10 57 SQMAAKTVAV----PYTIKVVKDTKAYQQLNNLNISTKGLYSFTQSLQKNRLDTKAFSETEKAFPLESPNPTQTWADIYS 132 (460) T ss_pred HHHHHhhhhC----ceEEEeccCCccchhhhhhhhhhhhhHHHHHHhhcchhhhcccchhHHHHHHhCCCCCCCHHHHHH Confidence 4455555543 22221111100000 000 0 0000000111110 001223334 Q ss_pred HHHHHHHhhCCEEEEEEEeC-----Cee-EEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecce Q lcl|Aclame:pro 131 DYLEPTFALGGLTVRPYVDN-----GEI-EFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKT 204 (517) Q Consensus 131 ~~~~~a~~~G~~~~k~~~d~-----g~~-~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~ 204 (517) .++.+.+..|.+++.+..+. |.+ .+..++|+.+-+...+++... +| ++.. T Consensus 133 ~~~~~lll~Gnay~~i~r~~~~~~~G~~~~L~~l~~~~v~v~~~~~~~~~-----------------~~---~~~~---- 188 (460) T protein:vir:10 133 LYKTYMRLNGNCYFYLMSPDDGINAGVPSQMYVLPAHLIKIVLKDDINLL-----------------ST---DSPI---- 188 (460) T ss_pred HHHHHHhhcCCeEEEEEecCCCccCceeEEEEEEcCceEEEEEcCCCcee-----------------ee---eeee---- Confidence 55667778898887766532 343 366677877766432222111 00 0000 Q ss_pred eeccceEEEEEEEeecCCccccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCC-CCCcchhhhhHHHHH Q lcl|Aclame:pro 205 EEGESLYVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHS-PLGLGITDNSVSTLK 283 (517) Q Consensus 205 ~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~s-plG~S~~~~~~~lid 283 (517) ..|. |..+ |....+ + +. + ++|||.+.+++.-..+ .+|+|.+.-+...|. T Consensus 189 ----~~~~-----~~~~-----g~~~~~---~---~~-------e---vih~r~~~~~~~~~~~~~~G~sp~~~~~~~i~ 238 (460) T protein:vir:10 189 ----KSYM-----LIQG-----DQFIEF---N---ED-------E---VIHTKYANPNFDLQGSHLYGMSPIRAILRNIN 238 (460) T ss_pred ----eEEE-----EecC-----ceeEEe---c---cc-------c---eEEEecCCCCcccccCccccccHHHHHHHHHH Confidence 0011 1100 111110 0 00 1 3566655555433333 479999988877777 Q ss_pred HHHHHHHHHHHHHHhccceeecchHHhccCCCCccc---ccCccCCcccceeeeec------CCCCCCcceEEecccChH Q lcl|Aclame:pro 284 KINDTYDQFWWEIKMGQRTVFVSDVMLRTVPDESGM---PPPQVFDPDVNVYKSIR------MGTDEEFVKDVTHDIRTE 354 (517) Q Consensus 284 ~lD~~~s~~~~e~~~~~~~i~v~~~~l~~~~~~~~~---~~~~~fd~~~~~y~~~~------~~~~~~~v~~~~~dir~e 354 (517) .....-....+-|+.|...-.+ +.....-... .....|. ..|.+.+ .-+++..++.++...... T Consensus 239 ~~~~~~~~~~~~f~ng~~~~~i----~~~~~~l~~e~~~~~~~~~~---~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~ 311 (460) T protein:vir:10 239 SQNSTIDNNVKTMQNGGVFGFI----HGGSTGLTQPQADSLKQRLT---EMDKSPDRLSQIAGASGEIAFTKISLNTDEL 311 (460) T ss_pred HHHHHHHHHHHHHhcCCCccee----eecCCCCCHHHHHHHHHHHH---HHhcCccccCCceecCCCceEEEccCChhHH Confidence 6554444444445665322222 2211111000 0000010 0111110 002222344555554566 Q ss_pred HHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-C Q lcl|Aclame:pro 355 QYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVSENDLTY-RTRNDHVYEVEQFIKGLVISVLELAKTYKLFG-G 432 (517) Q Consensus 355 ~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a~~~~~~-~t~~~~~~~~~~al~~li~~il~~~~~~~~~~-~ 432 (517) +..+..+...++|+..-|++|..+|....+..+...+.......+ .++.-+...++.+|..- ++. . T Consensus 312 q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~sn~e~~~~~f~~~~l~P~~~~ie~~ln~k------------l~~~~ 379 (460) T protein:vir:10 312 KPFDYLKYDQKAICNALGWSDKLLNNNEGGGLNTGNLEEERKRVVTDNIQPDLVILKQAFDKK------------FIKRF 379 (460) T ss_pred HHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHh------------hcCcc Confidence 778888888889999999999999875443222111211111111 12333333333333321 111 1 Q ss_pred CCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCCHHHHHHhhCCCC---HHHHHHHH-----HHHHHhccccCCCCC Q lcl|Aclame:pro 433 EIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTVEAIQRIFKVP---KKTAEQWL-----EEIRKDQIELDPVTI 504 (517) Q Consensus 433 ~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~~~l~~~~~~~---eeea~~el-----~~i~~E~~~~~~~~~ 504 (517) .......|.++|++ +. ...+......+++.+|+|+.-+++... |+. ++..++-+ ..+.. ... T Consensus 380 ~~~~~~~i~~d~~~-l~-~l~~d~~~~~~~~~~g~~T~NE~R~~~-g~~pi~~~~gD~~~~~~n~~~~~~--~~~----- 449 (460) T protein:vir:10 380 KGYENAVIEWDISE-LP-EMQTDMVAMASWLNTIPVTPNEIRIAM-KYETLNQDGMDIVFMPSNKVRIDD--VSN----- 449 (460) T ss_pred cccCCceEEeecch-hh-hHHHHHHHHHHHHhCCCCCHHHHHHHh-CCCCCCCCCCCeeeecccccchhh--ccc----- Confidence 11223445555543 22 222333444567789999999866543 443 33232211 11111 000 Q ss_pred ccccCCCCCCCC Q lcl|Aclame:pro 505 SQRAQKRMFGDE 516 (517) Q Consensus 505 ~~~~~~~~~G~e 516 (517) +..+.+.++.. T Consensus 450 -~~~~~~~nq~~ 460 (460) T protein:vir:10 450 -NLIDSAFNQNQ 460 (460) T ss_pred -ccCCCcccCCC Confidence 00011111111 No 199 >protein:vir:8100 Length: 466 # NCBI annotation: gp4 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:152 # MgeName: Che9c # Cross-refs: genbank:acc:NP_817681;genbank:gi:29566112;genbank:GeneID:1259306 Probab=96.77 E-value=0.00035 Score=39.55 Aligned_cols=423 Identities=8% Similarity=-0.036 Sum_probs=147.6 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcC---CHHHHHHHHHHHHHhcCCCcccccccccCcccc-ccccccChH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINI---DPNELARIERNLRQYEGDYPQVEYINSQGKIQE-RDYMTLNLR 76 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~-~~~~~ln~~ 76 (517) ||||++++...+. ...+.......-.......- +.... --+...|..|....+... .+.... +....+..- T Consensus 1 M~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~--~g~~v~~~~a~~~~~v 75 (466) T protein:vir:81 1 MRLIDRLLSTRGA-APRMSIDDYAQMLNEFAFNGIGYGFGGG--VPRIQQTLAGPSTELAPD--TFVGLATQAYQANGPV 75 (466) T ss_pred CchhHHHhhccCc-ccccchhhhhhhhhhhhccccccccccc--cHHHHHhhccccccccCc--cccccchhhhhccHHH Confidence 9999999987752 11111111000000000000 00000 001112222221111110 111111 111222222 Q ss_pred HHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeC-Ce--- Q lcl|Aclame:pro 77 KLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDN-GE--- 152 (517) Q Consensus 77 ~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~-g~--- 152 (517) ...++..|+-+..=|..+.-.+... ............+.+--.......-.+.++.+.+..|.+++.+..++ +. T Consensus 76 ~~~i~~Ia~~ia~lp~~~~~~~~~~--~~~~~~~~~~~L~~~PN~~~t~~~f~~~l~~~lll~Gnay~~i~r~~~g~l~~ 153 (466) T protein:vir:81 76 FACMLVRQLVFSSVRFRWQRLRDGK--PSDTFGSRDLQILETPWKGGTTQDMLSRMIQDADLAGNSYWTIVDGEFVRMRP 153 (466) T ss_pred HHHHHHHHHhhccCceEEEEecCCc--eeeccccHHHHHhhCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEecCcccccc Confidence 3333334433333233332211100 00111111111221110011222333445566777788888776543 22 Q ss_pred ------eEEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCcccc Q lcl|Aclame:pro 153 ------IEFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEI 226 (517) Q Consensus 153 ------~~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~l 226 (517) ..+..++|+.+.+....++.. . ..| . |.......- T Consensus 154 ~~~g~~~~l~~l~~~~v~~~~~~~~~~-~---------------~~y---~--------------------~~~~~~~~~ 194 (466) T protein:vir:81 154 DWVDVVVEERMVRGGRGELGGGQLGWR-K---------------VGY---L--------------------YTEGGRQSG 194 (466) T ss_pred ccCcceeEEEEecCcceEEEEcCCCce-E---------------EEE---E--------------------EEecCcccc Confidence 223334444433321111000 0 000 0 000000000 Q ss_pred CcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHH-HHHhc-cceee Q lcl|Aclame:pro 227 GKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWW-EIKMG-QRTVF 304 (517) Q Consensus 227 G~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~-e~~~~-~~~i~ 304 (517) +..+. ++ +.+ +.|||.. .|.. +..+|+|.+.-+...|.... +..++.. -|+.| ++.-+ T Consensus 195 ~~~~~---~~---~~d----------viHir~~-~~~~--d~~~G~s~i~~~~~~i~~~~-a~~~~~~~~f~ng~~p~gi 254 (466) T protein:vir:81 195 NESVG---FL---AED----------VVHFAPI-PDPL--ASYRGMSWLTPILREIRADQ-AMSKHQAKFFDNGATVNLV 254 (466) T ss_pred cceee---ec---ccc----------EEEEcCC-CCcc--cccccccHHHHHHHHHHHHH-HHHHHHHHHHhcCCCcceE Confidence 00000 00 001 3355421 1111 23469999888887775543 3344444 45544 33333 Q ss_pred cchHHhccCCCCcc---cccCccCCcccceeeeec------CCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCc Q lcl|Aclame:pro 305 VSDVMLRTVPDESG---MPPPQVFDPDVNVYKSIR------MGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSV 375 (517) Q Consensus 305 v~~~~l~~~~~~~~---~~~~~~fd~~~~~y~~~~------~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~ 375 (517) + .....-.. ......|. ..|.+.. .-+++-.++.++......++.+..+...+.|+...|++| T Consensus 255 l-----~~~~~l~~e~~~~~~~~~~---~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp 326 (466) T protein:vir:81 255 I-----KHNPMADPAAVKKWADEVN---SKHAGVDNAWKNLNLYPGADADVVGSNLQEIDFKNVRGGGETRIAAAAGVPP 326 (466) T ss_pred E-----ecCCCCCHHHHHHHHHHHH---HHhcCccccccceEcCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCH Confidence 2 22111100 00000010 1121110 002333455566555667788888888899999999999 Q ss_pred cccccCCC-ccchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeC--CCccCC Q lcl|Aclame:pro 376 GTFSFDGR-SMKTATEIVSENDLT-YRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFD--DGVFQD 451 (517) Q Consensus 376 ~~~~~~~~-~~~TAtei~a~~~~~-~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~--d~i~~d 451 (517) ..+|...+ +..|...+....... ..++.-+...|+.+|... ++... ......++|+ +-+..| T Consensus 327 ~~lG~~~~~~~st~sn~eq~~~~f~~~tl~P~~~~ie~~l~~~------------L~~~~--~~~~~~~~f~~~~llr~d 392 (466) T protein:vir:81 327 VIVGLSEGLAAATYSNYGQARRRLADGTAHPLWQNLSGCIGHV------------MPDMG--PDVRLWYDADDVPFLRED 392 (466) T ss_pred HHcccccCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHhh------------cCCcc--cCcceEEEecchhhhccC Confidence 99987643 233322222222222 222333333333333321 22111 1223344554 333445 Q ss_pred HHHHHHH-------HHHHHhcCCCCHHHHHHhhCCCCHH----HHHHHHHHHHHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 452 RSALLRF-------YGQAKTFGFIPTVEAIQRIFKVPKK----TAEQWLEEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 452 ~~~~~~~-------~~~~~~~G~~S~~~~l~~~~~~~ee----ea~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) ..+..+. ...++++|+ .+.+.+....+-+.. ....-++.+..- ..++ .+.+.+...|+|| T Consensus 393 ~~~r~~~~~~~~~~~~~~~~~g~-t~nE~r~~~~~gd~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~Gg~~ 463 (466) T protein:vir:81 393 EKDAADIQKVRAETINTLITAGY-EPESVVAAVNSGDLRLLKHTGLTSVQLLPPG--VSAS---ASSDTPTSGGADD 463 (466) T ss_pred HHHHHHHHHHHHHHHHHHHHcCC-ChhhccccccCCccccccCCCcchhhhcccc--cccc---cCCCCcccCCCCc Confidence 4443332 334455564 444443322111000 000000000000 0111 1111122334455 No 200 >protein:vir:106999 Length: 564 # NCBI annotation: portal vertex protein gp20 # Family: family:all:1036 # MgeID: mge:1459 # MgeName: S-PM2 # Cross-refs: genbank:acc:YP_195138;genbank:gi:58532915;interpro:IPR010823;uniprot:Q5GQN4;genbank:GeneID:3260496 Probab=96.72 E-value=0.00038 Score=39.32 Aligned_cols=450 Identities=13% Similarity=0.125 Sum_probs=189.3 Q ss_pred HHHHhhcccchhhhccccC-cCCHHHHHHHHHHHHHhcCCCcccc----cccccCcccccccccc-ChH---HHHHHHHh Q lcl|Aclame:pro 14 GGYALSGQTLKSINDHEKI-NIDPNELARIERNLRQYEGDYPQVE----YINSQGKIQERDYMTL-NLR---KLSADVLS 84 (517) Q Consensus 14 ~~~~~~~~~~~~~~~~~~i-~~~~~~~~~i~~~~~~Y~g~~~~~~----~~~~~~~~~~~~~~~l-n~~---~~i~~~~A 84 (517) |..+++ ..++.....+.. -++|.+.+-...-..=|.|..-... +++.. -.-+...++ .-| ..|-.-.- T Consensus 1 m~~lfg-f~i~~~~~~~~~S~vpp~~~~~~~~i~~g~~g~~v~~~g~~~~~n~~--eLI~~YR~ma~~pEVd~Av~eIVn 77 (564) T protein:vir:10 1 MSQLFG-FLINEKEGQKGQSPVPPNDEASVSTVAGGYFGTYVDTSGGQNSRNEY--ELIRRYRDMSLHPEVDSAIDEIVN 77 (564) T ss_pred Ccchhc-ceeeeeccCCCCCcccCCcCCChhhhhccccceeeecccccchhhHH--HHHHHHHHHhhccchhhHHHHhhc Confidence 222222 233222111111 1122222211111001111111100 00000 000011111 000 11111111 Q ss_pred hhhcCC----cceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeCCe-----eEE Q lcl|Aclame:pro 85 GLVFNE----QCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDNGE-----IEF 155 (517) Q Consensus 85 ~ll~~e----~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~g~-----~~i 155 (517) +.++.+ ++++.+++.... ....++-.+..+.++.--+|.++..+.+..+.+.|..+||..+|... ..+ T Consensus 78 eaIv~d~~~~pV~vdL~~~~~s---~siK~kI~eEF~~Il~ll~F~~~~~e~fR~WYVDgRi~fHkiid~~~pk~GI~eL 154 (564) T protein:vir:10 78 EFVVNDGDDKPVEVDLQNLEIG---SGVKKKIRDEFNRILRMMNFNVNAHEIIRNWYVDGRSHYHKVIDLDNPKKGILEL 154 (564) T ss_pred ceeEecCCCceEEEEecccCcc---hHHHHHHHHHHHHHHHHhccchhhhHHHhhhhhcceEEEEEEeeCCChhhhhhhh Confidence 122222 344444433321 22233455667777777789999999999999999999999998433 347 Q ss_pred EEEcCCeEEEEEE---cCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCcccc------ Q lcl|Aclame:pro 156 SWALANAFYPLRS---NSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEI------ 226 (517) Q Consensus 156 ~~v~a~~~~P~~~---~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~l------ 226 (517) ..++|-++=+++. +.+-....+...... .-.|..-.|++.+.. +-|........ T Consensus 155 r~lDPr~i~~vr~i~~~~~~~~~~v~k~~~~-----~~~y~~~~Eyy~Ynp------------~~~~g~~~~~~~~~~~~ 217 (564) T protein:vir:10 155 RYIDSLKIRKVRQKLKDVDPNRKEIEKGTAL-----QYDYGDFIEYYIYNP------------KGFAGNIPMVTGSMDWS 217 (564) T ss_pred hhhcccceeeeeeeccccccccceeeeeeee-----eccccccccceeecc------------ccccCcccccccccccc Confidence 7888887766542 111011111110000 000001111111110 00100000000 Q ss_pred ---CcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHH---Hhcc Q lcl|Aclame:pro 227 ---GKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEI---KMGQ 300 (517) Q Consensus 227 ---G~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~---~~~~ 300 (517) |..+|-+. ++|..-- -.+.....-+|-+..|+-.+-.| +..-..+-.+ |.-. T Consensus 218 ~~~~ikI~~da------------------I~y~hSG---L~d~~~~~i~gyLhkAIKp~NQL-kmlEDAlVIYRitRAPe 275 (564) T protein:vir:10 218 NQEGIKIASDA------------------IAQSTSG---LMDLNKKMTLSFLHKAIKSLNQL-RMIEDSLVIYRLSRAPE 275 (564) T ss_pred cccceeechhh------------------cceeccc---ceeCCCCceeccchhhhHhHHhh-HHHHhhHHHHhhhcccc Confidence 11111111 1111000 00111222245555554444444 2333333333 4555 Q ss_pred ceeec-c---------hHHhcc---------CCCCcccccCccCCcccceeeeecCC------CCCCc--ceEEecccCh Q lcl|Aclame:pro 301 RTVFV-S---------DVMLRT---------VPDESGMPPPQVFDPDVNVYKSIRMG------TDEEF--VKDVTHDIRT 353 (517) Q Consensus 301 ~~i~v-~---------~~~l~~---------~~~~~~~~~~~~fd~~~~~y~~~~~~------~~~~~--v~~~~~dir~ 353 (517) +|||- + +.+|+. .-+...+. -.+++.++++.-+ +++.+ |+++..- .- T Consensus 276 RRvFYIDVGnLPk~KAeqYlr~iM~k~KNklVYDa~TGe-----vrddrk~msMlEDyWLPRReGgrgTEItTLpGg-qn 349 (564) T protein:vir:10 276 RRIFYIDVGNLPKVKAEQYLRDVMSRYRNKLVYDGQTGE-----IRDDKKHMSMLEDFWLPRREGGRGTEITTLPGG-QN 349 (564) T ss_pred ceEEEEecCCCCchhHHHHHHHHHHhcCceEEEeccCce-----ecccchhhhhHhhhcccccCCCcccceeecccc-CC Confidence 67763 1 111111 00111111 1244445543211 33333 4444322 22 Q ss_pred HHHHHHHHHHHHHHHHHhCCCccccccCCCc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC Q lcl|Aclame:pro 354 EQYKEAINQALRTLEMELKLSVGTFSFDGRS--MKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFG 431 (517) Q Consensus 354 e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~--~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~ 431 (517) -.-.+-++-+.+.+....+.+.+-+..++++ ..-++||.-..-....-+.+++..|..-+.++++.=|-|- +.+. T Consensus 350 Lgem~DV~YF~kKLY~aLnVP~SRl~~e~~~f~~Gr~~EItRDEiKF~KFI~RLR~rFs~lF~~~Lk~qLiLK---giit 426 (564) T protein:vir:10 350 LGELKDVEYFKKKLYNSLNLPPSRLTDDNKAFNLGKSTEILRDELKFTKFIGRLRKRFAQLFHDILKTQLILK---GIIT 426 (564) T ss_pred cchHHHHHHHHHHHHHHhCCCcccccCCCceeecccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc---cCCC Confidence 2233445556677777778877777665432 2335677666655556777788888888888877765432 2222 Q ss_pred CCCCCc--cceEEEeCCCccCCHHHHHHHHHHHH---------hcCCCCHHHHHHhhCCCCHHHHHHHHHHHHHhcccc- Q lcl|Aclame:pro 432 GEIPSA--EHIGVDFDDGVFQDRSALLRFYGQAK---------TFGFIPTVEAIQRIFKVPKKTAEQWLEEIRKDQIEL- 499 (517) Q Consensus 432 ~~~~~~--~~v~i~f~d~i~~d~~~~~~~~~~~~---------~~G~~S~~~~l~~~~~~~eeea~~el~~i~~E~~~~- 499 (517) ...+.. ..|.++|...---.+..+++.+.+-. -+-..|.+...++...+||+|.+++.+.|++|..+. T Consensus 427 ~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~S~dyi~k~ILr~tDeei~~~~kqI~~E~k~~~ 506 (564) T protein:vir:10 427 PEDWDDMEEHIQYDFLFDNHFNELKEQEMQLQRVNLATQMDPFVGKYFSTEYIRRKILMQTENEFKEIDKQMKSDIESGL 506 (564) T ss_pred HHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHhccCHHHHHHHHHHHHHHhhcCC Confidence 222322 44777776554444444444333211 112468888777888999999999999999887542 Q ss_pred --CCCCCcc------------ccCCCCCCC------CC Q lcl|Aclame:pro 500 --DPVTISQ------------RAQKRMFGD------EE 517 (517) Q Consensus 500 --~~~~~~~------------~~~~~~~G~------ee 517 (517) +|...+. +.+.+..|+ +| T Consensus 507 ~~~P~e~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 544 (564) T protein:vir:10 507 AIDPIQVNMLDDMEKQNQAFAPELQAAQDDLAAEREIK 544 (564) T ss_pred CCCchhhhcCCCccCCCCcCCcchhhhccccccccChh Confidence 2210000 000011010 00 No 201 >protein:vir:80134 Length: 403 # NCBI annotation: Phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1877 # MgeName: bacteriophage bv1 # Cross-refs: genbank:acc:YP_001425602;genbank:gi:155042935;genbank:GeneID:5469563 Probab=96.70 E-value=0.0004 Score=39.19 Aligned_cols=372 Identities=12% Similarity=0.082 Sum_probs=139.6 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccC-----h Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLN-----L 75 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln-----~ 75 (517) ||||. ||++-.. ..+. ++ +. | +..+..... ....+. ...+.+ - T Consensus 1 Mg~~~----~f~~k~~---~~~~-----------~~-----~~-~--~~~~~~~~~--~~~~~~----~~~~~~~~V~~~ 48 (403) T protein:vir:80 1 MGLFN----FFRRKTR---SEPT-----------NA-----IS-W--FLTQEAYDT--LAIPGY----TRLSDNPEVRMA 48 (403) T ss_pred Ccccc----ccccccc---cccc-----------ch-----hh-h--hcccccccc--cccchh----hhhhhhHHHHHH Confidence 99994 4543110 0000 00 00 0 001110000 000000 001000 0 Q ss_pred HHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhH--HHHHH-HHHHHHHhh--CCEEEEEEEeC Q lcl|Aclame:pro 76 RKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKF--IKNLS-DYLEPTFAL--GGLTVRPYVDN 150 (517) Q Consensus 76 ~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f--~~~~~-~~~~~a~~~--G~~~~k~~~d~ 150 (517) =..||+..|++ +..+.-....... .....+...|.. .-|.. ...+. .++.+++-. |.+++.+..|. T Consensus 49 I~~ia~~iA~~----p~~~~~~~~~g~~---~~~~~~~~lL~~--~PN~~~t~~~f~~~~v~~~ll~~~Gna~i~~~~~~ 119 (403) T protein:vir:80 49 VHKIAELISSM----TIHLMQNTDNGDI---RIKNELSRKIDI--NPYSLMTRKAWMYNIVYTMLLDGEGNSVVFPKYTT 119 (403) T ss_pred HHHHHHhhhhC----ceEEEEecCCcee---ecCChHHHHHhc--cCCcCCCHHHHHHHHHHHHhhcCCccEEEEEEEcC Confidence 14555555554 3332111111000 001112222221 01110 11222 234444443 44666666664 Q ss_pred -Cee-EEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCc Q lcl|Aclame:pro 151 -GEI-EFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGK 228 (517) Q Consensus 151 -g~~-~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~ 228 (517) |++ .+..++|+.+-++..++ + |.|. |. |. T Consensus 120 ~g~~~~L~~l~p~~v~~~~~~~-g--------------------------------------~~~~---y~-------~~ 150 (403) T protein:vir:80 120 SGLIDELIPLAPSKVSFVDTDT-G--------------------------------------YQIW---YQ-------GK 150 (403) T ss_pred CCcEEEEEEEcCCeeEEEEcCC-c--------------------------------------eEEE---Ee-------ec Confidence 443 45566666654431111 1 0110 11 00 Q ss_pred ccccccccCCCCcceEEcCCCcceEEEecC-CccccccCCCC-CCcchhhhhHHHHHHHHHHHHHHH-HHHHhc-cceee Q lcl|Aclame:pro 229 RIPLEELYEGMQEKTYIQGLSRPLFNYLKP-SGFNNINPHSP-LGLGITDNSVSTLKKINDTYDQFW-WEIKMG-QRTVF 304 (517) Q Consensus 229 ~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~-~~~N~~~~~sp-lG~S~~~~~~~lid~lD~~~s~~~-~e~~~~-~~~i~ 304 (517) ..+- .+ +.||+. +.+ .++ .|+|...-+...+..... ..++. .-++.| ++..+ T Consensus 151 ~~~~--------~e----------iih~~~~~~~-----~~~~~G~s~~~~~~~~i~~~~~-~~~~~~~~~~ng~~p~~i 206 (403) T protein:vir:80 151 AYNY--------DE----------VLHFIVNPDP-----EKPYMGRGYRVVLKDIVNNLKQ-ATTTKKSFMSGKYMPSLI 206 (403) T ss_pred ccch--------hh----------EEEEeccCCC-----cCccccccHHHHHHHHHHHHHH-HHHHHHHHHhccCCcceE Confidence 0110 01 233431 111 222 488877666666665543 33333 334544 44433 Q ss_pred c--chHHhccCCCCcccccCccCCcccceeeee-c------CCCCCCcceEEec-ccChHHHHHHHHHHHHHHHHHhCCC Q lcl|Aclame:pro 305 V--SDVMLRTVPDESGMPPPQVFDPDVNVYKSI-R------MGTDEEFVKDVTH-DIRTEQYKEAINQALRTLEMELKLS 374 (517) Q Consensus 305 v--~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~-~------~~~~~~~v~~~~~-dir~e~~~~~l~~~l~~i~~~~g~s 374 (517) + |..+- +.........+ .+.|... + .+.+....+.+++ +....+..+..+....+|+...|++ T Consensus 207 l~~~~~~~----~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~d~q~~e~~~~~~~~Ia~~fgVP 279 (403) T protein:vir:80 207 VKVDAATA----ELSSEEGRNAV---FKKYLEASEAGQPWIIPAELLDVEQVKPLSLKDLAIHETVELDKRTVAGIFGVP 279 (403) T ss_pred EEeCCCCC----hHHHHHHHHHH---HHHHhhhhhcCCeeeecccccccceeccCCHHHHHHHHHHHHhHHHHHHHhCCC Confidence 3 22110 00000000000 0011110 0 1111112333443 4445566677777778899999999 Q ss_pred ccccccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHH Q lcl|Aclame:pro 375 VGTFSFDGRSMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSA 454 (517) Q Consensus 375 ~~~~~~~~~~~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~ 454 (517) |..+|...... ++.. ..++.+|.-++..|....+. .++. ..++.+.++.+.-+..|..+ T Consensus 280 p~~lg~~~~~~--~~~~---------------~f~~~~l~P~~~~ie~~l~~-kll~---~~~~~~~f~~~~ll~~d~~~ 338 (403) T protein:vir:80 280 AFLLGVGKYDK--DEYN---------------NFINSTILPIAKGIEQELTR-KLLI---SPDLYFKFNPRSLYAYDLKE 338 (403) T ss_pred HHHcCCCCccH--HHHH---------------HHHHHHHHHHHHHHHHHHHH-hccC---CCCcEEEeechhhhccCHHH Confidence 99987432211 1111 12233344444433322211 1221 22344555555556678889 Q ss_pred HHHHHHHHHhcCCCCHHHHHHhhCCCCHHH-HHHHHHHHHHhccccCCCCCcc--ccCC--CCCCCCC Q lcl|Aclame:pro 455 LLRFYGQAKTFGFIPTVEAIQRIFKVPKKT-AEQWLEEIRKDQIELDPVTISQ--RAQK--RMFGDEE 517 (517) Q Consensus 455 ~~~~~~~~~~~G~~S~~~~l~~~~~~~eee-a~~el~~i~~E~~~~~~~~~~~--~~~~--~~~G~ee 517 (517) .++...+++.+|+|+.-++++ ..|+...+ .++.+... --...+..+..+ ..++ +.+|.-| T Consensus 339 ~~~~~~~~~~~Gi~t~NE~R~-~~gl~p~~ggd~~~~~~--n~~pl~~~~~~~~~k~ge~~~~~~~~~ 403 (403) T protein:vir:80 339 LAEVGSNMYVRGLMEGNEVRD-WLGLSPKEGLSELVILE--NYIPLDKIGDQNKLKGGEKGGADGQTD 403 (403) T ss_pred HHHHHHHHHhCCCcCHHHHHH-HhCCCCCCCCCeEeecc--cccchhhccchhhccCCCCCCCCCCCC Confidence 999999999999999999765 44654321 21111100 000000000001 1111 1112222 No 202 >protein:vir:7017 Length: 515 # NCBI annotation: head portal protein # Family: family:all:481 # MgeID: mge:141 # MgeName: SP6 # Cross-refs: genbank:acc:NP_853590;genbank:gi:31711672;genbank:GeneID:1481798 Probab=96.68 E-value=0.00042 Score=39.12 Aligned_cols=439 Identities=11% Similarity=0.061 Sum_probs=171.2 Q ss_pred HHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccChHHHHHHHHhhhhcCC Q lcl|Aclame:pro 11 FKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLRKLSADVLSGLVFNE 90 (517) Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~~~i~~~~A~ll~~e 90 (517) ++..-...+. ..+++..+.+ .+..+-..-...|+.++.=--|-+ ...++.....++.-=+.+...++.+|+-|.+- T Consensus 1 ~~~~~~~~~~-~~~~l~~r~~-~Lk~~R~~~e~~w~e~~~~tlP~~--~~~~~~~~~~~~~~dstg~~a~~~LAa~l~~~ 76 (515) T protein:vir:70 1 MQDTILEYGG-QRSKIPKLWE-KFSKKRSPYLDRAKHFAKLTLPYL--MNNKGDNETSQNGWQGVGAQATNHLANKLAQV 76 (515) T ss_pred CcchhhhhcC-CHHHHHHHHH-HHHHhhhHHHHHHHHHHHHhcccc--cCCCCCcccccccccchHHHHHHHHHHHHHHh Confidence 1110011111 1111111000 000011112335555543332321 11122222222222234445555555444332 Q ss_pred c--c-----eeEecCccccccc--ccchhHHH-------HHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeCCeeE Q lcl|Aclame:pro 91 Q--C-----EVYVSDAKDEEKK--DNSFKTAH-------EFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDNGEIE 154 (517) Q Consensus 91 ~--~-----~i~~~~~~~~~~~--~~~~~~~~-------~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~g~~~ 154 (517) . | ++.+++....... .......+ +.+-..+..++|...+.++..+..++|.+.+ |.|... . T Consensus 77 ltpp~~~WF~l~~~d~~~~~l~~~~~~~~~v~~~l~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l--~~d~~~-~ 153 (515) T protein:vir:70 77 LFPAQRSFFRVDLTAKGEKVLDDRGLKKTQLATIFARVETTAMKALEQRQFRPAIVEVFKHLIVAGNCLL--YKPSKG-A 153 (515) T ss_pred hcCCCCcccccccChhhhhccccchhHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhHCeEEE--EEeCCC-C Confidence 1 1 1322222111000 11111222 3444558888999999999999999998765 455322 2 Q ss_pred EEEEcCCeEEEEEEcCCceEEEEEEEEEEEE---------------------ecCCcEEEEEEEEEeecceeeccceEEE Q lcl|Aclame:pro 155 FSWALANAFYPLRSNSNGISEGVMKSVTTKV---------------------IGNKTVYYTLLEFHEWEKTEEGESLYVI 213 (517) Q Consensus 155 i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~---------------------~~~~~~~yt~lE~h~~~~~~~~~~~y~I 213 (517) +.++|-.+++ +..|..+....+|....... .++.-.+|+++++.. ++.+. T Consensus 154 ~~~~pl~~y~-v~~d~~G~v~~i~rr~~~t~~~l~~~f~~~~~~~~~~~~~~~~~~v~i~~~v~~~~-------~~~~~- 224 (515) T protein:vir:70 154 MSAVPMHHYV-VNRDTNGDLMDVILLQEKALRTFDPATRMAIEVGMKGKKCKEDDNVKLYTHAQYAG-------EGFWK- 224 (515) T ss_pred eEEEEcCeEE-EeeCCCcCeeEEEeeeeccHHHHHHhhhhhhhhhhhhhhcCCCCceEEEEEEEecC-------CCceE- Confidence 5667777765 45666665555543221100 000112333333221 11121 Q ss_pred EEEEeecCCccccCcccccccccCCCCcceEEcC--CCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHH Q lcl|Aclame:pro 214 TNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQG--LSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQ 291 (517) Q Consensus 214 ~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g--~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~ 291 (517) +|..-+...+|. + .+ +...||..+ -.+..+++.||+|--..+.+-++.|+..--. T Consensus 225 ---~~~e~d~~~~~~-----e-----------s~y~~~e~P~~~~----Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~ 281 (515) T protein:vir:70 225 ---INQSADDIPVGK-----E-----------SRIKSEKLPFIPL----TWKRSYGEDWGRPLAEDYSGDLFVIQFLSEA 281 (515) T ss_pred ---EEEecCceeecc-----c-----------cccccccCCceee----eeeecCCCCcccchHHHhhHHHHHHHHHHHH Confidence 121111111110 0 11 111223322 3555668899999999999999999866655 Q ss_pred HHHHH-HhccceeecchHHhccCCCCcccccCccCCcccceeeeecCCCCCCcceEEe--cccChHHHHHHHHHHHHHHH Q lcl|Aclame:pro 292 FWWEI-KMGQRTVFVSDVMLRTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVT--HDIRTEQYKEAINQALRTLE 368 (517) Q Consensus 292 ~~~e~-~~~~~~i~v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~--~dir~e~~~~~l~~~l~~i~ 368 (517) ...-. ...++...||++...+..+- -......+. .+..+ .+..++ +......-...++.+.+.|. T Consensus 282 ~l~~~~~a~~p~~lv~~~g~~~~~~l--------~~~~~g~iv--~g~~~--~v~~~~~~~~~d~~~~~~~i~~~~~rI~ 349 (515) T protein:vir:70 282 MARGAALMADIKYLIRPGSQTDVDHF--------VNSGTGEVI--TGVAE--DIHIVQLGKYADLTPISAVLEVYTRRIG 349 (515) T ss_pred HHHHHHHhcCCCeeeCcccccchhhc--------cccCCceee--cCCcc--cceeeecCcccchhHHHHHHHHHHHHHH Confidence 55544 57777777765443211100 000101111 12222 233333 32233444444555444443 Q ss_pred HHhCCCccccccCCCccchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCC Q lcl|Aclame:pro 369 MELKLSVGTFSFDGRSMKTATEIVSENDLTYRTRNDHVYEVE-QFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDG 447 (517) Q Consensus 369 ~~~g~s~~~~~~~~~~~~TAtei~a~~~~~~~t~~~~~~~~~-~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~ 447 (517) ...=+. ++.--.+...|||||....+...+...-.-..+. ..|.-|+..++ + ..... ++..-+.++.-.+ T Consensus 350 ~af~~~--~l~~rd~~rvTAtEV~~r~~E~~~~LGpv~srL~~Ell~Pli~r~~---~--~~~p~--~P~~~v~~~~vs~ 420 (515) T protein:vir:70 350 VIFMME--TMTRRDAERVTAVEIQRDALEIEQNMGGVYSLFAMTMQTPIAMWGL---Q--EAGDS--FTSELVDPVIVTG 420 (515) T ss_pred HHHhhh--hhhccCCccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH---H--hhCCC--CChhhcccceehh Confidence 322111 1211122346999999999888877654322222 22333333221 1 12111 2222233332121 Q ss_pred ccCCHHHH---HH---HHHHHHh--cC-------CCCHHHHHH---hhCCC------CHHHHHHHHHHHHHh-ccc---- Q lcl|Aclame:pro 448 VFQDRSAL---LR---FYGQAKT--FG-------FIPTVEAIQ---RIFKV------PKKTAEQWLEEIRKD-QIE---- 498 (517) Q Consensus 448 i~~d~~~~---~~---~~~~~~~--~G-------~~S~~~~l~---~~~~~------~eeea~~el~~i~~E-~~~---- 498 (517) + ..... ++ ...+.++ ++ .+....++. ...|. |+||++++.++.++. +++ T Consensus 421 l--~~L~r~q~~~~i~~~~q~i~~~~~~~p~~~~~id~d~~~~~~a~~~g~p~~~~rs~eev~~~r~q~~~~~~~~~~~~ 498 (515) T protein:vir:70 421 I--EALGRMAELDKLANFAQYMSLPQTWPEPAQRAIRWGDYMDWVRGQISAELPFLKSEEEMQQEMAQQAQAQQEAMLNE 498 (515) T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHhccChhHHhhCCHHHHHHHHHHHhCCCccccCCHHHHHHHHHHHHHHHHHHHHHH Confidence 1 11111 11 1111111 11 122222222 22232 566665554432221 111 Q ss_pred ----cCCCCCccccCCC Q lcl|Aclame:pro 499 ----LDPVTISQRAQKR 511 (517) Q Consensus 499 ----~~~~~~~~~~~~~ 511 (517) +.+.........+ T Consensus 499 ~~~~a~~~~~~~~~~~~ 515 (515) T protein:vir:70 499 GVAKAVPGVIQQEMKEG 515 (515) T ss_pred hhhhhcccchhhhhccC Confidence 1111111111111 No 203 >protein:vir:105064 Length: 421 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1465 # MgeName: phiKO2 # Cross-refs: genbank:acc:YP_006584;genbank:gi:46402090;genbank:GeneID:2777930 Probab=96.67 E-value=0.00042 Score=39.09 Aligned_cols=394 Identities=11% Similarity=0.089 Sum_probs=161.2 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccc-cccccC----h Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQER-DYMTLN----L 75 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~-~~~~ln----~ 75 (517) |.++ ++|++ .+-.++.. .-|..|..+-..... ..|..... ..+... - T Consensus 1 m~~~----~~~~~----------------~~~~~s~~-----~~w~~~~~~~~~~~~---~~g~~vt~~~al~~~~v~~~ 52 (421) T protein:vir:10 1 MFIP----QMFEG----------------KKRSVSGG-----GFWEAMLGGVRSSHS---KAGVMITPETALALSAVRAC 52 (421) T ss_pred CCCc----chhcc----------------cccccCcc-----hhhHHHhhhhccCcc---cCCceechHHhhccHHHHHH Confidence 3322 22211 11111211 124444433221110 00111100 011111 1 Q ss_pred HHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHh-hhhHHHHHHHHHHHHHhhCCEEEEEEEe-CCee Q lcl|Aclame:pro 76 RKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQ-HNKFIKNLSDYLEPTFALGGLTVRPYVD-NGEI 153 (517) Q Consensus 76 ~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~-~n~f~~~~~~~~~~a~~~G~~~~k~~~d-~g~~ 153 (517) -..||+..|.+ +..+.-.+.+.. ........+...|+.--. ......-.+..+.+.+-.|.+++.+..+ +|.+ T Consensus 53 i~~Ia~~iA~l----p~~~~~~~~~g~-~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~ 127 (421) T protein:vir:10 53 VTLLAESVAQL----PVELYRRDKNGG-RQRATDHPIYDLIHSQPNKKDTSFEYFEQQQGLLGLEGNCYSIIDRDGKGYP 127 (421) T ss_pred HHHHHHhhccC----ceEEEEEcCCCc-eeecccchHHHHHhhcccCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcE Confidence 15666666654 222211111100 000111122222221000 0012223344556777788888777766 3554 Q ss_pred -EEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCccccc Q lcl|Aclame:pro 154 -EFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPL 232 (517) Q Consensus 154 -~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l 232 (517) .+..++|+.+.|+. +.++ ..+|+ + +. .|..+|. T Consensus 128 ~~L~~l~~~~v~v~~-~~~g-----------------~~~y~------------------~----~~------~g~~~~~ 161 (421) T protein:vir:10 128 KELIPINPKKVIVLK-GPDG-----------------MPYYE------------------I----PE------IGETLPM 161 (421) T ss_pred EEEEEecCceEEEEE-CCCc-----------------eEEEE------------------E----cC------CCcEEch Confidence 45667777766532 1111 11111 0 00 0111111 Q ss_pred ccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHH-HHHh-ccceeec--chH Q lcl|Aclame:pro 233 EELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWW-EIKM-GQRTVFV--SDV 308 (517) Q Consensus 233 ~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~-e~~~-~~~~i~v--~~~ 308 (517) . -+.|++.+.. +..+|+|-+.-+...|+.. ....++.. -|+. +++.-++ |.. T Consensus 162 ~------------------eiih~~~~~~-----d~~~G~spi~~~~~~i~~~-~~~~~~~~~~f~ng~~~~gil~~~~~ 217 (421) T protein:vir:10 162 R------------------MMHHVKVFSL-----DGYIGSSPIQTNADVLGLN-LAVEEHASAVFRRGATMSGVIERPKE 217 (421) T ss_pred h------------------hEEEecCcCC-----CCcccccHHHHHHHHHHHH-HHHHHHHHHHHhcCCCccEEEEecCc Confidence 1 1334544322 2356999888777777654 34444444 4455 3444433 111 Q ss_pred HhccCCCCcccccCccCCcccceeeeecC------CCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCC Q lcl|Aclame:pro 309 MLRTVPDESGMPPPQVFDPDVNVYKSIRM------GTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDG 382 (517) Q Consensus 309 ~l~~~~~~~~~~~~~~fd~~~~~y~~~~~------~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~ 382 (517) +-.......-......|. ..|.+... =+++-.++.++......++.+..+...+.|+...|++|..+++.. T Consensus 218 ~~~~~~~e~~~~~~~~~~---~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~ 294 (421) T protein:vir:10 218 APAIKSQEKIDQLLAKWT---DRYSGINNMFSVALLQEGMSYKQMSQDNEKAQLLQSRQWGVEEVCRLYKIPPHMVQMLA 294 (421) T ss_pred cCccCCHHHHHHHHHHHH---HHhcCccccCcceecCCCceEEecCCChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCCc Confidence 100000000000000010 11221110 023334566666666777888888888899999999999998755 Q ss_pred Ccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHH Q lcl|Aclame:pro 383 RSM-KTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQ 461 (517) Q Consensus 383 ~~~-~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~ 461 (517) .+. .++.+. . ...++.+|.-++..|-...+. .++.........|.++.+.-+..|..+.++...+ T Consensus 295 ~~t~sn~e~~---~----------~~f~~~tl~P~~~~ie~~ln~-kL~~~~~~~~~~v~fd~~~l~~~d~~~~~~~~~~ 360 (421) T protein:vir:10 295 KATNNNIEHQ---G----------LQFVMYTLLAWLKRHEGALQR-DLLLPSERRDLYIEFNVSGLLRGDQKSRYESYAL 360 (421) T ss_pred CCccccHHHH---H----------HHHHHHHHHHHHHHHHHHHhh-hccCccccCCeEEEEechhhhccCHHHHHHHHHH Confidence 432 222111 1 112222333333333221111 1222111223346666666667899999999999 Q ss_pred HHhcCCCCHHHHHHhhCCCCHH-HHHHHHHHHHHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 462 AKTFGFIPTVEAIQRIFKVPKK-TAEQWLEEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 462 ~~~~G~~S~~~~l~~~~~~~ee-ea~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) ++.+|+|+.-++++. .|+..- ..++-+.... .........+........+.|+ T Consensus 361 ~~~~G~~T~NE~R~~-~gl~p~~ggD~~~~~~n--~~~~~~~~~~~~~~~~~~~~e~ 414 (421) T protein:vir:10 361 GRQWGWLSVNDIRRM-ENLPPIAGGDKYLTPLN--MVDSAQIIPGDKKPTAQQMAEI 414 (421) T ss_pred HHhCCCcCHHHHHHH-hCCCCCCCcceeeeccc--cccccccccCCCCcccccCccc Confidence 999999999997654 465432 1222111110 0000111111111122223333 No 204 >protein:vir:101806 Length: 516 # NCBI annotation: gp20 # Family: family:all:1036 # MgeID: mge:1580 # MgeName: 31 # Cross-refs: genbank:acc:YP_238883;genbank:gi:66391958;genbank:GeneID:3416633 Probab=96.63 E-value=0.00045 Score=38.91 Aligned_cols=427 Identities=13% Similarity=0.137 Sum_probs=199.0 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCH--------------------------------HHHHHHHHHHHH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDP--------------------------------NELARIERNLRQ 48 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------------------------------~~~~~i~~~~~~ 48 (517) |+|.+-.+-|++.-..... +.+++ ....++.|. ...+-|++++.+ T Consensus 1 ~~~~~lf~f~~~~d~~~~~-~~~~~--~~~s~~~p~~~dGa~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~eLI~~YR~m 77 (516) T protein:vir:10 1 MKFLDLFKFWDRVDQNEYD-ERLKL--GHESIATPKKDDGATEIETREGEATYNAVMQQFFGIDNNISGTKDLINTYRQL 77 (516) T ss_pred CCchHhcccccchhhhHHh-hhhcC--CcCcccCCCCCCCceeeecCCCcccccceeeeeeccccccchHHHHHHHHHHH Confidence 8888777776653222111 11110 000011110 122233344443 Q ss_pred hcCCCcccccccccCccccccccccChHHHHHHHHhhhhc----CCcceeEecCcccccccccchhHHHHHHHHHHhhhh Q lcl|Aclame:pro 49 YEGDYPQVEYINSQGKIQERDYMTLNLRKLSADVLSGLVF----NEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNK 124 (517) Q Consensus 49 Y~g~~~~~~~~~~~~~~~~~~~~~ln~~~~i~~~~A~ll~----~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~ 124 (517) +.. |.+. ..|-.-.-+.++ .+++++.+++... .+...++-.+..+.++.--+ T Consensus 78 a~~--pEvd-------------------~Av~eIVneaiv~d~~~~pV~l~L~~~~~---s~~ik~kI~eeF~~Il~ll~ 133 (516) T protein:vir:10 78 INN--PEVE-------------------RAVANIVNEAIVYERGHKVVSLDLDDTDF---GSNVKEKILEEFDEVCRLLD 133 (516) T ss_pred hhc--cchh-------------------hHHHHhhcceeEecCCCceEEEEecccCc---chHHHHHHHHHHHHHHHHhc Confidence 211 1110 111111111111 1244455544331 12223345566677777778 Q ss_pred HHHHHHHHHHHHHhhCCEEEEEEEeC---CeeEEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEee Q lcl|Aclame:pro 125 FIKNLSDYLEPTFALGGLTVRPYVDN---GEIEFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEW 201 (517) Q Consensus 125 f~~~~~~~~~~a~~~G~~~~k~~~d~---g~~~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~ 201 (517) |.++..+....+.+.|..+||-++|+ |=..+..++|.++.++..--.....++.+ .++ |. |++.+ T Consensus 134 F~~~~~~~fR~WYVDgRi~fhKiid~~k~GI~Elr~lDPr~i~~vR~i~~~~~~~~~v------~~~----~~--e~~~Y 201 (516) T protein:vir:10 134 ASRKLDTLFRRWYVDSRIFFHKIMPNPKKGIAELRRLDPRFMEYYREIVTSDIGGTTI------VKG----YR--EFFIY 201 (516) T ss_pred cchhhhHHHhhhhhcceEEEEEEecCccccceeeeeeCCcceeeEeeecccccccchh------hhh----hh--heeee Confidence 99999999999999999999988885 44568889999888764311110111100 000 10 11111 Q ss_pred cceeeccceEEEEEEEeecCCccccCcccccccccCCCCcc-eEE-c-CCCcceEEEecCCccccccCCCCCCcchhhhh Q lcl|Aclame:pro 202 EKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEGMQEK-TYI-Q-GLSRPLFNYLKPSGFNNINPHSPLGLGITDNS 278 (517) Q Consensus 202 ~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~-~~~-~-g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~ 278 (517) .. +...|.+.-..|.. +++|- ++.. +++ + |+ + +.....-+|-+..| T Consensus 202 ~~---~~~~~~~~g~~~~~------~~~ik-------I~~dAI~y~hSGL-------~--------d~~~~~i~syLhkA 250 (516) T protein:vir:10 202 TT---GNEGYSYNGRIFEP------NTRIK-------IPRSAVVYASSGL-------M--------DCSDRGIIGYLHNA 250 (516) T ss_pred cc---CccccccccceeCC------Cccee-------echhheeeecccc-------e--------eCCCCceeeeehhh Confidence 10 00011111111211 11111 1111 111 1 11 0 00111113444444 Q ss_pred HHHHHHHHHHHHHHHHHH---Hhccceeec-c---------hHHhcc---------CCCCcccccCccCCcccceeeeec Q lcl|Aclame:pro 279 VSTLKKINDTYDQFWWEI---KMGQRTVFV-S---------DVMLRT---------VPDESGMPPPQVFDPDVNVYKSIR 336 (517) Q Consensus 279 ~~lid~lD~~~s~~~~e~---~~~~~~i~v-~---------~~~l~~---------~~~~~~~~~~~~fd~~~~~y~~~~ 336 (517) .-.+-.| +..-..+-.+ |.-.+|||- + +.+|+. .-+...+. -.|.+.++++. T Consensus 251 iKp~NQL-km~EDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~kNklvYDa~TGe-----v~ddrk~msMl 324 (516) T protein:vir:10 251 VKPANQL-KLLEDAMVIYRITRAPERRVFYIDVGNMNNRKATEYVNGIMQSLKNRVVYDSNTGT-----VKNQKRNLSMT 324 (516) T ss_pred hHhHHhh-HHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEEeCCCCe-----eccchhhhhhH Confidence 4433333 2222223333 455567753 1 111111 00111111 12333344432 Q ss_pred C------CCCCCc--ceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCc-c--chHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 337 M------GTDEEF--VKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRS-M--KTATEIVSENDLTYRTRNDH 405 (517) Q Consensus 337 ~------~~~~~~--v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~-~--~TAtei~a~~~~~~~t~~~~ 405 (517) - -+++.+ |+++... .--.-.+-++-+.+.+....+.+.+-+..++++ . .-++||.-.+-....-+.++ T Consensus 325 EDyWLpRReGgrgTEItTLpGg-qnlgem~DV~YF~kkLy~aLnVP~sRl~~e~~~~~~~Gr~~EItRDEiKF~KFI~rL 403 (516) T protein:vir:10 325 EDYWLMRRDGKSVTEVSSLPGA-QTMGDMDDVRWFNKKLYEALRIPLSRIPRDDGGMVIGGQDTAITRDELDFRKFVVQL 403 (516) T ss_pred hhhcccccCCCCccceeecccc-CCcChHHHHHHHHHHHHHHhCCCcccccCCCCceeeccccchhhHHHHHHHHHHHHH Confidence 1 133333 4444322 212233445566677888888888877755542 2 45677776665666677788 Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCCCCCc--cceEEEeCCCccCCHHHHHHHHHHH---------HhcCCCCHHHHH Q lcl|Aclame:pro 406 VYEVEQFIKGLVISVLELAKTYKLFGGEIPSA--EHIGVDFDDGVFQDRSALLRFYGQA---------KTFGFIPTVEAI 474 (517) Q Consensus 406 ~~~~~~al~~li~~il~~~~~~~~~~~~~~~~--~~v~i~f~d~i~~d~~~~~~~~~~~---------~~~G~~S~~~~l 474 (517) +..|..-+.++++.=|-|- +.+....+.. ..|.++|...---.+..+++.+.+- .-+...|.+... T Consensus 404 R~rFs~lf~~~L~~qLilK---giit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~s~~yi~ 480 (516) T protein:vir:10 404 QHDFEEIFLDPLKTNLIYK---RIITEDEWDEQINNIKVNFHQDSYYTELKDIETLRLRVDALSQIEPYVGKYVSHDYVM 480 (516) T ss_pred HHHHHHHHHHHHHHhhhhc---cCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhccccchHHHH Confidence 8888888888877765432 2222222322 4577777655444444444433221 123468888877 Q ss_pred HhhCCCCHHHHHHHHHHHHHhcccc---CCCCCccc Q lcl|Aclame:pro 475 QRIFKVPKKTAEQWLEEIRKDQIEL---DPVTISQR 507 (517) Q Consensus 475 ~~~~~~~eeea~~el~~i~~E~~~~---~~~~~~~~ 507 (517) ++...+||+|.++|.+.|++|..+. +|...+.+ T Consensus 481 k~ILr~tDeei~~e~k~I~~E~~~~~~~~p~~~~~f 516 (516) T protein:vir:10 481 KNILQMTEEQIAQEEKQIEQEAGIKRFQNPENEDDF 516 (516) T ss_pred HHHhcCCHhhHHHHHHHHHHhhhCCCCCCCCccccC Confidence 7888999999999999999987543 11111111 No 205 >protein:vir:101189 Length: 516 # NCBI annotation: portal vertex protein of head # Family: family:all:1036 # MgeID: mge:1582 # MgeName: 44RR2.8t # Cross-refs: genbank:acc:NP_932511;genbank:gi:37651637;genbank:GeneID:2610682 Probab=96.63 E-value=0.00045 Score=38.91 Aligned_cols=427 Identities=13% Similarity=0.137 Sum_probs=199.0 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCH--------------------------------HHHHHHHHHHHH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDP--------------------------------NELARIERNLRQ 48 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------------------------------~~~~~i~~~~~~ 48 (517) |+|.+-.+-|++.-..... +.+++ ....++.|. ...+-|++++.+ T Consensus 1 ~~~~~lf~f~~~~d~~~~~-~~~~~--~~~s~~~p~~~dGa~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~eLI~~YR~m 77 (516) T protein:vir:10 1 MKFLDLFKFWDRVDQNEYD-ERLKL--GHESIATPKKDDGATEIETREGEATYNAVMQQFFGIDNNISGTKDLINTYRQL 77 (516) T ss_pred CCchHhcccccchhhhHHh-hhhcC--CcCcccCCCCCCCceeeecCCCcccccceeeeeeccccccchHHHHHHHHHHH Confidence 8888777776653222111 11110 000011110 122233344443 Q ss_pred hcCCCcccccccccCccccccccccChHHHHHHHHhhhhc----CCcceeEecCcccccccccchhHHHHHHHHHHhhhh Q lcl|Aclame:pro 49 YEGDYPQVEYINSQGKIQERDYMTLNLRKLSADVLSGLVF----NEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNK 124 (517) Q Consensus 49 Y~g~~~~~~~~~~~~~~~~~~~~~ln~~~~i~~~~A~ll~----~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~ 124 (517) +.. |.+. ..|-.-.-+.++ .+++++.+++... .+...++-.+..+.++.--+ T Consensus 78 a~~--pEvd-------------------~Av~eIVneaiv~d~~~~pV~l~L~~~~~---s~~ik~kI~eeF~~Il~ll~ 133 (516) T protein:vir:10 78 INN--PEVE-------------------RAVANIVNEAIVYERGHKVVSLDLDDTDF---GSNVKEKILEEFDEVCRLLD 133 (516) T ss_pred hhc--cchh-------------------hHHHHhhcceeEecCCCceEEEEecccCc---chHHHHHHHHHHHHHHHHhc Confidence 211 1110 111111111111 1244455544331 12223345566677777778 Q ss_pred HHHHHHHHHHHHHhhCCEEEEEEEeC---CeeEEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEee Q lcl|Aclame:pro 125 FIKNLSDYLEPTFALGGLTVRPYVDN---GEIEFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEW 201 (517) Q Consensus 125 f~~~~~~~~~~a~~~G~~~~k~~~d~---g~~~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~ 201 (517) |.++..+....+.+.|..+||-++|+ |=..+..++|.++.++..--.....++.+ .++ |. |++.+ T Consensus 134 F~~~~~~~fR~WYVDgRi~fhKiid~~k~GI~Elr~lDPr~i~~vR~i~~~~~~~~~v------~~~----~~--e~~~Y 201 (516) T protein:vir:10 134 ASRKLDTLFRRWYVDSRIFFHKIMPNPKKGIAELRRLDPRFMEYYREIVTSDIGGTTI------VKG----YR--EFFIY 201 (516) T ss_pred cchhhhHHHhhhhhcceEEEEEEecCccccceeeeeeCCcceeeEeeecccccccchh------hhh----hh--heeee Confidence 99999999999999999999988885 44568889999888764311110111100 000 10 11111 Q ss_pred cceeeccceEEEEEEEeecCCccccCcccccccccCCCCcc-eEE-c-CCCcceEEEecCCccccccCCCCCCcchhhhh Q lcl|Aclame:pro 202 EKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEGMQEK-TYI-Q-GLSRPLFNYLKPSGFNNINPHSPLGLGITDNS 278 (517) Q Consensus 202 ~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~-~~~-~-g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~ 278 (517) .. +...|.+.-..|.. +++|- ++.. +++ + |+ + +.....-+|-+..| T Consensus 202 ~~---~~~~~~~~g~~~~~------~~~ik-------I~~dAI~y~hSGL-------~--------d~~~~~i~syLhkA 250 (516) T protein:vir:10 202 TT---GNEGYSYNGRIFEP------NTRIK-------IPRSAVVYASSGL-------M--------DCSDRGIIGYLHNA 250 (516) T ss_pred cc---CccccccccceeCC------Cccee-------echhheeeecccc-------e--------eCCCCceeeeehhh Confidence 10 00011111111211 11111 1111 111 1 11 0 00111113444444 Q ss_pred HHHHHHHHHHHHHHHHHH---Hhccceeec-c---------hHHhcc---------CCCCcccccCccCCcccceeeeec Q lcl|Aclame:pro 279 VSTLKKINDTYDQFWWEI---KMGQRTVFV-S---------DVMLRT---------VPDESGMPPPQVFDPDVNVYKSIR 336 (517) Q Consensus 279 ~~lid~lD~~~s~~~~e~---~~~~~~i~v-~---------~~~l~~---------~~~~~~~~~~~~fd~~~~~y~~~~ 336 (517) .-.+-.| +..-..+-.+ |.-.+|||- + +.+|+. .-+...+. -.|.+.++++. T Consensus 251 iKp~NQL-km~EDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~kNklvYDa~TGe-----v~ddrk~msMl 324 (516) T protein:vir:10 251 VKPANQL-KLLEDAMVIYRITRAPERRVFYIDVGNMNNRKATEYVNGIMQSLKNRVVYDSNTGT-----VKNQKRNLSMT 324 (516) T ss_pred hHhHHhh-HHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEEeCCCCe-----eccchhhhhhH Confidence 4433333 2222223333 455567753 1 111111 00111111 12333344432 Q ss_pred C------CCCCCc--ceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCc-c--chHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 337 M------GTDEEF--VKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRS-M--KTATEIVSENDLTYRTRNDH 405 (517) Q Consensus 337 ~------~~~~~~--v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~-~--~TAtei~a~~~~~~~t~~~~ 405 (517) - -+++.+ |+++... .--.-.+-++-+.+.+....+.+.+-+..++++ . .-++||.-.+-....-+.++ T Consensus 325 EDyWLpRReGgrgTEItTLpGg-qnlgem~DV~YF~kkLy~aLnVP~sRl~~e~~~~~~~Gr~~EItRDEiKF~KFI~rL 403 (516) T protein:vir:10 325 EDYWLMRRDGKSVTEVSSLPGA-QTMGDMDDVRWFNKKLYEALRIPLSRIPRDDGGMVIGGQDTAITRDELDFRKFVVQL 403 (516) T ss_pred hhhcccccCCCCccceeecccc-CCcChHHHHHHHHHHHHHHhCCCcccccCCCCceeeccccchhhHHHHHHHHHHHHH Confidence 1 133333 4444322 212233445566677888888888877755542 2 45677776665666677788 Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCCCCCc--cceEEEeCCCccCCHHHHHHHHHHH---------HhcCCCCHHHHH Q lcl|Aclame:pro 406 VYEVEQFIKGLVISVLELAKTYKLFGGEIPSA--EHIGVDFDDGVFQDRSALLRFYGQA---------KTFGFIPTVEAI 474 (517) Q Consensus 406 ~~~~~~al~~li~~il~~~~~~~~~~~~~~~~--~~v~i~f~d~i~~d~~~~~~~~~~~---------~~~G~~S~~~~l 474 (517) +..|..-+.++++.=|-|- +.+....+.. ..|.++|...---.+..+++.+.+- .-+...|.+... T Consensus 404 R~rFs~lf~~~L~~qLilK---giit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~s~~yi~ 480 (516) T protein:vir:10 404 QHDFEEIFLDPLKTNLIYK---RIITEDEWDEQINNIKVNFHQDSYYTELKDIETLRLRVDALSQIEPYVGKYVSHDYVM 480 (516) T ss_pred HHHHHHHHHHHHHHhhhhc---cCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhccccchHHHH Confidence 8888888888877765432 2222222322 4577777655444444444433221 123468888877 Q ss_pred HhhCCCCHHHHHHHHHHHHHhcccc---CCCCCccc Q lcl|Aclame:pro 475 QRIFKVPKKTAEQWLEEIRKDQIEL---DPVTISQR 507 (517) Q Consensus 475 ~~~~~~~eeea~~el~~i~~E~~~~---~~~~~~~~ 507 (517) ++...+||+|.++|.+.|++|..+. +|...+.+ T Consensus 481 k~ILr~tDeei~~e~k~I~~E~~~~~~~~p~~~~~f 516 (516) T protein:vir:10 481 KNILQMTEEQIAQEEKQIEQEAGIKRFQNPENEDDF 516 (516) T ss_pred HHHhcCCHhhHHHHHHHHHHhhhCCCCCCCCccccC Confidence 7888999999999999999987543 11111111 No 206 >protein:vir:93943 Length: 409 # NCBI annotation: ORF010 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1485 # MgeName: 3A # Cross-refs: genbank:acc:YP_239936;genbank:gi:66395598;genbank:GeneID:5131009 Probab=96.60 E-value=0.00048 Score=38.78 Aligned_cols=388 Identities=13% Similarity=0.077 Sum_probs=152.3 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccC-hHHHH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLN-LRKLS 79 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln-~~~~i 79 (517) =+++.++|+.+..-. +. ++....+ .|..|......-+.. .... +...+. --..| T Consensus 4 ~~~~~~~~~~~~~~~--~~-~~~~~~~----------------~~~~~~~~~~~~v~~-----~~~~-~~~~V~~ci~~I 58 (409) T protein:vir:93 4 ENIVTRIKKKLIDNW--ID-QSTSKLY----------------DFSPWKNRSFWGVIN-----NTLE-TNETIFSAITKL 58 (409) T ss_pred cchhhhhhhhhhhhh--hc-ccccccc----------------ccccccCccccccch-----hhhh-ccHHHHHHHHHH Confidence 356666666443210 00 1111111 111111111000000 0000 000000 01345 Q ss_pred HHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHH-HHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe-CCe-eEEE Q lcl|Aclame:pro 80 ADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQH-VFQHNKFIKNLSDYLEPTFALGGLTVRPYVD-NGE-IEFS 156 (517) Q Consensus 80 ~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~-~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d-~g~-~~i~ 156 (517) |+..|.| |..+.=.+. .....+...|.. --....-..-...++.+.+..|.+++.+..+ .|. ..+. T Consensus 59 a~~ia~l----p~~~~~~~~-------~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~ 127 (409) T protein:vir:93 59 SNSMASL----PLKMYEDYK-------VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLF 127 (409) T ss_pred HHhhhhC----ceeEeeccc-------cccchHHHHHhhhcccCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcEEEEE Confidence 6666653 211111111 111122222211 0000111222344566677788888887776 344 3566 Q ss_pred EEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCccccccccc Q lcl|Aclame:pro 157 WALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELY 236 (517) Q Consensus 157 ~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~ 236 (517) .++|+.+-++..++++. .+|+ + ...+ |..+.+ + T Consensus 128 ~l~~~~v~~~~~~~~~~-----------------~~y~------------------~-----~~~~----g~~~~~---~ 160 (409) T protein:vir:93 128 LLNPDVVEMLIENQSRE-----------------LYYS------------------I-----HAAT----GNKLIV---H 160 (409) T ss_pred EEcCceeEEEEeCCCcE-----------------EEEE------------------E-----EcCC----ceEEEE---c Confidence 67777766532222111 1111 0 0000 111110 0 Q ss_pred CCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeecchHHhccCCCC Q lcl|Aclame:pro 237 EGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRTVFVSDVMLRTVPDE 316 (517) Q Consensus 237 ~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~l~~~~~~ 316 (517) +. -+.||+.+.+ .+..+|+|.+.-+...++-.... ..+ .-...+.+.-++ +...... T Consensus 161 ---~~----------eVih~r~~~~----~~~~~G~s~i~~~~~~i~~~~~~-~~~-~~~~~~~~~~~i----~~~~~~l 217 (409) T protein:vir:93 161 ---NM----------DMLHFKHIVA----SNMVQGISPIDVLKNTTDFDNAV-RTF-NLTEMQKPDSFM----LKYGSNV 217 (409) T ss_pred ---cc----------cEEEeCCCCC----CCccccccHHHHHHHHHHHHHHH-HHH-HHHhcCCCCceE----EecCCCC Confidence 00 1345554211 12346888887666666544322 222 111222211111 1111111 Q ss_pred cccc---cCccCCcccceeee---ecCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCcc-chHH Q lcl|Aclame:pro 317 SGMP---PPQVFDPDVNVYKS---IRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSM-KTAT 389 (517) Q Consensus 317 ~~~~---~~~~fd~~~~~y~~---~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~-~TAt 389 (517) .... ....|.. .+.. +-.-+++-.++.++......++.+..+...+.|+...|++|..++....+. .++. T Consensus 218 ~~e~~~~~~~~~~~---~~~~~g~~~vl~~g~~~~~l~~~~~d~q~~e~r~~~~~~Ia~~fgVPp~~lg~~~~~~~sn~e 294 (409) T protein:vir:93 218 GKEKRQQVLEDFKQ---YYEENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFLNARSNTNFAKNE 294 (409) T ss_pred CHHHHHHHHHHHHH---HhhcCCCeeecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHH Confidence 1110 0001110 0110 000123333454554545667788777778889999999999998654332 2222 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCC-CCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCC Q lcl|Aclame:pro 390 EIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGE-IPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFI 468 (517) Q Consensus 390 ei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~-~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~ 468 (517) +. . ...++.+|.-++..|..-.+. .++... ......+.++++.-+..|..+.++.+.+++.+|++ T Consensus 295 ~~---~----------~~f~~~~l~P~~~~ie~~l~~-~Ll~~~~~~~~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~ 360 (409) T protein:vir:93 295 EL---N----------RFYLQHTLLPIVKQYEEEFNR-KLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYY 360 (409) T ss_pred HH---H----------HHHHHHHHHHHHHHHHHHHHh-hcCCcccccCcceEEeechhhhccCHHHHHHHHHHHHhCCCc Confidence 11 1 122222333333333221111 121111 11233455555555567889999999999999999 Q ss_pred CHHHHHHhhCCCCHHH-HHHHHHHHHHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 469 PTVEAIQRIFKVPKKT-AEQWLEEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 469 S~~~~l~~~~~~~eee-a~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) +.-++++. .|+..-+ .++-+- +....|.......+....|||| T Consensus 361 T~NE~R~~-~g~~p~~ggD~~~~-----~~n~~~~~~~~~~~~~~~gG~~ 404 (409) T protein:vir:93 361 TINDIREW-EDLPPVEGGDKPLI-----SGDLYPIDTPLELRKSLKGGDK 404 (409) T ss_pred CHHHHHHH-hCCCCCCCcCeeee-----cccccccccchhhcccccCCCC Confidence 99997654 4654321 111110 0011111111111122233333 No 207 >protein:vir:94426 Length: 409 # NCBI annotation: ORF009 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1506 # MgeName: 47 # Cross-refs: genbank:acc:YP_240003;genbank:gi:66395665;genbank:GeneID:5133086 Probab=96.57 E-value=0.00051 Score=38.65 Aligned_cols=388 Identities=13% Similarity=0.075 Sum_probs=151.8 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCcccccccccc-ChHHHH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTL-NLRKLS 79 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~l-n~~~~i 79 (517) =+++.+||+.+.. .++. ++.. .+..|..|....+..+... ... +...+ .--..| T Consensus 4 ~~~~~~~k~~~~~--~~~~-~~~~----------------~~~~~~~~~~~~~~~v~~~-----~a~-~~~~v~~~i~~I 58 (409) T protein:vir:94 4 ENIVTRIKKKLID--NWID-QSAS----------------KLYDFSPWKNKSFWGVINN-----TLE-TNETIFSAITKL 58 (409) T ss_pred cccchhhhhHHhh--hhhc-CCcc----------------cccccccccCccccccchh-----hhh-ccHHHHHHHHHH Confidence 2456666654410 1100 1100 0111211211111111000 000 00000 001356 Q ss_pred HHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHH-HHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe-CCee-EEE Q lcl|Aclame:pro 80 ADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQH-VFQHNKFIKNLSDYLEPTFALGGLTVRPYVD-NGEI-EFS 156 (517) Q Consensus 80 ~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~-~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d-~g~~-~i~ 156 (517) |+..|++= ..+.=... .....+...|.. --....-..-...++.+.+..|.+++.+..+ .|.+ .+. T Consensus 59 a~~ia~lp----~~~~~~~~-------~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~ 127 (409) T protein:vir:94 59 SNSMASLP----LKMYEDYK-------VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLF 127 (409) T ss_pred HHhhhhCc----eeEeeccc-------ccchhHHHHHhhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEE Confidence 66666541 11110111 111122222221 1111111222334566677789888877766 4543 566 Q ss_pred EEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCccccccccc Q lcl|Aclame:pro 157 WALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELY 236 (517) Q Consensus 157 ~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~ 236 (517) .++|+.+-++..++++. .+|+ + ...+ |..+.+ + T Consensus 128 ~l~~~~v~v~~~~~~~~-----------------~~y~------------------~-----~~~~----g~~~~~---~ 160 (409) T protein:vir:94 128 LLNPDVVEMLIENQSRE-----------------LYYS------------------I-----HAAT----GNKLIV---H 160 (409) T ss_pred EEcCceeEEEEeCCCcE-----------------EEEE------------------E-----EcCC----ceEEEE---c Confidence 67777776542222111 1111 0 0000 111100 0 Q ss_pred CCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeecchHHhccCCCC Q lcl|Aclame:pro 237 EGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRTVFVSDVMLRTVPDE 316 (517) Q Consensus 237 ~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~l~~~~~~ 316 (517) +. -++||+.+.+ .+..+|+|.+.-+...++..... ..+ .-...+++.-++ +...... T Consensus 161 ---~~----------dvih~r~~~~----~~~~~G~s~l~~~~~~i~~~~~~-~~~-~~~~~~~~~~~i----~~~~~~l 217 (409) T protein:vir:94 161 ---NM----------DMLHFKHIVA----SNMVQGISPIDVLKNTTDFDNAV-RTF-NLTEMQKPDSFM----LKYGSNV 217 (409) T ss_pred ---cc----------cEEEecCCCC----CCccccccHHHHHHHHHHHHHHH-HHH-HHHhcCCCCeeE----EecCCCC Confidence 00 1345654311 13346888887666666543322 222 111222221111 1111111 Q ss_pred cccc---cCccCCcccceeee---ecCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCcc-chHH Q lcl|Aclame:pro 317 SGMP---PPQVFDPDVNVYKS---IRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSM-KTAT 389 (517) Q Consensus 317 ~~~~---~~~~fd~~~~~y~~---~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~-~TAt 389 (517) .... ....|.. .|.. +-.-+++-.++.++......++.+..+...++|+..-|++|..++..+.+. .+.. T Consensus 218 ~~e~~~~~~~~~~~---~~~~~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~sn~e 294 (409) T protein:vir:94 218 GKEKRQQVLEDFKQ---YYEENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFLNARSNTNFAKNE 294 (409) T ss_pred CHHHHHHHHHHHHH---HhhcCCCeeecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHH Confidence 1110 0011110 0110 000123333455555555667788887778899999999999998644322 2221 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCC-CCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCC Q lcl|Aclame:pro 390 EIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGE-IPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFI 468 (517) Q Consensus 390 ei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~-~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~ 468 (517) +. . ...++.+|.-++..|....+. .++... ......+.++.++-+..|..+.++...+++.+|+| T Consensus 295 ~~---~----------~~f~~~~l~P~~~~ie~~ln~-~Ll~~~~~~~~~~i~fd~~~ll~~d~~~~~~~~~~~~~~G~~ 360 (409) T protein:vir:94 295 EL---N----------RFYLQHTLLPIVKQYEEEFNR-KLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYY 360 (409) T ss_pred HH---H----------HHHHHHHHHHHHHHHHHHHHH-hhCCcccccCcceEEeechhhhccCHHHHHHHHHHHHhCCCc Confidence 11 1 111222233333322211111 111111 11223455555555668889999999999999999 Q ss_pred CHHHHHHhhCCCCHHH-HHHHHHHHHHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 469 PTVEAIQRIFKVPKKT-AEQWLEEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 469 S~~~~l~~~~~~~eee-a~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) +.-+++. ..|+..-+ .++-+. +....|.......+....|||| T Consensus 361 T~NE~R~-~~g~~p~~ggD~~~~-----~~n~~~~~~~~~~~~~~kGG~~ 404 (409) T protein:vir:94 361 TINDIRE-WEDLPPVEGGDKPLI-----SGDLYPIDTPLELRKSLKGGDK 404 (409) T ss_pred CHHHHHH-HhCCCCCCCcCeEee-----cccccccccchhhcccccCCCC Confidence 9999765 44654321 111110 0011111111111122334444 No 208 >protein:vir:106282 Length: 521 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:1474 # MgeName: Aeh1 # Cross-refs: genbank:acc:NP_944108;genbank:gi:38640152;genbank:GeneID:2658030 Probab=96.51 E-value=0.00056 Score=38.43 Aligned_cols=428 Identities=10% Similarity=0.102 Sum_probs=195.9 Q ss_pred Cch--HHHHHHHHHHHHHHhhcccchhhhccccCcCCH---------------------------------HHHHHHHHH Q lcl|Aclame:pro 1 MKV--IQRIKNFFKRGGYALSGQTLKSINDHEKINIDP---------------------------------NELARIERN 45 (517) Q Consensus 1 m~~--~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~---------------------------------~~~~~i~~~ 45 (517) |.. .+-+|-|++.--.... +.+++ ....++.|. ...+-|+++ T Consensus 1 m~~~~l~lf~f~~k~~e~~~~-~~~~~--~~~s~~~p~~~dGa~~I~~~~~~~~~~~~~~~~~~~~~~~~~n~~eLI~~Y 77 (521) T protein:vir:10 1 MNPIFLKLLQPWMKDDEKRVQ-SDLSD--RIDSFAVPDTADGAIEVDKQIDTTAPKTAIVQSVLGYAPKIQNTKDLINQY 77 (521) T ss_pred CCcchhHHhhhhhhhhhhHHh-hhhcc--CccccccccCCCCceeeccCCCccccccchhhhhhccccccchHHHHHHHH Confidence 433 2223334332111111 00100 000011110 112223333 Q ss_pred HHHhcCCCcccccccccCccccccccccChHHHHHHHHhhhhc----CCcceeEecCcccccccccchhHHHHHHHHHHh Q lcl|Aclame:pro 46 LRQYEGDYPQVEYINSQGKIQERDYMTLNLRKLSADVLSGLVF----NEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQ 121 (517) Q Consensus 46 ~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~~~i~~~~A~ll~----~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~ 121 (517) |.++.. |.+ -..|-.-.-+.++ .+++++.+++.... +...++-.+..+.++. T Consensus 78 R~ma~~--pEv-------------------d~Av~eIvneaiv~d~~~~pV~i~Ld~~~~s---~~iK~kI~eeF~~Il~ 133 (521) T protein:vir:10 78 RSLSKY--HEV-------------------DNAIDEIINDAIVQEDNRDTVYLDLDKTDWN---ESVKEMVREEFRTILK 133 (521) T ss_pred HHHhhc--cch-------------------hhHHHhhhcceEEecCCCceEEEEecCcccc---hHHHHHHHHHHHHHHH Confidence 333211 111 0111111111222 22455555443322 2223345566777887 Q ss_pred hhhHHHHHHHHHHHHHhhCCEEEEEEEeCC-----eeEEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEE Q lcl|Aclame:pro 122 HNKFIKNLSDYLEPTFALGGLTVRPYVDNG-----EIEFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLL 196 (517) Q Consensus 122 ~n~f~~~~~~~~~~a~~~G~~~~k~~~d~g-----~~~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~l 196 (517) --+|.++..+....+.+.|..+||..+|.. =..+..++|.++-++.........++.+ .++ | . T Consensus 134 ll~F~~~~~~~fR~WYVDgRi~fHkiid~~~pk~GI~Elr~lDPr~i~~vr~i~k~~~~~~~v------~~~----~--~ 201 (521) T protein:vir:10 134 LLKFEREGKRHFRRWYVDSRIYFHKMIDPARPKDGIKELRLLDPRNVEYYRVNLKSNENGNDV------YKG----V--K 201 (521) T ss_pred HhccchhhhHHHhhheeeeeEEEEEEeeCCCccccceeeeeeCCcceeeeeeecCCCCCcchh------hcc----c--e Confidence 778999999999999999999999999843 3457888888876542211110011000 000 0 1 Q ss_pred EEEeecceeeccceEEEEEEEeecCCccccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhh Q lcl|Aclame:pro 197 EFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITD 276 (517) Q Consensus 197 E~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~ 276 (517) |++.+... + +..|.......-|.++|-+ .++ |++. --.+...+..+|-+. T Consensus 202 e~f~Y~~~----~-----~~~~~~~g~~~~~vkI~~d--------aI~--------y~hS-----GL~d~~~~~i~syLh 251 (521) T protein:vir:10 202 EFFTYGAT----E-----DNRYNISGNSNNLVQIPID--------AIV--------YSHS-----GKVDIDGKTIVGYLH 251 (521) T ss_pred eeeeeccC----C-----CceecCCCCCCcceeechh--------hee--------eecc-----cceeCCCCceeccch Confidence 22222110 0 0111111111111122211 111 1110 011234456678777 Q ss_pred hhHHHHHHHHHHHHHHHHHH---Hhccceeec-c---------hHHhcc-----------CCCCcccccCccCCccccee Q lcl|Aclame:pro 277 NSVSTLKKINDTYDQFWWEI---KMGQRTVFV-S---------DVMLRT-----------VPDESGMPPPQVFDPDVNVY 332 (517) Q Consensus 277 ~~~~lid~lD~~~s~~~~e~---~~~~~~i~v-~---------~~~l~~-----------~~~~~~~~~~~~fd~~~~~y 332 (517) .|.-.+-.| +..-..+-.+ |.-.+|||- + +.+|+. +..+|.. .|.+.+ T Consensus 252 kAiKp~NQL-km~EDAlVIYRitRAPeRRvFYIDvGnlpk~KAeqYl~~iM~k~kNklVYDa~TGev-------~ddrk~ 323 (521) T protein:vir:10 252 NVIKPANQL-KMLEDAMVIYRITRAPERRVFYIDVGTMPNKKATQHLNNVMQGLKNRVVYDSSTGKV-------KNSSNN 323 (521) T ss_pred hhhHhHHhh-HHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceEEEeccCcee-------ccchhh Confidence 776655555 3333333344 455667763 1 111111 1122211 233334 Q ss_pred eeecC------CCCCCc--ceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCc--cchHHHHHHHHHHHHHHH Q lcl|Aclame:pro 333 KSIRM------GTDEEF--VKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRS--MKTATEIVSENDLTYRTR 402 (517) Q Consensus 333 ~~~~~------~~~~~~--v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~--~~TAtei~a~~~~~~~t~ 402 (517) +++.- -+++.+ |+++... .--.-.+-++-+.+.+....+.+.+-+..+++| ..-++||.-..-....-+ T Consensus 324 msMlEDyWLpRReGgrgTEI~TLpgg-qnlgem~DV~YF~kkLy~aLnVP~sRl~~e~~~f~~Gr~~EItRDEikF~KFI 402 (521) T protein:vir:10 324 LAMTEDYWLMRRDGKATTEVSTLPGA-QSMGEMDDVRWFNRKLYESMKIPLSRLPQEGAGVTFGAGNDITRDELQFTKYI 402 (521) T ss_pred hhhHhhhcccccCCCCccceeecccc-CCcChHHHHHHHHHHHHHHhCCCccccCCCCCceecccccchhHHHHHHHHHH Confidence 44321 133333 4444322 212233445556677777778877777655432 223466766665555677 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCc--cceEEEeCCCccCCHHHHHHHHHH---HH--hcC------CCC Q lcl|Aclame:pro 403 NDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSA--EHIGVDFDDGVFQDRSALLRFYGQ---AK--TFG------FIP 469 (517) Q Consensus 403 ~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~--~~v~i~f~d~i~~d~~~~~~~~~~---~~--~~G------~~S 469 (517) .+++..|..-+.++++.=|-|- +.+....+.. ..|.++|...---.+..+++.+.+ +. ..+ ..| T Consensus 403 ~rLR~rFs~~f~~~L~~qLilK---giit~eew~~i~~~I~~~f~~Dn~f~ElKe~eil~~R~~~l~~~dp~~yvGky~s 479 (521) T protein:vir:10 403 RGLQQQFEPIFLNPLRTNLMLK---GKMSVSEWEEQAENIKVVFSKDSYYEEIKDVEILERRVNLVQTLASAEVTGKYLS 479 (521) T ss_pred HHHHHHHHHHHHHHHHHhhhhc---cCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHhhcCccccccccc Confidence 7788888888888877665432 2222222322 447777765544444444433321 11 123 578 Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 470 TVEAIQRIFKVPKKTAEQWLEEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 470 ~~~~l~~~~~~~eeea~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) .+...++...+||+|.+++.+.|++|..+.--... .-++| T Consensus 480 ~dyi~k~ILr~tDeeik~~~k~I~~E~~~~~~~~p--------~~e~~ 519 (521) T protein:vir:10 480 HEYVMKNILRMSDEDIKTEREKIDGELKDSVYKNP--------EDPME 519 (521) T ss_pred hHHHHHHHhcCCHhHHHHHHHHHHHhhhCCCCCCC--------cchhh Confidence 88877778899999999999999998764311100 01111 No 209 >protein:vir:105782 Length: 449 # NCBI annotation: gp5 # Family: family:all:6783 # MgeID: mge:1501 # MgeName: ES18 # Cross-refs: genbank:acc:YP_224143;genbank:gi:62362218;genbank:GeneID:3342535 Probab=96.48 E-value=0.00058 Score=38.31 Aligned_cols=423 Identities=12% Similarity=0.051 Sum_probs=154.5 Q ss_pred hHHHHHH----HHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccChHHH Q lcl|Aclame:pro 3 VIQRIKN----FFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLRKL 78 (517) Q Consensus 3 ~~~~ik~----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~~~ 78 (517) |=+|+-- .+.++........+.+...... -.|-..|..| |.+.-+.+..- ..-+.+-.+++. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~rd~l~~~~~glg-------~~r~~~~~~~--g~~~~~~~~~l-----~~~Yr~~~ia~~ 66 (449) T protein:vir:10 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLD-------NKRHSAWCEY--GFPELVTYENL-----YSLYRRGGIAHG 66 (449) T ss_pred CchhhHHHHhhhcchhHHHHHHHHHHHHHhcCC-------cccchhhhhc--CCcccCCHHHH-----HHHHhcCchhHH Confidence 1111100 0000000000000000000000 0011123233 11111111000 011223467889 Q ss_pred HHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeCCeeEEEEE Q lcl|Aclame:pro 79 SADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDNGEIEFSWA 158 (517) Q Consensus 79 i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~g~~~i~~v 158 (517) |++..|+-+..+-+.|+ ++.+.++... .......+++++. .+++..+.++...+..+|++++-+-+++++.. T Consensus 67 iVd~~~d~~~~~~~~i~-~g~~~~~~~~--~~~~e~~~~~l~~-~~~~~~l~ea~~~~rl~Gga~i~i~v~d~~~l---- 138 (449) T protein:vir:10 67 AVEKLVGKCWQTNPEII-EGDDADDSED--ETSWEKKSKQVFT-NRLWRSFAEADRRRLVGRYAGILLHIRDEKDW---- 138 (449) T ss_pred HHHhhhhhhhhcCcccc-cCccccchhh--hHHHHHHHHHHHH-HHHHHHHHHHHHhhhccCcEEEEEEecCCCCC---- Confidence 99999987776666654 2222221111 1112233444443 46788888898888888888887767655432 Q ss_pred cCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccccCC Q lcl|Aclame:pro 159 LANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEG 238 (517) Q Consensus 159 ~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~ 238 (517) + -|+.. .+++.....++. ..... ..+++- . ..-.-.....|+|...+.. ...+ T Consensus 139 --~--~Pl~~-~~~i~~i~v~~~-~~i~~--~~~~~d-p---~sp~yg~P~~y~v~~~~~g--------~~~~------- 191 (449) T protein:vir:10 139 --N--LPATK-GRGLQKVSVSWA-GSLKV--AEWDTG-I---NSKTYGQPKLWKYTERLPN--------GSSR------- 191 (449) T ss_pred --C--ccccc-CcceeeEEeecc-ccCCh--hhhhcC-C---CCCCCCCceEEEEeeeccC--------CCcc------- Confidence 1 14321 112211111111 00000 000000 0 0000000112222221110 0000 Q ss_pred CCcceEEcCCCcceEEEecCCccccccCCCC-CCcchhhhhHHHHHHHHHHHHHHH-----HHHHh----ccceeec--c Q lcl|Aclame:pro 239 MQEKTYIQGLSRPLFNYLKPSGFNNINPHSP-LGLGITDNSVSTLKKINDTYDQFW-----WEIKM----GQRTVFV--S 306 (517) Q Consensus 239 l~~~~~~~g~~~p~f~~~~~~~~N~~~~~sp-lG~S~~~~~~~lid~lD~~~s~~~-----~e~~~----~~~~i~v--~ 306 (517) .+.+|- .|.+ .|. +.| -|+|.+..+-+-+-.++.+-..+. +..+. ..+.+-+ - T Consensus 192 ---~~~iH~-SRl~--~~~---------~~~~~g~~~L~~~yn~l~~~~~~~~~~a~~~l~~~~rq~~~~~~~~~~~~~l 256 (449) T protein:vir:10 192 ---RVDIHP-DRVF--ILG---------DYSEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNL 256 (449) T ss_pred ---ceeecc-ceeE--eec---------CCCCCChhHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhhh Confidence 001111 2211 110 001 166766666554444444321111 11110 0001100 0 Q ss_pred hHHhccCCCCcccccCccCCccccee-eeec--CCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCcccc-ccCC Q lcl|Aclame:pro 307 DVMLRTVPDESGMPPPQVFDPDVNVY-KSIR--MGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTF-SFDG 382 (517) Q Consensus 307 ~~~l~~~~~~~~~~~~~~fd~~~~~y-~~~~--~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~-~~~~ 382 (517) ..++..+...... .|....+.+ +..+ +-+.+.-+++++-. ...-...++...+.++-.+|++...| |-.. T Consensus 257 ~~~~~~~~e~~~~----~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~--~sgl~d~l~~~~q~iaaa~~IP~t~L~Gqsp 330 (449) T protein:vir:10 257 ASLYGVSIDELQD----KFNEVAGEINRGNDVLMTTQGATVTPLVTS--VADPTATYNVNLQTAAAGVDIPTRILIGNQQ 330 (449) T ss_pred hHHhhCCchHHHH----HHHHHHHHHhccchheeecCCcceEEEecc--cCChhHHHHHHHHHHHHHhCCCeeeeeccCc Confidence 1111100000000 011000000 1110 00122225444433 23444567777888888888875543 3222 Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHH Q lcl|Aclame:pro 383 RSMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQA 462 (517) Q Consensus 383 ~~~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~ 462 (517) +|. ++|+ ..+-.+..+...|..++..|+.|+..++... + + .+ ..+++|.|+.=-..++.+.++...+. T Consensus 331 ~gl-nst~---D~~nyyd~i~~~Q~~l~p~le~l~~~l~~s~----~-g-~~--~~d~~i~f~pL~~~t~kEkAei~k~~ 398 (449) T protein:vir:10 331 AER-SSTE---DQKYFNARCQSRRVDLSFEIEDFCDKLIELK----I-I-DA--VAKKAVIWDDLNEQTGTEKLTNAKTM 398 (449) T ss_pred ccc-ccch---hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh----c-C-CC--CCceeEEeCCCCCCCHHHHHHHHHHH Confidence 333 3343 2344667777778889999999998776431 1 1 22 24799999998888877776554433 Q ss_pred HhcCCCCHHHHHHhhC---CCCHHHHHHHHHHHHHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 463 KTFGFIPTVEAIQRIF---KVPKKTAEQWLEEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 463 ~~~G~~S~~~~l~~~~---~~~eeea~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) ..+ ..+ +...- -++.+|+++.+ ..+....++. .+..++...++.+ T Consensus 399 A~a----~~~-~~~ag~~~~~~~~EiR~~~---~~~~~~~~~~--~~e~~de~~~~~d 446 (449) T protein:vir:10 399 GEI----NQT-MLGSGDNPAFSREEIRTAA---GYDNDDEEPL--GEEDGDEEDKATD 446 (449) T ss_pred HHH----HHH-HHHccccCCcCHHHHHHHh---cccCCCCCCC--CCCCCccccccCC Confidence 221 111 11111 24555554332 1111111111 0100111111111 No 210 >protein:vir:4854 Length: 386 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:106 # MgeName: DT1 # Cross-refs: genbank:acc:NP_049394;genbank:gi:9632422;genbank:GeneID:1258515 Probab=96.44 E-value=0.00062 Score=38.16 Aligned_cols=368 Identities=8% Similarity=0.016 Sum_probs=146.1 Q ss_pred hhcccc-hhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCcccc-ccccccChH----HHHHHHHhhhhcCCc Q lcl|Aclame:pro 18 LSGQTL-KSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQE-RDYMTLNLR----KLSADVLSGLVFNEQ 91 (517) Q Consensus 18 ~~~~~~-~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~-~~~~~ln~~----~~i~~~~A~ll~~e~ 91 (517) |++... +.-...+. .....|.....+ +++.... .+.... +..+..+.- ..||+..|.+ + T Consensus 1 M~~f~~~~~~~~~~~--------~~~~~~~~~~~~--~~~~~~~-~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~----p 65 (386) T protein:vir:48 1 MPIFNITNLATESPP--------ISQGGFFDITDP--DFLSTLN-GSEWVSAESALRNSDLFSIINQLSNDLATV----K 65 (386) T ss_pred Ccccccccccccccc--------cccccccccccc--hhccccc-CCceechhhhhcchHHHHHHHHHHHhhccC----c Confidence 222111 10000000 000111111111 1111100 011111 111111111 3444444443 2 Q ss_pred ceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe-CCe-eEEEEEcCCeEEEEEEc Q lcl|Aclame:pro 92 CEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD-NGE-IEFSWALANAFYPLRSN 169 (517) Q Consensus 92 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d-~g~-~~i~~v~a~~~~P~~~~ 169 (517) +.+-+... ..+.+.-+. ......-++.++.+.+..|.+++.+..| +|. ..+..++|+.+-+.... T Consensus 66 --~~~~~~~~--------~~l~~~pN~---~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~L~~l~~~~v~v~~~~ 132 (386) T protein:vir:48 66 --LTASRKQL--------QGIIDNPSN---NANRFNFYQSIFAQMLLGGEAFAYRWRNENGRDMKWEYLRPSQVSFNRLD 132 (386) T ss_pred --eeeccchh--------HHHhhcCCC---CCCHHHHHHHHHHHhhhcCcEEEEEEECCCCcEEEEEEecCceeEEEEcC Confidence 22222111 111111111 1122233445566777788888877666 444 35677777776653221 Q ss_pred CCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccccCCCCcceEEcCCC Q lcl|Aclame:pro 170 SNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLS 249 (517) Q Consensus 170 ~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~~ 249 (517) .++ ..+|+ +. + ... ..|..+. ++ +. T Consensus 133 ~~~-----------------~~~y~------------------~~---~--~~~-~~~~~~~---~~---~~-------- 157 (386) T protein:vir:48 133 NKD-----------------GIYYN------------------IT---F--DDP-RIPPKQH---VP---QG-------- 157 (386) T ss_pred CCc-----------------eEEEE------------------EE---e--cCc-cccceeE---ec---Cc-------- Confidence 111 11111 00 0 000 0011000 00 00 Q ss_pred cceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHh-ccceeecchHHhccCCCCcccccCccCCcc Q lcl|Aclame:pro 250 RPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKM-GQRTVFVSDVMLRTVPDESGMPPPQVFDPD 328 (517) Q Consensus 250 ~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~-~~~~i~v~~~~l~~~~~~~~~~~~~~fd~~ 328 (517) -++||+.+.++ +..+|+|.+.-+...+.....+-....+-++. +.+..++ +............ +. T Consensus 158 --evih~~~~~~~----~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~ii-----~~~~~~~~e~~~~-~~-- 223 (386) T protein:vir:48 158 --DVLHFKLLSVD----GGLTSVSPLMALSRELNIQKASDKLTLNSLKNALNANGIL-----KIKGGGLLDFKTK-LS-- 223 (386) T ss_pred --cEEEecCCCCC----CceeeccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEE-----EeCCCCCHHHHHH-HH-- Confidence 14566644322 34579999888777776665444444455554 4444444 2211111100000 00 Q ss_pred cceeeeecCC-------CCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHHHHHHHHHHHH Q lcl|Aclame:pro 329 VNVYKSIRMG-------TDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVSENDLTYRT 401 (517) Q Consensus 329 ~~~y~~~~~~-------~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a~~~~~~~t 401 (517) +.+...... +++-.++.++......++.+..+...+.|+...|++|..+|+.++...+.++..+ T Consensus 224 -~~~~~~~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~e~~~~~-------- 294 (386) T protein:vir:48 224 -RSRQAMKQMQGGPLVLDDLEEFTPLEIKSNVSQLLKQADWTTGQFAKVYGIPENVVGGQGDQQSSLEMSLD-------- 294 (386) T ss_pred -HHHHHhhcCCCCceecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccHHHHHHH-------- Confidence 001000000 1222344455554556778888888899999999999999864433222222222 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCCHHHHHHhh--CC Q lcl|Aclame:pro 402 RNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTVEAIQRI--FK 479 (517) Q Consensus 402 ~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~~~l~~~--~~ 479 (517) .++.+|..++..|....+. .++. ++.+++...+-.|....+..+.+++.+|++++-+++..+ .| T Consensus 295 ------~~~~~l~P~~~~ie~~l~~-~l~~-------~~~~~~~~~~~~d~~~~~~~~~~l~~~g~~t~nE~r~~lg~~~ 360 (386) T protein:vir:48 295 ------LYNKAVSRYLRPFLSELSQ-KLSC-------DVDADILPAVDPTGSNSVSRINSMVKSGTLAQNQGLYILQQAE 360 (386) T ss_pred ------HHHHHHHHHHHHHHHHHHH-hhcc-------hhhcchhhhhccChHHHHHHHHHHHhCCCcCHHHHHHHhhcCC Confidence 2222233333322221110 1110 122222233445667777778888999999999877643 34 Q ss_pred CCHHHHHHHHHHHHHhccccCCCCCccccCCCCCCCC Q lcl|Aclame:pro 480 VPKKTAEQWLEEIRKDQIELDPVTISQRAQKRMFGDE 516 (517) Q Consensus 480 ~~eeea~~el~~i~~E~~~~~~~~~~~~~~~~~~G~e 516 (517) +...++ .+.. .....|.. +...+|.| T Consensus 361 ~~~~~~----~~~~--~~~~~~~~-----gGd~~~~~ 386 (386) T protein:vir:48 361 ILPKEL----PEGE--NPNKTTLK-----GGEINGED 386 (386) T ss_pred CCCccc----hhhc--CCCCCccC-----CCCCCCCC Confidence 544332 2211 11111110 11112222 No 211 >protein:vir:101648 Length: 518 # NCBI annotation: gp11 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1515 # MgeName: 244 # Cross-refs: genbank:acc:YP_654766;genbank:gi:109302764;genbank:GeneID:4156082 Probab=96.33 E-value=0.00073 Score=37.78 Aligned_cols=400 Identities=11% Similarity=0.025 Sum_probs=154.5 Q ss_pred HHHHhhcccchhhhccccCcCCHHHHHHHHHH-HHHhcCCCc---ccc-cccccCcccccccccc-ChHHHHHHHHhhhh Q lcl|Aclame:pro 14 GGYALSGQTLKSINDHEKINIDPNELARIERN-LRQYEGDYP---QVE-YINSQGKIQERDYMTL-NLRKLSADVLSGLV 87 (517) Q Consensus 14 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~-~~~Y~g~~~---~~~-~~~~~~~~~~~~~~~l-n~~~~i~~~~A~ll 87 (517) |. +.+.|.+. +|...+. .-| +..|.+.+- .+. .....+... .+...+ .--..||+..|+| T Consensus 1 ~~-~~~~~~~~----------~p~~~e~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~~V~acV~~IA~~iA~l- 66 (518) T protein:vir:10 1 ML-LANGQTLS----------APAMAEL-SPQMQDSYYYAPAVGMQLERQFSLYGGIY-KNQPWVRTVIAKRAQALARL- 66 (518) T ss_pred Cc-ccCceeec----------Cchhhhh-hhhhhcccccccccceecccccchhhHHH-hhhHHHHHHHHHHHHhhccC- Confidence 11 11122222 1211111 111 112222110 000 000000000 000011 1114566666654 Q ss_pred cCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe-CCee-EEEEEcCCeEEE Q lcl|Aclame:pro 88 FNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD-NGEI-EFSWALANAFYP 165 (517) Q Consensus 88 ~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d-~g~~-~i~~v~a~~~~P 165 (517) +..+.-.+..... ..........+.+--.......-.+.++.+.+..|.+++.+..+ +|++ .+..++|+.+.+ T Consensus 67 ---pl~l~~~~~~~~~--~~~~~~~~~Ll~~PN~~~t~~~F~~~lv~~lll~Gnay~~i~r~~~G~~~~L~~l~p~~v~v 141 (518) T protein:vir:10 67 ---PVKCMFTSGDTET--EESDTGYAKLLADPCEYLDPFAFWEWVASTLDIYGETYLAIQKNKSGTPEKLMPMHPSRVAI 141 (518) T ss_pred ---ceEEEEEcCCCce--eccchHHHHHHcCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCCceEE Confidence 2222111111000 01111111122111000011122334455666778888877766 3554 467777777665 Q ss_pred EEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccccCCCCcceEE Q lcl|Aclame:pro 166 LRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYI 245 (517) Q Consensus 166 ~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~ 245 (517) .....++. ..|+ |..... .-+..+ .+ T Consensus 142 ~~~~~~~~-----------------~~y~-----------------------~~~~~~-~~~~~~-------------~~ 167 (518) T protein:vir:10 142 KRNSRTGR-----------------YEYY-----------------------FQAGAG-VGTQLV-------------SF 167 (518) T ss_pred EEcCCCCE-----------------EEEE-----------------------EEecCC-ccceEE-------------Ee Confidence 32211111 0010 000000 000000 00 Q ss_pred cCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhc-cceeec--chHHhccCCCCcccccC Q lcl|Aclame:pro 246 QGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMG-QRTVFV--SDVMLRTVPDESGMPPP 322 (517) Q Consensus 246 ~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~-~~~i~v--~~~~l~~~~~~~~~~~~ 322 (517) .. . -+.||+.+.++ +...|+|.+.-+...|.....+-....+-|+.| .+..++ |..+ .+....... T Consensus 168 ~~-~--eViHir~~s~d----g~~~G~spi~~a~~~i~~~~a~~~~~~~~f~ng~~p~gil~~~~~l----s~e~~~~~k 236 (518) T protein:vir:10 168 AD-D--EVVPIRFFNPD----GLERGLSLMESLKSTIFSEDSSRNATAAMWKNAGRPNLVLRHEKRL----SEAAQQRLR 236 (518) T ss_pred cC-C--cEEEecCCCCC----cccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEecCCCC----CHHHHHHHH Confidence 00 0 14456554333 223689988877777666655544445556654 444433 1110 000000101 Q ss_pred ccCCcccceeeeecC------CCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCcc-chHHHHHHHH Q lcl|Aclame:pro 323 QVFDPDVNVYKSIRM------GTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSM-KTATEIVSEN 395 (517) Q Consensus 323 ~~fd~~~~~y~~~~~------~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~-~TAtei~a~~ 395 (517) ..|.. .|.+... =+++-.++.++......++.+..+...+.|+...|++|..+|+...+. .++.+ .. T Consensus 237 ~~~~~---~~~G~~nag~v~vL~~G~~~~~l~~s~~D~q~le~r~~~~~eIa~afgVPp~~lg~~~~~t~sn~eq---~~ 310 (518) T protein:vir:10 237 EQFDR---AHSGSSNTGKTMVVEEGMEPIPLQLTAVEMQFIEARQLNREEVCGVYDIAPPIVHILDRATFSNISA---QM 310 (518) T ss_pred HHHHH---HhcCccccCcceEcCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccCCCCCchhHHH---HH Confidence 11110 1111100 012223455555555667788888888899999999999998755432 22221 11 Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCCHHHHH Q lcl|Aclame:pro 396 DLTY-RTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTVEAI 474 (517) Q Consensus 396 ~~~~-~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~~~l 474 (517) ...+ .++.-....++.+|... ++... ...+.+.++.+.-+..|..+.++.+..++.+|+|+.-+++ T Consensus 311 ~~f~~~tL~P~l~~ie~~ln~~------------L~~~~-~~~~~~~fd~~~llr~D~~~r~~~~~~~~~~G~lT~NE~R 377 (518) T protein:vir:10 311 RAFYRDTMAIPIARIQSAMDKY------------VGQYW-VRKNRMKFDIDDVIQPDWEAKSESTQKMVNSGVATPNEGR 377 (518) T ss_pred HHHHHHHHHHHHHHHHHHHHHh------------hcccc-cCCceEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHH Confidence 1111 12222233333333221 11111 1234466666676778999999999999999999999966 Q ss_pred HhhCCCC---HHHHHHHH-----HHHHH--------hccccCCCCCc-------cccCCCCCCCCC Q lcl|Aclame:pro 475 QRIFKVP---KKTAEQWL-----EEIRK--------DQIELDPVTIS-------QRAQKRMFGDEE 517 (517) Q Consensus 475 ~~~~~~~---eeea~~el-----~~i~~--------E~~~~~~~~~~-------~~~~~~~~G~ee 517 (517) +. .|+. ++..++.. ..+.. .+++..+.+.+ +.+..+..+-+. T Consensus 378 ~~-~Gl~pie~~~gD~~~~~~n~~pl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (518) T protein:vir:10 378 EI-MGLPRSDDPKADELYANSALQPLGATPDGAVEGEEAPAPKRPASTPVASLDQSPPTSVPGLSP 442 (518) T ss_pred HH-hCCCCCCCCCCCeeeecccceecccccccccCCCCCCCCCCCCccccccccccccccCCCCCc Confidence 54 3543 22333221 11110 00111100000 000000000000 No 212 >protein:vir:4995 Length: 384 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:109 # MgeName: Sfi21 # Cross-refs: genbank:acc:NP_049969;genbank:gi:9632941;genbank:GeneID:1262104 Probab=96.17 E-value=0.00092 Score=37.22 Aligned_cols=364 Identities=9% Similarity=-0.014 Sum_probs=146.1 Q ss_pred hhcccchhhhccccCcCCHHHHHHHHHHHHHhcCC--CcccccccccCcccc-ccccccCh----HHHHHHHHhhhhcCC Q lcl|Aclame:pro 18 LSGQTLKSINDHEKINIDPNELARIERNLRQYEGD--YPQVEYINSQGKIQE-RDYMTLNL----RKLSADVLSGLVFNE 90 (517) Q Consensus 18 ~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~--~~~~~~~~~~~~~~~-~~~~~ln~----~~~i~~~~A~ll~~e 90 (517) |++.... ...+. .++ .++.++.+- +..+..+.. +.... +..+...- -..||+..|++ T Consensus 1 Mglf~~~--~~~~~--~~~-------~~~~~~~~~~~~~~~~~~~~-~~~v~~~~al~~~~V~~~i~~Ia~~ia~l---- 64 (384) T protein:vir:49 1 MPIFNIT--NLATE--SPP-------SNQDSFFDITDPEFLDALNG-SEWVSAETALKNSDLFSIISQLSNDLATA---- 64 (384) T ss_pred Ccccccc--ccCcc--ccc-------ccchhhccccchhhcccccC-CceechhhhhccHHHHHHHHHHHHHHhhC---- Confidence 2221111 00000 011 011111110 001111100 00000 11111111 14455555543 Q ss_pred cceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe-CCee-EEEEEcCCeEEEEEE Q lcl|Aclame:pro 91 QCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD-NGEI-EFSWALANAFYPLRS 168 (517) Q Consensus 91 ~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d-~g~~-~i~~v~a~~~~P~~~ 168 (517) + +.+.+... ..+.+.-+... ....-.+.++.+.+..|.+++.+..| .|++ .+..++|+.+-++.. T Consensus 65 ~--~~~~~~~~--------~~l~~~PN~~~---t~~~f~~~l~~~lll~Gna~~~i~r~~~g~~~~L~~l~~~~v~v~~~ 131 (384) T protein:vir:49 65 K--ITTSRKQL--------QGIVDNPSNNA---NRFNFYQSIFAQMLLGGEAFAYRWRNENGRDMKWEYLRPSQVSFNRL 131 (384) T ss_pred c--eeeecchh--------hhhhhccCCCC---CHHHHHHHHHHHhhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEc Confidence 2 33322111 01111111111 12333445566777789988888776 4554 567777877766432 Q ss_pred cCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccccCCCCcceEEcCC Q lcl|Aclame:pro 169 NSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGL 248 (517) Q Consensus 169 ~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~ 248 (517) ++++. .+|+ ++ +. +. ..|..+.+. +. T Consensus 132 ~~~~~-----------------~~y~------------------~~---~~--~~-~~~~~~~~~------~~------- 157 (384) T protein:vir:49 132 DNQNG-----------------LYYN------------------IT---FD--DP-RIPPKQHVP------QG------- 157 (384) T ss_pred CCCce-----------------EEEE------------------EE---ec--Cc-cccceeEec------Cc------- Confidence 22111 1111 00 00 00 001111110 00 Q ss_pred CcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHh-ccceeecchHHhccCCCCcccccCccCCc Q lcl|Aclame:pro 249 SRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKM-GQRTVFVSDVMLRTVPDESGMPPPQVFDP 327 (517) Q Consensus 249 ~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~-~~~~i~v~~~~l~~~~~~~~~~~~~~fd~ 327 (517) -++||+.+.++ +..+|+|.+.-+...++....+-....+-++. +++.-++ +..... ........ T Consensus 158 ---eVih~~~~~~~----~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il-----~~~~~~---~~~~~~~~ 222 (384) T protein:vir:49 158 ---DILHFRLLSVD----GGLTSVSPLMALGRELNIQKASDKLTLNALKNALNANGIL-----KIKGGG---LLDFKTKQ 222 (384) T ss_pred ---cEEEecCCCCC----CceeeccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEE-----EeCCCC---ChHHHHHH Confidence 14566543222 23569998888877776554444444445554 4444433 111100 00000000 Q ss_pred ccceeeeec------CCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHHHHHHHHHHHH Q lcl|Aclame:pro 328 DVNVYKSIR------MGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVSENDLTYRT 401 (517) Q Consensus 328 ~~~~y~~~~------~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a~~~~~~~t 401 (517) ....+.... .-+++..++.++......+..+..+...++|+...|++|..+|..+.+..|++.+.......+.. T Consensus 223 ~~~~~~~~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~~~~~~~~i~~ 302 (384) T protein:vir:49 223 SRSRQAMKQMQGGPLVLDDLEDFTPLEIKSNVAQLLSQADWTTGQFAKVYGIPESVVGGEGDKQSSLEMIYNIYFKAVSR 302 (384) T ss_pred HHHHHhcccCCccceecCCCceEEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCccccHHHHHHHHHHHHHH Confidence 000011100 00222334445555566677888888889999999999999987655555555544333222211 Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCCHHHHHHhh--C Q lcl|Aclame:pro 402 -RNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTVEAIQRI--F 478 (517) Q Consensus 402 -~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~~~l~~~--~ 478 (517) +.-+...++.+|..- + ..+.......+..........++.+|++++.++...+ . T Consensus 303 ~l~pi~~~i~~~l~~~------------l-----------~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~e~~~~l~~~ 359 (384) T protein:vir:49 303 FLRPFVSELSKKLSCE------------V-----------DADILPAVDPTGSNYIGLINSMVKTGTLAQNQGLYVLQQA 359 (384) T ss_pred HHHHHHHHHHHHhchh------------h-----------hhhhhhhhhccchHHHHHHHHHhhcCcccHHHHHHHHhhC Confidence 122222222222110 0 0000111112223333344567788999998877654 3 Q ss_pred CCCHHHHHHHHHHHHHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 479 KVPKKTAEQWLEEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 479 ~~~eeea~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) |+...|+.+. +.. .|-+|...+|| T Consensus 360 g~~~ne~r~~------~~~---------~p~~gGd~~~~ 383 (384) T protein:vir:49 360 EILPKDLPEG------ETD---------STLKGGETNEQ 383 (384) T ss_pred CCCChhHHHH------cCC---------CCCCCCCCCCC Confidence 6654544332 111 11233334444 No 213 >protein:vir:1661 Length: 378 # NCBI annotation: unknown # Family: family:all:2379 # MgeID: mge:34 # MgeName: sk1 # Cross-refs: genbank:acc:NP_044950;genbank:gi:9629657;genbank:GeneID:1261302 Probab=96.05 E-value=0.0011 Score=36.86 Aligned_cols=368 Identities=13% Similarity=0.108 Sum_probs=116.0 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCC---cccccccccCccccccccccChHH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDY---PQVEYINSQGKIQERDYMTLNLRK 77 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~---~~~~~~~~~~~~~~~~~~~ln~~~ 77 (517) ||+|.+++.+-+.... ...+.+..... ..++.... .+...-..-.+.- +..+++...+........ - T Consensus 1 Mg~f~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~---~v~~~i~~Ia~~iA~l~~~~~~~~~~~~~~~~~~-----~ 70 (378) T protein:vir:16 1 MNLFGKVVSFSRGKLN-NDTQRVTAWQN-EAVEYTSA---FVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLI-----S 70 (378) T ss_pred Cccchhhhhhhccccc-CCcceeeeccc-chhhHHHH---HHHHHHHHHHhhhhhCceeEEEEccccccccccc-----c Confidence 9999999986543222 11111110000 00100000 0000001111111 111111111100000000 0 Q ss_pred HHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeCCeeEEEE Q lcl|Aclame:pro 78 LSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDNGEIEFSW 157 (517) Q Consensus 78 ~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~g~~~i~~ 157 (517) .+-+.++.||-.+|-.. ....+| ....+.+.+-.|.+++.+.+|+....+ T Consensus 71 ~~~~~l~~lL~~~PN~~---------------~t~~~f-------------~~~~~~~lll~Gna~i~~~~d~~~g~~-- 120 (378) T protein:vir:16 71 MAGSDLDEVLNWSPKGE---------------RNSMDF-------------WRKVIKKLLRAPYVDLYAVFDDNTGEL-- 120 (378) T ss_pred cccchHHHHHhhcCCCC---------------CCHHHH-------------HHHHHHHHhhcCceEEEEEeecCCceE-- Confidence 11123333332222110 011122 223345556678888777666431111 Q ss_pred EcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccccC Q lcl|Aclame:pro 158 ALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYE 237 (517) Q Consensus 158 v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~ 237 (517) +++....+. ..|. .. --.++++-++- .. | .-++.-.-. T Consensus 121 ------~~l~~~~~~------------------~~~~------~~------diih~r~~~~~-~~----~-~s~l~~~~~ 158 (378) T protein:vir:16 121 ------LDLLFADDK------------------KEYK------PE------ELVRLTSPFYI-NE----D-TSILDNALA 158 (378) T ss_pred ------EEEEecCCe------------------eEec------cc------ceEEecCccCc-cc----h-hHHHHHHHH Confidence 111111110 0000 00 00111110000 00 0 000100000 Q ss_pred CCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhcc--ceeecchHHhccCCC Q lcl|Aclame:pro 238 GMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQ--RTVFVSDVMLRTVPD 315 (517) Q Consensus 238 ~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~--~~i~v~~~~l~~~~~ 315 (517) .+... ...| .|.+ +++.+. .++. +..+.+.+.+...|... ..+. .++.| T Consensus 159 ~i~~~-~~~~--~~~g-~l~~~~----------~l~~-~~~~~~~~~~~~~~~~~----~~~~~~g~~~v---------- 209 (378) T protein:vir:16 159 SIQTK-LEQG--KLRG-LLKINA----------FLDI-DNTQEYREKALTTIKNM----QEGSSYNGLTP---------- 209 (378) T ss_pred HHHHH-HhcC--ccce-eeEeCC----------cCCH-HHHHHHHHHHHHHHHHh----hcccccccceE---------- Confidence 00000 0001 1111 111110 0010 00111111111111110 0000 01111 Q ss_pred CcccccCccCCcccceeeeecCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHHHHHH Q lcl|Aclame:pro 316 ESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVSEN 395 (517) Q Consensus 316 ~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a~~ 395 (517) . +++..++.++.+-.+.+ +..+..+.++|+...|++|..++ + |..|... . T Consensus 210 ---------------------l-~~g~~~~~l~~~~~~~~-~~~~~~~~~~Ia~~fgVPp~~l~----g--~~~e~~~-~ 259 (378) T protein:vir:16 210 ---------------------V-DNKTEIVELKKDYSVLN-KDEIDLIKSELLTGYFMNENILL----G--TASQEQQ-I 259 (378) T ss_pred ---------------------c-CCCceEEEccCChhhhh-HHHHHHHHHHHHHHhCCCHHHhc----C--CchHHHH-H Confidence 0 12222333333322223 34455566789999999998773 1 1222211 1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCCHHHHHH Q lcl|Aclame:pro 396 DLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTVEAIQ 475 (517) Q Consensus 396 ~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~~~l~ 475 (517) +-...++.-....++.+|..-+-.=.+....+ .......+.++++.-...|..+.++.+.+++.+|+|+.-++++ T Consensus 260 ~f~~~tl~P~~~~ie~~l~~kLl~~~e~~~~~-----~~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~ 334 (378) T protein:vir:16 260 YFYNSTIIPLLIQLEKELTYKLISTNRRRVVK-----GNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLV 334 (378) T ss_pred HHHHHHHHHHHHHHHHHHHhhcCChhhhhhhh-----hcccccceeeccchhhhcCHHHHHHHHHHHHhCCCcCHHHHHH Confidence 11112222233333333322110000000000 0011234667778888889999999999999999999999765 Q ss_pred hhCCCCHH-HHHHHHHHHHHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 476 RIFKVPKK-TAEQWLEEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 476 ~~~~~~ee-ea~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) .. |+..- ..++-+-. .--...+....++....+..+++| T Consensus 335 ~~-g~~p~~ggD~~~~~--~n~~~~~~~~~~~~~~~~~~~~~e 374 (378) T protein:vir:16 335 KM-GEQPIEGGDVYIAN--LNAVAVKNLSDLQGSRKDVTSTDE 374 (378) T ss_pred Hh-CCCCCCCCCeEeec--cccccccchhhhcCccCCCCCCCC Confidence 43 54321 11111100 000000111111111111112222 No 214 >protein:vir:100691 Length: 535 # NCBI annotation: hypothetical protein # Family: family:all:2446 # MgeID: mge:1633 # MgeName: LP65 # Cross-refs: genbank:acc:YP_164747;genbank:gi:56693160;genbank:GeneID:3197324 Probab=96.01 E-value=0.0011 Score=36.73 Aligned_cols=433 Identities=11% Similarity=0.084 Sum_probs=166.8 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHH--------HHHHhcCC------CcccccccccCccc Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIER--------NLRQYEGD------YPQVEYINSQGKIQ 66 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~--------~~~~Y~g~------~~~~~~~~~~~~~~ 66 (517) |-++.-+++.|. +..|... ..+.++.-..++|++ .+..+-|- +..++-+....... T Consensus 1 ~~~~~~~~~~~~-----~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 70 (535) T protein:vir:10 1 MAILKDLRNAFS-----LSNKKST-----SYIELGDYDKDIVNKAIRPGRASARDTVDGIDIADGNVAGQYSVASISDVL 70 (535) T ss_pred ChhhHHHHHHHH-----hhhhhhh-----hhHHHhhhhHHHHHhhhhhhhhhhhccccccccccCCcccccccCcccccc Confidence 999988888763 2222211 112223222233222 12233221 10000000000000 Q ss_pred -----cccccccChHHHHHHHHhhhhc---------C--CcceeEecCcccccccccchhHHHHHHHHHHhh--h----- Q lcl|Aclame:pro 67 -----ERDYMTLNLRKLSADVLSGLVF---------N--EQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQH--N----- 123 (517) Q Consensus 67 -----~~~~~~ln~~~~i~~~~A~ll~---------~--e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~--n----- 123 (517) .+.....++.+.+.+..++.+. . -...+.+-+... ............|..+|.. | T Consensus 71 ~~~~l~~~~~~~~~~~~~i~t~~~~va~~~~i~~~s~~~~~~~i~l~~~~~--~~~~~~~~~~~~l~~lL~~~PN~~~~~ 148 (535) T protein:vir:10 71 STKKLLKAYADNDIVQAIIRTRTNQVLTYSNPSRYNRNGVGFKVELKDATK--VMSKAQIKRAHEIEDFIYNTGSEYYEW 148 (535) T ss_pred CHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHhcccCcceeEEEeccC--CCcchhhhhhhHHHHHHHhCCCCCCCh Confidence 0000001112233333332221 0 011121111100 0000011112223333321 1 Q ss_pred -hHHH-HHHHHHHHHHhhCCE-EEEEEEe-CCee-EEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEE Q lcl|Aclame:pro 124 -KFIK-NLSDYLEPTFALGGL-TVRPYVD-NGEI-EFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEF 198 (517) Q Consensus 124 -~f~~-~~~~~~~~a~~~G~~-~~k~~~d-~g~~-~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~ 198 (517) .|+. .+..++.+++.+|+. ++.+..+ .|++ .+..++|+.+.+.. +..+.. ...+|. T Consensus 149 ~~~~~~~~~~lv~d~l~~~g~ay~~i~r~~~G~~~~L~~l~p~~V~v~~-d~~~~~--------------~~~~~~---- 209 (535) T protein:vir:10 149 RDTFPRLLTKIINDMYVQDQINIERIFKNDSNELDHFNAVDASKVVISY-SPRSKD--------------QPRKFE---- 209 (535) T ss_pred hHHHHHHHHHHHHHHHhhCCceEEEEEECCCCcEEEEEEeCCceeEEEE-cCcccc--------------CceEEE---- Confidence 2333 445566677777765 5555555 4554 47778888877632 211110 001110 Q ss_pred EeecceeeccceEEEEEEEeecCCccccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhh Q lcl|Aclame:pro 199 HEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNS 278 (517) Q Consensus 199 h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~ 278 (517) + |..+.. +..++ +.+ ++||+.+ ++......++|+|.+.-+ T Consensus 210 ~------------------~~~~~~---~~~~~--------~~e----------iih~~~~-~~~~~~~~~~G~Spi~~~ 249 (535) T protein:vir:10 210 Q------------------FVSETK---SVKFS--------ERN----------LTFINYW-NLSDTDRRGYGYSPVEAS 249 (535) T ss_pred E------------------EecCce---eEEEC--------ccc----------EEEEecc-CCCCcccccccccHHHHH Confidence 0 000000 00000 001 2344421 111223456899999888 Q ss_pred HHHHHHHHHHHHHHHHHHHhcc-ceeecchHHhccCCCCcc-ccc--CccCCccc-ceeeeec-------CCCCCCcceE Q lcl|Aclame:pro 279 VSTLKKINDTYDQFWWEIKMGQ-RTVFVSDVMLRTVPDESG-MPP--PQVFDPDV-NVYKSIR-------MGTDEEFVKD 346 (517) Q Consensus 279 ~~lid~lD~~~s~~~~e~~~~~-~~i~v~~~~l~~~~~~~~-~~~--~~~fd~~~-~~y~~~~-------~~~~~~~v~~ 346 (517) ...|......-.-..+-|+.|. +.-+ |........ ... ...|.... ..|.+.. ..+++-.++. T Consensus 250 ~~~i~~~~aa~~~~~~~f~ng~~p~gi-----L~~~~~~~~~ls~e~~e~lk~~~~~~~~G~~nag~~~vl~~~g~~~~~ 324 (535) T protein:vir:10 250 IPLIRAIYDTEQFNARFFSQGGTTRGI-----LVIDQDGDAQANQMMLAGIRRQWTSQGSGLGGAWKIPILAAKDAKFVN 324 (535) T ss_pred HHHHHHHHHHHHHHHHHHhccCCccEE-----EEecCCCCcccCHHHHHHHHHHHHHHhcCcccccccccccCCCceEEe Confidence 8877776544444444456554 3222 221111100 000 00010000 0111111 1112223444 Q ss_pred EecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccch-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 347 VTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKT-A-TEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELA 424 (517) Q Consensus 347 ~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~T-A-tei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~ 424 (517) ++......++.+..+...+.|+...|++|..+|+...+.-+ . +.....+..+.. ...+..++.+|.-++..|-... T Consensus 325 l~~~~~D~qfle~~~~~~~eIa~afgVPp~~lG~~~~at~sn~~~~~~~~~~s~~E--~~~~~~~~~~L~P~l~~ie~~l 402 (535) T protein:vir:10 325 MTQNSRDMEFDKFLNFMIYDTAAIFQMQPEEINFPNNGGSTGKSGTKSVNEGSTAK--AKLESSKDKGLTPLLSFIEQVI 402 (535) T ss_pred cCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccCcccccchhhhhhhhhhhHH--HHHHHHHHHHHHHHHHHHHHHH Confidence 55555667788888888999999999999999976543211 1 111111111111 1123344445555555444332 Q ss_pred hhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCCHHHHHHhhCCCCHHH-HHH---HHH--HHHHhc-- Q lcl|Aclame:pro 425 KTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTVEAIQRIFKVPKKT-AEQ---WLE--EIRKDQ-- 496 (517) Q Consensus 425 ~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~~~l~~~~~~~eee-a~~---el~--~i~~E~-- 496 (517) +. .++.. ....+.++|+.....|..+..+ ..++..+|+|+.-+++.+ .|+..-+ .+. .++ .....+ T Consensus 403 n~-~Ll~~---~~~~~~f~f~~l~~~d~~~r~~-~~~~~~~g~lT~NE~R~~-~gl~piegGD~~~~~~~~~~~~~~~~~ 476 (535) T protein:vir:10 403 ND-KIMRY---VDTDYRFSFTLGDAQDKLQEEQ-VWKLKLANGYFINEYRKD-HGLKTVDGLDVPGFIGSAENFINATGF 476 (535) T ss_pred hh-hcccc---cCCeEEEEeccccccCHHHHHH-HHHHHHcCCCCHHHHHHH-hCCCCCCCccccccccchhhccccccc Confidence 21 12211 1235788998877778666554 445566788999986654 4543210 110 000 000000 Q ss_pred -cccCCC--------CCccccCCC-------CCCCCC Q lcl|Aclame:pro 497 -IELDPV--------TISQRAQKR-------MFGDEE 517 (517) Q Consensus 497 -~~~~~~--------~~~~~~~~~-------~~G~ee 517 (517) ....|. ...+++++. ..|.++ T Consensus 477 ~~~~~p~~~~~~~~~~~~~~~q~~~~~~~~~~~g~~~ 513 (535) T protein:vir:10 477 GQPNVPDSSDDSGSTLGERERQERIQHSKDYEKGKDD 513 (535) T ss_pred ccccCCCCCCCccccCCccccCcccccccccccCCCC Confidence 000000 000111111 011122 No 215 >protein:vir:98396 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1581 # MgeName: phiPVL(108) # Cross-refs: genbank:acc:YP_918929;genbank:gi:119443691;genbank:GeneID:4594558 Probab=95.78 E-value=0.0015 Score=36.13 Aligned_cols=371 Identities=12% Similarity=0.081 Sum_probs=154.1 Q ss_pred HHHhcCCCcccccccc-----------------------------------------cCccccccccccChH------HH Q lcl|Aclame:pro 46 LRQYEGDYPQVEYINS-----------------------------------------QGKIQERDYMTLNLR------KL 78 (517) Q Consensus 46 ~~~Y~g~~~~~~~~~~-----------------------------------------~~~~~~~~~~~ln~~------~~ 78 (517) .+||.-+...+.++.+ .+.... ....+..+ .. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~e~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~al~~~~V~acv~~ 79 (441) T protein:vir:98 1 MHWYNTDCYFVDFKSRKQSRKELVVVGIFYKNEKRDLQYNEDDLQMMVQTLPGFQGTKLRQYK-DIEAIRHSDIFTAVMM 79 (441) T ss_pred CceecCccceeccccccchhhhhhccccccccccccccCCCcchHHHHHHhhcccccCccccc-hhhhhccHHHHHHHHH Confidence 1222221111111000 000000 00011111 45 Q ss_pred HHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhh---hHHHHHHHHHHHHHhhCCEEEEEEEeC-Cee- Q lcl|Aclame:pro 79 SADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHN---KFIKNLSDYLEPTFALGGLTVRPYVDN-GEI- 153 (517) Q Consensus 79 i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n---~f~~~~~~~~~~a~~~G~~~~k~~~d~-g~~- 153 (517) ||+..|+| |..+.-.+. . .....+...|.. .-| .-..-++.++.+.+..|.+++.+..+. |++ T Consensus 80 Ia~~iA~l----pl~~~~~~~--~----~~~~~~~~lL~~--~PN~~~t~~~f~~~l~~~lll~Gnay~~i~r~~~G~~~ 147 (441) T protein:vir:98 80 IASDLARM----PIRVTVNGQ--I----NYSDRIVNLLNT--RPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPM 147 (441) T ss_pred HHHhhccC----ceEEecCCc--c----cccchHHHHHhc--ccccCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEE Confidence 55555543 333321111 0 011112222211 011 111223445666777899888877763 553 Q ss_pred EEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccc Q lcl|Aclame:pro 154 EFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLE 233 (517) Q Consensus 154 ~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~ 233 (517) .+..++|+.+.+.. +.++.. +|.. .. .. ..+. .+. ..|. T Consensus 148 ~L~~i~~~~v~v~~-~~~g~~-----------------~~~~-~~--~~----~~~~-~~~-~~~~-------------- 186 (441) T protein:vir:98 148 NLTFRKTSEIELKL-DARGRL-----------------YYFH-QR--ID----SNGN-NIE-RNVK-------------- 186 (441) T ss_pred EEEEEcCceeEEEE-CCCCcE-----------------EEEE-EE--ec----cCcc-eee-EEEc-------------- Confidence 57788888887743 332221 1110 00 00 0000 000 0010 Q ss_pred cccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHH-HHhc-cceeec--chHH Q lcl|Aclame:pro 234 ELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWE-IKMG-QRTVFV--SDVM 309 (517) Q Consensus 234 ~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e-~~~~-~~~i~v--~~~~ 309 (517) +.+ +.||+.+.. +...|+|.+.-+...|+.. ....++... |+.| ++.-++ |..+ T Consensus 187 ------~~d----------viHir~~~~-----dg~~G~spi~~~~~~i~~~-~a~~~~~~~~f~ng~~~~gil~~~~~~ 244 (441) T protein:vir:98 187 ------FED----------MLDIKFYSL-----DGINGLSLLDTLSRTIESD-NNGKDFLNNFLRNGTHAGGILKMKGVL 244 (441) T ss_pred ------ccc----------EEEeccCCC-----CCccccCHHHHHHHHHHHH-HHHHHHHHHHHhccCCCcEEEEeCCCC Confidence 001 234543211 2346889888777777544 344444444 4554 333332 2211 Q ss_pred hccCCCCcccccCccCCcccceeeeecC------CCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCC Q lcl|Aclame:pro 310 LRTVPDESGMPPPQVFDPDVNVYKSIRM------GTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGR 383 (517) Q Consensus 310 l~~~~~~~~~~~~~~fd~~~~~y~~~~~------~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~ 383 (517) .. +..-......|. ..|.+... =+++-.++.++....+.++.+......++|+..-|++|..+|.+.. T Consensus 245 ~~---~e~~~~~~~~~~---~~~~G~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~r~~~~~~Ia~~fgVPp~~lg~~~~ 318 (441) T protein:vir:98 245 DN---KKARDRAREEFH---KSFSGTKQAGKVVVLDESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIETA 318 (441) T ss_pred CC---HHHHHHHHHHHH---HHhcCccccCcceecCCCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCCCC Confidence 10 000000001111 11221110 0233345555556666778888888888999999999999986443 Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHH Q lcl|Aclame:pro 384 SMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAK 463 (517) Q Consensus 384 ~~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~ 463 (517) +. +.++....+ ..++.-+...++.+|... ++.. .....+.++.+.-+..|..+.++...+++ T Consensus 319 ~~-s~~q~~~~y---~~tl~P~~~~ie~~ln~~------------L~~~--~~~~~~~fd~~~llr~d~~~~~~~~~~~~ 380 (441) T protein:vir:98 319 NM-SITDANLDY---LSTLKPYITCVCAELNFK------------FNDE--YVNREFKFDTTEIRVVDEKTQAEIDKINI 380 (441) T ss_pred Cc-cHHHHHHHH---HHHHHHHHHHHHHHHHhh------------cccc--ccCceEEEechhhhccCHHHHHHHHHHHH Confidence 22 222222111 123322333333333221 2111 12345667766767789999999999999 Q ss_pred hcCCCCHHHHHHhhCCCCHHH-HHHHHHHH-----HHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 464 TFGFIPTVEAIQRIFKVPKKT-AEQWLEEI-----RKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 464 ~~G~~S~~~~l~~~~~~~eee-a~~el~~i-----~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) .+|+|+.-+++. ..|+..-+ -++-+-.+ ..+....-+..-........-|+|| T Consensus 381 ~~G~~T~NE~R~-~~gl~pi~gGd~~~~~~~~n~~~~~~~~~~q~~~~~~~~~~~kgGe~ 439 (441) T protein:vir:98 381 DSGKMNIDEIRQ-RDGLAPIPGGNGSIHRVDLNHVNIELVDEYQMNKSRATDKKLKGGEE 439 (441) T ss_pred hCCCcCHHHHHH-HhCCCCCCCCCcceEeecccccccccccccccccccccccccCCCCC Confidence 999999999665 44553210 11000000 0011000000000000112234444 No 216 >protein:vir:1082 Length: 359 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:21 # MgeName: bIL309 # Cross-refs: genbank:acc:NP_076736;genbank:gi:13095846;genbank:GeneID:920394 Probab=95.72 E-value=0.0016 Score=35.97 Aligned_cols=342 Identities=13% Similarity=0.075 Sum_probs=135.7 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccChH---- Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLR---- 76 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~---- 76 (517) ||||...++ | .. .. +.. -|..+..+- .+... ..... ...+..+ T Consensus 1 M~~~~~f~~---r-~~---------~~-------~~~------~~~~~~~~~-~~~~~-----~~v~~-~~al~~~av~~ 47 (359) T protein:vir:10 1 MSILNPFER---R-SS---------IT-------PNN------YYPFMVQNG-SIVPN-----SLVDA-TEALKNSDLYA 47 (359) T ss_pred Ccccchhhc---c-cc---------CC-------CCc------chhhhhccc-cccCC-----cccCH-HHhhcchHHHH Confidence 999864332 1 00 00 110 011111111 11000 00000 0011111 Q ss_pred --HHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe-CCee Q lcl|Aclame:pro 77 --KLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD-NGEI 153 (517) Q Consensus 77 --~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d-~g~~ 153 (517) ..||+..|++ | +. +++. ...+...=+.......|.+ .++.+.+-.|.+++.+..+ +|.+ T Consensus 48 cv~~ia~~ia~~----p--~~-~~~~--------~~~L~~~PN~~~t~~~f~~---~~~~~lll~Gnay~~i~r~~~g~~ 109 (359) T protein:vir:10 48 VTSLISSDIAGT----R--FI-GNQV--------FTSVLNNPSHLTNAFSFWQ---TAILNLLLNGNVFLAILKGDNSLM 109 (359) T ss_pred HHHHHHHhhhcC----c--cc-cchH--------HHHHhhcccccCCHHHHHH---HHHHhccccCceEEEEEECCCCeE Confidence 2444444432 1 10 1100 0000000011111112222 2344555568887777665 4543 Q ss_pred -EEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCccccc Q lcl|Aclame:pro 154 -EFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPL 232 (517) Q Consensus 154 -~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l 232 (517) .+..++|+.+-+. .+++. ..|+ +. ...+. .+..++ T Consensus 110 ~~l~~l~~~~v~i~-~~~~~------------------~~y~------------------~~----~~~~~--~~~~~~- 145 (359) T protein:vir:10 110 KELRLIPSNAITID-LTDDT------------------LTYE------------------VN----QFDDY--PSAKYN- 145 (359) T ss_pred EEEEEeCCceEEEE-EcCCe------------------EEEE------------------EE----ecCCc--eEEEEc- Confidence 4566677765542 12211 1111 00 00000 000000 Q ss_pred ccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhcc-ceeec--chHH Q lcl|Aclame:pro 233 EELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQ-RTVFV--SDVM 309 (517) Q Consensus 233 ~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~-~~i~v--~~~~ 309 (517) +.+ +.||+.+..|....+...|+|.+.-+...+.....+-.-..+-|+.|- +.-++ |... T Consensus 146 -------~~e----------vih~~~~~~~~~~~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~ 208 (359) T protein:vir:10 146 -------ASE----------MIHVKIMAYGVDTLHNLVGHSPLESLTSEIGQQKEANRLSLSTLKGALNPTSVVKVPQGT 208 (359) T ss_pred -------ccc----------eEEeccCCCCCCccCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCC Confidence 001 335554433332223346999888777777766555444455566543 33332 2211 Q ss_pred hccCCCCcccccCccCCcccceeeeecC-----CCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCc Q lcl|Aclame:pro 310 LRTVPDESGMPPPQVFDPDVNVYKSIRM-----GTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRS 384 (517) Q Consensus 310 l~~~~~~~~~~~~~~fd~~~~~y~~~~~-----~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~ 384 (517) +... .-......|+ +.|.+-+. =+++-.++.++..-...++.+..+...+.|+...|++|..++..+.. T Consensus 209 l~~e---~~~~~~~~~~---~~~~~~n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~ 282 (359) T protein:vir:10 209 LSSE---AKDSIRKEFE---KANGGNNSGRVMVLDQSADFSTVSINADVANYLNSMNWGRTQIAKAFGVSDSYLNGTGDQ 282 (359) T ss_pred CCHH---HHHHHHHHHH---HHhCccccCCceecCCCcceeeecCCHHHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCcc Confidence 1100 0000111110 01111000 02222344444444455677888888889999999999999865444 Q ss_pred cchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHH Q lcl|Aclame:pro 385 MKTATEIVSENDLTY-RTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAK 463 (517) Q Consensus 385 ~~TAtei~a~~~~~~-~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~ 463 (517) ..|...+.......+ .++..+...+..+|..- +.++.+..+..|.+.......+++ T Consensus 283 ~~~~~~~e~~~~~~l~~~l~p~~~~l~~~l~~~-----------------------~~~~~~~~~~~d~~~~~~~~~~~~ 339 (359) T protein:vir:10 283 QSSLDQIKDLYVNALNRFIEPLISELRIKCDSS-----------------------IGVDMSPITDYSNSVFKADILNWV 339 (359) T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----------------------hcccchhhhhcCHHHHHHHHHHHH Confidence 445555544433222 22222222222222110 011111112223344556667788 Q ss_pred hcCCCCHHHHHHhhCCCCHHHHHHHH Q lcl|Aclame:pro 464 TFGFIPTVEAIQRIFKVPKKTAEQWL 489 (517) Q Consensus 464 ~~G~~S~~~~l~~~~~~~eeea~~el 489 (517) .+|+|+.-++++.+ |...- + T Consensus 340 ~~G~~t~NE~R~~l-~~~pv-----~ 359 (359) T protein:vir:10 340 KEGIIEPTEAKTLL-ESKGI-----I 359 (359) T ss_pred hCCCcCHHHHHHHh-CCCCC-----C Confidence 88999888876543 32210 0 No 217 >protein:vir:100598 Length: 516 # NCBI annotation: gp20 head portal vertex protein # Family: family:all:1036 # MgeID: mge:1488 # MgeName: 25 # Cross-refs: genbank:acc:YP_656382;genbank:gi:109290133;genbank:GeneID:4156576 Probab=95.43 E-value=0.0021 Score=35.27 Aligned_cols=448 Identities=14% Similarity=0.140 Sum_probs=195.7 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHH----HHHHhcCCCcccccccccCccccc-----ccc Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIER----NLRQYEGDYPQVEYINSQGKIQER-----DYM 71 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~----~~~~Y~g~~~~~~~~~~~~~~~~~-----~~~ 71 (517) |+|.+-.+-|.+.-..... +.++ .....++.|...-.+..- .-.-|.|-.. ++...++..+.. ... T Consensus 1 ~~~~~lf~f~~~~d~~~~~-~~~~--~~~~s~~~p~~~DGa~~i~~~~~~~~~~g~~~--~~~d~~~~~~~~~~LI~~YR 75 (516) T protein:vir:10 1 MKFLDLFKFWDRVDQNEYD-ERLK--QGHESIATPKKDDGATEIEAREGESSYNALMQ--QFFGIDNNISGTKDLINTYR 75 (516) T ss_pred CCchHhcccccchhhHHHH-hhhc--CCCCcccCCCCccCceeeecCcccccccceee--eeecccCccccHHHHHHHHH Confidence 8887776665542221111 1111 001111111111000000 0000111000 001111111100 001 Q ss_pred cc-ChH---HHHHHHHhhhhcC----CcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEE Q lcl|Aclame:pro 72 TL-NLR---KLSADVLSGLVFN----EQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLT 143 (517) Q Consensus 72 ~l-n~~---~~i~~~~A~ll~~----e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~ 143 (517) ++ .-| ..|-.-.-+.++. +++++.+++.. ..+...++-.+..+.++.--+|.++..+....+.+.|..+ T Consensus 76 ~ma~~pEvd~Av~eIvneaiv~d~~~~pV~l~l~~~e---~s~sik~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~ 152 (516) T protein:vir:10 76 QLTNNPEVERAVANIVNEAVVYEKGHKVVSLDLDDTE---FSSSIKDKILEEFDEICRLLDASRKLDTLFRRWYIDSRIF 152 (516) T ss_pred HhhhccchhHHHHHhhcceeEecCCCceEEEEecccc---cchHHHHHHHHHHHHHHHHhccchhhhHHHHhhhhcceEE Confidence 11 111 1111111122221 23444444332 1222334455667777777789999999999999999999 Q ss_pred EEEEEeC---CeeEEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeec Q lcl|Aclame:pro 144 VRPYVDN---GEIEFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKS 220 (517) Q Consensus 144 ~k~~~d~---g~~~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~ 220 (517) ||-++|+ |=..+..++|.++.++..--.....++.+ .++-. |+..+.. +...|-+.-..|.. T Consensus 153 fhKiid~~k~GI~elr~lDPr~i~~vR~i~~~~~~~~~v------~~~~~------e~~~Y~~---~~~~~~~~g~~~~~ 217 (516) T protein:vir:10 153 FHKIMPNPKEGIVELRRLDPRHVEYYREIVTSDVGGTSV------VKGYR------EFFVYTT---GNEGYAYNGRLFEP 217 (516) T ss_pred EEEEecCcccceeeeeeeCCcceeeEEeeecccCcchhh------hhcee------eeeeeec---CccceeccccccCC Confidence 9988985 44568889999887753311000001000 00111 1111100 00111111111111 Q ss_pred CCccccCcccccccccCCCCcceEE-cCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHH--- Q lcl|Aclame:pro 221 DNEGEIGKRIPLEELYEGMQEKTYI-QGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEI--- 296 (517) Q Consensus 221 ~~~~~lG~~v~l~~~~~~l~~~~~~-~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~--- 296 (517) ++ +..+|-+.+ ++. .|+- +.....=+|-+..|.-.+-.| +..-..+-.+ T Consensus 218 ~~----~ikI~~daI-------~y~hSGl~---------------d~~~~~i~syLhkAiKp~NQL-km~EDAlVIYRit 270 (516) T protein:vir:10 218 NT----RIKIPRSAI-------VYAHSGLQ---------------DCSDRGIVGYLHNAVKPANQL-KLLEDALVIYRIT 270 (516) T ss_pred CC----ceecchhhe-------eeeecCcc---------------cCCCCceeceehhhhHhHHhh-HHHHhhHHHHhhh Confidence 00 111111110 011 1211 111111134444444433333 2222333333 Q ss_pred Hhccceeec-c---------hHHhcc---------CCCCcccccCccCCcccceeeeecC------CCCCCc--ceEEec Q lcl|Aclame:pro 297 KMGQRTVFV-S---------DVMLRT---------VPDESGMPPPQVFDPDVNVYKSIRM------GTDEEF--VKDVTH 349 (517) Q Consensus 297 ~~~~~~i~v-~---------~~~l~~---------~~~~~~~~~~~~fd~~~~~y~~~~~------~~~~~~--v~~~~~ 349 (517) |.-.+|||- + +.+|+. .-+...+. -.|.+.++++.- -+++.| |+++.. T Consensus 271 RAPeRRvFYIDVGnLPk~KAeqYl~~iM~k~KNklvYDa~TGe-----v~ddrk~msMlEDyWLpRReGgrgTEItTLpG 345 (516) T protein:vir:10 271 RAPERRVFYIDVGNMPNRKATEYVNGIMQSLKNRVVYDSNTGT-----VKNQKRNLSMTEDYWLMRRDGKSVTEVTSLPG 345 (516) T ss_pred ccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEEeCCCCe-----eccchhhhhhHhhhcccccCCCcccceeeccc Confidence 455567753 1 111111 00111111 123334444321 133333 444432 Q ss_pred ccChHHHHHHHHHHHHHHHHHhCCCccccccCCCc-c--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh Q lcl|Aclame:pro 350 DIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRS-M--KTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKT 426 (517) Q Consensus 350 dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~-~--~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~ 426 (517) . .--.-.+.++-+.+.+....+.+.+-+..++++ . .-++||.-.+-....-+.+++..|..-+.++++.=|-|- T Consensus 346 g-qnlgem~DV~YF~kkLy~aLnVP~SRl~~e~~~~~~~Gr~~EItRDEiKF~KFI~rLR~rFs~lF~~~L~~qLilK-- 422 (516) T protein:vir:10 346 A-QTMGEMDDVRWFNKKLYEALRIPLSRMPRDDGGMVIGGQDMAITRDELDFRKFIVQLQHNFEEIFLDPLKTNLIYK-- 422 (516) T ss_pred c-CCcChHHHHHHHHHHHHHHhCCCcccccCCCCceeeccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-- Confidence 2 212233445566677888888888877755442 2 446777666655666777788888888888877655332 Q ss_pred hhccCCCCCCc--cceEEEeCCCccCCHHHHHHHHHHH---------HhcCCCCHHHHHHhhCCCCHHHHHHHHHHHHHh Q lcl|Aclame:pro 427 YKLFGGEIPSA--EHIGVDFDDGVFQDRSALLRFYGQA---------KTFGFIPTVEAIQRIFKVPKKTAEQWLEEIRKD 495 (517) Q Consensus 427 ~~~~~~~~~~~--~~v~i~f~d~i~~d~~~~~~~~~~~---------~~~G~~S~~~~l~~~~~~~eeea~~el~~i~~E 495 (517) +.+....+.. ..|.++|...---.+..+++.+.+- .-+...|.+...++...+||+|.+++.+.|++| T Consensus 423 -gIit~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~s~~yi~k~ILr~tDeei~~~~k~I~~E 501 (516) T protein:vir:10 423 -KIILESEWEEQINNIKVNFHQDSYYTELKDIETLRQRVDALSQIEPYVGKYVSHDYVMKNILQMTDEQIAQEEKQIEKE 501 (516) T ss_pred -CCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHhcCCHhHHHHHHHHHHHh Confidence 1222222222 2467777655444444444433221 123468888877788899999999999999998 Q ss_pred cccc---CCCCCccc Q lcl|Aclame:pro 496 QIEL---DPVTISQR 507 (517) Q Consensus 496 ~~~~---~~~~~~~~ 507 (517) ..+. +|.....+ T Consensus 502 ~~~~~~~~p~~e~~f 516 (516) T protein:vir:10 502 ANVKRFQNPENEDDF 516 (516) T ss_pred hhCCCCCCCCccccC Confidence 7542 22111111 No 218 >protein:vir:80211 Length: 514 # NCBI annotation: putative head-tail connector protein # Family: family:all:481 # MgeID: mge:1879 # MgeName: LKA1 # Cross-refs: genbank:acc:YP_001522882;genbank:gi:158345175;genbank:GeneID:5687474 Probab=95.41 E-value=0.0021 Score=35.23 Aligned_cols=441 Identities=11% Similarity=0.031 Sum_probs=171.3 Q ss_pred HHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccc--cccCccccccccccChHHHHHHHHhhhhc Q lcl|Aclame:pro 11 FKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYI--NSQGKIQERDYMTLNLRKLSADVLSGLVF 88 (517) Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~--~~~~~~~~~~~~~ln~~~~i~~~~A~ll~ 88 (517) |+.-...+. .+.. -..-...|+.++.=..|.+-.. ...+...+..+.-=..+...++.+|+-|. T Consensus 1 m~~~~~~l~-------~k~~-------R~~~e~~w~e~a~~~lP~~~~~~~~~~~~~~~~~~~~dstg~~a~~~LAa~l~ 66 (514) T protein:vir:80 1 MRQQASAMW-------AEYR-------DSTAIRKAEDFAKFTIASLMVDPLDKTHQAEVVEYDFQSAGAFLVNNLTAKLA 66 (514) T ss_pred CccchHHHH-------HHhh-------cchHHHHHHHHHHHhcccccCCCCCCcccccccccccchhHHHHHHHHHHHHH Confidence 111111100 0000 0112455666554333322110 11111111111111233444455554433 Q ss_pred CCc--c-----eeEecCccccc---------ccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeCCe Q lcl|Aclame:pro 89 NEQ--C-----EVYVSDAKDEE---------KKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDNGE 152 (517) Q Consensus 89 ~e~--~-----~i~~~~~~~~~---------~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~g~ 152 (517) +-. | ++.+++..... ..+...+...+.+...+..++|...+.++..+..++|.+.+ |.+++. T Consensus 67 ~~ltpp~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l--~~~~~~ 144 (514) T protein:vir:80 67 LTLFPPGRPSFQIELDDTLQELAAANGIDQSELHSRTADLERRATRRLFVNASLSKLHRILKLLVVTGNALF--YREPGT 144 (514) T ss_pred hhhcCCCCcccccccCchhhhhccccchhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCeEEE--EEecCC Confidence 321 1 13333211000 01111222333455667788999999999999999998764 456655 Q ss_pred eEEEEEcCCeEEEEEEcCCceEEEEEEEEEEEE-------------------ecCCcEEEEEEEEEeecceeeccceEEE Q lcl|Aclame:pro 153 IEFSWALANAFYPLRSNSNGISEGVMKSVTTKV-------------------IGNKTVYYTLLEFHEWEKTEEGESLYVI 213 (517) Q Consensus 153 ~~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~-------------------~~~~~~~yt~lE~h~~~~~~~~~~~y~I 213 (517) ..+..++-.+++ +..|..|....+|....... ..+.-.+|+++++..- ..+.+ T Consensus 145 ~~~~~~pl~~y~-v~~d~~G~v~~i~rr~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~v~~~v~~~~~-----~~~~~-- 216 (514) T protein:vir:80 145 GKMLVWTMQSYT-VRRTSHGDPAVVVLRQQMPFRELTPEIQADAQAKQIAKRDSDKCDLYTVIEWQPT-----PNGKR-- 216 (514) T ss_pred CcEEEEEcCeEE-EeeCCCcCeEEEEeeeeecHHHhhhhhhhhhhhhhccCCCCCceEEEEEEEeecC-----CCCeE-- Confidence 556777877766 45565555544443221110 0011123444433210 01111 Q ss_pred EEEEeecCCccccCcccccccccCCCCcceEEcCC--CcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHH Q lcl|Aclame:pro 214 TNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGL--SRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQ 291 (517) Q Consensus 214 ~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~--~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~ 291 (517) +.+|..-+. ..+ ++ ..++ ..-||+.+ -.+...++.||+|--..+.+-++.|+..--. T Consensus 217 -~sv~~e~~g----~~i-~~-----------es~y~~~e~P~i~~----Rw~~~~ge~YGrgp~~~al~D~k~L~~l~~~ 275 (514) T protein:vir:80 217 -CAVWHELEG----KRV-GP-----------ESSYPAHLCPYVPV----AWNVPDGEHYGRGYVEEYSGDFARLSILSER 275 (514) T ss_pred -EEEEEeccc----eee-cc-----------cCccccccCCeeee----eeEecCCCCcccchHHHHHHHHHHHHHHHHH Confidence 112221111 111 10 0111 11223333 3555668899999999999999999865444 Q ss_pred HHHH-HHhccceeecchHHhccCCCCcccccCccCCcccceeeeecCCCCCCcceEEecc--cChHHHHHHHHHHHHHHH Q lcl|Aclame:pro 292 FWWE-IKMGQRTVFVSDVMLRTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHD--IRTEQYKEAINQALRTLE 368 (517) Q Consensus 292 ~~~e-~~~~~~~i~v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~d--ir~e~~~~~l~~~l~~i~ 368 (517) ...- ....++...|+++....-.+ ........+. .+. ...+..++.. -....-...++.+.+.|. T Consensus 276 ~l~~~~~a~~~~~~v~~~g~~~~~~--------l~~~~~g~~v--~g~--~~~v~~~~~~~~~d~~~~~~~i~~~~~rI~ 343 (514) T protein:vir:80 276 LGLYEFEALSLLNLVDEAKGGAVDD--------YRDAETGDFV--PGQ--VGSVASYERGDYNKIAQASASVESIVMRLN 343 (514) T ss_pred HHHHHHHhcCCCceeCcccccchhh--------hcccCCceee--cCC--CccceeeecCcccchHHHHHHHHHHHHHHH Confidence 4333 35566666665433211000 0000001111 121 2223334332 123333344555444443 Q ss_pred HHhCCCccccccCCCccchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhh--hccCCCCCCccceEEEeC Q lcl|Aclame:pro 369 MELKLSVGTFSFDGRSMKTATEIVSENDLTYRTRNDHVYE-VEQFIKGLVISVLELAKTY--KLFGGEIPSAEHIGVDFD 445 (517) Q Consensus 369 ~~~g~s~~~~~~~~~~~~TAtei~a~~~~~~~t~~~~~~~-~~~al~~li~~il~~~~~~--~~~~~~~~~~~~v~i~f~ 445 (517) ...=+. ... ......|||||....+...+...-.-.. -...|.-|+.-.+.++.-. +..-..+.+. +.+++- T Consensus 344 ~aFml~-~~~--rd~~rvTAtEV~~r~~E~~~~LGpv~~rl~~Ell~Pli~r~~~il~r~~~g~lP~~p~~l--~~~~~v 418 (514) T protein:vir:80 344 RAFMYT-GQV--RDAERVTVEEIRTVAEEAENLLGGVYSLLAETLQAPLAYLTMYEASRGNGGMLLGIAQGV--YRPSII 418 (514) T ss_pred HHHhhh-ccC--CCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchh--hcceee Confidence 321111 111 1223469999999998888877653222 2334444555444443211 1111111122 333332 Q ss_pred CCc-cCCHHHHHH---HHHHHHhc--CC-------CCHHHHHH---hhCCCC-------HHHHHHHHHHHHH---hccc- Q lcl|Aclame:pro 446 DGV-FQDRSALLR---FYGQAKTF--GF-------IPTVEAIQ---RIFKVP-------KKTAEQWLEEIRK---DQIE- 498 (517) Q Consensus 446 d~i-~~d~~~~~~---~~~~~~~~--G~-------~S~~~~l~---~~~~~~-------eeea~~el~~i~~---E~~~- 498 (517) -++ .--+...++ +..+.++. ++ +...+++. ...|++ +|+++...+|.++ ++.+ T Consensus 419 s~la~l~r~~~~~~l~~~~~~i~~l~~~~p~v~d~id~d~~~~~~a~~~Gvp~~~i~~~~e~~~~~~~~~~~~~~~~~~~ 498 (514) T protein:vir:80 419 TGIPALTRNIETANILRATQEASAIVPALVQLSKRFDPEKLVERIFANNSVDLSTLSKDPDVVAAEAEQEAALAQQQLDV 498 (514) T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhcCCHHHHHHHHHHHhCCCHhhccCCHHHHHHHHHHHHHHHHHHHHH Confidence 111 011111111 11122210 11 22333333 334543 3333222222221 1111 Q ss_pred -cCCCCCccccCCCCC Q lcl|Aclame:pro 499 -LDPVTISQRAQKRMF 513 (517) Q Consensus 499 -~~~~~~~~~~~~~~~ 513 (517) +.+...++..+.-.. T Consensus 499 ~~~~~~~~~~~~~~~~ 514 (514) T protein:vir:80 499 ASGALAAETSAGVLTS 514 (514) T ss_pred HHHHHHHhhhccccCC Confidence 111111111111111 No 219 >protein:vir:103219 Length: 201 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:1605 # MgeName: JK06 # Cross-refs: genbank:acc:YP_277473;genbank:gi:71834115;genbank:GeneID:3562330 Probab=95.29 E-value=0.0003 Score=39.89 Aligned_cols=186 Identities=11% Similarity=0.065 Sum_probs=76.5 Q ss_pred CCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeecchHHhccCCCCcccccCccCCcccceeeeecCCCCCCcceEEe Q lcl|Aclame:pro 269 PLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRTVFVSDVMLRTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVT 348 (517) Q Consensus 269 plG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~ 348 (517) -+.+. +|-+.++.--..+. .|+.. ++..+..+..+-.+.++..+++++ T Consensus 1 V~k~~------~l~~~~~~~~~~~~-------~r~~~-------------------~~~~~~~~~~~~ld~~~e~~e~~~ 48 (201) T protein:vir:10 1 MWKAK------GLADLCDDSDGAAR-------LRLAQ-------------------VDNNSGVGQAIGIDADSEEYNVLN 48 (201) T ss_pred Cccch------HHHHHhcCChHHHH-------HHHHH-------------------HHHhhhhhhhheeecCCcceeeee Confidence 11222 22222211000000 00000 000011111111122223355555 Q ss_pred cccChHHHHHHHHHHHHHHHHHhCCCcccc-ccCCCcc-chHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 349 HDIRTEQYKEAINQALRTLEMELKLSVGTF-SFDGRSM-KTATEIVSENDLTYRTRNDHV-YEVEQFIKGLVISVLELAK 425 (517) Q Consensus 349 ~dir~e~~~~~l~~~l~~i~~~~g~s~~~~-~~~~~~~-~TAtei~a~~~~~~~t~~~~~-~~~~~al~~li~~il~~~~ 425 (517) .++ .-....+..+...|+..+|++...+ |-.-+|. +|+..- .+-.|..+..+| ..++.+|+.|+..+. T Consensus 49 ~~l--sGl~d~l~~~~~~iaa~s~iP~t~LfG~sp~Glnatge~d---~~nyyd~i~~~Qe~~l~p~le~l~~~~~---- 119 (201) T protein:vir:10 49 SDI--GGIDTFLSQKFDRIVALSGIHEIILKGKNVGGVSASQNTA---LETFYGYVDRKRKAELLPLLEFLLPFIV---- 119 (201) T ss_pred cCc--CChHHHHHHHHHHHHhHhcCchhhhcCCCCccccccchhH---HHHHHHHHHHHHHHHHHHHHHHHHHhhc---- Confidence 443 3444556677778888888865432 2222333 233322 233455555554 677888887766432 Q ss_pred hhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHH-------HHhcCCCCHHHHHHhhCCCCHHHHHHHHHHHHHhccc Q lcl|Aclame:pro 426 TYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQ-------AKTFGFIPTVEAIQRIFKVPKKTAEQWLEEIRKDQIE 498 (517) Q Consensus 426 ~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~-------~~~~G~~S~~~~l~~~~~~~eeea~~el~~i~~E~~~ 498 (517) . ..+++|.|+.-...+..+.++...+ ++.+|++| .+++.++|.+......- T Consensus 120 -------~---~~~~~~~f~pL~~~s~kekAei~~~~a~a~~~~~~~g~i~------------~~e~r~~L~~~~~~~~~ 177 (201) T protein:vir:10 120 -------T---EQEWSVEFNPLSQVSDKDKSEILEKNVNSVAALIAAGIID------------ADEARDTLRAISTEVKI 177 (201) T ss_pred -------C---CCCceEeeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCC------------HHHHHHHHHhcCCcCCC Confidence 1 2368999999888887766654433 33344444 44444444332111000 Q ss_pred ----cCC-CCCccccCCCCCCCCC Q lcl|Aclame:pro 499 ----LDP-VTISQRAQKRMFGDEE 517 (517) Q Consensus 499 ----~~~-~~~~~~~~~~~~G~ee 517 (517) .++ ....+..++...+++| T Consensus 178 ~~~~~~~~~~~~e~~dp~~~~~~~ 201 (201) T protein:vir:10 178 GEGSIQTEVVINESEDPLDVSANN 201 (201) T ss_pred CCCCCCccccccccCCCCCCCCCC Confidence 000 0001111122223333 No 220 >protein:vir:6210 Length: 394 # NCBI annotation: Portal protein # Family: family:all:10882 # MgeID: mge:128 # MgeName: phBC6A52 # Cross-refs: genbank:acc:NP_852590;genbank:gi:31415850;genbank:GeneID:1489208 Probab=95.22 E-value=0.0025 Score=34.84 Aligned_cols=374 Identities=13% Similarity=0.082 Sum_probs=148.5 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccChH---- Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLR---- 76 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~---- 76 (517) ||+|+++++++.+... .. ......--+..++.|.+ ++ ....+....- T Consensus 1 MGl~~~~~~~~~~~~~-------------~~-----~~~~~~~~~~~~~~~~~--vt---------~~~al~~~~v~~~i 51 (394) T protein:vir:62 1 MGLRDRFSNYLFKKAE-------------KR-----GYLDNVLGKSIRYSGVY--VT---------DSNILQSSDVYELL 51 (394) T ss_pred CchhhhhhhhccCCCC-------------ch-----hhhhhhhhcccccCccc--cC---------hhhhhccHHHHHHH Confidence 9999998876532110 00 00000000111111110 00 0001111111 Q ss_pred HHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeCCeeEEE Q lcl|Aclame:pro 77 KLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDNGEIEFS 156 (517) Q Consensus 77 ~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~g~~~i~ 156 (517) ..||+..|++ +..+.-.+. .+ .....+...+.+--.......-...++.+.+-.|.+++.+ +..... T Consensus 52 ~~Ia~~iA~l----p~~v~~~~g--~~---~~~~~~~~Ll~~PN~~~t~~~f~~~~~~~lll~Gn~~~~i--~~~~~~-- 118 (394) T protein:vir:62 52 QDISNQMVLA----DIVVEDEFG--NE---IKDDIALQILRNPNNYLTQSEFIKLMTNTYLLEGETFPIL--NGAQIH-- 118 (394) T ss_pred HHHHHhhccc----ceEEEcCCC--cc---cchhhHHHHhccCCCCCCHHHHHHHHHHHHHhcCCeEEEE--ecceee-- Confidence 3444444433 222211111 00 0011111111110000111122223445555567666543 322111 Q ss_pred EEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCccccccccc Q lcl|Aclame:pro 157 WALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELY 236 (517) Q Consensus 157 ~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~ 236 (517) .++.+.|+. ++... | + |..+ |..++- T Consensus 119 --~~~~~~~~~-------------------~~~~~-~------------------~-----~~~~-----~~~~~~---- 144 (394) T protein:vir:62 119 --LASNVFTEL-------------------DDNLV-E------------------H-----FNIG-----GHEIPP---- 144 (394) T ss_pred --ccccceEEE-------------------CCceE-E------------------E-----EeeC-----CEEech---- Confidence 112222210 01110 0 0 1000 111110 Q ss_pred CCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhc-cceeecc-hHHhccCC Q lcl|Aclame:pro 237 EGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMG-QRTVFVS-DVMLRTVP 314 (517) Q Consensus 237 ~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~-~~~i~v~-~~~l~~~~ 314 (517) .+ +.|++.+..+ ..+|+|.+.-+...|......-....+-++.| .+.-++- +..+.... T Consensus 145 ----~e----------iih~r~~~~d-----~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~~~~~~ 205 (394) T protein:vir:62 145 ----CM----------IRHVKNIGAD-----HLRGKGILDLGRDTLEGVMSAEKTLTDKYKKGGLLTFLLNLDAHINPQN 205 (394) T ss_pred ----hh----------eEEecCcCCC-----CccccChHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEEeCCCCCcCH Confidence 01 3456543222 24699998888777776655554444555654 4443331 11111000 Q ss_pred CCcccccCccCCcccceeeeecC------CCCCCcceE--EecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccc Q lcl|Aclame:pro 315 DESGMPPPQVFDPDVNVYKSIRM------GTDEEFVKD--VTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMK 386 (517) Q Consensus 315 ~~~~~~~~~~fd~~~~~y~~~~~------~~~~~~v~~--~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~ 386 (517) .........|.. .|..... -..+.+++. +++.....+..+..+...++|+...|++|..++.... . T Consensus 206 -~~~~~~~~~~~~---~~~g~~n~g~~~vl~~g~~~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~--s 279 (394) T protein:vir:62 206 -GAQSKLINAILD---QLESIDEARSVKMIPLGKGYSIDTLKSPLDDEKTLAYLNVYKKDLGKFLGINVDTYTELIK--E 279 (394) T ss_pred -HHHHHHHHHHHH---HhccccccCceeEeeCCCceeEEecCCCcchHHHHHHHHHHHHHHHHHhCCCHHHcCCCCC--c Confidence 000000111110 1221110 012333443 4444456677887888888999999999999874221 1 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcC Q lcl|Aclame:pro 387 TATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFG 466 (517) Q Consensus 387 TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G 466 (517) ++.+. .+..++.+|.-++..|....+. .++... ....+.|+|+.....+.++.++...+++++| T Consensus 280 n~e~~-------------~~~~~~~~l~P~~~~ie~~l~~-kll~~~--~~~~~~~~fd~~~~~~~~~~~~~~~~~~~~g 343 (394) T protein:vir:62 280 DIEKA-------------MMYIHNKAVRPIMKNFEDHLSL-LFYAQN--SGKRIKFKINILDFVTYSNKTNIGYNLVRTA 343 (394) T ss_pred CHHHH-------------HHHHHHHHHHHHHHHHHHHHhh-hhcCcc--ccCceEEEechhhhcCHHHHHHHHHHHHhCC Confidence 11111 1222333444444444332221 222221 2345788898888888888888888999999 Q ss_pred CCCHHHHHHhhCCCC---HHHHHHHHHHHHHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 467 FIPTVEAIQRIFKVP---KKTAEQWLEEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 467 ~~S~~~~l~~~~~~~---eeea~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) +|+.-+++.. .|+. +++.+...... ...|...........-|+|| T Consensus 344 ~~T~NE~R~~-~gl~p~~~~~gd~~~~~~-----n~~~~~~~~~~~~~~kgge~ 391 (394) T protein:vir:62 344 ITSPDNVADM-LGFPKQNTKESQAIYISN-----DVTEIGKKEATDGSLGGGEE 391 (394) T ss_pred CcCHHHHHHH-hCCCCCCCCCCCeeeccc-----ccccccccccccccCCCCCC Confidence 9999986654 3543 23332221100 00111111111122233443 No 221 >protein:vir:106716 Length: 698 # NCBI annotation: gp18 # Family: family:all:297 # MgeID: mge:1599 # MgeName: Bcep1 # Cross-refs: genbank:acc:NP_944326;genbank:gi:38638625;genbank:GeneID:2657345 Probab=94.97 E-value=0.0031 Score=34.37 Aligned_cols=418 Identities=10% Similarity=0.033 Sum_probs=157.0 Q ss_pred CchHHHHHHH-HHHHHHH-hhcccchhhhccccCcCCHHHHHHHHHHHHHhcCC-CcccccccccCccccccccccChHH Q lcl|Aclame:pro 1 MKVIQRIKNF-FKRGGYA-LSGQTLKSINDHEKINIDPNELARIERNLRQYEGD-YPQVEYINSQGKIQERDYMTLNLRK 77 (517) Q Consensus 1 m~~~~~ik~~-~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~-~~~~~~~~~~~~~~~~~~~~ln~~~ 77 (517) .++- |+| ++-.++- .+.+...--.|-..+ .++.+ .||.+. ++-+.+.+.- -.++.=+ T Consensus 67 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l----~~~~~~~F~Gy~~la~l--------aQ~~eyr 126 (698) T protein:vir:10 67 LRLA---RQFEVDVSNYTPRERRAASYALDFNGT-----SMDAL----SFVTSSGFPGFPTLVLL--------AQLPEYR 126 (698) T ss_pred cccc---ccceeccccCCccccchhhhhhccccc-----ccccc----hhhhccCcchHHHHHHH--------hhccchh Confidence 2221 110 0000000 000000000000000 01111 245443 1111111100 0011112 Q ss_pred HHHHHHhhhhcCCcce-------------eEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEE Q lcl|Aclame:pro 78 LSADVLSGLVFNEQCE-------------VYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTV 144 (517) Q Consensus 78 ~i~~~~A~ll~~e~~~-------------i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~ 144 (517) ..+..+|+-++.+=-. +.+.+......+.+ .-+.|+.-++.-++...++++++.+-.+||++. T Consensus 127 ~~~~~ia~e~~R~w~~~~~~~~e~~~~~g~~~~~~~~~~~d~d----qi~~L~~e~erl~V~~~l~eai~~aRlfGGa~~ 202 (698) T protein:vir:10 127 AMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGD----QLKQINDEIERLRIRDAVRTTVIHDQAFGRAHP 202 (698) T ss_pred hHHHHHHHHhhcccceeccccchhhhhhcccccccccccccHH----HHHHHHHHHHHHHHHHHHHHHHHhcccccceEE Confidence 3333344333322111 12211111111111 223455555556799999999999999999986 Q ss_pred EEEEeCCe-----eE--------------EEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeeccee Q lcl|Aclame:pro 145 RPYVDNGE-----IE--------------FSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTE 205 (517) Q Consensus 145 k~~~d~g~-----~~--------------i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~ 205 (517) .+-+++.. +- +..++|..+.|-..+...-. ...|| T Consensus 203 ~i~I~gdd~~l~~PL~~~~~~I~kGslKGL~ViDp~~vtP~~~n~~dP~--------------spdfg------------ 256 (698) T protein:vir:10 203 YFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPV--------------ADDFY------------ 256 (698) T ss_pred EEEeecCccccccccccccccccCccceeeeeecccccccchhhhccch--------------hhccC------------ Confidence 65554321 10 11112222112000000000 00000 Q ss_pred eccceEEEEEEEeecCCccccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccC-CCCCCcchhhhhHHHHHH Q lcl|Aclame:pro 206 EGESLYVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINP-HSPLGLGITDNSVSTLKK 284 (517) Q Consensus 206 ~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~-~splG~S~~~~~~~lid~ 284 (517) ....|+|. |++|- . .|. +.+...|.|....+ +.-+|+|....+.+-+++ T Consensus 257 -kP~~y~V~------------G~~IH----~------------SRL-~~~vg~pvpd~LKp~y~f~G~Sv~q~~~e~V~~ 306 (698) T protein:vir:10 257 -KPSTWWMI------------GSEVH----A------------TRL-HTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDN 306 (698) T ss_pred -CCceEEEe------------cceec----c------------eeE-EEecCCCchhhhcchhccCCccHHHHHHHHHHH Confidence 00111110 11110 0 111 11111122222211 234699999999999999 Q ss_pred HHHHHHHHHHHHHhccceeecchHHhccCCCCcccccC---ccCCcccceeeeecCCCCCCcceEEecccChHHHHHHHH Q lcl|Aclame:pro 285 INDTYDQFWWEIKMGQRTVFVSDVMLRTVPDESGMPPP---QVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAIN 361 (517) Q Consensus 285 lD~~~s~~~~e~~~~~~~i~v~~~~l~~~~~~~~~~~~---~~fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~ 361 (517) .+.+-.....-+.......+ -.++-.-..+++..... ..+..-+..+..+-.+.++..++ |.+....-.-..+. T Consensus 307 ~~rT~~~v~~Li~~~~~~~l-~~dla~aL~~g~~~~l~~R~eli~~~Rsn~G~~llDk~~Eefe--q~st~lSGLddVi~ 383 (698) T protein:vir:10 307 WLRTRQSVSDIVKQFSVSGI-LMDLAQALTPGANVDLSMRAELINRYRDNRNILFLDKATEEFF--QFNTPLSGLDALQA 383 (698) T ss_pred HHHHhhhHHHHHHHhhHHHH-HHHHHHhcCChhhHHHHHHHHHHHHhcCccceEEEecCCcceE--EEecCcCCHHHHHH Confidence 98887777665532222222 11222222222221110 01111111122112232233344 44455566666677 Q ss_pred HHHHHHHHHhCCCccc-cccCCCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccc Q lcl|Aclame:pro 362 QALRTLEMELKLSVGT-FSFDGRSM-KTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEH 439 (517) Q Consensus 362 ~~l~~i~~~~g~s~~~-~~~~~~~~-~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~ 439 (517) .+..+++-.++++... ||-.-.|. .|+..=...+.+..... .++.++.+|+.|+..|.. ..++.. +.+ T Consensus 384 qf~q~VAgaa~IPltkLfGqSPkGlNATGE~D~rnYYD~I~s~--Qe~~L~p~L~rl~~ii~r-----S~~G~i---dp~ 453 (698) T protein:vir:10 384 QAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAY--QRNALQQLMNDVIVMIQL-----SLFGAV---DPS 453 (698) T ss_pred HHHHHHHhhhcCchhhhhccCCcccCccchhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH-----HhcCCC---CCc Confidence 7777787777777543 33333343 45543333333333332 467888888888776643 223333 235 Q ss_pred eEEEeCCCccCCHHHHHHH-------HHHHHhcCCCCHHHHHHhhCC-----CCH-HHHHHHHHHHHHhccccCCCCCcc Q lcl|Aclame:pro 440 IGVDFDDGVFQDRSALLRF-------YGQAKTFGFIPTVEAIQRIFK-----VPK-KTAEQWLEEIRKDQIELDPVTISQ 506 (517) Q Consensus 440 v~i~f~d~i~~d~~~~~~~-------~~~~~~~G~~S~~~~l~~~~~-----~~e-eea~~el~~i~~E~~~~~~~~~~~ 506 (517) |++.|+-=-..++.+.++. ...++..|+++..+...++-. ... .+++.+- -+.+++...+. T Consensus 454 i~~~fnPL~qmtd~EkAeI~~k~A~~d~~~~~~gvI~~~evr~rL~~d~~s~Y~~~~d~~d~p------~~~~~~~~~~~ 527 (698) T protein:vir:10 454 IKWQWNALRELDDLEVAEARYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDP------GAPADDDIDGV 527 (698) T ss_pred ceEEeCCCCCcCHHHHHHHHhhhhHHHHHHHHhcCCCHHHHHHHHhccCCCccccccCCcccC------CCCCCCcchHH Confidence 8999985445554443332 223345677776654443321 110 0010000 00000110000 Q ss_pred cc---CCCCCCCCC Q lcl|Aclame:pro 507 RA---QKRMFGDEE 517 (517) Q Consensus 507 ~~---~~~~~G~ee 517 (517) -+ ....+|+.+ T Consensus 528 ~~~~~~~~~~~~~~ 541 (698) T protein:vir:10 528 LTYVQRMAEGGDTG 541 (698) T ss_pred HhhhcCCcCCCCcc Confidence 00 011111111 No 222 >protein:vir:4194 Length: 540 # NCBI annotation: putative portal protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:88 # MgeName: psiM100 # Cross-refs: genbank:acc:NP_071819;genbank:gi:11863102;genbank:GeneID:1257604 Probab=94.95 E-value=0.0031 Score=34.34 Aligned_cols=411 Identities=10% Similarity=0.048 Sum_probs=156.6 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccChHHHHH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLRKLSA 80 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~~~i~ 80 (517) |.+++.-|= +.+++-+ -++.+.. .+...|| .|+ +.+..- .+-..+.......+ T Consensus 6 ~~~~~~~~~-----------~~~~~~~------~~~~~~~--~~~~~~~--~pp-~~~~~L-----a~~~~~n~~v~scI 58 (540) T protein:vir:41 6 LSIKSLEKY-----------RAIKGDT------DSQALKE--DRFEEYV--EPK-VHPLVL-----LSLLQVNPYHASAC 58 (540) T ss_pred cChhhccch-----------hhhhccc------ccccccc--CCCCccc--cCC-CCHHHH-----HHHHHhcHHHHHHH Confidence 333321110 0000000 0111111 1111222 111 111000 01111222334444 Q ss_pred HHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe-CCee-EEEEE Q lcl|Aclame:pro 81 DVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD-NGEI-EFSWA 158 (517) Q Consensus 81 ~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d-~g~~-~i~~v 158 (517) +..|+.+.+-+..+...+... .+++-.. ...+...+...+.+....|.+++.+..+ .|++ .+..+ T Consensus 59 ~~ia~~ia~~~~~i~~~~~~~-----------~~~lpN~--~~t~~~f~~~~v~dlll~Gnayv~i~r~~~G~~~~L~~i 125 (540) T protein:vir:41 59 SIKANDILRTGYLIDGDDGGV-----------EELLRAC--RPSFEFILLQALEDLQVFNYCTLEVVRDDQGEPVRLDYI 125 (540) T ss_pred HHHHHHHhcCCceEecCccch-----------hhhccCC--CCCHHHHHHHHHHHHHhcCCeEEEEEECCCCcEEEEEEe Confidence 555555555444443322211 1111100 0123334445566778889998887776 4554 57888 Q ss_pred cCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccccCC Q lcl|Aclame:pro 159 LANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEG 238 (517) Q Consensus 159 ~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~ 238 (517) +|+.+-+. .+.++. + ...++...+|. ..++ ....+.. .+ | T Consensus 126 ~~~~V~v~-~~~~~~-----~----~~~d~~~~~~~----~~~~----------~~~~~~~-~~----g----------- 165 (540) T protein:vir:41 126 PAHTVRVH-RDGSRY-----M----QTWDGIHVTYF----KDYR----------YEGEVNP-DN----G----------- 165 (540) T ss_pred CCcceEEe-EcCcee-----E----eeecCceeeee----eccc----------ccceeec-cc----c----------- Confidence 88887653 222111 0 11111111111 0000 0000000 00 0 Q ss_pred CCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhcc-ce--eecchHHhccCCC Q lcl|Aclame:pro 239 MQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQ-RT--VFVSDVMLRTVPD 315 (517) Q Consensus 239 l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~-~~--i~v~~~~l~~~~~ 315 (517) .....++. + -++||+.+.++ +..+|+|.+..+...+.....+-.-..+-|+.|. +. |.++..+...... T Consensus 166 -~~~~~~~~-~--eViHir~~~~~----~~~~G~Spi~~~~~~i~~~~~~~~~~~~~f~Ng~~p~giL~~~g~l~~e~~~ 237 (540) T protein:vir:41 166 -EDQDGVGA-N--EIIFIHLPSPI----CSYYGVPRYLSAAPSILAMQKIDEYNYAFFDNYTIPSYVITVTGEFEDEMEL 237 (540) T ss_pred -ccceeecc-c--ceEEecCCCCC----CCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCcccCchhcc Confidence 00001110 1 14566654222 3458999998777666555333333333455543 32 2233222111000 Q ss_pred Cccc--ccCccCC------------cccc-eeeeecC-CCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccc Q lcl|Aclame:pro 316 ESGM--PPPQVFD------------PDVN-VYKSIRM-GTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFS 379 (517) Q Consensus 316 ~~~~--~~~~~fd------------~~~~-~y~~~~~-~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~ 379 (517) +... .....|. .... ++....+ .+++-.++-++......++.+..+...+.|+...|++|..+| T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~g~~~nag~~~vLe~~~~~~~g~~~~pl~~~~~d~qfle~~~~~~~eIa~afgVPp~~lG 317 (540) T protein:vir:41 238 GSDGEPTGRTVLQGLIEDNFKYLKEAPHTPLVFSIPGGDTVEVTFTPLNTSQKELSFREYAAEKKHDIAAAHMIDPYRLG 317 (540) T ss_pred chHHHHHHHHHHHHHHHHHhccccccccceEEEecCCCcccceeEEecccchhHHHHHHHHHHHHHHHHHHhCCCHHHcC Confidence 0000 0000000 0000 1111111 112223444555556677888888888999999999999998 Q ss_pred cCCCcc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHH Q lcl|Aclame:pro 380 FDGRSM---KTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALL 456 (517) Q Consensus 380 ~~~~~~---~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~ 456 (517) +...+. .++.+.... -.-.++.-....++.+|...+ .. .... .+.|.|+..-.... +.+ T Consensus 318 ~~~~~~~n~sn~eq~~~~--f~~~tL~P~~~~ie~~ln~~L------------~~-~~~~--~~~i~f~~~~ll~~-D~~ 379 (540) T protein:vir:41 318 ITDVGPLGGNFAEVARRT--YYESVVRPQQEIVSSVLTDFI------------QL-KLDP--GARFVFNEEILMES-EFV 379 (540) T ss_pred cccCCCCCcccHHHHHHH--HHHHHHHHHHHHHHHHHHHhh------------hh-ccCC--ceEEEecchhhcch-HHH Confidence 754332 233322111 122233334444444444321 10 0011 24555665444443 334 Q ss_pred HHHHHHHhcCCCCHHHHHHhhCCCC---HHHH------HHHHHHHHHhccccCCCCC-----------c-----cccCCC Q lcl|Aclame:pro 457 RFYGQAKTFGFIPTVEAIQRIFKVP---KKTA------EQWLEEIRKDQIELDPVTI-----------S-----QRAQKR 511 (517) Q Consensus 457 ~~~~~~~~~G~~S~~~~l~~~~~~~---eeea------~~el~~i~~E~~~~~~~~~-----------~-----~~~~~~ 511 (517) ..+..++++|+++.-+++..+.|.. +.-. ..++...........+... + +.+.+. T Consensus 380 ~~~~~lv~~G~lT~NE~Re~L~g~e~gdd~~l~p~n~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~ 459 (540) T protein:vir:41 380 HNYALLVQCGVLTPSEVREKLFGLDGGPDMFMVPSSIGKSAMKRQKRNYEKNQINEIKRTYAKYKPRIQEIISSESPLED 459 (540) T ss_pred HHHHHHHhCCCCCHHHHHHHhCcCcCCCcccccccccccccccccccccCCCCccccccccchhcccccCcccccccccc Confidence 4566788999999999876665543 2110 0111110000000000000 0 000000 Q ss_pred CCCCC-C Q lcl|Aclame:pro 512 MFGDE-E 517 (517) Q Consensus 512 ~~G~e-e 517 (517) .+++- | T Consensus 460 ~~~~~~~ 466 (540) T protein:vir:41 460 KKKKIDE 466 (540) T ss_pred ccccccc Confidence 01111 1 No 223 >protein:vir:4156 Length: 542 # NCBI annotation: portal protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:87 # MgeName: psiM2 # Cross-refs: genbank:acc:NP_046965;genbank:gi:9630535;genbank:GeneID:1261709 Probab=94.80 E-value=0.0035 Score=34.07 Aligned_cols=413 Identities=10% Similarity=0.090 Sum_probs=152.1 Q ss_pred hHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHH--HHHHHHhcCCCcccccccccCccccccccccChHHHHH Q lcl|Aclame:pro 3 VIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARI--ERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLRKLSA 80 (517) Q Consensus 3 ~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i--~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~~~i~ 80 (517) ||. +-+ .|.++++...|.....-...+ ..+..||+--.++ .. -.+-..+.+.-..++ T Consensus 1 ~~~----------~~~---~i~s~~~~~~i~~~~~~s~~~~~~~~~~~~~pp~~~---~~-----la~l~~~n~~v~scI 59 (542) T protein:vir:41 1 MFN----------YHL---SIRSLEKYKAIKREEVESQALGETRFEEYVEPKVNP---LV-----LLSLLQVNPYHASAC 59 (542) T ss_pred Ccc----------ccc---cccccccchhhhhccccccccccccCCccccCCCCH---HH-----HHHHHhhcHHHHHHH Confidence 332 000 122222211110000000000 1111233211100 00 000011112223344 Q ss_pred HHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhh--hhHHHHHHHHHHHHHhhCCEEEEEEEeC-Cee-EEE Q lcl|Aclame:pro 81 DVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQH--NKFIKNLSDYLEPTFALGGLTVRPYVDN-GEI-EFS 156 (517) Q Consensus 81 ~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~--n~f~~~~~~~~~~a~~~G~~~~k~~~d~-g~~-~i~ 156 (517) +..|+.+..-+.. +..... ..+...+-+ ..+...+...+.+.+..|.+++.+..|. |++ .+. T Consensus 60 ~~ia~~IA~l~~~--~~~~~~------------~~l~~~lpN~~~s~~~f~~~~v~~lll~Gnayi~i~rd~~G~~~~L~ 125 (542) T protein:vir:41 60 SIKANDIIRTGYI--LEGDDE------------GVVDEFIRACKPSFEYVLLRALEDLQVFNYCTLEVVRDDRGDPIRFE 125 (542) T ss_pred HHHHHHHhhCcee--eecccc------------hhhhhhcCCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEE Confidence 4444444333333 221110 111111111 1233445556677888899999887774 554 577 Q ss_pred EEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCccccccccc Q lcl|Aclame:pro 157 WALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELY 236 (517) Q Consensus 157 ~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~ 236 (517) .++|..+.+. .+.+..... ..+....+|.... ..+.+... ....+.. T Consensus 126 ~l~~~~v~v~-~d~~~~~~~--------~~~~~~~~~~~y~---------------~~~~~~~~--~g~~~~~------- 172 (542) T protein:vir:41 126 YIPSHTIRVH-KDGSRYRQT--------WDGVNITHFKDYR---------------YEGEINPE--TGEDQDS------- 172 (542) T ss_pred EEcCcceEEE-EcCCeeEee--------ecCCcceeEEeec---------------cccccccc--ccccccc------- Confidence 8888887653 332221110 1111111111000 00000000 0000000 Q ss_pred CCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHH-HHhc-cce--eecchHHhcc Q lcl|Aclame:pro 237 EGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWE-IKMG-QRT--VFVSDVMLRT 312 (517) Q Consensus 237 ~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e-~~~~-~~~--i~v~~~~l~~ 312 (517) +++ --++||+.+. ..+.++|+|.+..+...+... .....+.+. |+.| .+. +.++..+.+. T Consensus 173 --~~~---------~eIiHir~~~----~~~~~~Glspi~~~~~~i~~~-~~~~~~~~~~f~Ng~~p~gIL~~~~~l~de 236 (542) T protein:vir:41 173 --VGA---------NELVFIHIPS----PVCSYYGVPRYVSAAPAILAM-QKIDEYNYAFFDNYTIPSYVITVTGEFEDE 236 (542) T ss_pred --cCc---------ccEEEecCCC----CCCCcccccHHHHHHHHHHHH-HHHHHHHHHHHhccCCccEEEEeCCccccc Confidence 000 1145666442 124568999998887766543 455555544 4554 333 3333332211 Q ss_pred CCCCccccc------CccCCc---------ccceeeeecCC-CCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCcc Q lcl|Aclame:pro 313 VPDESGMPP------PQVFDP---------DVNVYKSIRMG-TDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVG 376 (517) Q Consensus 313 ~~~~~~~~~------~~~fd~---------~~~~y~~~~~~-~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~ 376 (517) ......... ...|.. ..-++....++ +++-.++-++......++.+..+...+.|+...|++|. T Consensus 237 ~~~~~~~~~e~~~~lk~~~~~~~~g~~~n~gk~~vL~~~~~~~~g~~~~pl~~~~~d~qfle~~~~~~~~Ia~afgVPp~ 316 (542) T protein:vir:41 237 LEEDPDGNPTGRTVIQALIEDNFKHLKEAPHTPLVFSIPGGDTVKVTFTPLNTSQKELSFREYAAEKKYDIAAAHMIDPY 316 (542) T ss_pred cccccccCHHHHHHHHHHHHHHHhhhhcccCceeEeeccCCcccceeEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHH Confidence 110000000 000000 00011111111 12222333444445667777777778899999999999 Q ss_pred ccccCCCcc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHH Q lcl|Aclame:pro 377 TFSFDGRSM---KTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRS 453 (517) Q Consensus 377 ~~~~~~~~~---~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~ 453 (517) .+|+...+. .++.+. ...-...++.-+.+.++.+|... +... ....+.+.|+..-... . T Consensus 317 ~lG~~~~~t~n~sn~Eq~--~~~f~~~tL~P~~~~ie~~ln~~------------L~~~---~~~~~~~~f~~~~ll~-~ 378 (542) T protein:vir:41 317 RLGIADTGPLGGNFAEVT--RRTYYESVVRPQQNIISSILTDF------------FQVK---FNPKTRFKFNDETLLE-S 378 (542) T ss_pred HhCcCCCcccccccHHHH--HHHHHHHHHHHHHHHHHHHHHhh------------cccc---cCCceEEEecchhhcc-h Confidence 998764332 233222 11112223333333333333321 1110 1122444554332222 2 Q ss_pred HHHHHHHHHHhcCCCCHHHHHHhhCCCC---HHHH---H---H---------HHHHHHHhccccCC--CCCc-----ccc Q lcl|Aclame:pro 454 ALLRFYGQAKTFGFIPTVEAIQRIFKVP---KKTA---E---Q---------WLEEIRKDQIELDP--VTIS-----QRA 508 (517) Q Consensus 454 ~~~~~~~~~~~~G~~S~~~~l~~~~~~~---eeea---~---~---------el~~i~~E~~~~~~--~~~~-----~~~ 508 (517) ...+.+..++++|+++..+++.++.|+. +.-. . + +..++++-+..... +.++ ..+ T Consensus 379 d~~~~~~~~v~~GilT~NE~Re~L~g~~pgdd~~l~p~~~~~~~~~~~~~n~~~~~~~~~~k~~~k~~~~~~~~~~~~~~ 458 (542) T protein:vir:41 379 DSVRNCALLVQSGVLTPAEARERLFGLDGGPDIFMVPSKGAAKSVKRQERNYEKNQIREIRKIYAKYRPRFNEIISSKLS 458 (542) T ss_pred HHHHHHHHHHhCCCCCHHHHHHhhCCCCCCCccccccccccccccccCCcCCCCCchhhhhhcccccCcccccccccccc Confidence 2334456678999999999876565543 1100 0 0 00000000000000 0011 001 Q ss_pred CCCCCCCCC Q lcl|Aclame:pro 509 QKRMFGDEE 517 (517) Q Consensus 509 ~~~~~G~ee 517 (517) .+...|+-| T Consensus 459 ~~~~~~~~~ 467 (542) T protein:vir:41 459 AEEKKKKID 467 (542) T ss_pred chhhccccc Confidence 111111111 No 224 >protein:vir:9702 Length: 406 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:174 # MgeName: 315.2 # Cross-refs: genbank:acc:NP_795464;genbank:gi:28876227;genbank:GeneID:1257772 Probab=94.63 E-value=0.0039 Score=33.79 Aligned_cols=385 Identities=11% Similarity=0.069 Sum_probs=145.0 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccChHHHHH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLRKLSA 80 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~~~i~ 80 (517) |++|++- +. .....+ .-|..++.|..... +..... .+.....+ --..|| T Consensus 1 m~~f~~~----------------~~----~~~~~~-------~~~~~~~~~~~~~~-~~~~~A-l~~~~V~~--~i~~Ia 49 (406) T protein:vir:97 1 MSFFQPL----------------GT----SKVSYD-------DYISSVLAGDVSQK-YLGVSA-LKNSDILT--ATSIIA 49 (406) T ss_pred Ccccccc----------------CC----CCCCcc-------hHHHHHhcCCCCcc-cccchh-hccHHHHH--HHHHHH Confidence 8877421 00 001111 12333444443221 000000 00000000 124566 Q ss_pred HHHhhhhcCCcceeEecCcccccccccchhHHHHHHHH-HHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe--CCee-EEE Q lcl|Aclame:pro 81 DVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQH-VFQHNKFIKNLSDYLEPTFALGGLTVRPYVD--NGEI-EFS 156 (517) Q Consensus 81 ~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~-~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d--~g~~-~i~ 156 (517) +..|+| +..+.-.+.. . .....+...|+. --.......-.+.++.+.+-.|.+++.+..+ +|.+ .+. T Consensus 50 ~~iA~l----p~~~~~~~g~--~---~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gnay~~i~r~~~~g~~~~L~ 120 (406) T protein:vir:97 50 GDIARF----PLVKKDVNGD--I---IHDEDINYLLNVKSTSNASARTWKFAMAVNAILTGNSFSRILRDPKTNQALQFQ 120 (406) T ss_pred HhhhhC----eeEEEecCcc--c---cccchHHHHhhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCCCeEEEEE Confidence 666665 2211111110 0 001122222220 0001112233344556666778888877665 3443 577 Q ss_pred EEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCccccccccc Q lcl|Aclame:pro 157 WALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELY 236 (517) Q Consensus 157 ~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~ 236 (517) .++|+++-+...+.+. ..|+ +... .+ |..+.+ + T Consensus 121 ~i~p~~v~v~~~~~~~------------------~~y~---~~~~-------------------~~----~~~~~~---~ 153 (406) T protein:vir:97 121 FYRPSETTVEETDNHE------------------IVYT---FTDM-------------------LT----AKQVKC---F 153 (406) T ss_pred EECCCeeEEEEcCCce------------------EEEE---EEec-------------------CC----ceEEEE---c Confidence 7778877653222111 1111 0000 00 111110 0 Q ss_pred CCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhc-cceeec-chHHhccCC Q lcl|Aclame:pro 237 EGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMG-QRTVFV-SDVMLRTVP 314 (517) Q Consensus 237 ~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~-~~~i~v-~~~~l~~~~ 314 (517) +.+ +.||+.+.. +...|+|.+.-+...|.....+-.-..+-++.| .+.+++ +...+. T Consensus 154 ---~~e----------vih~r~~~~-----dg~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng~~~~~i~~~~~~l~--- 212 (406) T protein:vir:97 154 ---AHD----------VIHWKFFSH-----DTILGRSPLLSLGDEIDLQTGGINTLIKFFKDGFSSGILTMKGAQLS--- 212 (406) T ss_pred ---ccc----------EEEecCCCC-----CCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEecCCCCC--- Confidence 001 335543211 223588988777776664433333223334543 333332 111110 Q ss_pred CCcccccCccCCcccceeeeecCC-----CCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHH Q lcl|Aclame:pro 315 DESGMPPPQVFDPDVNVYKSIRMG-----TDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTAT 389 (517) Q Consensus 315 ~~~~~~~~~~fd~~~~~y~~~~~~-----~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAt 389 (517) +.........|.. .+..-+.+ +++..++.++....+.++.+..+...++|+...|++|..+|...+...++. T Consensus 213 ~e~~~~~~~~~~~---~~~g~n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~afgVPp~~lg~~~~~~~~e~ 289 (406) T protein:vir:97 213 GDARQRARQEFEK---MREGSVGGSPLVFDSTMEYTPLEIDTNVLQLITSNNFSTAQIAKALRVPSYKLGVNSPNQSVAQ 289 (406) T ss_pred HHHHHHHHHHHHH---HhcccccCceeecCCCceEEEccCCHHHHHHHHHHHhhHHHHHHHhCCCHHHcCCCCCcchHHH Confidence 0000000111110 11110000 233344555555455667777777788899999999999975333221111 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCC Q lcl|Aclame:pro 390 EIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIP 469 (517) Q Consensus 390 ei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S 469 (517) .. ...++.+|.-++..|..-.+. .++....... ..|.|+- ..+....++...+++.+|+|+ T Consensus 290 ~~--------------~~f~~~~l~P~~~~ie~~l~~-kll~~~~~~~--~~i~fd~--~~~~~~~~~~~~~~~~~g~~T 350 (406) T protein:vir:97 290 LM--------------EDYVTNDLPFYFDAITSELGL-KTLNDKDRRL--YHIEFDT--RSVTGRNVDEIVKLVNNQILT 350 (406) T ss_pred HH--------------HHHHHHHHHHHHHHHHHHHhh-hhcChhhccc--eeEEEec--CccchhhHHHHHHHHhCCCcC Confidence 11 111223333333322221111 1222221222 3344432 234455566677888999999 Q ss_pred HHHHHHhhCCCC---HHHHHHHHHHH---HHhccccCCCC-CccccCCCCCCCCC Q lcl|Aclame:pro 470 TVEAIQRIFKVP---KKTAEQWLEEI---RKDQIELDPVT-ISQRAQKRMFGDEE 517 (517) Q Consensus 470 ~~~~l~~~~~~~---eeea~~el~~i---~~E~~~~~~~~-~~~~~~~~~~G~ee 517 (517) .-+++.++ |+. +...++-+-.. ..+..+ ++.. .......|.+++++ T Consensus 351 ~NE~R~~~-g~~p~~~~~gD~~~~~~n~~~~~~~~-~~~~~~~~~~~gg~~~~~~ 403 (406) T protein:vir:97 351 PNQGLVEL-GKQKSTDPNMDRYQSSLNYVFLDKKE-EYQDKVGIKGKGGEVNAEE 403 (406) T ss_pred HHHHHHHh-CCCCCCCCCCCeEeeccCccchhccc-ccccccccccCCCCCCCCC Confidence 99977654 433 22121111100 001100 0000 00111111111222 No 225 >protein:vir:100650 Length: 395 # NCBI annotation: 77ORF008 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1476 # MgeName: 77 # Cross-refs: genbank:acc:NP_958604;genbank:gi:41189523;genbank:GeneID:2743796 Probab=94.46 E-value=0.0043 Score=33.53 Aligned_cols=365 Identities=9% Similarity=0.052 Sum_probs=120.1 Q ss_pred hhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCcccccccccc----ChHHHHHHHHhhhhcCCcce Q lcl|Aclame:pro 18 LSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTL----NLRKLSADVLSGLVFNEQCE 93 (517) Q Consensus 18 ~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~l----n~~~~i~~~~A~ll~~e~~~ 93 (517) |++ +..+..... . ...|..|..+. .++ .+..... ..-..||+..|++ +.. T Consensus 1 Mg~--f~~lf~~~~-~--------~~~~~~~~~~~--~v~---------~~~~~~~~~v~~~i~~Ia~~iA~~----p~~ 54 (395) T protein:vir:10 1 MSI--LEKIFKTRK-D--------ITYMLDLDMIE--DLS---------QQAYVKRLAIDSCIEFVARAVAQS----HFK 54 (395) T ss_pred Cch--hhhhhccCc-c--------ccccccchhcc--ccc---------hhhhhhhHHHHHHHHHHHHhhccc----eeE Confidence 111 111111110 0 01111111111 000 0000111 1124556666653 211 Q ss_pred eEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeCCeeEEEEEcCCeEEEEEEcCCce Q lcl|Aclame:pro 94 VYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDNGEIEFSWALANAFYPLRSNSNGI 173 (517) Q Consensus 94 i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~g~~~i~~v~a~~~~P~~~~~~~~ 173 (517) +.-.+. .........|..-=...-=...+.+.+...+.+||.++....+++.+ +|+.. -.. T Consensus 55 ~~~~~~-------~~~~~~~~ll~~~PN~~~t~~~f~~~~~~~lll~g~~~~~~~~~~~~----------~~~~~--~~~ 115 (395) T protein:vir:10 55 VLEGNR-------IQKNDVYYKLNIKPNTDLSSDSFWQQVIYKLIYDNEVLIVVSDSKEL----------LIADS--FYR 115 (395) T ss_pred eccCCc-------cccchHHHHHHhccCcCCCHHHHHHHHHHHHhhCCceEEEEecCCCe----------EecCC--ccc Confidence 111111 11112222222100001112233344444556666666544344331 22100 000 Q ss_pred EEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccccCCCCcceEEcCCCcceE Q lcl|Aclame:pro 174 SEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLF 253 (517) Q Consensus 174 ~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f 253 (517) ... ...+ . .|....+. .|.+. ..++ +.+ + T Consensus 116 ~~~-------~~~~-~--~~~~~~~~----------~~~~~-------------~~~~--------~~e----------v 144 (395) T protein:vir:10 116 EEY-------ALYD-D--IFKDVTVK----------DYTYQ-------------RTFT--------MQE----------V 144 (395) T ss_pred eeE-------eecC-c--ceeEEEEc----------Cceee-------------eeec--------ccc----------E Confidence 000 0000 0 00000000 00000 0011 011 1 Q ss_pred EEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeec--chHHhccCCCCcccccCccCCcccce Q lcl|Aclame:pro 254 NYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRTVFV--SDVMLRTVPDESGMPPPQVFDPDVNV 331 (517) Q Consensus 254 ~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v--~~~~l~~~~~~~~~~~~~~fd~~~~~ 331 (517) +||+.+.+... .+|.|.+..+..+++.... .+. ..+.++-++ +...+. +.........|+ .. T Consensus 145 ih~~~~~~~~~----~~G~spi~~~~~~~~~~~~---~~~---~~~~~~gii~~~~~~~~---~e~~~~~~~~~~---~~ 208 (395) T protein:vir:10 145 IYLKYNNNKVT----HFVESLFEDYGKIFGRMIG---AQL---KNYQIRGILKSASSAYD---EKNIEKLQAFTN---KL 208 (395) T ss_pred EEEccCCCCcc----cccchHHHHHHHHHHHHHH---HHH---hcCCCceEEEeCCCCCC---HHHHHHHHHHHH---HH Confidence 22222112221 2467766655555443322 221 344433332 111110 000000000010 11 Q ss_pred eeeecCC-------CCCCcceEEecc-----cChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHHHHHHHHHH Q lcl|Aclame:pro 332 YKSIRMG-------TDEEFVKDVTHD-----IRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVSENDLTY 399 (517) Q Consensus 332 y~~~~~~-------~~~~~v~~~~~d-----ir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a~~~~~~ 399 (517) +.+.+.+ +++..++.++.. ....++.+..+...++|+...|++|..++-. ..++. .....++ T Consensus 209 ~~~~~~~~~~v~~l~~g~~~~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~f~VPp~~l~~~---~sn~e---~~~~~~~ 282 (395) T protein:vir:10 209 FNTFNKNQLAIAPLIEGFDYEELSNGGKNSNMPFSELSELMRDAIKNVALMIGIPPGLIYGE---TADLE---KNTLVFE 282 (395) T ss_pred hccccccCcceEEcCCCceeeeccccccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhcCc---ccCHH---HHHHHHH Confidence 1111110 111122222211 2233677777777888999999999988521 11111 1111122 Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCCHHHHHHhhC Q lcl|Aclame:pro 400 R-TRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTVEAIQRIF 478 (517) Q Consensus 400 ~-t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~~~l~~~~ 478 (517) . ++.-+...++.+|.. .++.... -...+.++++.-+..|..+.++....++.+|+|+.-+++... T Consensus 283 ~~~l~P~~~~ie~~l~~------------kL~~~~~-~~~~~~f~~~~l~~~D~~~~~~~~~~~~~~G~lt~NE~R~~~- 348 (395) T protein:vir:10 283 KFCLTPLLKKIQNELNA------------KLITQSM-YLKDTRIEIVGVNKKDPLQYAEAIDKLVSSGSFTRNEVRIML- 348 (395) T ss_pred HHHHHHHHHHHHHHHHH------------hhcChhh-hcccceecchhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHh- Confidence 1 222222222222221 1111110 011245666666678888889888999999999999976543 Q ss_pred CCC---HHHHHHHHHHH---HHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 479 KVP---KKTAEQWLEEI---RKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 479 ~~~---eeea~~el~~i---~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) |+. +.++++-+-.. ..+..+..... ......-|+|+ T Consensus 349 g~~p~~~g~~d~~~~~~n~~~~~~~~~~~~~---~~~~~~kgg~~ 390 (395) T protein:vir:10 349 GEEPSDNPELDEYLITKNYEKANSGENDEKE---KDENTLKGGDE 390 (395) T ss_pred CCCCCCCCCCceeeeccccccccccccccCc---ccccccCCCCC Confidence 543 32222211100 00111111111 11111122222 No 226 >protein:vir:9507 Length: 395 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:170 # MgeName: phiN315 # Cross-refs: genbank:acc:NP_835554;genbank:gi:30043953;genbank:GeneID:1260535 Probab=94.46 E-value=0.0043 Score=33.53 Aligned_cols=365 Identities=9% Similarity=0.052 Sum_probs=120.1 Q ss_pred hhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCcccccccccc----ChHHHHHHHHhhhhcCCcce Q lcl|Aclame:pro 18 LSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTL----NLRKLSADVLSGLVFNEQCE 93 (517) Q Consensus 18 ~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~l----n~~~~i~~~~A~ll~~e~~~ 93 (517) |++ +..+..... . ...|..|..+. .++ .+..... ..-..||+..|++ +.. T Consensus 1 Mg~--f~~lf~~~~-~--------~~~~~~~~~~~--~v~---------~~~~~~~~~v~~~i~~Ia~~iA~~----p~~ 54 (395) T protein:vir:95 1 MSI--LEKIFKTRK-D--------ITYMLDLDMIE--DLS---------QQAYVKRLAIDSCIEFVARAVAQS----HFK 54 (395) T ss_pred Cch--hhhhhccCc-c--------ccccccchhcc--ccc---------hhhhhhhHHHHHHHHHHHHhhccc----eeE Confidence 111 111111110 0 01111111111 000 0000111 1124556666653 211 Q ss_pred eEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeCCeeEEEEEcCCeEEEEEEcCCce Q lcl|Aclame:pro 94 VYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDNGEIEFSWALANAFYPLRSNSNGI 173 (517) Q Consensus 94 i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~g~~~i~~v~a~~~~P~~~~~~~~ 173 (517) +.-.+. .........|..-=...-=...+.+.+...+.+||.++....+++.+ +|+.. -.. T Consensus 55 ~~~~~~-------~~~~~~~~ll~~~PN~~~t~~~f~~~~~~~lll~g~~~~~~~~~~~~----------~~~~~--~~~ 115 (395) T protein:vir:95 55 VLEGNR-------IQKNDVYYKLNIKPNTDLSSDSFWQQVIYKLIYDNEVLIVVSDSKEL----------LIADS--FYR 115 (395) T ss_pred eccCCc-------cccchHHHHHHhccCcCCCHHHHHHHHHHHHhhCCceEEEEecCCCe----------EecCC--ccc Confidence 111111 11112222222100001112233344444556666666544344331 22100 000 Q ss_pred EEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccccCCCCcceEEcCCCcceE Q lcl|Aclame:pro 174 SEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLF 253 (517) Q Consensus 174 ~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f 253 (517) ... ...+ . .|....+. .|.+. ..++ +.+ + T Consensus 116 ~~~-------~~~~-~--~~~~~~~~----------~~~~~-------------~~~~--------~~e----------v 144 (395) T protein:vir:95 116 EEY-------ALYD-D--IFKDVTVK----------DYTYQ-------------RTFT--------MQE----------V 144 (395) T ss_pred eeE-------eecC-c--ceeEEEEc----------Cceee-------------eeec--------ccc----------E Confidence 000 0000 0 00000000 00000 0011 011 1 Q ss_pred EEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeec--chHHhccCCCCcccccCccCCcccce Q lcl|Aclame:pro 254 NYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRTVFV--SDVMLRTVPDESGMPPPQVFDPDVNV 331 (517) Q Consensus 254 ~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v--~~~~l~~~~~~~~~~~~~~fd~~~~~ 331 (517) +||+.+.+... .+|.|.+..+..+++.... .+. ..+.++-++ +...+. +.........|+ .. T Consensus 145 ih~~~~~~~~~----~~G~spi~~~~~~~~~~~~---~~~---~~~~~~gii~~~~~~~~---~e~~~~~~~~~~---~~ 208 (395) T protein:vir:95 145 IYLKYNNNKVT----HFVESLFEDYGKIFGRMIG---AQL---KNYQIRGILKSASSAYD---EKNIEKLQAFTN---KL 208 (395) T ss_pred EEEccCCCCcc----cccchHHHHHHHHHHHHHH---HHH---hcCCCceEEEeCCCCCC---HHHHHHHHHHHH---HH Confidence 22222112221 2467766655555443322 221 344433332 111110 000000000010 11 Q ss_pred eeeecCC-------CCCCcceEEecc-----cChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHHHHHHHHHH Q lcl|Aclame:pro 332 YKSIRMG-------TDEEFVKDVTHD-----IRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVSENDLTY 399 (517) Q Consensus 332 y~~~~~~-------~~~~~v~~~~~d-----ir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a~~~~~~ 399 (517) +.+.+.+ +++..++.++.. ....++.+..+...++|+...|++|..++-. ..++. .....++ T Consensus 209 ~~~~~~~~~~v~~l~~g~~~~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~f~VPp~~l~~~---~sn~e---~~~~~~~ 282 (395) T protein:vir:95 209 FNTFNKNQLAIAPLIEGFDYEELSNGGKNSNMPFSELSELMRDAIKNVALMIGIPPGLIYGE---TADLE---KNTLVFE 282 (395) T ss_pred hccccccCcceEEcCCCceeeeccccccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhcCc---ccCHH---HHHHHHH Confidence 1111110 111122222211 2233677777777888999999999988521 11111 1111122 Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCCHHHHHHhhC Q lcl|Aclame:pro 400 R-TRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTVEAIQRIF 478 (517) Q Consensus 400 ~-t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~~~l~~~~ 478 (517) . ++.-+...++.+|.. .++.... -...+.++++.-+..|..+.++....++.+|+|+.-+++... T Consensus 283 ~~~l~P~~~~ie~~l~~------------kL~~~~~-~~~~~~f~~~~l~~~D~~~~~~~~~~~~~~G~lt~NE~R~~~- 348 (395) T protein:vir:95 283 KFCLTPLLKKIQNELNA------------KLITQSM-YLKDTRIEIVGVNKKDPLQYAEAIDKLVSSGSFTRNEVRIML- 348 (395) T ss_pred HHHHHHHHHHHHHHHHH------------hhcChhh-hcccceecchhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHh- Confidence 1 222222222222221 1111110 011245666666678888889888999999999999976543 Q ss_pred CCC---HHHHHHHHHHH---HHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 479 KVP---KKTAEQWLEEI---RKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 479 ~~~---eeea~~el~~i---~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) |+. +.++++-+-.. ..+..+..... ......-|+|+ T Consensus 349 g~~p~~~g~~d~~~~~~n~~~~~~~~~~~~~---~~~~~~kgg~~ 390 (395) T protein:vir:95 349 GEEPSDNPELDEYLITKNYEKANSGENDEKE---KDENTLKGGDE 390 (395) T ss_pred CCCCCCCCCCceeeeccccccccccccccCc---ccccccCCCCC Confidence 543 32222211100 00111111111 11111122222 No 227 >protein:vir:101289 Length: 395 # NCBI annotation: phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1591 # MgeName: phiNM3 # Cross-refs: genbank:acc:YP_908829;genbank:gi:118725093;genbank:GeneID:4555860 Probab=94.46 E-value=0.0043 Score=33.53 Aligned_cols=365 Identities=9% Similarity=0.052 Sum_probs=120.1 Q ss_pred hhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCcccccccccc----ChHHHHHHHHhhhhcCCcce Q lcl|Aclame:pro 18 LSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTL----NLRKLSADVLSGLVFNEQCE 93 (517) Q Consensus 18 ~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~l----n~~~~i~~~~A~ll~~e~~~ 93 (517) |++ +..+..... . ...|..|..+. .++ .+..... ..-..||+..|++ +.. T Consensus 1 Mg~--f~~lf~~~~-~--------~~~~~~~~~~~--~v~---------~~~~~~~~~v~~~i~~Ia~~iA~~----p~~ 54 (395) T protein:vir:10 1 MSI--LEKIFKTRK-D--------ITYMLDLDMIE--DLS---------QQAYVKRLAIDSCIEFVARAVAQS----HFK 54 (395) T ss_pred Cch--hhhhhccCc-c--------ccccccchhcc--ccc---------hhhhhhhHHHHHHHHHHHHhhccc----eeE Confidence 111 111111110 0 01111111111 000 0000111 1124556666653 211 Q ss_pred eEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeCCeeEEEEEcCCeEEEEEEcCCce Q lcl|Aclame:pro 94 VYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDNGEIEFSWALANAFYPLRSNSNGI 173 (517) Q Consensus 94 i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~g~~~i~~v~a~~~~P~~~~~~~~ 173 (517) +.-.+. .........|..-=...-=...+.+.+...+.+||.++....+++.+ +|+.. -.. T Consensus 55 ~~~~~~-------~~~~~~~~ll~~~PN~~~t~~~f~~~~~~~lll~g~~~~~~~~~~~~----------~~~~~--~~~ 115 (395) T protein:vir:10 55 VLEGNR-------IQKNDVYYKLNIKPNTDLSSDSFWQQVIYKLIYDNEVLIVVSDSKEL----------LIADS--FYR 115 (395) T ss_pred eccCCc-------cccchHHHHHHhccCcCCCHHHHHHHHHHHHhhCCceEEEEecCCCe----------EecCC--ccc Confidence 111111 11112222222100001112233344444556666666544344331 22100 000 Q ss_pred EEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccccCCCCcceEEcCCCcceE Q lcl|Aclame:pro 174 SEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLF 253 (517) Q Consensus 174 ~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f 253 (517) ... ...+ . .|....+. .|.+. ..++ +.+ + T Consensus 116 ~~~-------~~~~-~--~~~~~~~~----------~~~~~-------------~~~~--------~~e----------v 144 (395) T protein:vir:10 116 EEY-------ALYD-D--IFKDVTVK----------DYTYQ-------------RTFT--------MQE----------V 144 (395) T ss_pred eeE-------eecC-c--ceeEEEEc----------Cceee-------------eeec--------ccc----------E Confidence 000 0000 0 00000000 00000 0011 011 1 Q ss_pred EEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeec--chHHhccCCCCcccccCccCCcccce Q lcl|Aclame:pro 254 NYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRTVFV--SDVMLRTVPDESGMPPPQVFDPDVNV 331 (517) Q Consensus 254 ~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v--~~~~l~~~~~~~~~~~~~~fd~~~~~ 331 (517) +||+.+.+... .+|.|.+..+..+++.... .+. ..+.++-++ +...+. +.........|+ .. T Consensus 145 ih~~~~~~~~~----~~G~spi~~~~~~~~~~~~---~~~---~~~~~~gii~~~~~~~~---~e~~~~~~~~~~---~~ 208 (395) T protein:vir:10 145 IYLKYNNNKVT----HFVESLFEDYGKIFGRMIG---AQL---KNYQIRGILKSASSAYD---EKNIEKLQAFTN---KL 208 (395) T ss_pred EEEccCCCCcc----cccchHHHHHHHHHHHHHH---HHH---hcCCCceEEEeCCCCCC---HHHHHHHHHHHH---HH Confidence 22222112221 2467766655555443322 221 344433332 111110 000000000010 11 Q ss_pred eeeecCC-------CCCCcceEEecc-----cChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHHHHHHHHHH Q lcl|Aclame:pro 332 YKSIRMG-------TDEEFVKDVTHD-----IRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVSENDLTY 399 (517) Q Consensus 332 y~~~~~~-------~~~~~v~~~~~d-----ir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a~~~~~~ 399 (517) +.+.+.+ +++..++.++.. ....++.+..+...++|+...|++|..++-. ..++. .....++ T Consensus 209 ~~~~~~~~~~v~~l~~g~~~~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~f~VPp~~l~~~---~sn~e---~~~~~~~ 282 (395) T protein:vir:10 209 FNTFNKNQLAIAPLIEGFDYEELSNGGKNSNMPFSELSELMRDAIKNVALMIGIPPGLIYGE---TADLE---KNTLVFE 282 (395) T ss_pred hccccccCcceEEcCCCceeeeccccccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhcCc---ccCHH---HHHHHHH Confidence 1111110 111122222211 2233677777777888999999999988521 11111 1111122 Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCCHHHHHHhhC Q lcl|Aclame:pro 400 R-TRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTVEAIQRIF 478 (517) Q Consensus 400 ~-t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~~~l~~~~ 478 (517) . ++.-+...++.+|.. .++.... -...+.++++.-+..|..+.++....++.+|+|+.-+++... T Consensus 283 ~~~l~P~~~~ie~~l~~------------kL~~~~~-~~~~~~f~~~~l~~~D~~~~~~~~~~~~~~G~lt~NE~R~~~- 348 (395) T protein:vir:10 283 KFCLTPLLKKIQNELNA------------KLITQSM-YLKDTRIEIVGVNKKDPLQYAEAIDKLVSSGSFTRNEVRIML- 348 (395) T ss_pred HHHHHHHHHHHHHHHHH------------hhcChhh-hcccceecchhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHh- Confidence 1 222222222222221 1111110 011245666666678888889888999999999999976543 Q ss_pred CCC---HHHHHHHHHHH---HHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 479 KVP---KKTAEQWLEEI---RKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 479 ~~~---eeea~~el~~i---~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) |+. +.++++-+-.. ..+..+..... ......-|+|+ T Consensus 349 g~~p~~~g~~d~~~~~~n~~~~~~~~~~~~~---~~~~~~kgg~~ 390 (395) T protein:vir:10 349 GEEPSDNPELDEYLITKNYEKANSGENDEKE---KDENTLKGGDE 390 (395) T ss_pred CCCCCCCCCCceeeeccccccccccccccCc---ccccccCCCCC Confidence 543 32222211100 00111111111 11111122222 No 228 >protein:vir:99853 Length: 488 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1480 # MgeName: B3 # Cross-refs: genbank:acc:YP_164068;genbank:gi:56692600;genbank:GeneID:3192581 Probab=94.33 E-value=0.0047 Score=33.34 Aligned_cols=382 Identities=12% Similarity=0.067 Sum_probs=162.9 Q ss_pred HHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccc-------cccCcccc-cccc-ccChHHHHHH Q lcl|Aclame:pro 11 FKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYI-------NSQGKIQE-RDYM-TLNLRKLSAD 81 (517) Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~-------~~~~~~~~-~~~~-~ln~~~~i~~ 81 (517) ++|- ++.. ....+..++.++.+-+..+..- +..|.... +... -.-+...+ . T Consensus 1 v~~~------------------~l~~-e~at~~~~~d~~~~~~~~l~~~~~~il~~a~~g~~~~y~~l~~D~~i~s~l-~ 60 (488) T protein:vir:99 1 MEKP------------------ALGR-EIATSGDGRDITRPFISGLQVPNDSILQRRGGNDLRVYEEILSDAQVKTVW-G 60 (488) T ss_pred CCcc------------------chhH-HHHHHHhhhhhhccccCCCCCCChHHHHhhccCCHHHHHHHhhChHHHHHH-H Confidence 1100 0111 1122334444444322222110 00010000 0000 00111111 2 Q ss_pred HHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe--CCee---EEE Q lcl|Aclame:pro 82 VLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD--NGEI---EFS 156 (517) Q Consensus 82 ~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d--~g~~---~i~ 156 (517) +.-.-|.+-+-.|.-.+. +.......+++.+.|++-.|...+.+++ +|...|-.++-..|. +|.. ++. T Consensus 61 ~rk~av~~~~w~i~p~~~------~~~~~~~ae~v~~~l~~~~~~~~l~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~ 133 (488) T protein:vir:99 61 QRQLAVVSREWKVEAGGD------RPIDQAAAEHLEQQLQRVGWDRVTSKML-FGVFYGYAVSELIYGRDDRYITLEAIK 133 (488) T ss_pred HHHHHHhcCCceEEcCCC------ChHHHHHHHHHHHHHhCCCHHHHHHHHH-hhhhhcceeEEEEEeecCCeeeEeeee Confidence 222345554444432211 2233556788999998878888887776 688899999988885 3332 233 Q ss_pred EEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCccccccccc Q lcl|Aclame:pro 157 WALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELY 236 (517) Q Consensus 157 ~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~ 236 (517) ++++..|.+ +.+ +. .++ ...+...-|.++| T Consensus 134 ~r~~~~f~~---d~~-----------------~~--------------------l~~-----~~~~~~~~g~~lp----- 163 (488) T protein:vir:99 134 VRNRRRFRY---DQD-----------------GG--------------------LRL-----LTPNNMFEGEPCP----- 163 (488) T ss_pred eecccceee---cCC-----------------Cc--------------------eEE-----eccCCCCCccccc----- Confidence 333332221 100 00 000 0000000022211 Q ss_pred CCCCcceEEcCCCcc-eEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHH-HhccceeecchHHhccCC Q lcl|Aclame:pro 237 EGMQEKTYIQGLSRP-LFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEI-KMGQRTVFVSDVMLRTVP 314 (517) Q Consensus 237 ~~l~~~~~~~g~~~p-~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~-~~~~~~i~v~~~~l~~~~ 314 (517) .| .|++.. .+...++|+|.|.+..|--..--=+..+..|+.-+ +.|-|..++ +... T Consensus 164 -------------~~~~~i~~~----~~~~~g~p~g~gLl~~~~w~~~fK~~~~~~w~~f~E~yG~P~~ig-----ky~~ 221 (488) T protein:vir:99 164 -------------APYFWHFST----GADNDDEPYGLGLAHWLYWPVFFKRNGIKFWLIFLDKFGMPTAVG-----RYDD 221 (488) T ss_pred -------------cCceEEEEe----ecCCCCCcccchHHHHHHHHHHHHHhhHHHHHHHHHHcCCceeee-----ecCC Confidence 11 111111 11234789999999988765333333444454444 456665443 1111 Q ss_pred CCcccccCccCCcccceeeee---cCC-----CCCCcceEEecc-cChHHHHHHHHHHHHHHHHHhCCCccccccC-CCc Q lcl|Aclame:pro 315 DESGMPPPQVFDPDVNVYKSI---RMG-----TDEEFVKDVTHD-IRTEQYKEAINQALRTLEMELKLSVGTFSFD-GRS 384 (517) Q Consensus 315 ~~~~~~~~~~fd~~~~~y~~~---~~~-----~~~~~v~~~~~d-ir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~-~~~ 384 (517) .+..... ...+..++ ..+ ..+..|+.++.. -..+.|.+.++.+=++|+ ++-++ +|++-+ ++| T Consensus 222 ~~a~~~e------k~~l~~av~~~~~~~~~viP~~~~ie~~ea~~~~~~~~~~li~~~d~~Is-k~iLG-qtlts~~~~G 293 (488) T protein:vir:99 222 KTATPED------KAKLLAALHAIQTDSAIIMPAGMQAELLEAGRSGTADYKTLHDTMDATIA-KVGLG-QVASTQGTPG 293 (488) T ss_pred CCCCHHH------HHHHHHHHHHHhcCcEEEecCCceeEEeecCCCChHHHHHHHHHHHHHHH-HHHhh-hhhccccccc Confidence 1111000 11111111 111 122345666543 233445666665555553 33344 444322 222 Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHH Q lcl|Aclame:pro 385 MKTATEIVSENDLTYRTRNDHVYEVEQFIK-GLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAK 463 (517) Q Consensus 385 ~~TAtei~a~~~~~~~t~~~~~~~~~~al~-~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~ 463 (517) .-.+.++-. .-....+..-.+.+...|. +|++.++.+ ++ +. .....+.|+..-.+|..+.++.+.+++ T Consensus 294 s~a~~~vh~--~v~~d~~~aDa~~i~~tln~~li~~l~~~----N~-~~----~~~p~~~~~~~e~edl~~~a~~~~~l~ 362 (488) T protein:vir:99 294 RLGNDDLQA--DVRLDLVKADADLICESFNLGPARWLTEW----NF-PG----AQPPRVYRVIEEPEDITAKAERDEKVF 362 (488) T ss_pred chhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHh----Cc-CC----cCCceeEecCCCcccHHHHHHHHHHHH Confidence 211112211 1223344455677777775 587766654 22 11 122445666667788888899999998 Q ss_pred hc-CCCCHHHHHHhhCCCCHHHHHHHHHHHHHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 464 TF-GFIPTVEAIQRIFKVPKKTAEQWLEEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 464 ~~-G~~S~~~~l~~~~~~~eeea~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) .. |+--.+.++++.+|++.++-.+++. ...|..............+. T Consensus 363 ~~~G~~i~~~~i~e~~Gip~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 410 (488) T protein:vir:99 363 RMSGFRPTRGYVQETYGVEVESTQAEAT-------APTPSTEFAEGDQPSDPAAA 410 (488) T ss_pred hhcCCCCCHHHHHHHcCCCCcccccccc-------cCCCcccCCCCCCCCCchHH Confidence 85 8755677899999987653222211 11111000000000000000 No 229 >protein:vir:96579 Length: 576 # NCBI annotation: ORF012 # Family: family:all:2446 # MgeID: mge:1623 # MgeName: Twort # Cross-refs: genbank:acc:YP_238542;genbank:gi:66391267;genbank:GeneID:5130361 Probab=94.22 E-value=0.005 Score=33.18 Aligned_cols=444 Identities=11% Similarity=0.067 Sum_probs=159.1 Q ss_pred hHHHHHHHHHHHHHHhh---cccchhhhccccCcCCHHHHHHHHHHHHH---------------hcCCCcccccc-cccC Q lcl|Aclame:pro 3 VIQRIKNFFKRGGYALS---GQTLKSINDHEKINIDPNELARIERNLRQ---------------YEGDYPQVEYI-NSQG 63 (517) Q Consensus 3 ~~~~ik~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~i~~~~~~---------------Y~g~~~~~~~~-~~~~ 63 (517) |+.++-++|.+...-.. +-....+.|..+..+.--....-...+.. +.|...+..+. .... T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~~~~~~~~~~~~p~~~~~~ 80 (576) T protein:vir:96 1 MVTRLADIFKRLRLGRDYEDIIDTVPIDDGLQANIRNIEEKSKELNKSLYGKQQAYAEPFLEVMDTNPEFRTKRSYMKNS 80 (576) T ss_pred ChhhHHHHHHHHhccCccccchhhhhcccChhHHHHHhhhhhhhhccccCCccchhhcceeeeeecCCCccccCcchhhh Confidence 55555555543331000 00011111111111100000000000011 11110000000 0000 Q ss_pred c-ccc--ccccccChHHHHHHHHhhhhcC--Cc---------ceeEecCcc---cccccccchhHHHHHHHHHHhh---- Q lcl|Aclame:pro 64 K-IQE--RDYMTLNLRKLSADVLSGLVFN--EQ---------CEVYVSDAK---DEEKKDNSFKTAHEFIQHVFQH---- 122 (517) Q Consensus 64 ~-~~~--~~~~~ln~~~~i~~~~A~ll~~--e~---------~~i~~~~~~---~~~~~~~~~~~~~~~l~~~l~~---- 122 (517) . ... +.....++...+++..|+.+.. .+ ..|..-+.. +.+.. .....+..+|...+.. T Consensus 81 ~~~~~~l~~~~~npiv~~~I~~ia~~vA~~~~~~~~~~~~~~~~i~lk~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~p~ 159 (576) T protein:vir:96 81 DNLHDVLKQFGNNPILNAIILTRSNQVAMYCQPSRYNERGLGFEVRMRDLDAEPGKKEK-EEIKRIENFILNTGRDKDID 159 (576) T ss_pred hhhHHHHHHhhcCHHHHHHHHHHHHHHHhhhhhhhhccccccceeEEecCcCccchhhh-HhhhhHHhhHhhccCCCCCc Confidence 0 000 0000012223333333332221 11 111111111 00000 0011112223222211 Q ss_pred -hhHHHHHHHHHHHHHhhCCEEEEEEEeC---Ce-eEEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEE Q lcl|Aclame:pro 123 -NKFIKNLSDYLEPTFALGGLTVRPYVDN---GE-IEFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLE 197 (517) Q Consensus 123 -n~f~~~~~~~~~~a~~~G~~~~k~~~d~---g~-~~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE 197 (517) ..+..-++.++.+.+..|.+++.+.++. |+ ..+..++|+.+.++...++... +... T Consensus 160 ~~t~~~f~~~lv~dlll~Gna~~~i~~~rd~~g~~~~L~pl~p~~V~v~~~~dg~~~-------------------~~~~ 220 (576) T protein:vir:96 160 RDSFQSFCRKIVRDTYTYDQVNFEKVFNKKNATTMDKFIAVDPSTIFYATDKNGKII-------------------KGGK 220 (576) T ss_pred cccHHHHHHHHHHHHHhcCCeEEEEEEecCCCCceEEEEEeCCceeEEEECCCCcee-------------------eeee Confidence 1244556667777888999998887752 33 3567788888877533322211 1111 Q ss_pred EEeecceeeccceEEEEEEEeecCCccccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhh Q lcl|Aclame:pro 198 FHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDN 277 (517) Q Consensus 198 ~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~ 277 (517) ++.. +..+.. ...++ +.++ +.++++|.++ ....++|+|.+.- T Consensus 221 ~~~~----------------~~~~~~---~~~~~--------~~di---------i~~~~~~~~d--~~~~~~G~Spi~~ 262 (576) T protein:vir:96 221 RFVQ----------------VINKKV---VASFT--------SREM---------AMGIRNPRTE--LSSSGYGLSEVEI 262 (576) T ss_pred EEEE----------------ecCCce---EEEec--------ccce---------EEEeecCCCC--cccCcccccHHHH Confidence 1000 000000 00000 0011 1122222221 1235689999988 Q ss_pred hHHHHHHHHHHHHHHHHHHHhc-cceeec--chHHhccCCCCcccccCccCCcccceeeeec-------CCCCCCcceEE Q lcl|Aclame:pro 278 SVSTLKKINDTYDQFWWEIKMG-QRTVFV--SDVMLRTVPDESGMPPPQVFDPDVNVYKSIR-------MGTDEEFVKDV 347 (517) Q Consensus 278 ~~~lid~lD~~~s~~~~e~~~~-~~~i~v--~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~-------~~~~~~~v~~~ 347 (517) +...|......-.-..+-|+.| .+.-++ |... ...+..-......|. ..|.+.. .-+++-.++.+ T Consensus 263 a~~~i~~~~~~~~~~~~~f~Ng~~p~giL~~~~~~--~ls~e~~~~lr~~~~---~~~~G~~nag~~p~vl~~G~~~~~l 337 (576) T protein:vir:96 263 AMKQFIAYNNTETFNDRFFSHGGTTRGILQIKSEQ--QQSQRALENFKREWK---SSFSGINGSWQVPVVMADDIKFVNM 337 (576) T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCC--CCCHHHHHHHHHHHH---HHhccccccccceeecCCCceEEec Confidence 8877765544433334445654 444222 2111 000000000001110 0111110 01223345556 Q ss_pred ecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhh Q lcl|Aclame:pro 348 THDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVSENDLTYRTRN-DHVYEVEQFIKGLVISVLELAKT 426 (517) Q Consensus 348 ~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a~~~~~~~t~~-~~~~~~~~al~~li~~il~~~~~ 426 (517) +......++.+..+...+.|+...|++|..+|+...+..+++..... .++..+. ..+..++.+|.-++..|....+. T Consensus 338 s~~~~d~qfle~~~~~~~~Ia~afgVPp~~lG~~~~~~~~g~~~~~s--~t~sn~e~~~~~f~~~tL~P~~~~ie~~ln~ 415 (576) T protein:vir:96 338 TPTANDMQFEKWLTYLINIISALYGIDPAEIGFPNRGGATGGKGGNT--LNEADPGKKQQQSQNKGLQPLLRFIEDLINT 415 (576) T ss_pred cCChhhHHHHHHHHHhHHHHHHHhCCCHHHccccccccccccccccc--cccccHHHHHHHHHHHHHHHHHHHHHHHHHh Confidence 66667778888888889999999999999999865443322211110 0111111 12233444454444444332221 Q ss_pred hhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCCHHHHHHhhCCCCHHH-HHHHH-----HHHHH----h- Q lcl|Aclame:pro 427 YKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTVEAIQRIFKVPKKT-AEQWL-----EEIRK----D- 495 (517) Q Consensus 427 ~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~~~l~~~~~~~eee-a~~el-----~~i~~----E- 495 (517) .++.. ...++.+.|...-+.+..+.. .......+|+|+.-++++. .|+..-+ .+.-+ ..+-. + T Consensus 416 -~Ll~~---~~~~~~~~f~r~d~~~~~e~~-~~~~~~~~G~lT~NE~R~~-~gl~piegGD~~~~~~~~~~~~~~~~~~~ 489 (576) T protein:vir:96 416 -HIISE---YSDKYVFQFVGGDTKSELDKI-KILQEEVKTYKTVNEARKE-KGLKPIEGGDVLLDGSFIQSMSLNTQKEQ 489 (576) T ss_pred -hhchh---ccCceEEEeccCCHHHHHHHH-HHHHHHhcCccCHHHHHHH-hCCCCCCCcceeccccccccccccccCCC Confidence 12111 123467778765444433322 3334456799999886654 3442210 11000 00000 0 Q ss_pred ------c----------cccCCCCCcc-ccCCCCCCCCC Q lcl|Aclame:pro 496 ------Q----------IELDPVTISQ-RAQKRMFGDEE 517 (517) Q Consensus 496 ------~----------~~~~~~~~~~-~~~~~~~G~ee 517 (517) + ...++....+ .+.....|.+. T Consensus 490 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~g~~~ 528 (576) T protein:vir:96 490 YEDTKQKERFDMIQQFLNSPDDEEPQQESTEDKVDGRES 528 (576) T ss_pred CCCccccccccccccccCCCCCCCCCCCCCCCccccccc Confidence 0 0000000000 00011111111 No 230 >protein:vir:1431 Length: 419 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:30 # MgeName: phiE125 # Cross-refs: genbank:acc:NP_536360;genbank:gi:17975165;genbank:GeneID:929165 Probab=94.21 E-value=0.0051 Score=33.16 Aligned_cols=391 Identities=10% Similarity=0.048 Sum_probs=158.5 Q ss_pred HhhcccchhhhccccCcCCHHHHHHHHHHHH-HhcCCCcccccccccCcccc-ccccccCh----HHHHHHHHhhhhcCC Q lcl|Aclame:pro 17 ALSGQTLKSINDHEKINIDPNELARIERNLR-QYEGDYPQVEYINSQGKIQE-RDYMTLNL----RKLSADVLSGLVFNE 90 (517) Q Consensus 17 ~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~-~Y~g~~~~~~~~~~~~~~~~-~~~~~ln~----~~~i~~~~A~ll~~e 90 (517) |++........... .+++ .-|.. +..+....- +.... ...+.+.- -..||+..|+| T Consensus 1 ~~~~r~~~~~~~~~--~~~~------~~~~~~~~g~~~s~~------~~~vt~~~al~~~~v~~~v~~ia~~iA~l---- 62 (419) T protein:vir:14 1 MFFSRQLLSNLGQT--QMSA------GGWVSALLGSSRSDS------GQVVTPASALALTVLQNCVTLLAESIAQL---- 62 (419) T ss_pred Cccccccccccccc--ccCc------chhhHHhhcCCCccC------CcccchHHhhccHHHHHHHHHHHHhhccC---- Confidence 11111111111111 1111 12332 333322110 00000 01111111 14555655554 Q ss_pred cceeEecCcccccccccchhHHHHHHHHH-HhhhhHHHHHHHHHHHHHhhCCEEEEEEEe-CCee-EEEEEcCCeEEEEE Q lcl|Aclame:pro 91 QCEVYVSDAKDEEKKDNSFKTAHEFIQHV-FQHNKFIKNLSDYLEPTFALGGLTVRPYVD-NGEI-EFSWALANAFYPLR 167 (517) Q Consensus 91 ~~~i~~~~~~~~~~~~~~~~~~~~~l~~~-l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d-~g~~-~i~~v~a~~~~P~~ 167 (517) |..+.-.+.+... ......+...|..- -.......-.+..+...+..|.+++.+..+ +|.+ .+..++|+.+-+.. T Consensus 63 p~~~~~~~~~~~~--~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~~~~l~pl~~~~v~v~~ 140 (419) T protein:vir:14 63 PIELYERSGEDRK--PATDHPLYSILKYEPNSWQTPFEYQEQSQVAVGLRGNSYSFIDRDSDGVIQGLYPLDNEAVTVMR 140 (419) T ss_pred ceEEEEecCCccc--cccccHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEecCceEEEEE Confidence 3333221111111 11112222323210 000112222334466667778888877766 4554 46667777665531 Q ss_pred EcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccccCCCCcceEEcC Q lcl|Aclame:pro 168 SNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQG 247 (517) Q Consensus 168 ~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g 247 (517) +.++ ..+| ++. ... .++ .+ T Consensus 141 -~~~~-----------------~~~y------------------~~~-----~~~------~~~---------~~----- 159 (419) T protein:vir:14 141 -GSDL-----------------KPVY------------------RVR-----GSD------PMP---------QR----- 159 (419) T ss_pred -CCCc-----------------eEEE------------------EEc-----cCc------ccc---------hh----- Confidence 1111 1111 100 000 011 00 Q ss_pred CCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHh-ccceeecchHHhccCCCCcccccCcc-- Q lcl|Aclame:pro 248 LSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKM-GQRTVFVSDVMLRTVPDESGMPPPQV-- 324 (517) Q Consensus 248 ~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~-~~~~i~v~~~~l~~~~~~~~~~~~~~-- 324 (517) -+.+++.+.. +..+|+|.+.-+...|+.....-....+-|+. +++.-++ ......+....... T Consensus 160 ----~i~h~~~~~~-----dg~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil-----~~~~~~~~~~~~~~~~ 225 (419) T protein:vir:14 160 ----LVHHVRWMSI-----NGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVI-----ERPKDAPALKDQASVD 225 (419) T ss_pred ----heeEecCcCC-----CCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEE-----EecCCCCcccCHHHHH Confidence 1234443211 23579999888887776555444333444565 4444443 11111111000000 Q ss_pred -CCcc-cceeeeec------CCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHHHHHHH Q lcl|Aclame:pro 325 -FDPD-VNVYKSIR------MGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVSEND 396 (517) Q Consensus 325 -fd~~-~~~y~~~~------~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a~~~ 396 (517) +... .+.|.+.. .-+++..++.++......++.+..+...+.|+...|++|..++...++..+. +.... T Consensus 226 ~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVpp~~lg~~~~~t~s~--~E~~~- 302 (419) T protein:vir:14 226 RITDGWNAKFGGSGNAKKVALLQEGMTFRPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSN--IEHQS- 302 (419) T ss_pred HHHHHHHHHhcCccccCCceecCCCceEEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhcCCCCCCccc--HHHHH- Confidence 0000 00111110 0012223444444434455667777777899999999999998654332211 11111 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCCHHHHHHh Q lcl|Aclame:pro 397 LTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTVEAIQR 476 (517) Q Consensus 397 ~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~~~l~~ 476 (517) +..++.+|.-++..|-...+. .++.......+.|.+++++-+..|..+.++...+++.+|+++.-+++.. T Consensus 303 ---------~~f~~~~L~P~~~~ie~~l~~-kll~~~~~~~~~i~fd~~~l~r~d~~~~~~~~~~~~~~G~~T~NE~R~~ 372 (419) T protein:vir:14 303 ---------LQFVIYTLLPWVKRHEQAKTR-DLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRL 372 (419) T ss_pred ---------HHHHHHHHHHHHHHHHHHHhh-hccCccccCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHH Confidence 122333333333333221111 2222222234556777767667789999999999999999999997654 Q ss_pred hCCCCHH-HHHHHHHHHHHhccccCCCC-CccccCCCCCCCCC Q lcl|Aclame:pro 477 IFKVPKK-TAEQWLEEIRKDQIELDPVT-ISQRAQKRMFGDEE 517 (517) Q Consensus 477 ~~~~~ee-ea~~el~~i~~E~~~~~~~~-~~~~~~~~~~G~ee 517 (517) .|+..- ..+.-+....- .....+.. ....+++..++.+| T Consensus 373 -~gl~p~~gGD~~~~~~n~-~~~~~~~~~~~~~~~~~~~~~~e 413 (419) T protein:vir:14 373 -ENMPPVKGGDIYLSPMNM-VDASKPQQLPVGKSEPTKAAIDE 413 (419) T ss_pred -hCCCCCCCcCeeeecccc-ccccccccccCCCCCCccccccc Confidence 455431 11111111000 00001100 01122333345555 No 231 >protein:vir:5665 Length: 511 # NCBI annotation: portal vertex protein of head # Family: family:all:1036 # MgeID: mge:119 # MgeName: KVP40 # Cross-refs: genbank:acc:NP_899604;genbank:gi:34419591;genbank:GeneID:2546036 Probab=94.16 E-value=0.0052 Score=33.10 Aligned_cols=412 Identities=12% Similarity=0.062 Sum_probs=194.5 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccChHHHHH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLRKLSA 80 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~~~i~ 80 (517) +..+ ... +.. .....+ .+-+++.+ +-|+++|.+-.. |.+. +.-..|+ T Consensus 39 ~~~~------~~~-g~~-----~~~~~~-~~~~~~~~--eLI~~YR~ma~~--pEvd----------------~Av~eIv 85 (511) T protein:vir:56 39 LLAP------QLG-HAI-----IPSDAQ-SEGTIPVK--ELIKSYRALAEY--HEVD----------------DAIQEIV 85 (511) T ss_pred cccc------eec-cee-----cccccc-ccCccchH--HHHHHHHHHhhc--cchh----------------hHHHHhh Confidence 1111 000 000 000000 01111222 566777766432 2221 0000111 Q ss_pred HHHh-hhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeC--CeeEEEE Q lcl|Aclame:pro 81 DVLS-GLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDN--GEIEFSW 157 (517) Q Consensus 81 ~~~A-~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~--g~~~i~~ 157 (517) ++.. .=-..+++++.+++... .+...++-.+..+.++.--+|.++..+....+.+.|..+||..+|+ |=..+.. T Consensus 86 ne~iv~d~~~~pV~l~ld~~~~---s~~iK~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fHkiid~k~GI~eLr~ 162 (511) T protein:vir:56 86 DEAIVYENDKEVVWLNLDNTDF---SENIKAKINEEFDRVVSLLQMRKHGYKWFRKWYVDSRIYFHKILDKDNNIIELRP 162 (511) T ss_pred cceeEecCCCceEEEEecccCc---chHHHHHHHHHHHHHHHHhccchhhhHHHhhhhhcceEEEEEEeccccceeehhh Confidence 1110 00112244455544321 1222234456667777777899999999999999999999999984 4455777 Q ss_pred EcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCcc-----------cc Q lcl|Aclame:pro 158 ALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEG-----------EI 226 (517) Q Consensus 158 v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~-----------~l 226 (517) ++|-++-++.---......+ ..++ .+.++.+|...+.. .- T Consensus 163 lDPr~i~~vr~i~~~~~~~~-------------~v~~----------------~~~ey~~Y~~~~~~~~~~~~~~~~~~~ 213 (511) T protein:vir:56 163 LNPMKMELVREIQKETIDGV-------------EVVK----------------GTLEYYVYKQSDYKMPSWMSATNRAQT 213 (511) T ss_pred cCcccchhhhhhhccccccc-------------cccc----------------ceeeeeEecCCCcccCccccccccccc Confidence 88888766522100000010 0000 01222233211100 01 Q ss_pred CcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHH---Hhcccee Q lcl|Aclame:pro 227 GKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEI---KMGQRTV 303 (517) Q Consensus 227 G~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~---~~~~~~i 303 (517) +..+|-+ .+++.. ++.+-. ....++.+|-+..|.-.+-.| +..-..+-.+ |.-.+|| T Consensus 214 ~vkI~~d--------aI~y~h-----SGL~d~------~~~~g~i~syLhkAiKp~NQL-km~EDAlVIYRitRAPeRRv 273 (511) T protein:vir:56 214 SFRIPKD--------AIVFAH-----SGLMRG------CADDPYIIGYLDRAIKPANQL-KMLEDALVIYRLARAPERRV 273 (511) T ss_pred ceeechh--------heeeec-----ccceec------cCCCCeeeccchhhhHHHHhh-HHHHhhHHHHhhhccccceE Confidence 1111111 111100 001100 013455677777776555555 3333333334 4556677 Q ss_pred ec-c---------hHHhcc-----------CCCCcccccCccCCcccceeeeecC------CCCCCc--ceEEecccChH Q lcl|Aclame:pro 304 FV-S---------DVMLRT-----------VPDESGMPPPQVFDPDVNVYKSIRM------GTDEEF--VKDVTHDIRTE 354 (517) Q Consensus 304 ~v-~---------~~~l~~-----------~~~~~~~~~~~~fd~~~~~y~~~~~------~~~~~~--v~~~~~dir~e 354 (517) |- + +.+|+. +..+|.. .+.+.++++.- -+++.+ |+++... .-- T Consensus 274 FYIDVGnLPk~KAeqYl~~iM~k~kNklVYDa~TGev-------~ddrk~msMlEDyWLpRReGgrgTEItTLpGg-qnl 345 (511) T protein:vir:56 274 FYVDVGNLPTQKAQQYVNGIMQNVKNRVVYDTQTGQV-------KNTTNAMSMLEDYYLPRREGSKGTEVSTLPGG-QSL 345 (511) T ss_pred EEEecCCCCchhHHHHHHHHHHhcCceEEEeccCcee-------ccchhhhhhHhhhcccccCCCCccceeecccc-CCc Confidence 63 1 111111 1122211 23333444321 133333 4444322 212 Q ss_pred HHHHHHHHHHHHHHHHhCCCccccccCCC----ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc Q lcl|Aclame:pro 355 QYKEAINQALRTLEMELKLSVGTFSFDGR----SMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLF 430 (517) Q Consensus 355 ~~~~~l~~~l~~i~~~~g~s~~~~~~~~~----~~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~ 430 (517) .-.+-++-+.+.+....+.+.+-+..+++ +..-++||.-..-....-+.+++..|..-+.++++.=|-|- +.+ T Consensus 346 gem~DV~YF~kKLy~aLnVP~SRl~~e~q~~~f~~Gr~~EItRDEiKF~KFI~RLR~rFs~lF~~~Lk~qLilK---gii 422 (511) T protein:vir:56 346 GDIEDVLYFNRKLYKAMRIPTSRAASEDQTGGINFGQGAEITRDELKFTKFVKRLQTKFETVITDPLKHQLIVN---NII 422 (511) T ss_pred ChHHHHHHHHHHHHHHhCCCcccccCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc---cCC Confidence 23344556667777777888777764421 11346777666666666777888888888888877665432 222 Q ss_pred CCCCCCc--cceEEEeCCCccCCHHHHHHHHHHHH-----hcC----CCCHHHHHHhhCCCCHHHHHHHHHHHHHhcccc Q lcl|Aclame:pro 431 GGEIPSA--EHIGVDFDDGVFQDRSALLRFYGQAK-----TFG----FIPTVEAIQRIFKVPKKTAEQWLEEIRKDQIEL 499 (517) Q Consensus 431 ~~~~~~~--~~v~i~f~d~i~~d~~~~~~~~~~~~-----~~G----~~S~~~~l~~~~~~~eeea~~el~~i~~E~~~~ 499 (517) ....+.. ..|.++|...---.+..+++.+.+-. ..+ ..|.+...++...+||+|.+++.+.|++|..+. T Consensus 423 t~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~S~~yi~k~ILr~tDeei~~~~k~I~~E~k~~ 502 (511) T protein:vir:56 423 TEEEWDANHEKLYVVFNQDSYFEEAKELEILNSRMNAMRDIQDYAGKYYSHKYIQKNILRLSDDQITAMQSEIDEEETNP 502 (511) T ss_pred CHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhcchhccccchHHHHHHHhccCHHHHHHHHHHHHHhhcCC Confidence 2222322 45777776554444444444333211 112 368888777888999999999999999998653 Q ss_pred CCCCCcccc Q lcl|Aclame:pro 500 DPVTISQRA 508 (517) Q Consensus 500 ~~~~~~~~~ 508 (517) --...+++- T Consensus 503 ~~~~~e~~f 511 (511) T protein:vir:56 503 RFQQDDQGF 511 (511) T ss_pred CCCCcccCC Confidence 322221111 No 232 >protein:vir:5737 Length: 419 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:122 # MgeName: PY54 # Cross-refs: genbank:acc:NP_892048;genbank:gi:33770511;goa:Q7Y412;interpro:IPR006427;interpro:IPR006944;uniprot:Q7Y412;genbank:GeneID:1732929;interpro:IPR010994 Probab=94.03 E-value=0.0056 Score=32.93 Aligned_cols=389 Identities=11% Similarity=0.068 Sum_probs=158.0 Q ss_pred hhccc-chhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCcccc-ccccccChH----HHHHHHHhhhhcCCc Q lcl|Aclame:pro 18 LSGQT-LKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQE-RDYMTLNLR----KLSADVLSGLVFNEQ 91 (517) Q Consensus 18 ~~~~~-~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~-~~~~~ln~~----~~i~~~~A~ll~~e~ 91 (517) |.+.. ++.- +. .+...|..+..|-.. .. ...|.... +..+.+.-- ..||+..|+| | T Consensus 1 m~~~~~~~~~---~~--------~~~~~~~~~~~~~~~-~~--~~~g~~v~~~~al~~~~v~~~i~~ia~~ia~l----p 62 (419) T protein:vir:57 1 MFIPQFWKGR---PS--------ENRVNWQVVPGGMRS-SS--SQAGVIITPETALALSAVRACVTLLAESVAQL----P 62 (419) T ss_pred CcchhhhccC---Cc--------ccccccccccccccc-cc--ccCCceechHHhhccHHHHHHHHHHHHhhccC----c Confidence 22211 1110 00 011112211111000 00 00011000 011111111 4566666654 2 Q ss_pred ceeEecCcccccccccchhHHHHHHHH-HHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeC-Ce-eEEEEEcCCeEEEEEE Q lcl|Aclame:pro 92 CEVYVSDAKDEEKKDNSFKTAHEFIQH-VFQHNKFIKNLSDYLEPTFALGGLTVRPYVDN-GE-IEFSWALANAFYPLRS 168 (517) Q Consensus 92 ~~i~~~~~~~~~~~~~~~~~~~~~l~~-~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~-g~-~~i~~v~a~~~~P~~~ 168 (517) ..+.=.+.+.... ......+...|+. --.......-.+..+.+.+..|.+++.+..+. |+ +.+..++|+.+-++. T Consensus 63 ~~~~~~~~~g~~~-~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~~~~L~pl~~~~v~v~~- 140 (419) T protein:vir:57 63 CVLYRRTENGGRE-IAFDHPLHDLIRYQPNRKDTAFEYHEQTQGVLGLEGNSYSLIDRNGRGDITELIPINPHKVIVLK- 140 (419) T ss_pred eEEEEEcCCCcee-ccccchHHHHHhhccccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCcceEEEE- Confidence 2221111110000 0011122233321 11111223334455667777888887777663 55 356667777766532 Q ss_pred cCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccccCCCCcceEEcCC Q lcl|Aclame:pro 169 NSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGL 248 (517) Q Consensus 169 ~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~ 248 (517) +.++ ..+|+ + .. .|..++-+ T Consensus 141 ~~~g-----------------~~~y~------------------~-----~~-----~~~~~~~~--------------- 160 (419) T protein:vir:57 141 GPDG-----------------MPYYD------------------I-----PS-----IGEILPMR--------------- 160 (419) T ss_pred CCCc-----------------eEEEE------------------E-----cC-----CceEEchh--------------- Confidence 1111 11111 0 00 01111110 Q ss_pred CcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHh-ccceeecchHHhccCCCCcccc------- Q lcl|Aclame:pro 249 SRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKM-GQRTVFVSDVMLRTVPDESGMP------- 320 (517) Q Consensus 249 ~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~-~~~~i~v~~~~l~~~~~~~~~~------- 320 (517) -+.|++.+. .+..+|+|.+.-+...|+.....-....+-|+. +++.-++ .......... T Consensus 161 ---~vih~r~~~-----~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil-----~~~~~~~~~~~~e~~~~ 227 (419) T protein:vir:57 161 ---MVHHIKSFS-----LDGYIGTSPIQTNPDVLGLGIAVEQHAAQVFARGTTMSGVI-----ERPFEAKAIASQAAVDA 227 (419) T ss_pred ---hEEEecCcC-----CCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCccEEE-----EecCcCCcccCHHHHHH Confidence 134455331 134679999888888777654443333444554 4444333 1111111000 Q ss_pred cCccCCc----ccceeeeecCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccc-hHHHHHHHH Q lcl|Aclame:pro 321 PPQVFDP----DVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMK-TATEIVSEN 395 (517) Q Consensus 321 ~~~~fd~----~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~-TAtei~a~~ 395 (517) ....|.. .......+-. +++-.++.++......++.+..+...+.|+...|++|..++....+.. ++.+. T Consensus 228 ~~~~~~~~~~g~~nag~~~vl-~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~sn~e~~---- 302 (419) T protein:vir:57 228 ILAKWTERYGGVRNAFSVGML-QEGMTYKQLSQDNEKAQLLQSRQYTVNEVCRLYKVPPHMIQDLQKSTNNNIEHQ---- 302 (419) T ss_pred HHHHHHHHhccccccccceec-CCCceEEEcCCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCccccHHHH---- Confidence 0000100 0000110111 233345556655666777888888888999999999999986554322 22111 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCCHHHHHH Q lcl|Aclame:pro 396 DLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTVEAIQ 475 (517) Q Consensus 396 ~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~~~l~ 475 (517) ....++.+|.-++..+....+. .++.......+.|.+++++-+..|..+.++....++.+|+|+.-+++. T Consensus 303 ---------~~~f~~~~l~P~~~~ie~~l~~-~ll~~~~~~~~~i~fd~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~ 372 (419) T protein:vir:57 303 ---------GLQYVIYTMLAILKRHESAMMR-DLLLPSERRDFYIEFNVSSLLRGDQKSRYESYALGRQWGWLSVNDIRR 372 (419) T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHh-hccCccccCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHH Confidence 1222333344443333221111 122222223445777777767789999999999999999999999765 Q ss_pred hhCCCCHH-HHHHHHHHHHHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 476 RIFKVPKK-TAEQWLEEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 476 ~~~~~~ee-ea~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) ..|+..- ..++-+--.. ............+.+...-+.| T Consensus 373 -~~gl~p~~ggD~~~~~~n--~~~~~~~~~~~~~~~~~~~~~~ 412 (419) T protein:vir:57 373 -MENLTPIPGGDKYLTPLN--MVDSKALTGIGKATPQQLKDIE 412 (419) T ss_pred -HhCCCCCCCcCeeeeccc--cccccccccccCCCcccCcchh Confidence 4465431 1221110000 0000000000000000011111 No 233 >protein:vir:107880 Length: 491 # NCBI annotation: gp29 # Family: family:all:313 # MgeID: mge:1565 # MgeName: BcepMu # Cross-refs: genbank:acc:YP_024702;genbank:gi:48696939;genbank:GeneID:2845968 Probab=93.37 E-value=0.0078 Score=32.15 Aligned_cols=392 Identities=11% Similarity=0.062 Sum_probs=163.9 Q ss_pred HHHHhhc---ccchhhhccccCcCCHHHHHHHHHHHHHhcC------CCccccc--ccccCccc-ccccc-ccChHHHHH Q lcl|Aclame:pro 14 GGYALSG---QTLKSINDHEKINIDPNELARIERNLRQYEG------DYPQVEY--INSQGKIQ-ERDYM-TLNLRKLSA 80 (517) Q Consensus 14 ~~~~~~~---~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g------~~~~~~~--~~~~~~~~-~~~~~-~ln~~~~i~ 80 (517) |...+-- ++++.- +........|.. ++-+.+ .++.+.. +...+... -+... -.-+...+ T Consensus 1 m~~~i~~~~g~p~~~~------~~~~~~~~~ia~-~~~~~~~~~~~~~~~~~~~iLr~~~~~~~~y~~m~~D~~i~s~l- 72 (491) T protein:vir:10 1 MSKGLWVSPTEFVTFG------EPDKSLSSQIAT-RARSIDFFALGMYLPNPDPVLKALGKDIRVYRELRADAHVGGCV- 72 (491) T ss_pred CCCceeCCCCCccCcc------cCChHHHHHHHh-hhcccccccccCCccchHHHHHhcCCCHHHHHHHhhChHHHHHH- Confidence 1111111 122110 001111122211 110111 1111100 00000000 00000 00111222 Q ss_pred HHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe--CCee---EE Q lcl|Aclame:pro 81 DVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD--NGEI---EF 155 (517) Q Consensus 81 ~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d--~g~~---~i 155 (517) .+.-.-|.+.+-.|...+. .....+++.+.|+.-.|...+.+++ +|..+|-.++-+.|. +|.. ++ T Consensus 73 ~~Rk~av~~~~w~i~~~~~---------~~~~~e~v~e~l~~~~~~~~l~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l 142 (491) T protein:vir:10 73 RRRKAAVKALEWGLDRGKA---------KSRVAKSIADVFADLDLSRIVTEML-DAVLYGYQPMEITWGKVGNYIVPIDV 142 (491) T ss_pred HHHHHHHhCCCcEEecCCC---------CHHHHHHHHHHHhcCCHHHHHHHHH-HhhhhcceeEEEEEeecCCeeEEEEe Confidence 2222334554444433221 1234678888888778888887776 688999999988886 3322 23 Q ss_pred EEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccc Q lcl|Aclame:pro 156 SWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEEL 235 (517) Q Consensus 156 ~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~ 235 (517) .++++..|.+ +. ++.- + |...+...-|.++| T Consensus 143 ~~r~~~~f~~---d~-----------------~~~l--------------------~-----~~~~~~~~~g~~l~---- 173 (491) T protein:vir:10 143 VGKPADWFVY---DP-----------------ENQL--------------------R-----FRSKDHWMQGEELP---- 173 (491) T ss_pred eeecccceee---cc-----------------CCce--------------------E-----EecCCCCCCcceec---- Confidence 4444433221 10 0000 0 11011000122111 Q ss_pred cCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHH-HhccceeecchHHhccCC Q lcl|Aclame:pro 236 YEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEI-KMGQRTVFVSDVMLRTVP 314 (517) Q Consensus 236 ~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~-~~~~~~i~v~~~~l~~~~ 314 (517) +. . |++++ .+....+|+|.|.+..|.-..---+..+..|+.-+ +.|.|.+++ +.+ T Consensus 174 -----~~------k---~i~~~----~~~~~~~p~g~gLl~~~~w~~~fK~~~~~~w~~f~E~yG~P~~ig------ky~ 229 (491) T protein:vir:10 174 -----AR------K---FLVPR----QEATYLNPYGFPDLSMCFWPTTFKKGGLKFWVQFTEKYGSPMLVG------KHP 229 (491) T ss_pred -----CC------C---EEEEE----ecCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEE------ecC Confidence 11 1 33332 12234679999999998876666666666666655 456666554 112 Q ss_pred CCcccccCccCCcccceeeeecCC-----CCCCcceEEecccC---hHHHHHHHHHHHHHHHHHhCCCccccccCCCccc Q lcl|Aclame:pro 315 DESGMPPPQVFDPDVNVYKSIRMG-----TDEEFVKDVTHDIR---TEQYKEAINQALRTLEMELKLSVGTFSFDGRSMK 386 (517) Q Consensus 315 ~~~~~~~~~~fd~~~~~y~~~~~~-----~~~~~v~~~~~dir---~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~ 386 (517) .+......... .+....+..+ ..+..|+.++.... .+.|.+.++.+=++|+ ++-++ +|++-+++|.. T Consensus 230 ~~a~~~ek~~l---~~al~~~~~~a~~viP~~~~ie~~ea~~~~g~~~~y~~li~~~d~~Is-k~iLG-qtlTt~~~gs~ 304 (491) T protein:vir:10 230 RSASDGEKNLL---LDCLEDMVQDAVAVVPDDSSIEIKEAAGKTGSADVYERLLHFCRGEVS-IALLG-QNQTTEATSTR 304 (491) T ss_pred CCCCHHHHHHH---HHHHHHHhcCcEEEecCCceeEEEecCCCCCChhHHHHHHHHHHHHHH-HHHhh-hhcccCcccch Confidence 21111100000 0011111111 12334666665432 2345555554444443 33343 44443333322 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcC Q lcl|Aclame:pro 387 TATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFG 466 (517) Q Consensus 387 TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G 466 (517) .+.++-..- ...-+..-.+.+...|.+|++-++.+ + +++. ..+.+.|... ..+.++.++.+.+++..| T Consensus 305 a~~~vh~~v--~~di~~~D~~~i~~tln~li~~l~~~----N-~~~~----~~p~f~~~~~-~e~~~~~a~~~~~L~~~G 372 (491) T protein:vir:10 305 ASAQAGLEV--TDDIRDGDKAVVSEAMNMLIRWICDL----N-FDGA----DRPVFDMWEQ-EQVDEIQAGRDQKLTQAG 372 (491) T ss_pred hHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHh----c-CCCC----CcceEEecCc-CchhHHHHHHHHHHHhCC Confidence 222222111 22233344667778888888876653 2 1211 1245677653 344456788888999999 Q ss_pred CCCHHHHHHhhCCCCHHHHHHHHHHHHHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 467 FIPTVEAIQRIFKVPKKTAEQWLEEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 467 ~~S~~~~l~~~~~~~eeea~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) +--.+.++.+.+|+.+.+-.+.....+ ...+.+..........+.++ T Consensus 373 ~~i~~~~i~e~~Gip~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 419 (491) T protein:vir:10 373 ARFTPAYFKRAYNLQDGDLDERPLPVS----AVDTVGAASFAEFEAPDQDA 419 (491) T ss_pred CcCCHHHHHHHhCCCCCCcCccccccC----CCCCcccccccccCCCCCCc Confidence 855667899999987543222221111 10111111111111122222 No 234 >protein:vir:80333 Length: 419 # NCBI annotation: gp4, phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1881 # MgeName: phi644-2 # Cross-refs: genbank:acc:YP_001111083;genbank:gi:134288632;genbank:GeneID:4960580 Probab=93.18 E-value=0.0085 Score=31.94 Aligned_cols=389 Identities=10% Similarity=0.054 Sum_probs=152.5 Q ss_pred HhhcccchhhhccccCcCCHHHHHHHHHHHH-HhcCCCcccccccccCcccc-ccccccCh----HHHHHHHHhhhhcCC Q lcl|Aclame:pro 17 ALSGQTLKSINDHEKINIDPNELARIERNLR-QYEGDYPQVEYINSQGKIQE-RDYMTLNL----RKLSADVLSGLVFNE 90 (517) Q Consensus 17 ~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~-~Y~g~~~~~~~~~~~~~~~~-~~~~~ln~----~~~i~~~~A~ll~~e 90 (517) |+..+..+.-.. .....+ .-|.. +..+....- +.... ...+.+.- -..||+..|+| T Consensus 1 m~~~~~~~~~~~-~~~~~~-------~~~~~~~~g~~~s~~------~~~v~~~~al~~~~v~~cv~~ia~~ia~l---- 62 (419) T protein:vir:80 1 MFFSRQLLSNLG-QTQPGS-------GGWVSALLGSARSEA------GQVVTPASALSLTVLQNCVTLLAESIAQL---- 62 (419) T ss_pred CCcccccccccC-cCCCCc-------chhhHHhhccccccc------CcccChHHhhccHHHHHHHHHHHHhhccC---- Confidence 111111111111 000111 12322 222222110 00000 00111111 14566666654 Q ss_pred cceeEecCcccccccccchhHHHHHHHHH-HhhhhHHHHHHHHHHHHHhhCCEEEEEEEe-CCee-EEEEEcCCeEEEEE Q lcl|Aclame:pro 91 QCEVYVSDAKDEEKKDNSFKTAHEFIQHV-FQHNKFIKNLSDYLEPTFALGGLTVRPYVD-NGEI-EFSWALANAFYPLR 167 (517) Q Consensus 91 ~~~i~~~~~~~~~~~~~~~~~~~~~l~~~-l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d-~g~~-~i~~v~a~~~~P~~ 167 (517) |..+.-.+.+..+. .....+...|+.- =.......-.+.++.+.+..|.+++.+..+ +|++ .+..++|+.+-+.. T Consensus 63 p~~~~~~~~~~~~~--~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~~~~L~~i~~~~v~i~~ 140 (419) T protein:vir:80 63 PVELYERSGDDRKP--ATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMK 140 (419) T ss_pred ceEEEEecCCCccc--ccccHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEecCceEEEEE Confidence 33332212111111 1111222223210 001112233344556777788888877766 3553 36666676665421 Q ss_pred EcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccccCCCCcceEEcC Q lcl|Aclame:pro 168 SNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQG 247 (517) Q Consensus 168 ~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g 247 (517) +.+ +..+| ++ ... ..+ +.+ T Consensus 141 -~~~-----------------~~~~y------------------~~-------~~~----~~~---------~~~----- 159 (419) T protein:vir:80 141 -GPD-----------------LKPMY------------------RV-------AGA----DPL---------PQR----- 159 (419) T ss_pred -CCC-----------------ceEEE------------------EE-------cCc----ccc---------chh----- Confidence 111 11111 00 000 001 111 Q ss_pred CCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhc-cceeecchHHhccCCCCcccccCccCC Q lcl|Aclame:pro 248 LSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMG-QRTVFVSDVMLRTVPDESGMPPPQVFD 326 (517) Q Consensus 248 ~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~-~~~i~v~~~~l~~~~~~~~~~~~~~fd 326 (517) -+.+++.+ . .+..+|+|.+.-+...|+.....-....+-++.| ++.-++ ....+..+.......+ T Consensus 160 ----~i~h~~~~---~--~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil-----~~~~~~~~~~~~~~~~ 225 (419) T protein:vir:80 160 ----LVHHVRWM---S--INGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVI-----ERPTDAPALKDQASVD 225 (419) T ss_pred ----heEEecCC---C--CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEE-----EecCCCCcccCHHHHH Confidence 12344432 1 1346799988877776665544333333344554 444333 2111111100000000 Q ss_pred ccc----ceeee-------ecCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCcc-chHHHHHHH Q lcl|Aclame:pro 327 PDV----NVYKS-------IRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSM-KTATEIVSE 394 (517) Q Consensus 327 ~~~----~~y~~-------~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~-~TAtei~a~ 394 (517) .-. ..|.+ +-. +++-.++.++......++.+..+...++|+...|++|..+|...++. .++.+.. T Consensus 226 ~~~~~~~~~~~g~~n~g~~~vl-~~g~~~~~l~~s~~d~q~~e~~~~~~~~Ia~~fgVPp~llg~~~~~t~~n~e~~~-- 302 (419) T protein:vir:80 226 RITDGWNAKFGGSGNAKKVALL-QEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQS-- 302 (419) T ss_pred HHHHHHHHHhcCccccCCceec-CCCceEEeccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhcCCCCCCcccHHHHH-- Confidence 000 01111 111 12223444444444556777777778899999999999998654432 2222221 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCCHHHHH Q lcl|Aclame:pro 395 NDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTVEAI 474 (517) Q Consensus 395 ~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~~~l 474 (517) ...++.+|.-++..|....+. .++.......+.+.++++.-+..|..+.++...+++.+|+|+.-+++ T Consensus 303 -----------~~f~~~~l~P~~~~ie~~l~~-kll~~~~~~~~~i~fd~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R 370 (419) T protein:vir:80 303 -----------LQFVIYTLLPWVKRHEQAKTR-DLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIR 370 (419) T ss_pred -----------HHHHHHHHHHHHHHHHHHHhh-hccCccccCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHH Confidence 112222333333322221111 12222222345567777676677889999999999999999999976 Q ss_pred HhhCCCCHH-HHHHHHHHHHH-hccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 475 QRIFKVPKK-TAEQWLEEIRK-DQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 475 ~~~~~~~ee-ea~~el~~i~~-E~~~~~~~~~~~~~~~~~~G~ee 517 (517) +. .|+..- ..++-+--..- ......+...++ +++....-+| T Consensus 371 ~~-~g~~p~~gGD~~~~~~n~~~~~~~~~~~~~~-~~~~~~~~~~ 413 (419) T protein:vir:80 371 RL-ENMPPVKGGDIYLSPMNMVDASKPQPIPMGK-TEPTKAALDE 413 (419) T ss_pred HH-hCCCCCCCcceeeeccccccccccccccCCC-CCchhhhHHH Confidence 54 455431 12111100000 000001111111 0111111122 No 235 >protein:vir:4509 Length: 424 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:97 # MgeName: V # Cross-refs: genbank:acc:NP_599035;genbank:gi:19548993;genbank:GeneID:935206 Probab=92.60 E-value=0.011 Score=31.38 Aligned_cols=392 Identities=10% Similarity=0.031 Sum_probs=156.1 Q ss_pred HHHHhhcccc---------hhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccChH------HH Q lcl|Aclame:pro 14 GGYALSGQTL---------KSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLR------KL 78 (517) Q Consensus 14 ~~~~~~~~~~---------~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~------~~ 78 (517) |.++...-++ +.+...+...-+..-.. ..|..+. | + ...+..... ...+..+ .. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~--~~~~~~~-~----~---~~~~~~vs~-~~al~~~~v~~cv~~ 69 (424) T protein:vir:45 1 MLYCWWAHWLWPEGGRVLLDALFRSKSLENPSTPIT--GDAVDTD-G----L---FRADVYVSP-ETAMKLAAVYSCIYV 69 (424) T ss_pred CeeEeeeceecCcchhHHHHhhccccCCCCCccccc--hhhhhhh-c----c---ccCCceech-HHhhccHHHHHHHHH Confidence 4554443221 01110011000000000 0000000 0 0 000000000 0011111 45 Q ss_pred HHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHH-HHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe-CCee-EE Q lcl|Aclame:pro 79 SADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQH-VFQHNKFIKNLSDYLEPTFALGGLTVRPYVD-NGEI-EF 155 (517) Q Consensus 79 i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~-~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d-~g~~-~i 155 (517) ||+..|++ |..+.-.+... ........+...|+. --.......-.+.++.+.+-.|.+++.+..+ .|.+ .+ T Consensus 70 Ia~~iA~l----p~~v~~~~~~~--~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~v~~lll~Gna~~~i~r~~~G~~~~L 143 (424) T protein:vir:45 70 LSSSLAQM----PLHVMRRHKGK--VEPARDHPAFYLVHDEPNTWQTSYKWRELKQRHILGWGNGYTWVKRNRRGEVISL 143 (424) T ss_pred HHHHHhhC----ceEEEEecCCc--eeecccchHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEE Confidence 66777765 33332111110 001111223333321 0001111222334556677778888877665 3554 56 Q ss_pred EEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccc Q lcl|Aclame:pro 156 SWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEEL 235 (517) Q Consensus 156 ~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~ 235 (517) ..++|+.+.+. .+++ ...|+ +. ... |.. .+ T Consensus 144 ~~l~~~~v~i~-~~~~------------------~~~y~------------------~~----~~~-----~~~----~~ 173 (424) T protein:vir:45 144 DCCMPWETTLM-NTGG------------------RYTYG------------------LY----NEY-----GAF----AI 173 (424) T ss_pred EEecCceEEEE-EcCC------------------eEEEE------------------EE----ecC-----ceE----EE Confidence 66777765542 1111 11111 10 000 000 00 Q ss_pred cCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHH-HHhc-cceeec--chHHhc Q lcl|Aclame:pro 236 YEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWE-IKMG-QRTVFV--SDVMLR 311 (517) Q Consensus 236 ~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e-~~~~-~~~i~v--~~~~l~ 311 (517) + +. -++||+.+.+ +..+|+|.+.-+...|..... -..+... |+.| ++.-++ |..+ T Consensus 174 ~---~~----------eVih~r~~~~-----d~~~G~spi~~~~~~i~~~~~-~~~~~~~~f~ng~~p~gil~~~~~l-- 232 (424) T protein:vir:45 174 S---PD----------DMIHIRALGN-----NQKMGLSPIMQHAETIGMGMS-GQKYTESFFSGNARPAGIVSVKSGL-- 232 (424) T ss_pred C---cc----------cEEEecCcCC-----CCcccccHHHHHHHHHHHHHH-HHHHHHHHHhccCCccEEEEeCCCC-- Confidence 0 00 1345654322 235699988877777665433 3334333 4543 444433 2111 Q ss_pred cCCCCcccccCccCCcccceeeeecCC-------CCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCc Q lcl|Aclame:pro 312 TVPDESGMPPPQVFDPDVNVYKSIRMG-------TDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRS 384 (517) Q Consensus 312 ~~~~~~~~~~~~~fd~~~~~y~~~~~~-------~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~ 384 (517) .+.........|. ..|.+.... +++-.++.++......++.+..+...++|+..-|++|..++...++ T Consensus 233 --~~e~~~~~~~~~~---~~~~g~~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~ 307 (424) T protein:vir:45 233 --NKESWGWLKDQWQ---KASQALRRQENKTMLLPADLDYKALTVSPVDAQIIDMMKLNRSMIAGIFNIPAHMINDLEKA 307 (424) T ss_pred --CHHHHHHHHHHHH---HHhccccccCCceeEcCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCC Confidence 0000000001111 112221100 1222344444444455677877788889999999999999865443 Q ss_pred c-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCC-CCCccceEEEeCCCccCCHHHHHHHHHHH Q lcl|Aclame:pro 385 M-KTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGE-IPSAEHIGVDFDDGVFQDRSALLRFYGQA 462 (517) Q Consensus 385 ~-~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~-~~~~~~v~i~f~d~i~~d~~~~~~~~~~~ 462 (517) . .++.+. . +..++.+|..++..|..-.+. .++... ....+.|.++.+.-+..|..+.++...++ T Consensus 308 t~sn~eq~---~----------~~f~~~tL~P~~~~ie~~ln~-kLl~~~e~~~g~~i~fd~~~llr~d~~~r~~~~~~~ 373 (424) T protein:vir:45 308 TFSNISAQ---A----------IQFVRYTMMPWVTNWEQELNR-RLFTRAELAAGYYVRFNLTGLLRGTPQERAQFYHFA 373 (424) T ss_pred CcccHHHH---H----------HHHHHHHHHHHHHHHHHHHHH-hcCChhhhcCCcEEEeechhhhccCHHHHHHHHHHH Confidence 2 222111 1 122233333333333221111 122111 11234567777776678889999999999 Q ss_pred HhcCCCCHHHHHHhhCCCCHH-HHHHHHHHHHHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 463 KTFGFIPTVEAIQRIFKVPKK-TAEQWLEEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 463 ~~~G~~S~~~~l~~~~~~~ee-ea~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) +.+|+|+.-++++ ..|+..- ..++-+.-. + ...+....+.+..+.+-++| T Consensus 374 ~~~g~~T~NE~R~-~~gl~pi~ggD~~~~~~---n-~~~~~~~~~~~~~~~~~~~~ 424 (424) T protein:vir:45 374 ITDGWMSRNEARA-FEDMNPVEGLDEMLVSV---N-AANPAGDFKPPKNDEGKTNE 424 (424) T ss_pred HhCCCcCHHHHHH-HhCCCCCCCcceeeecc---c-ccccccccCCCCCCCCCCCC Confidence 9999999999664 4465431 121111110 0 01111111222222111222 No 236 >protein:vir:81017 Length: 521 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:1888 # MgeName: Phi1 # Cross-refs: genbank:acc:YP_001469501;genbank:gi:157311458;genbank:GeneID:5602316 Probab=92.59 E-value=0.011 Score=31.37 Aligned_cols=433 Identities=11% Similarity=0.120 Sum_probs=195.6 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCH----------------------------------HHHHHHHHHH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDP----------------------------------NELARIERNL 46 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~----------------------------------~~~~~i~~~~ 46 (517) ..+++.+|.|+.---.... +.+++ ....++.|. ....-|+++| T Consensus 2 ~~~l~~~~~~~~~~~~~~~-~~~~~--~~~s~~~P~~~dGa~~i~~~~~~~~~~~gg~~~~~~~~e~~~~~~~eLI~~YR 78 (521) T protein:vir:81 2 FSRLKMLARWADFDNDKYE-EQIKD--KAESIAAPKNNDGATEVEINDNLPASAWNSLTQQFYSTDQKISTTKQLVNTYR 78 (521) T ss_pred cchhhhhHhhcCchhhhHH-hhhcc--CccccccCCCCCCceEecccCCCcceeecceeeeecccccchhhHHHHHHHHH Confidence 3444444555431111000 00000 000011111 2233444444 Q ss_pred HHhcCCCcccccccccCccccccccccChHHHHHHHHhhhhc----CCcceeEecCcccccccccchhHHHHHHHHHHhh Q lcl|Aclame:pro 47 RQYEGDYPQVEYINSQGKIQERDYMTLNLRKLSADVLSGLVF----NEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQH 122 (517) Q Consensus 47 ~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~~~i~~~~A~ll~----~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 122 (517) .+... |.+. ..|-.-.-+.++ .+++++.+++.. ..+...++-.+..+.++.- T Consensus 79 ~ma~~--pEvd-------------------~Av~eIVneaiv~d~~~~pV~l~L~~~~---~s~~iK~kI~eeF~~Il~l 134 (521) T protein:vir:81 79 GLMNN--HEVE-------------------NAVQNIVNDAIVFEEGHEVVSLNLEATG---FSESVKERIHEEFKDLLNT 134 (521) T ss_pred HHhhc--cchh-------------------hHHHHhhcceeEecCCCceEEEEecccc---cchHHHHHHHHHHHHHHHH Confidence 44221 2210 111111111111 124445444332 1222334455667777777 Q ss_pred hhHHHHHHHHHHHHHhhCCEEEEEEEeC----CeeEEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEE Q lcl|Aclame:pro 123 NKFIKNLSDYLEPTFALGGLTVRPYVDN----GEIEFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEF 198 (517) Q Consensus 123 n~f~~~~~~~~~~a~~~G~~~~k~~~d~----g~~~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~ 198 (517) -+|.++..+....+.+.|..+||..+|+ |=..+..++|.++.++..........+- ..++-..|| + T Consensus 135 l~F~~~~~~~fR~WYVDgRi~fhkiid~~pk~GI~Elr~lDPr~i~~vr~i~k~~~~~~~------v~~~~~e~f----~ 204 (521) T protein:vir:81 135 IQFDRRGQDMFRRWYVDSRIFFHKIIGKNPKDGIVELRQLDPRNLEYVREIITEDTPEGK------IYKATKEYF----I 204 (521) T ss_pred hccchhhhHHHhhhhhcceEEEEEEEcCCccccceeeeeeCCcceeeeeeecccccCccc------eecceeeee----e Confidence 7899999999999999999999999873 3356888999988776432111000000 000000111 1 Q ss_pred EeecceeeccceEEEEEEEeecCCccccCcccccccccCCCCcceEE-cCCCcceEEEecCCccccccCCCCCCcchhhh Q lcl|Aclame:pro 199 HEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYI-QGLSRPLFNYLKPSGFNNINPHSPLGLGITDN 277 (517) Q Consensus 199 h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~-~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~ 277 (517) +.++. -.|......|..+ .+..+|-+.+ ++. .|+ .+.....-+|-+.. T Consensus 205 Y~~~~-----~~~~~~g~~~~~~----~~vkI~~dAI-------~y~hSGl---------------~d~~~~~i~syLhk 253 (521) T protein:vir:81 205 YTVGN-----SSYCAGGQVFSPN----SRVKIPRSAI-------TYAHSGL---------------MDCDDKYIIGYLHR 253 (521) T ss_pred eecCC-----ccccccceeecCC----cceeechhhe-------eeeeccc---------------eeCCCCeeeecchh Confidence 11111 1111111111110 1122221110 011 111 12222223455555 Q ss_pred hHHHHHHHHHHHHHHHHHH---Hhccceeec-c---------hHHhcc----C-----CCCcccccCccCCcccceeeee Q lcl|Aclame:pro 278 SVSTLKKINDTYDQFWWEI---KMGQRTVFV-S---------DVMLRT----V-----PDESGMPPPQVFDPDVNVYKSI 335 (517) Q Consensus 278 ~~~lid~lD~~~s~~~~e~---~~~~~~i~v-~---------~~~l~~----~-----~~~~~~~~~~~fd~~~~~y~~~ 335 (517) |.-.+-.| +..-..+-.+ |.-.+|||- + +.+|+. . -+...+. -.|++.++++ T Consensus 254 AiKp~NQL-km~EDAlVIYRitRAPeRRvFYIDvGnlpk~KAeqYl~~im~k~kNklvYDa~TGe-----v~ddrk~msM 327 (521) T protein:vir:81 254 AVKPANQL-KLLEDAMVVYRITRAPERRVFFIDTGNMNNRKAAQHMNSVAQSFKNRVVYDASTGK-----LKNQQANLSM 327 (521) T ss_pred hhHhHHhh-HHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEeeccccc-----ccccccccch Confidence 55444444 2333333333 455567763 1 111111 0 0111111 1244445544 Q ss_pred cCC------CCCCc--ceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCC-c--cchHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 336 RMG------TDEEF--VKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGR-S--MKTATEIVSENDLTYRTRND 404 (517) Q Consensus 336 ~~~------~~~~~--v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~-~--~~TAtei~a~~~~~~~t~~~ 404 (517) .-+ +++.+ |+++..- .--.-.+-++-+.+.+....+.+.+-+..+++ + ..-++||.-..-....-+.+ T Consensus 328 lEDyWLpRReGgrgTEItTLpGg-qnlgem~DV~YF~kkLy~aLnVP~sRl~~e~~~~~~~Gr~~EItRDEiKF~KFI~r 406 (521) T protein:vir:81 328 TEDYWLQRRDGKAITDVTTLPGA-SGMSDIDDIRYFNRKLYEALRVPLSRSNLSDANMVIGGDGSEITRDELEFSKFIRT 406 (521) T ss_pred hhhhcccccCCCcccceeecccC-CCCChHHHHHHHHHHHHHHhCCccccccCCCCcceeccccchhhHHHHHHHHHHHH Confidence 211 33333 4444332 22223344556667778888888887754432 2 23467776666566667777 Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCCCCCC--ccceEEEeCCCccCCHHHHHHHHHHHH-----hcC----CCCHHHH Q lcl|Aclame:pro 405 HVYEVEQFIKGLVISVLELAKTYKLFGGEIPS--AEHIGVDFDDGVFQDRSALLRFYGQAK-----TFG----FIPTVEA 473 (517) Q Consensus 405 ~~~~~~~al~~li~~il~~~~~~~~~~~~~~~--~~~v~i~f~d~i~~d~~~~~~~~~~~~-----~~G----~~S~~~~ 473 (517) ++..|..-+.++++.=|-|- +.+....+. ...|.++|...---.+..+++.+.+-. ..+ ..|.+.. T Consensus 407 LR~rFs~lf~~~L~~qLilK---giit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~s~dyi 483 (521) T protein:vir:81 407 RQSQFSEVLRDPLKYNLILK---NVITEDDWDREINNIKVVFHRDSYYTEVKDAEILERRIGLIERITPYIGKYFSNQTV 483 (521) T ss_pred HHHHHHHHHHHHHHHhhhhh---cCCCHHHHHHHhhcceEEEeecchHHHHHHHHHHHHHHHHHHHhhhhhccccchHHH Confidence 88888888888777655432 122222111 223677776554444444444333211 112 4688887 Q ss_pred HHhhCCCCHHHHHHHHHHHHHhccccCCCCCccccCCCCC Q lcl|Aclame:pro 474 IQRIFKVPKKTAEQWLEEIRKDQIELDPVTISQRAQKRMF 513 (517) Q Consensus 474 l~~~~~~~eeea~~el~~i~~E~~~~~~~~~~~~~~~~~~ 513 (517) .++...+||+|.+++.+.|++|..+.--...++ ..+.+ T Consensus 484 ~k~ILr~tDeei~~~~k~I~~E~~~~~~~~p~~--~~~~f 521 (521) T protein:vir:81 484 MRDILKYTDDQMDTEKKQIEEEANDPRFKQTPD--EIEDF 521 (521) T ss_pred HHHHhccCHHHHHHHHHHHHHHhhCCCCCCCcc--cccCC Confidence 777889999999999999999875432211110 00011 No 237 >protein:vir:108049 Length: 524 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:2002 # MgeName: JS98 # Cross-refs: genbank:acc:YP_001595296;genbank:gi:161622602;genbank:GeneID:5783768 Probab=92.50 E-value=0.011 Score=31.29 Aligned_cols=428 Identities=11% Similarity=0.084 Sum_probs=189.9 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhh-ccccCcCCH---------------------------------HHHHHHHHHH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSIN-DHEKINIDP---------------------------------NELARIERNL 46 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~-~~~~i~~~~---------------------------------~~~~~i~~~~ 46 (517) |-=|..+-++|+--...-+...-+.+. ....++.|. ....-|+++| T Consensus 1 ~~~~~~~~~lf~f~~~~de~~~~~~~~~~~~S~~~p~~~dGa~~I~~~~~~~~~~~~~q~~y~~~e~~~~~~~eLI~~YR 80 (524) T protein:vir:10 1 MANFNTILSFLKPWANEDEKEYKQQINNNLESVTAPKLDDGAREIETQEQNIPYNALMQQMFGSNEPEVKNTRELIDTYR 80 (524) T ss_pred CCchhhHHHHhhhhhcchhhhhhhhhccCCCccccCCCCCCceeeccCcccccchhhhhhhhhcccchhhhHHHHHHHHH Confidence 665555555443111000000000000 000111111 1122233333 Q ss_pred HHhcCCCcccccccccCccccccccccChHHHHHHHHhhhhc----CCcceeEecCcccccccccchhHHHHHHHHHHhh Q lcl|Aclame:pro 47 RQYEGDYPQVEYINSQGKIQERDYMTLNLRKLSADVLSGLVF----NEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQH 122 (517) Q Consensus 47 ~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~~~i~~~~A~ll~----~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 122 (517) .++.. |.+ -..|-.-.-+.++ .+++++.+++... .+...++-.+..+.++.- T Consensus 81 ~ma~~--pEv-------------------d~Av~eIVneaiv~d~~~~pV~l~Ld~~~~---s~siK~kI~eeF~~Il~l 136 (524) T protein:vir:10 81 NLMNN--YEV-------------------DNAVQEIVSDAIVYEDDKEVVALNLDGTDF---SQSIKDKILAEFSEVLNL 136 (524) T ss_pred HHhhc--cch-------------------hhHHHHhhcceeEecCCCceEEEEecccCc---chHHHHHHHHHHHHHHHH Confidence 33211 111 0111111111122 2244555544331 122234455667777777 Q ss_pred hhHHHHHHHHHHHHHhhCCEEEEEEEeCC-----eeEEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEE Q lcl|Aclame:pro 123 NKFIKNLSDYLEPTFALGGLTVRPYVDNG-----EIEFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLE 197 (517) Q Consensus 123 n~f~~~~~~~~~~a~~~G~~~~k~~~d~g-----~~~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE 197 (517) -+|.++..+....+.+.|..+||..+|.. =..+..++|.++-++.---... ..+...++-+ T Consensus 137 l~F~~~~~~~fR~WYVDgRi~fHkiid~~~pk~GI~Elr~lDPr~i~~vr~i~~~~-------------~~~~~vi~~~- 202 (524) T protein:vir:10 137 LNFQRKGTDHFQRWYVDSRIFFHKIINPKKMKDGVQELRRLDPRQVQYIREIVTRM-------------EDGVKIVDGY- 202 (524) T ss_pred hccchhhhHHHhhheeeceEEEEEEeeCCCccccceeeeeeCCccceeeeeecccC-------------cccchhhcch- Confidence 78999999999999999999999999843 3457788888876542210000 0011111110 Q ss_pred EEeecceeeccceEEEEEEEeecCCcc--ccCcccccccccCCCCcc-eEE--cCCCcceEEEecCCccccccCCCCCCc Q lcl|Aclame:pro 198 FHEWEKTEEGESLYVITNELYKSDNEG--EIGKRIPLEELYEGMQEK-TYI--QGLSRPLFNYLKPSGFNNINPHSPLGL 272 (517) Q Consensus 198 ~h~~~~~~~~~~~y~I~n~ly~~~~~~--~lG~~v~l~~~~~~l~~~-~~~--~g~~~p~f~~~~~~~~N~~~~~splG~ 272 (517) -++-+|..++.. .-|.-.+... .-.++.+ +++ .|+ +... ...-+ T Consensus 203 ---------------~e~f~Y~~~~~~~~~~~~~~~~~~-~ikI~~dAIvy~~SGL-------~d~~--------~~~i~ 251 (524) T protein:vir:10 203 ---------------REFFVYDTGHESYCADGRIYSAGT-KVKIPRAAVVYAHSGL-------LDCC--------GKNII 251 (524) T ss_pred ---------------hhheeecCCCcccccCcceecCCc-ceecchhheeeeccCc-------ccCC--------CCcee Confidence 011122111100 0000000000 0001111 111 111 1100 01113 Q ss_pred chhhhhHHHHHHHHHHHHHHHHHH---Hhccceeec-c---------hHHhcc-----------CCCCcccccCccCCcc Q lcl|Aclame:pro 273 GITDNSVSTLKKINDTYDQFWWEI---KMGQRTVFV-S---------DVMLRT-----------VPDESGMPPPQVFDPD 328 (517) Q Consensus 273 S~~~~~~~lid~lD~~~s~~~~e~---~~~~~~i~v-~---------~~~l~~-----------~~~~~~~~~~~~fd~~ 328 (517) |-+..|.-.+-.| +..-..+-.+ |.-.+|||- + +.+|+. +..+|. -.+ T Consensus 252 syLhkAiKp~NQL-km~EDAlVIYRitRAPeRRvFYIDVGnlPk~KAeqYl~~im~k~kNKlvYDa~TGe-------v~d 323 (524) T protein:vir:10 252 GYLQRAIKPANQL-KLMEDAMVIYRITRAPDRRVFYIDTGNMPSRKAAAQMQHIMNTMKNRVVYDASTGK-------IKN 323 (524) T ss_pred ccchHhhHHHHhh-HHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEEeccCCe-------ecc Confidence 4455554443333 2333333333 455567763 1 111111 112211 123 Q ss_pred cceeeeecC------CCCCCc--ceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCC---ccchHHHHHHHHHH Q lcl|Aclame:pro 329 VNVYKSIRM------GTDEEF--VKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGR---SMKTATEIVSENDL 397 (517) Q Consensus 329 ~~~y~~~~~------~~~~~~--v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~---~~~TAtei~a~~~~ 397 (517) .+.++++.- -+++.+ |+++..- .--.-.+.++-+.+.+....+.+.+-+..+++ ...-++||.-..-. T Consensus 324 drk~msMlEDyWLpRReGgrgTEItTLpGg-qnlgem~DV~YF~kkLy~aLnVP~sRl~~e~~~~f~~gr~~EItRDEiK 402 (524) T protein:vir:10 324 QQHNMSMTEDYWLQRRDGKAVTEVDTMPGA-TGMSDMDDVLYFRTALYRALRIPESRIPSESNSGVMFDAGTAITRDELK 402 (524) T ss_pred chhhhhhHhhhcccccCCCCccceeecccc-CCcChHHHHHHHHHHHHHHhCCCchhccCCCCccccccccchhhHHHHH Confidence 333443321 133333 4444322 21223344555667777777888777754332 23346777666656 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCc--cceEEEeCCCccCCHHHHHHHHHHHH-----hcC---- Q lcl|Aclame:pro 398 TYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSA--EHIGVDFDDGVFQDRSALLRFYGQAK-----TFG---- 466 (517) Q Consensus 398 ~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~--~~v~i~f~d~i~~d~~~~~~~~~~~~-----~~G---- 466 (517) ...-+.+++..|..-+.++++.=|-|- +.+....+.. ..|.++|...---.+..+++.+.+-. ..+ T Consensus 403 F~KFI~rLR~rFs~lf~~~L~~qLilK---giit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGk 479 (524) T protein:vir:10 403 FAKWIRQLQNKFEEIFLDPLKTNLILK---KIITEDEWEREINNIKVTFNRDSYFSEMKDAEIMERRINMLTMAEPFIGK 479 (524) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhc---cCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhcc Confidence 666777888888888888877765432 2222222322 45777776554444444444333211 112 Q ss_pred CCCHHHHHHhhCCCCHHHHHHHHHHHHHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 467 FIPTVEAIQRIFKVPKKTAEQWLEEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 467 ~~S~~~~l~~~~~~~eeea~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) ..|.+...++...+||+|.+++.+.|++|..+.--...+ -++| T Consensus 480 y~s~~yi~k~ILr~tDeei~~~~k~I~~E~k~~~~~~~~--------~~~~ 522 (524) T protein:vir:10 480 YISHQTAMKDFLQMTDEEINQEAKQIEEESKEARFQNPD--------EEEE 522 (524) T ss_pred cchhHHHHHHHhccCHHHHHHHHHHHHHHhhcCCCCCCC--------hhhh Confidence 458888777788999999999999999987532111110 0111 No 238 >protein:vir:93610 Length: 454 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:157 # MgeName: phi 4795 # Cross-refs: genbank:acc:YP_001449295;genbank:gi:157166043;interpro:IPR006427;interpro:IPR006944;uniprot:Q6H9U6;genbank:GeneID:5580432 Probab=92.41 E-value=0.012 Score=31.21 Aligned_cols=402 Identities=13% Similarity=0.135 Sum_probs=158.9 Q ss_pred hHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHH-HhcCCCcccccccccCccccccccccChH----- Q lcl|Aclame:pro 3 VIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLR-QYEGDYPQVEYINSQGKIQERDYMTLNLR----- 76 (517) Q Consensus 3 ~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~-~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~----- 76 (517) ||. +|++.. +..+ ....+++.-...+-.|.. -|.|- + ..|..... ...+..+ T Consensus 1 ~~~----~~~~~~-----~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~--~-----~~g~~v~~-~~al~~~~V~~~ 58 (454) T protein:vir:93 1 MWN----LLRRTR-----KNQK-----SGRDVREAGWTSLFQAVAEPFAGA--W-----QQGVKADP-EAVLSFHAVFAC 58 (454) T ss_pred CCC----ccccCc-----cccc-----ccccccchhhhhhhhhhhhhhcch--h-----hcCcccCh-HHhhccHHHHHH Confidence 442 222100 0000 000111111111111111 12121 0 00000000 0111111 Q ss_pred -HHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeC-Cee- Q lcl|Aclame:pro 77 -KLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDN-GEI- 153 (517) Q Consensus 77 -~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~-g~~- 153 (517) ..||+..|+| |..+.-.+.+.... ..........+.+--.......-++.++.+.+..|.+++.+..+. |++ T Consensus 59 v~~Ia~~iA~l----p~~~~~~~~~g~~~-~~~~~~~~~L~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~~~G~~~ 133 (454) T protein:vir:93 59 ISLISQDIAKM----RLRLMQTDAQGIRR-ETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIK 133 (454) T ss_pred HHHHHHhhccC----ceEEEEeccCCccc-hhhhHHHHHHHhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcEE Confidence 4566666655 33331111110000 000011111111100011122334445567778899888887763 554 Q ss_pred EEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccc Q lcl|Aclame:pro 154 EFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLE 233 (517) Q Consensus 154 ~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~ 233 (517) .+..++|+++-++..+++. .+|+-. .. .....|..+. T Consensus 134 ~L~~i~~~~v~v~~~~~g~------------------~~y~~~----~~-------------------~~~~~~~~~~-- 170 (454) T protein:vir:93 134 ELRILDWNRVEPLVADDGE------------------VFYRIT----PD-------------------RNCGITEAVT-- 170 (454) T ss_pred EEEEEcCcceEEEEcCCCc------------------EEEEEE----ec-------------------cccccceeEE-- Confidence 5777888877664322221 111100 00 0000000000 Q ss_pred cccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhc-cceeec--chHHh Q lcl|Aclame:pro 234 ELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMG-QRTVFV--SDVML 310 (517) Q Consensus 234 ~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~-~~~i~v--~~~~l 310 (517) ++ +. -+.||+.+. ..+..+|+|.+..+...|.....+-....+-|+.| ++.-++ |..+ T Consensus 171 -~~---~~----------eViH~k~~~----~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l- 231 (454) T protein:vir:93 171 -VP---AR----------EVIHDRFNC----FFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSI- 231 (454) T ss_pred -ec---Cc----------ceEEeccCC----CCCCceeccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEecCCCC- Confidence 00 00 134555321 12345799998888777765544443334445554 333332 2111 Q ss_pred ccCCCCcccccCccCCcccceeeeecCC-----CCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCcc Q lcl|Aclame:pro 311 RTVPDESGMPPPQVFDPDVNVYKSIRMG-----TDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSM 385 (517) Q Consensus 311 ~~~~~~~~~~~~~~fd~~~~~y~~~~~~-----~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~ 385 (517) . +.........|. ..|.+-+.+ +++..++.++..-...++.+..+.....|+...|++|..+|+..++. T Consensus 232 ~---~e~~~~~~~~~~---~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~t 305 (454) T protein:vir:93 232 T---EENAKKLKSNWD---SGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPS 305 (454) T ss_pred C---HHHHHHHHHHHH---HHhcccccCCceeccCCceEEEcccChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCCc Confidence 0 000001111111 111110100 12234555555555667778777778899999999999998654432 Q ss_pred c-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHh Q lcl|Aclame:pro 386 K-TATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKT 464 (517) Q Consensus 386 ~-TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~ 464 (517) . ++.+. .+..++.+|.-++..|-...+. .+.. .....+.+++++-+..|..+.++...+++. T Consensus 306 ~sn~e~~-------------~~~f~~~~l~P~~~~ie~~ln~-~L~~---~~~~~~~f~~~~ll~~D~~~r~~~~~~~~~ 368 (454) T protein:vir:93 306 SDNVEAL-------------EQQYYSQCLQTLIESIELLLDE-ALET---GENESTEFDVTTLLRMDSERRMKTLGDAVK 368 (454) T ss_pred chhHHHH-------------HHHHHHHHHHHHHHHHHHHHHH-hhcC---CCCcEEEeechhhhccCHHHHHHHHHHHHh Confidence 1 21111 1112222333333322211111 1211 123457777777777899999999999999 Q ss_pred cCCCCHHHHHHhhCCCCHHH-HHH--------HHHHHHHhccccCCCC-Ccc---c--cCCCCCCCCC Q lcl|Aclame:pro 465 FGFIPTVEAIQRIFKVPKKT-AEQ--------WLEEIRKDQIELDPVT-ISQ---R--AQKRMFGDEE 517 (517) Q Consensus 465 ~G~~S~~~~l~~~~~~~eee-a~~--------el~~i~~E~~~~~~~~-~~~---~--~~~~~~G~ee 517 (517) +|+|+.-+++.. .|+..-+ .++ -+..+.+.+...+|.. .++ . +..+..|+++ T Consensus 369 ~G~~T~NE~R~~-~gl~pi~ggD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 435 (454) T protein:vir:93 369 NTLLTPNEARKR-ENLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGNKA 435 (454) T ss_pred CCCcCHHHHHHH-hCCCCCCCCCeeeeccCccchHhhhccCcccCCCCCCccCCCCCCCCCCCCCCCC Confidence 999999986653 3543210 111 1112221111111111 111 1 1111122222 No 239 >protein:vir:78161 Length: 355 # NCBI annotation: hypothetical protein # Family: family:all:2372 # MgeID: mge:1847 # MgeName: Min1 # Cross-refs: genbank:acc:YP_001294798;genbank:gi:149882819;genbank:GeneID:5309189 Probab=92.30 E-value=0.012 Score=31.12 Aligned_cols=298 Identities=7% Similarity=-0.047 Sum_probs=109.9 Q ss_pred EEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccccCCCCcc Q lcl|Aclame:pro 163 FYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEGMQEK 242 (517) Q Consensus 163 ~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~ 242 (517) |+-+.|.. .++......|.+.-... +..-.|. .+. ..+.+........+. T Consensus 1 v~Eivw~~----------------~~g~~~~~~l~~r~~~~---------~~~f~~~-~~~----~l~~~~~~~~~g~~~ 50 (355) T protein:vir:78 1 MFEQVYRI----------------ENGRARLGKLAWRPPRT---------ISRFDVA-PDG----GLVAIEQWGVFGKAT 50 (355) T ss_pred CeEEEEEe----------------eCCeEEEeeeeecCccc---------eeeeeec-cCC----ceeEEEecCCCCCCc Confidence 22222211 11111122222111100 0000011 000 011110000000000 Q ss_pred eEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHH-h--ccceeecchHHhccCCCCccc Q lcl|Aclame:pro 243 TYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIK-M--GQRTVFVSDVMLRTVPDESGM 319 (517) Q Consensus 243 ~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~-~--~~~~i~v~~~~l~~~~~~~~~ 319 (517) +.+...+ |+.++. +....+|+|.|.+..|.-..--=...+..|+.-++ . +-+...+|...-..+.+.... T Consensus 51 ~~lp~~k---fi~~~~----~~~~g~p~G~gLlr~~~w~~~fK~~~~~~w~~f~Er~g~g~p~~~~~~~~~~~~~d~~~~ 123 (355) T protein:vir:78 51 VRIPVDR---LVVFVN----EREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARA 123 (355) T ss_pred ceeccCC---EEEEEe----CCCCCCccchhhHHHHHHHHHHHHhhHHHHHHHHHHcCCCceEEEecCCCCcccchhhhH Confidence 0111111 333321 22457799999998887543333333344443332 2 444444443211111100000 Q ss_pred cc------------CccCCcccceeeeecCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCC--C-c Q lcl|Aclame:pro 320 PP------------PQVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDG--R-S 384 (517) Q Consensus 320 ~~------------~~~fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~--~-~ 384 (517) .. ...+..+......+. .+..++.++.......+.+.++.+=++|+. +-++ +|+..++ + | T Consensus 124 ~~~~~~~~~~l~~~~~~i~~g~~a~~iip---~g~~ie~~ea~g~~~~~~~~i~~~d~~Isk-~iLG-qtlTs~~~~~gG 198 (355) T protein:vir:78 124 EQWLNDQKEEGLQLAKEFRAGEAAGGYIP---HGANFTLTGVQGKLPEMDGPIRYHDEQIAR-AVLA-HFLTLGGDKSTG 198 (355) T ss_pred HHHHHHHHHHHHHHHHHhhCCcceeEeec---CCceEEEeecCCCcccHHHHHHHHHHHHHH-HHhh-hhhccccCCccc Confidence 00 000000000111111 122345554444444455556555555533 3344 3433221 1 2 Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHH Q lcl|Aclame:pro 385 MKTATEIVSENDLTYRTRNDHVYEVEQFIK-GLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAK 463 (517) Q Consensus 385 ~~TAtei~a~~~~~~~t~~~~~~~~~~al~-~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~ 463 (517) .-.+.++ -..-....+..-.+.+...|. +|++-++.+ ++ +.. ..-+.+.|+. +..+..+.++.+.+++ T Consensus 199 S~Alg~v--h~~v~~~~~~aD~~~i~~~ln~~li~~l~~l----N~-~~~---~~~P~~~~~~-~~~~~~~~a~~~~~l~ 267 (355) T protein:vir:78 199 SYALGDT--FASFFTGSLNAVMKHIADVTQQHVVEDLVDQ----NW-GPE---EPAPRLVPAQ-LGKEQPVTAEAIRALV 267 (355) T ss_pred hhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cC-CCC---CCCCEEEecC-cChhHHHHHHHHHHHH Confidence 1111222 112222334445666777775 577776643 21 211 2224567765 5666677788889999 Q ss_pred hcCCCCH----HHHHHhhCCCCHHHHH-HHHHHHHHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 464 TFGFIPT----VEAIQRIFKVPKKTAE-QWLEEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 464 ~~G~~S~----~~~l~~~~~~~eeea~-~el~~i~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) ..|+... +.++.+.+|+.+.+.. +++. ..++..+......+..+.....| T Consensus 268 ~~G~~~~~~~~~~~~~e~~gip~p~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 322 (355) T protein:vir:78 268 ECGAFTADPELEKDLRARYGLPAPAERDDGAD----AAAAKAAGRRRAKRLPGQRQGAA 322 (355) T ss_pred hCCCccccHHHHHHHHHHhCCCCCCCCCcccC----CccccccccccccccCCcccccc Confidence 9997543 4688889998543211 1111 11111111111222222111111 No 240 >protein:vir:99312 Length: 563 # NCBI annotation: putative portal protein # Family: family:all:2446 # MgeID: mge:1655 # MgeName: K # Cross-refs: genbank:acc:YP_024471;genbank:gi:48696430;genbank:GeneID:2948040 Probab=92.16 E-value=0.013 Score=31.00 Aligned_cols=437 Identities=11% Similarity=0.065 Sum_probs=157.5 Q ss_pred HHHHHHHHH--HHhhc-ccchhhh--ccc-----cCcCCHHHHHHHHHHHHHhcCCCcccc-----------cccccC-- Q lcl|Aclame:pro 7 IKNFFKRGG--YALSG-QTLKSIN--DHE-----KINIDPNELARIERNLRQYEGDYPQVE-----------YINSQG-- 63 (517) Q Consensus 7 ik~~~~~~~--~~~~~-~~~~~~~--~~~-----~i~~~~~~~~~i~~~~~~Y~g~~~~~~-----------~~~~~~-- 63 (517) +-.+|++.- .-.+- +.++.+- |.. .|...+.|.+-|+.- ....++.... ++...+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 78 (563) T protein:vir:99 1 MADLFKQFRLGKDYGNNSTIAQVPIDEGLQANIKKIEQDNKEYQDLTKS--LYGQQQAYAEPFIEMMDTNPEFRDKRSYM 78 (563) T ss_pred ChhhhhhhhcccccccccccceeeccCChhhhHhhhhccchhHHHHHhh--hccCCCcchhhhHhhhcccccccccccCC Confidence 222222111 00111 1111111 100 001111222222221 1111110000 000000 Q ss_pred -ccc-----cccccccChHHHHHHHHhhhhcCCcc-----------eeEecCcccccccccchhHHHHHHHHHH----hh Q lcl|Aclame:pro 64 -KIQ-----ERDYMTLNLRKLSADVLSGLVFNEQC-----------EVYVSDAKDEEKKDNSFKTAHEFIQHVF----QH 122 (517) Q Consensus 64 -~~~-----~~~~~~ln~~~~i~~~~A~ll~~e~~-----------~i~~~~~~~~~~~~~~~~~~~~~l~~~l----~~ 122 (517) ... -+.....++...+++..|+.+..-.| .|.+-+.... ..+ ........|...| .+ T Consensus 79 ~~~~~l~~~l~~~~~n~i~~~~I~t~~~~vA~~~~~~~~~~~~~~~~i~l~~~~~~-~~~-~~~~~~~~l~~~l~~~~~~ 156 (563) T protein:vir:99 79 KNEHNLHDVLKKFGNNPILNAIILTRSNQVAMYCQPARYSEKGLGFEVRLRDLDAE-PGR-KEKEEMKRIEDFIVNTGKD 156 (563) T ss_pred CCcccHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhhhhhcccccceeEEeecCCC-cch-hhhhhhHHHHHHhhhcCCC Confidence 000 00000112233333444433321111 1111111100 000 0011112233222 11 Q ss_pred -----hhHHHHHHHHHHHHHhhCCEEEEEEEe-C--Ce-eEEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEE Q lcl|Aclame:pro 123 -----NKFIKNLSDYLEPTFALGGLTVRPYVD-N--GE-IEFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYY 193 (517) Q Consensus 123 -----n~f~~~~~~~~~~a~~~G~~~~k~~~d-~--g~-~~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~y 193 (517) ..|..-++.++.+.+..|.+++-+.+. + |+ ..+..++|..+.++..+.+..... ...| T Consensus 157 ~~p~~~t~~~f~~~lv~~lll~Gn~~~~~~~~rd~~G~~~~L~pl~p~~V~v~~~~~g~~~~~-------------~~~y 223 (563) T protein:vir:99 157 KDVDRDSFQTFCKKIVRDTYIYDQVNFEKVFNKNNKTKLEKFIAVDPSTIFYATDKKGKIIKG-------------GKRF 223 (563) T ss_pred CCCCcchHHHHHHHHHHHHHhcCCeEEEEEEEecCCCceEEEEEeCCceeEEEECCCCceecc-------------ceeE Confidence 135566667788889999888877654 2 44 357778888887753322221100 0001 Q ss_pred EEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcc Q lcl|Aclame:pro 194 TLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLG 273 (517) Q Consensus 194 t~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S 273 (517) +. +..+.. ...++ +.++ +.++++|..+ ....++|+| T Consensus 224 ~~----------------------~~~g~~---~~~~~--------~~ev---------I~~~~~~~~d--~~~~~~G~S 259 (563) T protein:vir:99 224 VQ----------------------VVDKRV---VASFT--------SREL---------AMGIRNPRTE--LSSSGYGLS 259 (563) T ss_pred EE----------------------EeCCce---eEEec--------Ccce---------EEEeccCCCC--cccCcccch Confidence 00 000000 00000 0011 1122332221 123568999 Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhc-cceee--cchHHhccCCCCcccccCccCCcccceeeeec-------CCCCCCc Q lcl|Aclame:pro 274 ITDNSVSTLKKINDTYDQFWWEIKMG-QRTVF--VSDVMLRTVPDESGMPPPQVFDPDVNVYKSIR-------MGTDEEF 343 (517) Q Consensus 274 ~~~~~~~lid~lD~~~s~~~~e~~~~-~~~i~--v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~-------~~~~~~~ 343 (517) .+.-+...|.....+-.-..+-|+.| .+.-+ +|...- ..+..-......|.. .|.+.+ .-+++-. T Consensus 260 pi~~a~~~i~~~~~~~~~~~~~f~ng~~p~giL~~~~~~~--ls~e~~~~~~~~~~~---~~~G~~nagk~~~vl~~G~~ 334 (563) T protein:vir:99 260 EVEIAMKEFIAYNNTESFNDRFFSHGGTTRGILQIRSDQQ--QSQHALENFKREWKS---SLSGINGSWQIPVVMADDIK 334 (563) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCC--CCHHHHHHHHHHHHH---HhccccccccceEEcCCCce Confidence 99888877765544444444555654 44422 221110 000000000111110 111110 0122233 Q ss_pred ceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 344 VKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKT-ATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLE 422 (517) Q Consensus 344 v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~T-Atei~a~~~~~~~t~~~~~~~~~~al~~li~~il~ 422 (517) ++.++......++.+..+...+.|+...|++|..+|+...+..+ +.+..+..+... -...+..++.+|.-++..|.. T Consensus 335 ~~~l~~~~~d~qfle~~~~~~~~Ia~afgVPp~~lG~~~~~~~~~~~~~ss~~~sn~--e~~~~~f~~~tL~P~l~~ie~ 412 (563) T protein:vir:99 335 FVNMTPTANDMQFEKWLNYLINIISALYGIDPAEIGFPNRGGATGSKGGSTLNEADP--GKKQQQSQNKGLQPLLRFIED 412 (563) T ss_pred EEeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHccccccccccccccccchhhccH--HHHHHHHHHHHHHHHHHHHHH Confidence 44555555667788888888899999999999999986544322 111111111100 011223344444444444333 Q ss_pred HHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCCHHHHHHhhCCCCHHH-HHHHH-----HHHH--- Q lcl|Aclame:pro 423 LAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTVEAIQRIFKVPKKT-AEQWL-----EEIR--- 493 (517) Q Consensus 423 ~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~~~l~~~~~~~eee-a~~el-----~~i~--- 493 (517) ..+. .++.. ....+.+.|..+-..+.. ++....+++.+|+|+.-+++. ..|+..-+ .+.-+ ..+. T Consensus 413 ~ln~-~L~~~---~~~~~~~~f~r~D~~~~~-e~~~~~~~~~~G~lT~NE~R~-~~gl~Pi~gGD~~~~~~~~~~~~~~~ 486 (563) T protein:vir:99 413 LVNR-HIISE---YGDKYTFQFVGGDTKSAT-DKLNILKLETQIFKTVNEARE-EQGKKPIEGGDIILDASFLQGTAQLQ 486 (563) T ss_pred HHHh-hhchh---cccccEEEeccCCHHHHH-HHHHHHHHhcCCccCHHHHHH-HhCCCCCCCcceeecccccccccccc Confidence 2221 12111 123466777665333322 222344567889999998655 34543211 11000 0000 Q ss_pred -----Hhccc---------cCCCCCccccC-CCCCCCCC Q lcl|Aclame:pro 494 -----KDQIE---------LDPVTISQRAQ-KRMFGDEE 517 (517) Q Consensus 494 -----~E~~~---------~~~~~~~~~~~-~~~~G~ee 517 (517) +++.. ..+.+.+..+. +...+.++ T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (563) T protein:vir:99 487 QDKQYNDGKQKERLQMMMSLLEGDNDDSEEGQSTDSSND 525 (563) T ss_pred cccCCCccccchhhhhcccccCCCCCCCCCCCCCCCCCC Confidence 00000 00000000000 00011111 No 241 >protein:vir:95599 Length: 563 # NCBI annotation: ORF014 # Family: family:all:2446 # MgeID: mge:1577 # MgeName: G1 # Cross-refs: genbank:acc:YP_240900;genbank:gi:66394963;genbank:GeneID:5132540 Probab=92.16 E-value=0.013 Score=31.00 Aligned_cols=437 Identities=11% Similarity=0.065 Sum_probs=157.5 Q ss_pred HHHHHHHHH--HHhhc-ccchhhh--ccc-----cCcCCHHHHHHHHHHHHHhcCCCcccc-----------cccccC-- Q lcl|Aclame:pro 7 IKNFFKRGG--YALSG-QTLKSIN--DHE-----KINIDPNELARIERNLRQYEGDYPQVE-----------YINSQG-- 63 (517) Q Consensus 7 ik~~~~~~~--~~~~~-~~~~~~~--~~~-----~i~~~~~~~~~i~~~~~~Y~g~~~~~~-----------~~~~~~-- 63 (517) +-.+|++.- .-.+- +.++.+- |.. .|...+.|.+-|+.- ....++.... ++...+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 78 (563) T protein:vir:95 1 MADLFKQFRLGKDYGNNSTIAQVPIDEGLQANIKKIEQDNKEYQDLTKS--LYGQQQAYAEPFIEMMDTNPEFRDKRSYM 78 (563) T ss_pred ChhhhhhhhcccccccccccceeeccCChhhhHhhhhccchhHHHHHhh--hccCCCcchhhhHhhhcccccccccccCC Confidence 222222111 00111 1111111 100 001111222222221 1111110000 000000 Q ss_pred -ccc-----cccccccChHHHHHHHHhhhhcCCcc-----------eeEecCcccccccccchhHHHHHHHHHH----hh Q lcl|Aclame:pro 64 -KIQ-----ERDYMTLNLRKLSADVLSGLVFNEQC-----------EVYVSDAKDEEKKDNSFKTAHEFIQHVF----QH 122 (517) Q Consensus 64 -~~~-----~~~~~~ln~~~~i~~~~A~ll~~e~~-----------~i~~~~~~~~~~~~~~~~~~~~~l~~~l----~~ 122 (517) ... -+.....++...+++..|+.+..-.| .|.+-+.... ..+ ........|...| .+ T Consensus 79 ~~~~~l~~~l~~~~~n~i~~~~I~t~~~~vA~~~~~~~~~~~~~~~~i~l~~~~~~-~~~-~~~~~~~~l~~~l~~~~~~ 156 (563) T protein:vir:95 79 KNEHNLHDVLKKFGNNPILNAIILTRSNQVAMYCQPARYSEKGLGFEVRLRDLDAE-PGR-KEKEEMKRIEDFIVNTGKD 156 (563) T ss_pred CCcccHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhhhhhcccccceeEEeecCCC-cch-hhhhhhHHHHHHhhhcCCC Confidence 000 00000112233333444433321111 1111111100 000 0011112233222 11 Q ss_pred -----hhHHHHHHHHHHHHHhhCCEEEEEEEe-C--Ce-eEEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEE Q lcl|Aclame:pro 123 -----NKFIKNLSDYLEPTFALGGLTVRPYVD-N--GE-IEFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYY 193 (517) Q Consensus 123 -----n~f~~~~~~~~~~a~~~G~~~~k~~~d-~--g~-~~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~y 193 (517) ..|..-++.++.+.+..|.+++-+.+. + |+ ..+..++|..+.++..+.+..... ...| T Consensus 157 ~~p~~~t~~~f~~~lv~~lll~Gn~~~~~~~~rd~~G~~~~L~pl~p~~V~v~~~~~g~~~~~-------------~~~y 223 (563) T protein:vir:95 157 KDVDRDSFQTFCKKIVRDTYIYDQVNFEKVFNKNNKTKLEKFIAVDPSTIFYATDKKGKIIKG-------------GKRF 223 (563) T ss_pred CCCCcchHHHHHHHHHHHHHhcCCeEEEEEEEecCCCceEEEEEeCCceeEEEECCCCceecc-------------ceeE Confidence 135566667788889999888877654 2 44 357778888887753322221100 0001 Q ss_pred EEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcc Q lcl|Aclame:pro 194 TLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLG 273 (517) Q Consensus 194 t~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S 273 (517) +. +..+.. ...++ +.++ +.++++|..+ ....++|+| T Consensus 224 ~~----------------------~~~g~~---~~~~~--------~~ev---------I~~~~~~~~d--~~~~~~G~S 259 (563) T protein:vir:95 224 VQ----------------------VVDKRV---VASFT--------SREL---------AMGIRNPRTE--LSSSGYGLS 259 (563) T ss_pred EE----------------------EeCCce---eEEec--------Ccce---------EEEeccCCCC--cccCcccch Confidence 00 000000 00000 0011 1122332221 123568999 Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhc-cceee--cchHHhccCCCCcccccCccCCcccceeeeec-------CCCCCCc Q lcl|Aclame:pro 274 ITDNSVSTLKKINDTYDQFWWEIKMG-QRTVF--VSDVMLRTVPDESGMPPPQVFDPDVNVYKSIR-------MGTDEEF 343 (517) Q Consensus 274 ~~~~~~~lid~lD~~~s~~~~e~~~~-~~~i~--v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~-------~~~~~~~ 343 (517) .+.-+...|.....+-.-..+-|+.| .+.-+ +|...- ..+..-......|.. .|.+.+ .-+++-. T Consensus 260 pi~~a~~~i~~~~~~~~~~~~~f~ng~~p~giL~~~~~~~--ls~e~~~~~~~~~~~---~~~G~~nagk~~~vl~~G~~ 334 (563) T protein:vir:95 260 EVEIAMKEFIAYNNTESFNDRFFSHGGTTRGILQIRSDQQ--QSQHALENFKREWKS---SLSGINGSWQIPVVMADDIK 334 (563) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCC--CCHHHHHHHHHHHHH---HhccccccccceEEcCCCce Confidence 99888877765544444444555654 44422 221110 000000000111110 111110 0122233 Q ss_pred ceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 344 VKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKT-ATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLE 422 (517) Q Consensus 344 v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~T-Atei~a~~~~~~~t~~~~~~~~~~al~~li~~il~ 422 (517) ++.++......++.+..+...+.|+...|++|..+|+...+..+ +.+..+..+... -...+..++.+|.-++..|.. T Consensus 335 ~~~l~~~~~d~qfle~~~~~~~~Ia~afgVPp~~lG~~~~~~~~~~~~~ss~~~sn~--e~~~~~f~~~tL~P~l~~ie~ 412 (563) T protein:vir:95 335 FVNMTPTANDMQFEKWLNYLINIISALYGIDPAEIGFPNRGGATGSKGGSTLNEADP--GKKQQQSQNKGLQPLLRFIED 412 (563) T ss_pred EEeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHccccccccccccccccchhhccH--HHHHHHHHHHHHHHHHHHHHH Confidence 44555555667788888888899999999999999986544322 111111111100 011223344444444444333 Q ss_pred HHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCCHHHHHHhhCCCCHHH-HHHHH-----HHHH--- Q lcl|Aclame:pro 423 LAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTVEAIQRIFKVPKKT-AEQWL-----EEIR--- 493 (517) Q Consensus 423 ~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~~~l~~~~~~~eee-a~~el-----~~i~--- 493 (517) ..+. .++.. ....+.+.|..+-..+.. ++....+++.+|+|+.-+++. ..|+..-+ .+.-+ ..+. T Consensus 413 ~ln~-~L~~~---~~~~~~~~f~r~D~~~~~-e~~~~~~~~~~G~lT~NE~R~-~~gl~Pi~gGD~~~~~~~~~~~~~~~ 486 (563) T protein:vir:95 413 LVNR-HIISE---YGDKYTFQFVGGDTKSAT-DKLNILKLETQIFKTVNEARE-EQGKKPIEGGDIILDASFLQGTAQLQ 486 (563) T ss_pred HHHh-hhchh---cccccEEEeccCCHHHHH-HHHHHHHHhcCCccCHHHHHH-HhCCCCCCCcceeecccccccccccc Confidence 2221 12111 123466777665333322 222344567889999998655 34543211 11000 0000 Q ss_pred -----Hhccc---------cCCCCCccccC-CCCCCCCC Q lcl|Aclame:pro 494 -----KDQIE---------LDPVTISQRAQ-KRMFGDEE 517 (517) Q Consensus 494 -----~E~~~---------~~~~~~~~~~~-~~~~G~ee 517 (517) +++.. ..+.+.+..+. +...+.++ T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (563) T protein:vir:95 487 QDKQYNDGKQKERLQMMMSLLEGDNDDSEEGQSTDSSND 525 (563) T ss_pred cccCCCccccchhhhhcccccCCCCCCCCCCCCCCCCCC Confidence 00000 00000000000 00011111 No 242 >protein:vir:8317 Length: 409 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:154 # MgeName: Corndog # Cross-refs: genbank:acc:NP_817885;genbank:gi:29566318;genbank:GeneID:1259513 Probab=91.27 E-value=0.017 Score=30.34 Aligned_cols=368 Identities=13% Similarity=0.045 Sum_probs=145.3 Q ss_pred HHHHhhcccchhhhccccCc----------------CCH-HHHHHHHHHHHH--hcCCCcccccccccCcccccc-cccc Q lcl|Aclame:pro 14 GGYALSGQTLKSINDHEKIN----------------IDP-NELARIERNLRQ--YEGDYPQVEYINSQGKIQERD-YMTL 73 (517) Q Consensus 14 ~~~~~~~~~~~~~~~~~~i~----------------~~~-~~~~~i~~~~~~--Y~g~~~~~~~~~~~~~~~~~~-~~~l 73 (517) |+-+-..+.+-.+.+.++=+ =++ .-..+-..|... +.|.+..+.. ..+...... ...+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~t~~~~~~~ 78 (409) T protein:vir:83 1 MGFWSNLFGIPSIPDLPNDNGPVDYNPGDPDMVEFRGPEEEPEARALPWIRPTAWSGYPESWAT--PSWGSAQDKLRTLI 78 (409) T ss_pred CchhhhhcccccCCCcccccccccccCCCCceeeccCCCcchhhhhcccccccccccccccccc--cCccccchhhHhhh Confidence 55444434332222221000 000 111111223221 1222111100 011111111 1111 Q ss_pred ChH----HHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhh--hHHHHHHHHHHHHHhhCCEEEEEE Q lcl|Aclame:pro 74 NLR----KLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHN--KFIKNLSDYLEPTFALGGLTVRPY 147 (517) Q Consensus 74 n~~----~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n--~f~~~~~~~~~~a~~~G~~~~k~~ 147 (517) ..- +.|++..|+| |..+.-.+...+ .....++. .-| --...+.+.+...+.+|++++.+. T Consensus 79 ~~v~acV~~Ia~~iA~l----pl~~~~~~~~~~--------~~~~ll~~--~PN~~~t~~~f~~~l~~~lllGnay~~~i 144 (409) T protein:vir:83 79 DVAWACIDLNASVLSSM----PIYRMRNGRIID--------SVAWMSNP--DPEVYTSWQEFAKQLFWDFQLGEAFVLPM 144 (409) T ss_pred HHHHHHHHHHHHhhccC----ceEEeeCCcccc--------chhhhccc--CCCCCCCHHHHHHHHHHHHhhCCcEEEEE Confidence 111 4555555554 322211111111 11111110 011 011233333444445688776544 Q ss_pred -Ee-CCee-EEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCcc Q lcl|Aclame:pro 148 -VD-NGEI-EFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEG 224 (517) Q Consensus 148 -~d-~g~~-~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~ 224 (517) .+ +|.+ .+..++|+.+-+.. +.+ +..+ |+|... + T Consensus 145 ~r~~~G~~~~L~pl~p~~v~v~~-~~~-----------------g~~~------------------y~~~~~-~------ 181 (409) T protein:vir:83 145 AHGSDGYPIRFRVVPPWLVNVEL-KKG-----------------ARRE------------------YRIGGL-N------ 181 (409) T ss_pred EECCCCcEEEEEEECCcceEEEE-cCC-----------------ceEE------------------EEEccc-c------ Confidence 34 3543 45666666554321 111 1111 111100 0 Q ss_pred ccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHH-Hhc-cce Q lcl|Aclame:pro 225 EIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEI-KMG-QRT 302 (517) Q Consensus 225 ~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~-~~~-~~~ 302 (517) .+.+ +.|||.+.+ .+..+|+|-+.-+...|+.. ....++...+ +.| ++. T Consensus 182 --------------~~~e----------iiHir~~~~----~~~~~G~spi~~~~~~i~~~-~a~~~~~~~~f~nga~p~ 232 (409) T protein:vir:83 182 --------------VTDE----------ILHIRYQGN----TADAHGHGPLESAAPRQVVI-GLLQKYVQNLAETGGVPL 232 (409) T ss_pred --------------Cccc----------eEEeCCCCC----CCCcccccHHHHHHHHHHHH-HHHHHHHHHHHhcCCCcc Confidence 0011 345553211 13346999888777777644 3445555544 543 333 Q ss_pred eecchHHhccCCCCccc---ccCccCCcccceeee-----ecCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCC Q lcl|Aclame:pro 303 VFVSDVMLRTVPDESGM---PPPQVFDPDVNVYKS-----IRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLS 374 (517) Q Consensus 303 i~v~~~~l~~~~~~~~~---~~~~~fd~~~~~y~~-----~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s 374 (517) -++ .....-... .....|. ..|.. +-..++....+.++..-...++.+..+...++|+...|++ T Consensus 233 gil-----~~~~~ls~e~~~~~~~~~~---~~~~~nag~~~il~~g~~~~~~~~~s~~d~q~le~r~~~~~eIa~~fgVP 304 (409) T protein:vir:83 233 YWL-----GVERRLSETEAVDLMDRWI---ESRSKYAGHPALVTGGATLNQAKSMSAQDLSLMELTQFNEARIAILLGVP 304 (409) T ss_pred eEe-----ecCCCCCHHHHHHHHHHHH---HhhCCccCccceecCCcccccccCCCHHHHHHHHHHHhhHHHHHHHhCCC Confidence 332 221111100 0000010 00110 0011111111222333344567777777788899999999 Q ss_pred ccccccCCCc-cchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCH Q lcl|Aclame:pro 375 VGTFSFDGRS-MKTATEIVSENDLTY-RTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDR 452 (517) Q Consensus 375 ~~~~~~~~~~-~~TAtei~a~~~~~~-~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~ 452 (517) |..+|..+.+ ..|-..+.......+ .++.-+...++.+|.. .++ ...+.+.+++++-+..|. T Consensus 305 p~llg~~~~~~~~tysn~eq~~~~f~~~tL~P~~~~ie~~l~~------------~Ll----~~~~~~~f~~~~llr~d~ 368 (409) T protein:vir:83 305 PFLVGLPGATGSLTYSNIEQLFSFHDRSSLRPKATAVMAALDR------------WAL----PSPQHLELNRDDYTRPSL 368 (409) T ss_pred HHHccCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH------------hhC----CCCcEEEeehhhhhccCH Confidence 9999865432 222111222222222 2333344444444332 111 123457777777777888 Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHhhCCCCHHHHHHHHHHHHHhccccCCCCCccccCCCCCCCC Q lcl|Aclame:pro 453 SALLRFYGQAKTFGFIPTVEAIQRIFKVPKKTAEQWLEEIRKDQIELDPVTISQRAQKRMFGDE 516 (517) Q Consensus 453 ~~~~~~~~~~~~~G~~S~~~~l~~~~~~~eeea~~el~~i~~E~~~~~~~~~~~~~~~~~~G~e 516 (517) .+.++.+.+++++|+|+.-++.+ ..|+...+ .. +.-.+||= T Consensus 369 ~~r~~~~~~~~~~G~lT~NE~R~-~~glpp~~-----------------gg-----d~l~~~gv 409 (409) T protein:vir:83 369 VERATAYKIMIEAGVMEPNEARA-MERLHSEA-----------------AA-----VRLSGGGV 409 (409) T ss_pred HHHHHHHHHHHhCCCcCHHHHHH-HhCCCCCC-----------------CC-----cccCCCCC Confidence 88888888999999999888643 32332111 00 00011111 No 243 >protein:vir:6896 Length: 523 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:140 # MgeName: RB69 # Cross-refs: genbank:acc:NP_861872;genbank:gi:32453663;genbank:GeneID:1494298 Probab=90.80 E-value=0.019 Score=30.02 Aligned_cols=431 Identities=13% Similarity=0.137 Sum_probs=188.5 Q ss_pred Cch--HHHHHHHHHHHHHHhh---cccchhhhc------cccCcCC--------------------H---HHHHHHHHHH Q lcl|Aclame:pro 1 MKV--IQRIKNFFKRGGYALS---GQTLKSIND------HEKINID--------------------P---NELARIERNL 46 (517) Q Consensus 1 m~~--~~~ik~~~~~~~~~~~---~~~~~~~~~------~~~i~~~--------------------~---~~~~~i~~~~ 46 (517) |+. .+-.+-|++.--.... .+.+.+++- ...|.++ + ....-|++++ T Consensus 1 m~f~~~~lf~f~~~~de~~~~~~~~~~~~S~~~p~~dDGa~~i~~~~~~~~~~~~~~~q~~y~~~e~~~~~~~eLI~~YR 80 (523) T protein:vir:68 1 MKFNILSLFAPWAKMDERDYKDQEKENLESITSPKLDDGAKEYEVSENEAQQTYNAMFQRMFGSQEPGLKSTRELIDTYR 80 (523) T ss_pred CCCchhhhhhhhhhhhhhhhhhhhhccCCCccccCCCCcceeeeccccccccccchhhhhhhhccccccchHHHHHHHHH Confidence 543 3333445442111000 011111110 0000000 0 1112222333 Q ss_pred HHhcCCCcccccccccCccccccccccChHHHHHHHHhhhhcC----CcceeEecCcccccccccchhHHHHHHHHHHhh Q lcl|Aclame:pro 47 RQYEGDYPQVEYINSQGKIQERDYMTLNLRKLSADVLSGLVFN----EQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQH 122 (517) Q Consensus 47 ~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~~~i~~~~A~ll~~----e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 122 (517) .+... |.+ -..|-.-.-+.++. +++++.+++... .+...++-.+..+.++.- T Consensus 81 ~ma~~--pEv-------------------d~Av~eIVneaiv~d~~~~pV~i~Ld~~~~---s~~iK~kI~eeF~~Il~l 136 (523) T protein:vir:68 81 NLMTN--YEV-------------------DNAVSEIVSDAIVYEDDTEVVSINLDNTKF---SPNIKSMMLDEFNEVLNH 136 (523) T ss_pred HHhhc--cch-------------------hhHHHHhhcceeeecCCCceEEEEeccccc---chHHHHHHHHHHHHHHHH Confidence 32111 111 01121111122222 245555544322 222334455667778877 Q ss_pred hhHHHHHHHHHHHHHhhCCEEEEEEEeCC-----eeEEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEE-E Q lcl|Aclame:pro 123 NKFIKNLSDYLEPTFALGGLTVRPYVDNG-----EIEFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTL-L 196 (517) Q Consensus 123 n~f~~~~~~~~~~a~~~G~~~~k~~~d~g-----~~~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~-l 196 (517) -+|.++..+....+.+.|..+||-++|.. =..+..++|.++-++.---.....++ .+++- . T Consensus 137 l~F~~~~~~~fR~WYVDgRi~fhKiid~k~pk~GI~Elr~lDPr~i~~vr~i~~~~~~g~-------------~vi~~~~ 203 (523) T protein:vir:68 137 LSFQRKGSDHFRRWYVDSRIFFHKIIDPKRPKEGIKELRRLDPRQVQYVREVITTTEAGV-------------KIVKGYK 203 (523) T ss_pred hccchhhhHHHHhheeeeEEEEEEEeeCCCccccceeeeeeCCcceeEEEeecCCCCcch-------------hhhhhhh Confidence 78999999999999999999999999853 34578888888765422100000001 11110 0 Q ss_pred EEEeecceeeccceEEEEEEEeecCCccccCcccccccccCCCCcc-eEEcCCCcceEEEecCCccccccCCCCCCcchh Q lcl|Aclame:pro 197 EFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEGMQEK-TYIQGLSRPLFNYLKPSGFNNINPHSPLGLGIT 275 (517) Q Consensus 197 E~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~-~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~ 275 (517) |++.+.... ..|...-..| ..|+.|- ++.. +++.. .+.+... ...-+|-+ T Consensus 204 e~f~Y~~~~---~~~~~~g~~~------~~~~~ik-------I~~dAI~y~h-----SGL~d~~--------~~~i~gyL 254 (523) T protein:vir:68 204 EYFIYDTSH---ESYACDGRIY------EAGTKIK-------IPKAAIVYAH-----SGLVDCC--------GKNIIGYL 254 (523) T ss_pred hheeecccc---cccccccccc------CCCccee-------cchhheeeee-----ccceeCC--------CCceeccc Confidence 111111000 0000000001 0011111 1111 11100 0011111 01123445 Q ss_pred hhhHHHHHHHHHHHHHHHHHH---Hhccceeec-c---------hHHhcc-----------CCCCcccccCccCCcccce Q lcl|Aclame:pro 276 DNSVSTLKKINDTYDQFWWEI---KMGQRTVFV-S---------DVMLRT-----------VPDESGMPPPQVFDPDVNV 331 (517) Q Consensus 276 ~~~~~lid~lD~~~s~~~~e~---~~~~~~i~v-~---------~~~l~~-----------~~~~~~~~~~~~fd~~~~~ 331 (517) ..|.-.+-.| +..-..+-.+ |.-.+|||- + +.+|+. +..+|.. .|++. T Consensus 255 hkAiKp~NQL-kmlEDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~kNKlvYDa~TGev-------~ddrk 326 (523) T protein:vir:68 255 HRAIKPANQL-KLLEDAVVIYRITRAPDRRVWYVDTGNMPSRKAAEHMQHVMNTMKNRIAYDATTGKI-------KNQQH 326 (523) T ss_pred hhhhHHHHhh-HHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhhcceeEEeccCCee-------ccchh Confidence 5454443333 2233333333 455567763 1 111111 1122111 23333 Q ss_pred eeeecC------CCCCCc--ceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCC--ccchHHHHHHHHHHHHHH Q lcl|Aclame:pro 332 YKSIRM------GTDEEF--VKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGR--SMKTATEIVSENDLTYRT 401 (517) Q Consensus 332 y~~~~~------~~~~~~--v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~--~~~TAtei~a~~~~~~~t 401 (517) ++++.- -+++.+ |+++...=. -.-.+-++-+.+.+....+.+.+-+..+++ ...-++||.-..-....- T Consensus 327 ~msMlEDyWLpRReGgrgTEItTLpGgqn-lgem~DV~YF~kkLy~aLnVP~sRl~~~~~~f~~Gr~~EItRDEikF~KF 405 (523) T protein:vir:68 327 IMSMTEDYWLQRRDGKAVTEVDTLPGADN-TGNMEDVRWFRNALYMALRIPITRIPSDQGGIQFDAGTSITRDELSFGKF 405 (523) T ss_pred hhhhHhhhcccccCCCcccceeeccccCC-cChHHHHHHHHHHHHHHhCCcceeecCCCcceecccccchhHHHHHHHHH Confidence 443321 133333 444433212 123344555666777777777777744332 122356776666555667 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCc--cceEEEeCCCccCCHHHHHHHHHHHH-----hcC----CCCH Q lcl|Aclame:pro 402 RNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSA--EHIGVDFDDGVFQDRSALLRFYGQAK-----TFG----FIPT 470 (517) Q Consensus 402 ~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~--~~v~i~f~d~i~~d~~~~~~~~~~~~-----~~G----~~S~ 470 (517) +.+++..|..-+.++++.=|-|- +.+....+.. ..|.++|...---.+..+++.+.+-. ..+ ..|. T Consensus 406 I~rLR~rFs~lf~~~Lk~qLilK---giit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~s~ 482 (523) T protein:vir:68 406 IRELQHKFEEIFLDPLKTNLILK---GIITEDEWNDEINNIKIKFHRDSYFSELKDAEILERRINMLQMAEPFIGKYISH 482 (523) T ss_pred HHHHHHHHHHHHHHHHHHhhhhc---cCCCHHHHHHHhhcceEeeeecchHHHHHHHHHHHHHHHHHHHhhhhhcccchh Confidence 77788888888888877665432 2222222322 45777776554444444444332211 112 4688 Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 471 VEAIQRIFKVPKKTAEQWLEEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 471 ~~~l~~~~~~~eeea~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) +...++...+||+|.+++.++|++|..+.--...+ -++| T Consensus 483 ~yi~k~ILr~tDeei~~~~kqI~~E~k~~~~~~p~--------~e~~ 521 (523) T protein:vir:68 483 RTAMKDILQMSDEEIEQEAKQIEEESKEARFQDPD--------QEQE 521 (523) T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHhhcCCCCCCc--------hhhh Confidence 88777888999999999999999987542211110 0111 No 244 >protein:vir:94869 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1532 # MgeName: P008 # Cross-refs: genbank:acc:YP_762515;genbank:gi:115304214;genbank:GeneID:5141182 Probab=90.65 E-value=0.02 Score=29.93 Aligned_cols=363 Identities=14% Similarity=0.116 Sum_probs=112.7 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccChHHHHH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLRKLSA 80 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~~~i~ 80 (517) ||||.|++.+++.... ....+...... .++++... .+. .--..|| T Consensus 1 M~if~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~---~v~------------------------------~~v~~Ia 45 (378) T protein:vir:94 1 MNLFGKVVSFSRGKLN-NDTQRVTAWQN-EAVEYTSA---FVT------------------------------NIHNKIA 45 (378) T ss_pred CchhHHhHhhhhcccc-cCcceeeeeec-chhhhhhH---HHH------------------------------HHHHHHH Confidence 9999999998753221 11111110000 00100000 000 0112344 Q ss_pred HHHhhhhcCCcceeEec--CcccccccccchhHHHHHHHH----HHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeC--Ce Q lcl|Aclame:pro 81 DVLSGLVFNEQCEVYVS--DAKDEEKKDNSFKTAHEFIQH----VFQHNKFIKNLSDYLEPTFALGGLTVRPYVDN--GE 152 (517) Q Consensus 81 ~~~A~ll~~e~~~i~~~--~~~~~~~~~~~~~~~~~~l~~----~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~--g~ 152 (517) +..|++=+. .+.-. +.............+...|+. ......|.. ..+.+.+-.|.+++.|.+++ |. T Consensus 46 ~~iA~lp~~---~~~~~~~~~~~~~~~~~~~~~l~~lLn~~PN~~~t~~~f~~---~~~~~lll~Gnayi~~i~~~~~g~ 119 (378) T protein:vir:94 46 NEITKVEFN---HVKYKKSDVGSDTLISMAGSDLDEVLNWSSKGERNSMEFWQ---KVIKKLLTTRYIDLYPIFDSETGE 119 (378) T ss_pred HhHhhCcee---eeeecccccccccccccccchHHHHHhhcCCCCCCHHHHHH---HHHHHHhhcCCeEEEEEeeCCCCc Confidence 444433110 00000 000000000000111111110 000012222 23444555677776554432 22 Q ss_pred eEEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCccccc Q lcl|Aclame:pro 153 IEFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPL 232 (517) Q Consensus 153 ~~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l 232 (517) +... +| .+ +++.|..-+. .+|.+-++.+. .. . ++ T Consensus 120 ~~~~-------~~--~~-------------------~~~~~~~~dv------------ih~~~~~~~~~-~~---~--~~ 153 (378) T protein:vir:94 120 LLDL-------LF--AN-------------------DKKEYKPEEL------------VRLTSPFYINE-DT---S--IL 153 (378) T ss_pred EEEE-------EE--ec-------------------CcEEechhce------------eeecCcCCccc-ch---h--HH Confidence 1100 00 00 0000100000 01110000000 00 0 00 Q ss_pred ccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccc--eeecchHHh Q lcl|Aclame:pro 233 EELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQR--TVFVSDVML 310 (517) Q Consensus 233 ~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~--~i~v~~~~l 310 (517) ......+... ...|- |-+ +++.|. .++. +..+++-+.+.........+.. ++.| T Consensus 154 ~~~~~~~~~~-~~~~~--~~g-~l~~~~----------~l~~-----~~~~~~~e~~~~~~~~~~~~~n~~~~~v----- 209 (378) T protein:vir:94 154 DNALASIQTK-LEQGK--LRG-LLKINA----------FLDI-----DNTQEYREKALATIKNMQEGSSYNGLTP----- 209 (378) T ss_pred HHHHHHHHHH-HhhCC--ccc-ceeeCC----------cCCH-----HHHHHHHHHHHHHHHHhhccccccccee----- Confidence 0000000000 00000 000 111110 0010 0011111111111111000000 0000 Q ss_pred ccCCCCcccccCccCCcccceeeeecCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHH Q lcl|Aclame:pro 311 RTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATE 390 (517) Q Consensus 311 ~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAte 390 (517) . +++..++.++......+ +..++...++|+...|++|..+. .|++| T Consensus 210 --------------------------l-~~g~~~~~l~~~~~~~~-~~~~~~~~~~Ia~~fgvPp~~l~------g~~~e 255 (378) T protein:vir:94 210 --------------------------V-DNKTEIVELKKDYSVLN-KDEIDLIKSELLTGYFMNENILL------GTATQ 255 (378) T ss_pred --------------------------c-cCCceEEEccCChHHhh-HHHHHHHHHHHHHHhCCCHHHhc------CCchH Confidence 0 12222333333322223 35556667789999999998773 12223 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCCH Q lcl|Aclame:pro 391 IVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPT 470 (517) Q Consensus 391 i~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~ 470 (517) ..+. .-...++.-+...++.+|..-+-.=.+....+ ......++.++++.-...|..+.++....++.+|+|+. T Consensus 256 ~~~~-~f~~~tl~P~~~~ie~~l~~~Ll~~~e~~~g~-----~~~~~~~~~f~~~~l~~~d~~~~~e~~~~~~~~G~~t~ 329 (378) T protein:vir:94 256 EQQI-YFYNSTIIPLLIQLEKELTYKLISTNRRRVVK-----GNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQ 329 (378) T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHhhcCChhHhhhhh-----hhcccceeEeecchhhhcCHHHHHHHHHHHHhCCCcCH Confidence 2111 11112222233333333332110000000100 01112346677788888899999999999999999999 Q ss_pred HHHHHhhCCCCHHH-HHHHHHHHHHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 471 VEAIQRIFKVPKKT-AEQWLEEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 471 ~~~l~~~~~~~eee-a~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) -+++. ..|+..-+ .++-+- ...-...+....++....+..+++| T Consensus 330 NE~R~-~~g~~p~~ggd~~~~--~~n~~~~~~~~~~~~~~~~~~~~~e 374 (378) T protein:vir:94 330 NQLLV-KMGEQPIEGGDVYIA--NLNAVAVKNLSDLQGNRKDVTSTDE 374 (378) T ss_pred HHHHH-HhCCCCCCCCCeeee--cccccchhcchhcccccCCCCCCCC Confidence 99665 44553311 111000 0000011111111111122222222 No 245 >protein:vir:1986 Length: 512 # NCBI annotation: Hypothetical protein # Family: family:all:313 # MgeID: mge:320 # MgeName: Mu # Cross-refs: genbank:acc:NP_050633;genbank:gi:9633520;genbank:GeneID:2636304 Probab=90.54 E-value=0.02 Score=29.86 Aligned_cols=410 Identities=13% Similarity=0.100 Sum_probs=164.5 Q ss_pred CchHH-----HHH--HHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcc---cccccccCccccccc Q lcl|Aclame:pro 1 MKVIQ-----RIK--NFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQ---VEYINSQGKIQERDY 70 (517) Q Consensus 1 m~~~~-----~ik--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~---~~~~~~~~~~~~~~~ 70 (517) |+=|= -|+ ...+.-...+. ..-....+|+--.+.|.-..+|-+- -=.|+... +.+.-. .+- T Consensus 1 m~~~~d~~g~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~gltp~~l~~iL~~--a~~gd~~~~~~L~~dm~------~~D 71 (512) T protein:vir:19 1 MGRILDISGQPFDFDDEMQSRSDELA-MVMKRTQEHPSSGVTPNRAAQMLRD--AERGDLTAQADLAFDME------EKD 71 (512) T ss_pred CcceeCCCCCccccccccccccchhc-ccchhhccccccCCCHHHHHHHHHH--hhCCCHHHHHHHHHHHH------hhC Confidence 22110 000 00000000000 0001222333334444333333221 01111110 000000 000 Q ss_pred cccChHHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhh-hHHHHHHHHHHHHHhhCCEEEEEEEe Q lcl|Aclame:pro 71 MTLNLRKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHN-KFIKNLSDYLEPTFALGGLTVRPYVD 149 (517) Q Consensus 71 ~~ln~~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n-~f~~~~~~~~~~a~~~G~~~~k~~~d 149 (517) . -+...+.. --.-|.+-+-.|.-... .+...+...+++++.+.+- .|...+..++ +|...|-.++-+.|. T Consensus 72 ~--hi~s~l~~-Rk~av~~~~w~I~p~~~-----~~~~~~~~a~~v~~~l~~~~~f~~~~~~ll-dA~~~G~s~~Ei~w~ 142 (512) T protein:vir:19 72 T--HLFSELSK-RRLAIQALEWRIAPARD-----ASAQEKKDADMLNEYLHDAAWFEDALFDAG-DAILKGYSMQEIEWG 142 (512) T ss_pred h--HHHHHHHH-HHHHHhCCCceEecCCC-----CCHHHHHHHHHHHHHHhcCCCHHHHHHHHH-hhhhhcceeeeeEee Confidence 0 11122222 22234444444433211 1222345667888888654 4777766654 688899999888775 Q ss_pred --CCee---EEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCcc Q lcl|Aclame:pro 150 --NGEI---EFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEG 224 (517) Q Consensus 150 --~g~~---~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~ 224 (517) +|.. ++.++++..|.. +. ++. ...+ ++.... T Consensus 143 ~~~g~~~~~~~~~r~~~~f~~---~~-----------------~~~------------------~~lr-----~~~~~~- 178 (512) T protein:vir:19 143 WLGKMRVPVALHHRDPALFCA---NP-----------------DNL------------------NELR-----LRDASY- 178 (512) T ss_pred eeCCceeeeeeeeecccccee---cc-----------------CCC------------------cEEE-----ecCCCC- Confidence 3321 233343332211 00 000 0000 111110 Q ss_pred ccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHH-Hhcccee Q lcl|Aclame:pro 225 EIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEI-KMGQRTV 303 (517) Q Consensus 225 ~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~-~~~~~~i 303 (517) -|.++| +. + |++++ .+...+.|+|.+.+..|--..--=+..+..|+.-+ +.|.|.+ T Consensus 179 -~G~~l~---------~~------k---~i~~~----~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~E~yG~P~~ 235 (512) T protein:vir:19 179 -HGLELQ---------PF------G---WFMHR----AKSRTGYVGTNGLVRTLIWPFIFKNYSVRDFAEFLEIYGLPMR 235 (512) T ss_pred -Cceeec---------CC------c---eEEEe----ccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCee Confidence 022111 10 1 22222 12245788999999888655544445555555555 4566655 Q ss_pred ecchHHhccCCCCcccccCccCCcccceeeee---cCC-----CCCCcceEEecc-cChHHHHHHHHHHHHHHHHHhCCC Q lcl|Aclame:pro 304 FVSDVMLRTVPDESGMPPPQVFDPDVNVYKSI---RMG-----TDEEFVKDVTHD-IRTEQYKEAINQALRTLEMELKLS 374 (517) Q Consensus 304 ~v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~---~~~-----~~~~~v~~~~~d-ir~e~~~~~l~~~l~~i~~~~g~s 374 (517) +. +.+.+..... ...+..++ ..+ ..+..|+.++.. ...+.|.+.++.+=++|+.. -++ T Consensus 236 ig------ky~~~a~~~e------k~~L~~al~~~~~~a~~iiP~~~~ie~~ea~~~~~~~y~~li~~~d~~Isk~-iLG 302 (512) T protein:vir:19 236 VG------KYPTGSTNRE------KATLMQAVMDIGRRAGGIIPMGMTLDFQSAADGQSDPFMAMIGWAEKAISKA-ILG 302 (512) T ss_pred EE------ecCCCCCHHH------HHHHHHHHHHHhhCcEEEecCCceEEEeecCCCCHHHHHHHHHHHHHHHHHH-Hhh Confidence 43 1111111100 01111111 100 122335555533 23334555555554555433 233 Q ss_pred ccccccC-CCccchH-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCC Q lcl|Aclame:pro 375 VGTFSFD-GRSMKTA-TEIVSENDLTYRTRNDHVYEVEQFIK-GLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQD 451 (517) Q Consensus 375 ~~~~~~~-~~~~~TA-tei~a~~~~~~~t~~~~~~~~~~al~-~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d 451 (517) +|++-+ +++...| .++- +.-...-+..-.+.+...|. +|++-++.+ + ++...+...-+.+.|+..-++| T Consensus 303 -qtlTs~~g~~Gs~a~~~vh--~ev~~di~~aDa~~i~~tln~~li~~l~~~----N-~~~~~~~~~~p~~~f~~~e~eD 374 (512) T protein:vir:19 303 -GTLTTEAGDKGARSLGEVH--DEVRREIRNADVGQLARSINRDLIYPLLAL----N-SDSTIDINRLPGIVFDTSEAGD 374 (512) T ss_pred -hhhcccccccchhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----C-CCCCCCccccceEEecCCChhh Confidence 343322 2221112 1221 11223334456677778885 688877653 2 2222222334667787777888 Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHhhCCCCHHHHHHHHHHHHHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 452 RSALLRFYGQAKTFGFIPTVEAIQRIFKVPKKTAEQWLEEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 452 ~~~~~~~~~~~~~~G~~S~~~~l~~~~~~~eeea~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) ..+.++.+.+++ .|+--.+.++.+.+|+.+.+-.+.+......+.++.+..............++ T Consensus 375 l~~~a~~~~~l~-~G~~i~~~~i~e~~Gip~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (512) T protein:vir:19 375 ITALSDAIPKLA-AGMRIPVSWIQEKLHIPQPVGDEAVFTIQPVVPDNGSQKEAALSAEDIPQEDD 439 (512) T ss_pred HHHHHHHHHHHh-cCCCCCHHHHHHHhCCCCCCCccccccCCCccccccccccccccccCCCchhh Confidence 888887777775 68755677899999986532222222111111111111110100111111112 No 246 >protein:vir:7208 Length: 524 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:142 # MgeName: T4 # Cross-refs: genbank:acc:NP_049782;genbank:gi:9632594;genbank:GeneID:1258582 Probab=90.03 E-value=0.023 Score=29.56 Aligned_cols=428 Identities=13% Similarity=0.105 Sum_probs=187.8 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccChHHHHH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLRKLSA 80 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~~~i~ 80 (517) =.=++..-++.-.+.+- ..+.+.. .....+ .....-|++++.++.. |.+. ..|- T Consensus 40 a~e~~~~~~~~a~~~~g-~~~~~~g---~~e~~~-~~~~eLI~~YR~ma~~--pEvd-------------------~Av~ 93 (524) T protein:vir:72 40 AREFEVSSNEAASPYNA-AFQTIFG---SYEPGM-KTTRELIDTYRNLMNN--YEVD-------------------NAVS 93 (524) T ss_pred ceeeeecccccccccce-eeeehhc---cccccc-chHHHHHHHHHHHhhc--cchh-------------------hHHH Confidence 00000000000000000 0011100 000000 1234567788877433 3321 0111 Q ss_pred HHHhhhhc----CCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeCC----- Q lcl|Aclame:pro 81 DVLSGLVF----NEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDNG----- 151 (517) Q Consensus 81 ~~~A~ll~----~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~g----- 151 (517) .-.-+.++ .+++++.+++.... +...++-.+..+.++.--+|.++..+....+.+.|..+||-++|.. T Consensus 94 eIVneaiv~d~~~~pV~l~L~~~~~s---~~iK~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fhKiid~k~pk~G 170 (524) T protein:vir:72 94 EIVSDAIVYEDDTEVVALNLDKSKFS---PKIKNMMLDEFSDVLNHLSFQRKGSDHFRRWYVDSRIFFHKIIDPKRPKEG 170 (524) T ss_pred HhhcceeEecCCCceEEEEecCcCcc---hHHHHHHHHHHHHHHHHhccchhhhHHHhhheeeeEEEEEEEEeCCCcccc Confidence 11111111 22444555443321 2222344566677777778999999999999999999999999853 Q ss_pred eeEEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEE-EEEEeecceeeccceEEEEEEEeecCCccccCccc Q lcl|Aclame:pro 152 EIEFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTL-LEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRI 230 (517) Q Consensus 152 ~~~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~-lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v 230 (517) =..+..++|.++-++.---.. . ..+.++++- .|++.+.. +...|...-..| ..|+.| T Consensus 171 I~Elr~lDPr~i~~vr~i~~~------------~-~~~~~vi~~~~e~f~Y~~---~~~~y~~~g~~~------~~~~~i 228 (524) T protein:vir:72 171 IKELRRLDPRQVQYVREIITE------------T-EAGTKIVKGYKEYFIYDT---AHESYACDGRMY------EAGTKI 228 (524) T ss_pred ceeeeeeCCccceeeeeeccC------------C-Cccchhhcchhhheeecc---CccccccCcccc------CCCcce Confidence 345778888887654211000 0 001111110 01111110 000000000000 011111 Q ss_pred ccccccCCCCcc-eEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHH---Hhccceeec- Q lcl|Aclame:pro 231 PLEELYEGMQEK-TYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEI---KMGQRTVFV- 305 (517) Q Consensus 231 ~l~~~~~~l~~~-~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~---~~~~~~i~v- 305 (517) - ++.. +++.. .+.+... ...-+|-+..|.-.+-.| +..-..+-.+ |.-.+|||- T Consensus 229 k-------I~~dAI~y~h-----SGL~d~~--------~~~i~gyLhkAiKp~NQL-kmlEDAlVIYRitRAPeRRvFYI 287 (524) T protein:vir:72 229 K-------IPKAAVVYAH-----SGLVDCC--------GKNIIGYLHRAVKPANQL-KLLEDAVVIYRITRAPDRRVWYV 287 (524) T ss_pred e-------cchhheeeee-----ccceeCC--------CCceeccchhhhHhHHhh-hHHHhhHHHHhhhccccceEEEE Confidence 1 1111 11100 0011111 011134455454443333 2233333333 455567753 Q ss_pred c---------hHHhcc---------CCCCcccccCccCCcccceeeeecC------CCCCCc--ceEEecccChHHHHHH Q lcl|Aclame:pro 306 S---------DVMLRT---------VPDESGMPPPQVFDPDVNVYKSIRM------GTDEEF--VKDVTHDIRTEQYKEA 359 (517) Q Consensus 306 ~---------~~~l~~---------~~~~~~~~~~~~fd~~~~~y~~~~~------~~~~~~--v~~~~~dir~e~~~~~ 359 (517) + +.+|+. .-+...+. -.+++.++++.- -+++.+ |+++...=. -.-.+- T Consensus 288 DvGnlPk~KAeqYl~~im~k~KNklvYDa~TGe-----v~ddrk~msMlEDyWLpRReGgrgTEItTLpGgqn-lgem~D 361 (524) T protein:vir:72 288 DTGNMPARKAAEHMQHVMNTMKNRVVYDASTGK-----IKNQQHNMSMTEDYWLQRRDGKAVTEVDTLPGADN-TGNMED 361 (524) T ss_pred ecCCCCchhHHHHHHHHHHhcCceeEEeCCCCe-----eccchhhhhhHhhhcccccCCCcccceeeccccCC-cChHHH Confidence 1 111111 00111111 123333444321 133333 444433212 123344 Q ss_pred HHHHHHHHHHHhCCCccccccCCC-c--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCC Q lcl|Aclame:pro 360 INQALRTLEMELKLSVGTFSFDGR-S--MKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPS 436 (517) Q Consensus 360 l~~~l~~i~~~~g~s~~~~~~~~~-~--~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~ 436 (517) ++-+.+.+....+.+.+-+..+++ + ..-++||.-..-....-+.+++..|..-+.++++.=|-|- +.+....+. T Consensus 362 V~YF~kkLy~aLnVP~sRl~~d~~~~f~~gr~~EItRDEikF~KFI~rLR~rFs~~f~~~Lk~qLilK---giit~eew~ 438 (524) T protein:vir:72 362 IRWFRQALYMALRVPLSRIPQDQQGGVMFDSGTSITRDELTFAKFIRELQHKFEEVFLDPLKTNLLLK---GIITEDEWN 438 (524) T ss_pred HHHHHHHHHHHhCCchhhcCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc---cCCCHHHHH Confidence 555666777777887777744432 1 2346777666655666777788888888888877665432 222222222 Q ss_pred c--cceEEEeCCCccCCHHHHHHHHHHHH-----hcC----CCCHHHHHHhhCCCCHHHHHHHHHHHHHhccccCCCCCc Q lcl|Aclame:pro 437 A--EHIGVDFDDGVFQDRSALLRFYGQAK-----TFG----FIPTVEAIQRIFKVPKKTAEQWLEEIRKDQIELDPVTIS 505 (517) Q Consensus 437 ~--~~v~i~f~d~i~~d~~~~~~~~~~~~-----~~G----~~S~~~~l~~~~~~~eeea~~el~~i~~E~~~~~~~~~~ 505 (517) . ..|.++|...---.+..+++.+.+-. ..+ ..|.+...++...+||+|.+++.++|++|..+.--...+ T Consensus 439 ~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~s~~yi~k~ILr~tDeei~~~~k~I~~E~k~~~~~~~~ 518 (524) T protein:vir:72 439 DEINNIKIEFHRDSYFAELKEAEILERRINMLTMAEPFIGKYISHRTAMKDILQMTDEEIEQEAKQIEEESKEARFQDPD 518 (524) T ss_pred HHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHhccCHHHHHHHHHHHHHHhhcCCCCCCc Confidence 2 45777776554444444444333211 112 468888777888999999999999999987542211110 Q ss_pred cccCCCCCCCCC Q lcl|Aclame:pro 506 QRAQKRMFGDEE 517 (517) Q Consensus 506 ~~~~~~~~G~ee 517 (517) + ++| T Consensus 519 ~--------~~~ 522 (524) T protein:vir:72 519 Q--------EQE 522 (524) T ss_pred h--------hhh Confidence 0 111 No 247 >protein:vir:99232 Length: 526 # NCBI annotation: putative portal protein # Family: family:all:313 # MgeID: mge:1649 # MgeName: DMS3 # Cross-refs: genbank:acc:YP_950451;genbank:gi:119953652;genbank:GeneID:4643092 Probab=89.73 E-value=0.025 Score=29.40 Aligned_cols=404 Identities=12% Similarity=0.059 Sum_probs=162.9 Q ss_pred CchHH-----HHHH-HHHHH-HHHhhcccchhhhccccCcCCHHHHHHHHH-------------HHHHhcCCCccccccc Q lcl|Aclame:pro 1 MKVIQ-----RIKN-FFKRG-GYALSGQTLKSINDHEKINIDPNELARIER-------------NLRQYEGDYPQVEYIN 60 (517) Q Consensus 1 m~~~~-----~ik~-~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~-------------~~~~Y~g~~~~~~~~~ 60 (517) |+-|= -|+. .+++- ...+. ..-.....|+--.+.|.-...|-+ +..|.+-+. T Consensus 1 ~~~~~d~~g~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~gltp~~l~~iLr~a~~gd~~~~~~L~e~m~e~D~------- 72 (526) T protein:vir:99 1 MAQIVDVYGNPIRTQQLREPQTSRLA-GLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDA------- 72 (526) T ss_pred CCeeECCCCCccccccccchhhhhhh-hhhhhhcccCcCCCCHHHHHHHHHhhhCCCHHHHHHHHHHHHhhCh------- Confidence 22110 1110 00000 00000 000111223322333332222222 222221110 Q ss_pred ccCccccccccccChHHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhh-hHHHHHHHHHHHHHhh Q lcl|Aclame:pro 61 SQGKIQERDYMTLNLRKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHN-KFIKNLSDYLEPTFAL 139 (517) Q Consensus 61 ~~~~~~~~~~~~ln~~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n-~f~~~~~~~~~~a~~~ 139 (517) -+...+.. --.-|.+-+-.|.-.... +...+...+++++.+.+- .|...+.+++ +|... T Consensus 73 -------------~i~s~l~~-Rk~av~~~~w~I~p~~~~-----~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~ 132 (526) T protein:vir:99 73 -------------HLFAEMSK-RKRAILGLDWAVEPPRNA-----SAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGH 132 (526) T ss_pred -------------HHHHHHHH-HHHHHhCCCceEecCCCC-----CHHHHHHHHHHHHHHhcccCHHHHHHHHH-Hhhhh Confidence 11111211 112244444444332111 122345667888888763 4777776665 68889 Q ss_pred CCEEEEEEEeC--Cee---EEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEE Q lcl|Aclame:pro 140 GGLTVRPYVDN--GEI---EFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVIT 214 (517) Q Consensus 140 G~~~~k~~~d~--g~~---~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~ 214 (517) |-.++-+.|+. |.. .+.++++..|.. + .++. ..++ T Consensus 133 G~s~~Eivw~~~~g~~~~~~l~~r~~~~f~~---~-----------------~~~~------------------~~l~-- 172 (526) T protein:vir:99 133 GYSCIELEWALQGREWMPLAFHHRPQSWFQL---N-----------------PEDQ------------------NELR-- 172 (526) T ss_pred cceeEEEEEeecCCceeEEEeeeecccceee---c-----------------cCCC------------------cEEE-- Confidence 99999888863 221 122222221110 0 0000 0000 Q ss_pred EEEeecCCccccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 215 NELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWW 294 (517) Q Consensus 215 n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~ 294 (517) ++.+.. -|.++| + .+ |++++ .+....+|+|.|.+..|.-..--=...+..|+. T Consensus 173 ---~~~~~~--~g~~l~---------~------~k---~i~~~----~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~ 225 (526) T protein:vir:99 173 ---LRDNSP--AGEALQ---------P------FG---WIIHR----PRARSGYVARSGLFRVLAWPYLFRHYATSDLAE 225 (526) T ss_pred ---ecCCCC--Cceeec---------C------CC---eEEEe----ecCCcCCccccchHHHHHHHHHHHHhhHHHHHH Confidence 111111 122111 1 01 22222 223457889999998886544333334555554 Q ss_pred HH-HhccceeecchHHhccCCCCcccccCccCCcccceeeeecCC-----CCCCcceEEecc-cChHHHHHHHHHHHHHH Q lcl|Aclame:pro 295 EI-KMGQRTVFVSDVMLRTVPDESGMPPPQVFDPDVNVYKSIRMG-----TDEEFVKDVTHD-IRTEQYKEAINQALRTL 367 (517) Q Consensus 295 e~-~~~~~~i~v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~~~-----~~~~~v~~~~~d-ir~e~~~~~l~~~l~~i 367 (517) -+ +.|.|.++.. .+.+....... .-.+....+..+ ..+..|+.++.. ...+.|.+.++.+=++| T Consensus 226 f~E~yG~P~~igk------y~~~a~~~ek~---~L~~av~~i~~d~~~iiP~~~~ie~~ea~~~~~~~f~~li~~~d~~I 296 (526) T protein:vir:99 226 MLEIYGLPIRLGK------YPPGTADEEKA---TLLRAVTGLGHAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAI 296 (526) T ss_pred HHHHcCCceEEEe------cCCCCCHHHHH---HHHHHHHHHhhCcEEEecCCceeEEeecCCCCHHHHHHHHHHHHHHH Confidence 44 4566655541 12221111000 000011111111 122335555533 23445666666555555 Q ss_pred HHHhCCCccccccC-CCc-cch-H-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhccCCCCCCccceEE Q lcl|Aclame:pro 368 EMELKLSVGTFSFD-GRS-MKT-A-TEIVSENDLTYRTRNDHVYEVEQFIK-GLVISVLELAKTYKLFGGEIPSAEHIGV 442 (517) Q Consensus 368 ~~~~g~s~~~~~~~-~~~-~~T-A-tei~a~~~~~~~t~~~~~~~~~~al~-~li~~il~~~~~~~~~~~~~~~~~~v~i 442 (517) + ++-++ +|++-+ ++| ..| | .++- +.-...-+..-.+.+...|. +|++.++.+ + +++..+...-+.+ T Consensus 297 s-k~iLG-qtlTs~~~~g~~gS~a~g~vh--~~v~~di~~aDa~~i~~tln~~Li~~l~~~----N-~~~~~~~~~~p~~ 367 (526) T protein:vir:99 297 S-KAVLG-GTLTSTTSQSGGGAFALGQVH--NEVRHDLLASDARQLAATLSRDLLWPLLVL----N-RPGSPDVRRAPRL 367 (526) T ss_pred H-HHHhh-hhhccccccCcchhhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----C-CCCcCCccccceE Confidence 3 33354 444322 111 111 1 1121 11122233445667777775 588877754 2 2222222334667 Q ss_pred EeCCCccCCHHHHHHHHHHHHhcCCCCHHHHHHhhCCCCHHHHHHHHHHHHHhcccc-CCCCCcc-----ccCCCCCCCC Q lcl|Aclame:pro 443 DFDDGVFQDRSALLRFYGQAKTFGFIPTVEAIQRIFKVPKKTAEQWLEEIRKDQIEL-DPVTISQ-----RAQKRMFGDE 516 (517) Q Consensus 443 ~f~d~i~~d~~~~~~~~~~~~~~G~~S~~~~l~~~~~~~eeea~~el~~i~~E~~~~-~~~~~~~-----~~~~~~~G~e 516 (517) .|+..-.+|..+.++.+.+++..|+--...++.+.+|+.+.+-.+.+-.-....... .+..... ...+.....+ T Consensus 368 ~~~~~e~eDl~~~a~~~~~L~~~G~~i~~~~i~e~~Gip~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (526) T protein:vir:99 368 VFDLREQADITSMAQSIPALVNVGLEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQ 447 (526) T ss_pred EeCCCCcccHHHHHHHHHHHHhCCCccCHHHHHHHhCCCCCCCcccccCCCCCCcccccccccccccccccccccCcchh Confidence 788878888888999999999999844456788888986543222221100000000 0000000 0000000111 Q ss_pred C Q lcl|Aclame:pro 517 E 517 (517) Q Consensus 517 e 517 (517) + T Consensus 448 ~ 448 (526) T protein:vir:99 448 A 448 (526) T ss_pred h Confidence 1 No 248 >protein:vir:103458 Length: 524 # NCBI annotation: portal vertex of the head # Family: family:all:1036 # MgeID: mge:1542 # MgeName: RB32 # Cross-refs: genbank:acc:YP_803110;genbank:gi:116326390;genbank:GeneID:4405487 Probab=89.55 E-value=0.026 Score=29.30 Aligned_cols=428 Identities=13% Similarity=0.102 Sum_probs=187.9 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccChHHHHH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLRKLSA 80 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~~~i~ 80 (517) =.=++..-++.-.+.+- ..+.+..- ....+ .....-|++++.++.. |.+. ..|- T Consensus 40 a~e~~~~~~~~a~~~~g-~~~~~~g~---~e~~~-~~~~eLI~~YR~ma~~--pEvd-------------------~Av~ 93 (524) T protein:vir:10 40 AREFEVSSNEAASPYNA-AFQTIFGS---YEPGM-KTTRELIDTYRNLMNN--YEVD-------------------NAVS 93 (524) T ss_pred ceeeeecccccccccce-eeeehhcc---ccccc-chHHHHHHHHHHHhhc--cchh-------------------hHHH Confidence 00000000000000000 00111000 00000 1234567788877433 3321 0111 Q ss_pred HHHhhhhc----CCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeCC----- Q lcl|Aclame:pro 81 DVLSGLVF----NEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDNG----- 151 (517) Q Consensus 81 ~~~A~ll~----~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~g----- 151 (517) .-.-+.++ .+++++.+++.... +...++-.+..+.++.--+|.++..+....+.+.|..+||-++|.. T Consensus 94 eIVneaiv~d~~~~pV~l~L~~~~~s---~~iK~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fhKiid~k~pk~G 170 (524) T protein:vir:10 94 EIVSDAIVYEDDTEVVALNLDKSKFS---PKIKNMMLDEFNDVLNHLSFQRKGSDHFRRWYVDSRIFFHKIIDPKRPKEG 170 (524) T ss_pred HhhcceeEecCCCceEEEEecCcCcc---hHHHHHHHHHHHHHHHHhccchhhhHHHhhheeeeEEEEEEEeeCCCcccc Confidence 11111111 22444555443321 2222344566677777778999999999999999999999999853 Q ss_pred eeEEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEE-EEEEeecceeeccceEEEEEEEeecCCccccCccc Q lcl|Aclame:pro 152 EIEFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTL-LEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRI 230 (517) Q Consensus 152 ~~~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~-lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v 230 (517) =..+..++|.++-++.---.. . ..+.++++- .|++.+.. +...|...-..| ..|+.| T Consensus 171 I~Elr~lDPr~i~~vr~i~~~------------~-~~~~~vi~~~~e~f~Y~~---~~~~y~~~g~~~------~~~~~i 228 (524) T protein:vir:10 171 IKELRRLDPRQVQYVREIITE------------T-EAGTKIVKGYKEYFIYDT---AHESYACDGRMY------EAGTKI 228 (524) T ss_pred ceeeeeeCCccceeeeeeccC------------C-Cccchhhcchhhheeecc---CccccccCcccc------CCCcce Confidence 345778888887654211000 0 001111110 01111110 000000000000 011111 Q ss_pred ccccccCCCCcc-eEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHH---Hhccceeec- Q lcl|Aclame:pro 231 PLEELYEGMQEK-TYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEI---KMGQRTVFV- 305 (517) Q Consensus 231 ~l~~~~~~l~~~-~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~---~~~~~~i~v- 305 (517) - ++.. +++.. .+.+... ...-+|-+..|.-.+-.| +..-..+-.+ |.-.+|||- T Consensus 229 k-------I~~dAI~y~h-----SGL~d~~--------~~~i~gyLhkAiKp~NQL-kmlEDAlVIYRitRAPeRRvFYI 287 (524) T protein:vir:10 229 K-------IPKAAIVYAH-----SGLVDCC--------GKNIIGYLHRAVKPANQL-KLLEDAVVIYRITRAPDRRVWYV 287 (524) T ss_pred e-------cchhheeeee-----ccceeCC--------CCceeccchhhhHHHHhh-hHHHhhHHHHhhhccccceEEEE Confidence 1 1111 11100 0011111 011134455454443333 2233333333 455567753 Q ss_pred c---------hHHhcc---------CCCCcccccCccCCcccceeeeecC------CCCCCc--ceEEecccChHHHHHH Q lcl|Aclame:pro 306 S---------DVMLRT---------VPDESGMPPPQVFDPDVNVYKSIRM------GTDEEF--VKDVTHDIRTEQYKEA 359 (517) Q Consensus 306 ~---------~~~l~~---------~~~~~~~~~~~~fd~~~~~y~~~~~------~~~~~~--v~~~~~dir~e~~~~~ 359 (517) + +.+|+. .-+...+. -.+++.++++.- -+++.+ |+++...=.. .-.+- T Consensus 288 DvGnlPk~KAeqYl~~im~k~KNklvYDa~TGe-----v~ddrk~msMlEDyWLpRReGgrgTEItTLpGgqnl-gem~D 361 (524) T protein:vir:10 288 DTGNMPARKAAEHMQHVMNTMKNRVVYDASTGK-----IKNQQHNMSMTEDYWLQRRDGKAVTEVDTLPGADNT-GNMED 361 (524) T ss_pred ecCCCCchhHHHHHHHHHHhcCceeEEeCCCCe-----eccchhhhhhHhhhcccccCCCcccceeeccccCCc-ChHHH Confidence 1 111111 00111111 123333444321 133333 4444332121 23344 Q ss_pred HHHHHHHHHHHhCCCccccccCCC-c--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCC Q lcl|Aclame:pro 360 INQALRTLEMELKLSVGTFSFDGR-S--MKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPS 436 (517) Q Consensus 360 l~~~l~~i~~~~g~s~~~~~~~~~-~--~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~ 436 (517) ++-+.+.+....+.+.+-+..+++ + ..-++||.-..-....-+.+++..|..-+.++++.=|-|- +.+....+. T Consensus 362 V~YF~kkLy~aLnVP~sRl~~d~~~~f~~gr~~EItRDEikF~KFI~rLR~rFs~~f~~~Lk~qLilK---giit~eew~ 438 (524) T protein:vir:10 362 VRWFRQALYMALRVPLSRIPQDQQGGVMFDSGTSITRDELTFAKFIRELQHKFEEVFLDPLKTNLLLK---GIITEDEWN 438 (524) T ss_pred HHHHHHHHHHHhCCchhhcCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc---cCCCHHHHH Confidence 555666777777887777744432 1 2346777666655666777788888888888877665432 222222222 Q ss_pred c--cceEEEeCCCccCCHHHHHHHHHHHH-----hcC----CCCHHHHHHhhCCCCHHHHHHHHHHHHHhccccCCCCCc Q lcl|Aclame:pro 437 A--EHIGVDFDDGVFQDRSALLRFYGQAK-----TFG----FIPTVEAIQRIFKVPKKTAEQWLEEIRKDQIELDPVTIS 505 (517) Q Consensus 437 ~--~~v~i~f~d~i~~d~~~~~~~~~~~~-----~~G----~~S~~~~l~~~~~~~eeea~~el~~i~~E~~~~~~~~~~ 505 (517) . ..|.++|...---.+..+++.+.+-. ..+ ..|.+...++...+||+|.+++.++|++|..+.--...+ T Consensus 439 ~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~s~~yi~k~ILr~tDeei~~~~k~I~~E~k~~~~~~~~ 518 (524) T protein:vir:10 439 DEINNIKIEFHRDSYFTELKEAEILERRINMLTMAEPFIGKYISHRTAMKDILQMTDEEIEQEAKQIEEESKEARFQDPD 518 (524) T ss_pred HHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHhccCHHHHHHHHHHHHHHhhcCCCCCCc Confidence 2 45777776554444444444333211 112 468888777888999999999999999987542211110 Q ss_pred cccCCCCCCCCC Q lcl|Aclame:pro 506 QRAQKRMFGDEE 517 (517) Q Consensus 506 ~~~~~~~~G~ee 517 (517) -++| T Consensus 519 --------~~~~ 522 (524) T protein:vir:10 519 --------QEQE 522 (524) T ss_pred --------hhhh Confidence 0111 No 249 >protein:vir:79063 Length: 491 # NCBI annotation: gp3 # Family: family:all:313 # MgeID: mge:1862 # MgeName: phiE255 # Cross-refs: genbank:acc:YP_001111203;genbank:gi:134288841;genbank:GeneID:4960737 Probab=88.25 E-value=0.033 Score=28.67 Aligned_cols=398 Identities=12% Similarity=0.081 Sum_probs=157.9 Q ss_pred CchHHHHHHHHHHHHHH-hhcccc----hhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccCh Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYA-LSGQTL----KSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNL 75 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~-~~~~~~----~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~ 75 (517) =+|+.--.++++..... -.+..+ ..+..|.--.+.+.- ..|.+-+ .|.. .+ |. +-. .-.-+ T Consensus 3 ~~i~~~~g~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~p~~-~~il~~~---~~~~-~~-y~----~m~----~D~~i 68 (491) T protein:vir:79 3 KGLWVSPTEFVKFGEPDKSLSSQIATRARSIDFFALGMYLPNP-DPVLKAL---GKDI-RV-YR----ELR----ADAHV 68 (491) T ss_pred CeeeCCCCCcccccccchhHHHHHhhhccccccccccccCcch-hHHHhhc---cCCH-HH-HH----HHh----hChHH Confidence 12222222233211100 000000 000011100000100 0010000 0000 00 00 000 00011 Q ss_pred HHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeC--Cee Q lcl|Aclame:pro 76 RKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDN--GEI 153 (517) Q Consensus 76 ~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~--g~~ 153 (517) ...+. +.-.-|.+.+-.|...+.+ +...+++.+.++.-.|...+.+++ +|...|-.++-..|+. |.. T Consensus 69 ~s~l~-~Rk~av~~~~w~i~~~~~~---------~~~a~~i~e~l~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~ 137 (491) T protein:vir:79 69 GGCVR-RRKAAVKALEWGLDRGKAK---------SRVAKSIADVFADLDLSRIATEML-DAVLYGYQPMEITWGKVGNYI 137 (491) T ss_pred HHHHH-HHHHHHhCCCcEEecCCCC---------HHHHHHHHHHHhcCCHHHHHHHHH-HhhhhcceeEEEEEeecCCee Confidence 11121 1222344544444332211 234578888888778887777664 6888999999888863 332 Q ss_pred ---EEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCccc Q lcl|Aclame:pro 154 ---EFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRI 230 (517) Q Consensus 154 ---~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v 230 (517) ++.++++..|.. +.. +. .+ ++..+...-|.++ T Consensus 138 ~~~~l~~r~~~~f~~---d~~-----------------~~--------------------l~-----l~~~~~~~~g~~l 172 (491) T protein:vir:79 138 VPIDVVGKPADWFVY---DPE-----------------NQ--------------------LR-----FRSKEHWVQGEEL 172 (491) T ss_pred eEEeeeeecccceee---ccC-----------------Cc--------------------eE-----EeecCCCCCceee Confidence 244444443321 100 00 00 0100000002211 Q ss_pred ccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHH-HhccceeecchHH Q lcl|Aclame:pro 231 PLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEI-KMGQRTVFVSDVM 309 (517) Q Consensus 231 ~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~-~~~~~~i~v~~~~ 309 (517) | +. . |++++ .+....+|+|.|.+..|--..--=+..+..|+.-+ +.|-|..++ T Consensus 173 p---------~~------k---~i~~~----~~~~~g~p~g~gLl~~~~w~~~fK~~~~~~w~~f~E~~G~P~~ig---- 226 (491) T protein:vir:79 173 P---------AR------K---FLVPR----QEATYLNPYGFPDLSMCFWPTTFKKGGLKFWVQFTEKYGSPMLVG---- 226 (491) T ss_pred c---------CC------C---eEEEE----ecCCCCCcccchhHHHHHHHHHHHHhhHHHHHHHHHHcCCCeEEE---- Confidence 1 11 1 33332 12234679999999988765444444555555555 456664443 Q ss_pred hccCCCCcccccCccCCcccceeeeecCC-----CCCCcceEEeccc---ChHHHHHHHHHHHHHHHHHhCCCccccccC Q lcl|Aclame:pro 310 LRTVPDESGMPPPQVFDPDVNVYKSIRMG-----TDEEFVKDVTHDI---RTEQYKEAINQALRTLEMELKLSVGTFSFD 381 (517) Q Consensus 310 l~~~~~~~~~~~~~~fd~~~~~y~~~~~~-----~~~~~v~~~~~di---r~e~~~~~l~~~l~~i~~~~g~s~~~~~~~ 381 (517) +.+.+......... .+....+..+ ..+..++.++... ..+.|.+.++.+=++|+. +-++ +|++-+ T Consensus 227 --ky~~~a~~~ek~~l---~~al~~~~~~a~~viP~~~~ie~~ea~~~~g~~~~y~~li~~~d~~Isk-~iLG-qtlTt~ 299 (491) T protein:vir:79 227 --KHPRSASDAETNLL---LDRLEDMVQDAVAVIPDDSSIEIKEAAGKSGSADVYERLLHFCRGEVSI-ALLG-QNQTTE 299 (491) T ss_pred --ecCCCCCHHHHHHH---HHHHHHHhcCeEEEecCCceeEEEeccCCCCChhHHHHHHHHHHHHHHH-HHhh-hhhccC Confidence 11211111000000 0001111111 1233466665442 223465555544444433 2233 333333 Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHH Q lcl|Aclame:pro 382 GRSMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQ 461 (517) Q Consensus 382 ~~~~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~ 461 (517) ++|...+.++-.. -...-+..-.+.+...|.+|++-++.+ ++ + +...+.+.|.+.- .+.+..++.+.+ T Consensus 300 ~~gs~a~~~vh~~--v~~~i~~~D~~~i~~tln~li~~l~~~----N~--~---~~~~p~f~~~e~e-e~~~~~a~~~~~ 367 (491) T protein:vir:79 300 ATSTRASAQAGLE--VTDDIRDGDKAIVVEAMNMLIRWICDL----NF--D---GAARPVFDMWEQE-QVDEIQAGRDEK 367 (491) T ss_pred cccchhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHh----cC--C---CCCcceEeecCcC-chhHHHHHHHHH Confidence 3322212222111 122333445777778888888876643 21 1 1123456676532 222456777889 Q ss_pred HHhcCCCCHHHHHHhhCCCCHHHHHHHHHHHHHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 462 AKTFGFIPTVEAIQRIFKVPKKTAEQWLEEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 462 ~~~~G~~S~~~~l~~~~~~~eeea~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) ++..|+--.+.++.+.+|+.+.+..+.+......+ .............+.++ T Consensus 368 L~~~G~~i~~~~~~e~~Gip~~~~~e~~~~~~~~~----~~~~~~~~~~~~~~~~~ 419 (491) T protein:vir:79 368 LTRAGARFTPAYFKRAYNLQDGDLDERPLPVSAVD----AVGAASFAEFEAPDQDA 419 (491) T ss_pred HHhCCCccCHHHHHHHhCCCCCCCCccccCcCccc----ccccccccccCCCCCcc Confidence 99999855667888999987643322221111111 11111111111222222 No 250 >protein:vir:103860 Length: 528 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1522 # MgeName: D3112 # Cross-refs: genbank:acc:NP_938234;genbank:gi:38229139;genbank:GeneID:2648175 Probab=87.78 E-value=0.036 Score=28.47 Aligned_cols=406 Identities=11% Similarity=0.053 Sum_probs=162.1 Q ss_pred CchHHHHHHHHHHHHHHhhc--ccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcc-ccc--------ccccCcccccc Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSG--QTLKSINDHEKINIDPNELARIERNLRQYEGDYPQ-VEY--------INSQGKIQERD 69 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~-~~~--------~~~~~~~~~~~ 69 (517) |+-| +.. ++++. . .+...-..++..=++-|.+.+.. ++. .+..|+..... T Consensus 1 ~~~~-------------~d~~g~p~~~----~--~~~~~~~~~~~~~~~~~~~~~~~gltp~~l~~il~~a~~gd~~~~~ 61 (528) T protein:vir:10 1 MAAI-------------VDIYGNPLRT----Q--QLRKQQTAHLAGLAKEFANHPAKGLTPAKLAHILIEAEQGHLQAQA 61 (528) T ss_pred CCee-------------ECCCCCcccc----c--cccchhhhhhhhhhhhhcccCCCCCCHHHHHHHHHhhhCCCHHHHH Confidence 2211 110 11110 0 00001111122111222222211 110 00011100000 Q ss_pred c-------cccChHHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhh-hHHHHHHHHHHHHHhhCC Q lcl|Aclame:pro 70 Y-------MTLNLRKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHN-KFIKNLSDYLEPTFALGG 141 (517) Q Consensus 70 ~-------~~ln~~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n-~f~~~~~~~~~~a~~~G~ 141 (517) . .-.-+...+ .+--.-|.+-+-.|.-.+.. +...+...+++++.+.+- .|...+.. +-+|...|- T Consensus 62 ~L~~~m~e~D~~i~s~l-~~Rk~av~~~~w~I~p~~~~-----~~~~~~~a~~v~~~l~~~~~f~~~i~~-~lda~~~G~ 134 (528) T protein:vir:10 62 ELFMDMEERDAHLFAEM-SKRKRAVLGLDWTIEPPRNA-----SAAEKADAEYLHELLLDLEGIEDLMLD-CMDGVGHGY 134 (528) T ss_pred HHHHHHHhhChHHHHHH-HHHHHHHhcCCceEecCCCC-----CHHHHHHHHHHHHHHhCCccHHHHHHH-HHhhhhhcc Confidence 0 000111111 22223344444444332111 122345668888888663 46665554 456888999 Q ss_pred EEEEEEEeC--Cee---EEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEE Q lcl|Aclame:pro 142 LTVRPYVDN--GEI---EFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNE 216 (517) Q Consensus 142 ~~~k~~~d~--g~~---~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ 216 (517) .++-+.|.. |.. .+.++++..|.. + ..+. + .+++ T Consensus 135 s~~Ei~w~~~~g~~~~~~~~~r~~~~f~~---~-----------------~~~~-----~-------------~l~~--- 173 (528) T protein:vir:10 135 SAIELDWSLQGREWLPQAFDHRPQSWFQL---N-----------------PDDQ-----D-------------ELRL--- 173 (528) T ss_pred eeEEEEEeecCCceeEEEeeeecccceee---c-----------------cCCC-----c-------------EEec--- Confidence 998887753 221 122222221110 0 0000 0 0010 Q ss_pred EeecCCccccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 217 LYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEI 296 (517) Q Consensus 217 ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~ 296 (517) +. ...-|.++| + .+ |++++ .+.....|+|.+.+..|.-..--=...+..|+.-+ T Consensus 174 --~~--~~~~g~~l~---------~------~k---~iv~~----~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~ 227 (528) T protein:vir:10 174 --RD--NSIAGEVLQ---------P------FG---WIMHK----PRSRSGYVARSGLFRVLAWPYLFKHYSTADLAEML 227 (528) T ss_pred --cC--CCCCceeec---------C------CC---eEEEe----ecCCCCCccccchHHHHHHHHHHHHhhHHHHHHHH Confidence 11 100122221 1 01 22222 12234778899999888755544444555555555 Q ss_pred -HhccceeecchHHhccCCCCcccccCccCCcccceeeeecCC-----CCCCcceEEecc-cChHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 297 -KMGQRTVFVSDVMLRTVPDESGMPPPQVFDPDVNVYKSIRMG-----TDEEFVKDVTHD-IRTEQYKEAINQALRTLEM 369 (517) Q Consensus 297 -~~~~~~i~v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~~~-----~~~~~v~~~~~d-ir~e~~~~~l~~~l~~i~~ 369 (517) +.|-|.++. +.+.+......... .+....+..+ ..+..|+.++.. ...+.|.+.++.+=++|+. T Consensus 228 E~yG~P~~ig------ky~~~a~~~ek~~L---~~al~~i~~~~~~iiP~~~~ie~~ea~~~~~~~f~~li~~~d~~Isk 298 (528) T protein:vir:10 228 EIYGLPIRLG------KYPPGTPDEEKVTL---LRAVTGLGHAAAGIIPESMSIDFQEASKGSAEPFMAMMRWCDDSMSK 298 (528) T ss_pred HHcCCCeEEE------ecCCCCCHHHHHHH---HHHHHHHhhCcEEEecCCceeEEeecCCCChhHHHHHHHHHHHHHHH Confidence 456665554 11211111000000 0001111100 122345555543 3344566666655555544 Q ss_pred HhCCCccccccC-CC---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhccCCCCCCccceEEEe Q lcl|Aclame:pro 370 ELKLSVGTFSFD-GR---SMKTATEIVSENDLTYRTRNDHVYEVEQFIK-GLVISVLELAKTYKLFGGEIPSAEHIGVDF 444 (517) Q Consensus 370 ~~g~s~~~~~~~-~~---~~~TAtei~a~~~~~~~t~~~~~~~~~~al~-~li~~il~~~~~~~~~~~~~~~~~~v~i~f 444 (517) .+ ++ +|++-+ ++ |...+-++- +.-....+..-.+.+...|. +|++.++.+ + +++..+...-+.+.| T Consensus 299 ~i-LG-qtlTs~~~~g~~gS~Alg~vh--~~v~~di~~aDa~~i~~tln~~li~~l~~~----N-~~~~~~~~~~p~~~~ 369 (528) T protein:vir:10 299 AI-LG-GTLTSQTSESGGGAYALGQVH--NEVRHDLLAADARQLAATLSRDLLWPLLVL----N-RSGNLDARRAPRLVF 369 (528) T ss_pred HH-hh-hhhhccccccccchhhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----C-CCCCCCccccceEEe Confidence 33 44 444322 21 111111221 11122334445667777785 588877654 2 233323333467778 Q ss_pred CCCccCCHHHHHHHHHHHHhcCCCCHHHHHHhhCCCCHHHHHHHHHHHH--HhccccCCCCC-c--cccCCCCC---CCC Q lcl|Aclame:pro 445 DDGVFQDRSALLRFYGQAKTFGFIPTVEAIQRIFKVPKKTAEQWLEEIR--KDQIELDPVTI-S--QRAQKRMF---GDE 516 (517) Q Consensus 445 ~d~i~~d~~~~~~~~~~~~~~G~~S~~~~l~~~~~~~eeea~~el~~i~--~E~~~~~~~~~-~--~~~~~~~~---G~e 516 (517) +..-.+|..+.++.+.+++..|+--.+.++.+.+|+...+-.+++..-. ...+...+.+. . ..+..... +.+ T Consensus 370 ~~~e~eDl~~~a~~~~~L~~~G~~i~~~~i~e~~gip~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (528) T protein:vir:10 370 DLKDRADLAAMATSLPPLVKLGVQVPVNWVQEQLGIPLPANGEAVLGDQAGAGIAQLSRRPGPRIAALAQVIGPRYRDQE 449 (528) T ss_pred cCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCCCcccccCCCcccccccCcccccccccccccccccccccc Confidence 8888889888899999999999844556788999986543222221111 00000000000 0 00111111 111 Q ss_pred C Q lcl|Aclame:pro 517 E 517 (517) Q Consensus 517 e 517 (517) + T Consensus 450 ~ 450 (528) T protein:vir:10 450 A 450 (528) T ss_pred h Confidence 1 No 251 >protein:vir:79233 Length: 526 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1867 # MgeName: Phage MP22 # Cross-refs: genbank:acc:YP_001469155;genbank:gi:157834998;genbank:GeneID:5648814 Probab=86.66 E-value=0.044 Score=28.02 Aligned_cols=411 Identities=12% Similarity=0.080 Sum_probs=162.4 Q ss_pred CchH-HH----HH-HHHHHHH-HHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCcccccccccc Q lcl|Aclame:pro 1 MKVI-QR----IK-NFFKRGG-YALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTL 73 (517) Q Consensus 1 m~~~-~~----ik-~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~l 73 (517) |.-| +. |+ ..+++-. ..+. .--..+..|+-=.+.|.-..+|-+- -=.|+......... +- ..+-. T Consensus 1 ~~~~~d~~g~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~gltp~~l~~il~~--a~~gd~~~~~~L~e--dm-~e~D~-- 72 (526) T protein:vir:79 1 MAQIVDVYGNPIRPQQLREPQTSRLA-GLAKEFAQHPAKGLTPAKLARILVE--AEQGNLQAQAELFM--DM-EERDA-- 72 (526) T ss_pred CCeeeCCCCCccCccccchhhhhhhh-hhhhhcccCCCCCcCHHHHHHHHHH--hhCCCHHHHHHHHH--HH-HhhCh-- Confidence 2111 00 00 0001000 0000 0001122233323344333333221 11121111000000 00 00000 Q ss_pred ChHHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhh-hHHHHHHHHHHHHHhhCCEEEEEEEeC-- Q lcl|Aclame:pro 74 NLRKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHN-KFIKNLSDYLEPTFALGGLTVRPYVDN-- 150 (517) Q Consensus 74 n~~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n-~f~~~~~~~~~~a~~~G~~~~k~~~d~-- 150 (517) -+...+.. --.-|.+-+-.|.-.... +.......+++++.+.+- .|...+.+++ +|...|-.++-+.|+. T Consensus 73 ~i~s~l~~-Rk~av~~~~w~I~p~~~~-----~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-dA~~~G~s~~Ei~w~~~~ 145 (526) T protein:vir:79 73 HLFAEMSK-RKRAILGLDWAVEPPRNA-----SAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQG 145 (526) T ss_pred HHHHHHHH-HHHHHhCCCceEecCCCC-----ChHHHHHHHHHHHHHhcccCHHHHHHHHH-hhhhhcceeEEEEEeecC Confidence 11111111 122244444444332111 122345667888888663 4776666554 4888999999888763 Q ss_pred Cee---EEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccC Q lcl|Aclame:pro 151 GEI---EFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIG 227 (517) Q Consensus 151 g~~---~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG 227 (517) |.. .+.++++..|.. + ..+. ..++ ++... .-| T Consensus 146 g~~~~~~l~~r~~~~F~~---~-----------------~~~~------------------~~l~-----~~~~~--~~g 180 (526) T protein:vir:79 146 REWMPLAFHHRPQSWFQL---N-----------------PEDQ------------------NELR-----LRDNS--PAG 180 (526) T ss_pred CceeEEEeeeecccceEe---c-----------------cCCC------------------cEEE-----ecCCC--CCc Confidence 221 122222221110 0 0000 0000 11111 112 Q ss_pred cccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHH-Hhccceeecc Q lcl|Aclame:pro 228 KRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEI-KMGQRTVFVS 306 (517) Q Consensus 228 ~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~-~~~~~~i~v~ 306 (517) .++| +. + |++++ .+.....|+|.+.+..|.-..--=...+..|+.-+ +.|-|..++ T Consensus 181 ~~l~---------~~------k---~iv~~----~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~F~E~yG~P~~ig- 237 (526) T protein:vir:79 181 EALQ---------PF------G---WIIHR----PRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLG- 237 (526) T ss_pred eeec---------CC------c---eEEEe----ecCCcCCccccchHHHHHHHHHHHHhhHHHHHHHHHHcCCceEEE- Confidence 2111 10 1 22222 22345788999999888644333333444444444 456665544 Q ss_pred hHHhccCCCCcccccCccCCcccceeeee---cCC-----CCCCcceEEecc-cChHHHHHHHHHHHHHHHHHhCCCccc Q lcl|Aclame:pro 307 DVMLRTVPDESGMPPPQVFDPDVNVYKSI---RMG-----TDEEFVKDVTHD-IRTEQYKEAINQALRTLEMELKLSVGT 377 (517) Q Consensus 307 ~~~l~~~~~~~~~~~~~~fd~~~~~y~~~---~~~-----~~~~~v~~~~~d-ir~e~~~~~l~~~l~~i~~~~g~s~~~ 377 (517) +.+.+..... ...+..++ ..+ ..+..|+.++.. ...+.|.+.++.+=++|+ ++-++ +| T Consensus 238 -----ky~~~a~~~e------k~~L~~av~~i~~da~~iiP~~~~ie~~ea~~~~~~~f~~li~~~d~~Is-k~iLG-qt 304 (526) T protein:vir:79 238 -----KYPPGTADEE------KATLLRAVTGLGHAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAIS-KAVLG-GT 304 (526) T ss_pred -----ecCCCCCHHH------HHHHHHHHHHHhcCcEEEecCCceeEEeecCCCCHHHHHHHHHHHHHHHH-HHHhh-hh Confidence 1121111110 11111111 101 122346666543 333456666665555553 33354 44 Q ss_pred cccC-CC-ccch-H-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCH Q lcl|Aclame:pro 378 FSFD-GR-SMKT-A-TEIVSENDLTYRTRNDHVYEVEQFIK-GLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDR 452 (517) Q Consensus 378 ~~~~-~~-~~~T-A-tei~a~~~~~~~t~~~~~~~~~~al~-~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~ 452 (517) ++-+ ++ +..| | .++- +.-...-+..-.+.+...|. +|++.++.+ + ++...+...-+.+.|+..-.+|. T Consensus 305 lTs~~~~g~~gS~a~g~vh--~~v~~di~~aDa~~i~~tln~~Li~~l~~~----N-~~~~~~~~~~p~~~~~~~e~eDl 377 (526) T protein:vir:79 305 LTSTTSQSGGGAFALGQVH--NEVRHDILASDARQLAATLSRDLLWPLLVL----N-RPGSPDVRRAPRLVFDLREQADI 377 (526) T ss_pred hccccccCcchhhhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----C-CCCcCCccccceEEeCCCCcccH Confidence 4332 11 1111 1 1111 11122233445667777785 588877754 2 22222223345677887788888 Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHhhCCCCHHHHHHHHHHHHHhccccCCCCCc--cc-c------CCCCCCCCC Q lcl|Aclame:pro 453 SALLRFYGQAKTFGFIPTVEAIQRIFKVPKKTAEQWLEEIRKDQIELDPVTIS--QR-A------QKRMFGDEE 517 (517) Q Consensus 453 ~~~~~~~~~~~~~G~~S~~~~l~~~~~~~eeea~~el~~i~~E~~~~~~~~~~--~~-~------~~~~~G~ee 517 (517) .+.++.+.+++..|+--.+.++.+.+|+.+.+..+.+-. ....+.+.... .. . .......++ T Consensus 378 ~~~a~~~~~L~~~G~~i~~~~i~e~~gip~~~~~e~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (526) T protein:vir:79 378 TSMAQSIPALVNVGLEIPSAWVYDKLGIPQPAKNEPVLR---PAAQPAILSRQHGQRVAALATIVGPRYGDQQA 448 (526) T ss_pred HHHHHHHHHHHhCCCcCCHHHHHHHhCCCCCCCchhhcc---ccCCccccccccccccccccccccccCchhhH Confidence 888999999999998555577889999865432222211 11111111000 00 0 000001111 No 252 >protein:vir:858 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:18 # MgeName: bIL170 # Cross-refs: genbank:acc:NP_047117;genbank:gi:9630570;genbank:GeneID:1261758 Probab=86.23 E-value=0.047 Score=27.86 Aligned_cols=360 Identities=14% Similarity=0.144 Sum_probs=109.3 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHH-HHHHHHHHHHHhcCCCccc---ccccccCccccccccccChH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPN-ELARIERNLRQYEGDYPQV---EYINSQGKIQERDYMTLNLR 76 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~i~~~~~~Y~g~~~~~---~~~~~~~~~~~~~~~~ln~~ 76 (517) ||+|.|++.+.+.-.. ....+...... .++++..+ .++.| ..-.+.-.-+ .++......... ... T Consensus 1 M~~f~k~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~v~~~v----~~ia~~iA~lp~~~~~~~~~~~~~~-----~~~ 69 (378) T protein:vir:85 1 MNLFGKVVSFSRGKLN-NDTQRVTAWQN-EAVEYTSAFVTNIH----NKIANEITKVEFNHVKYKKSDVGSD-----TLI 69 (378) T ss_pred Cchhhhhhhhhhcccc-cCCcceeeeec-cchhhhhHHHHHHH----HHHHHhHhhCceeEEEEeccccccc-----ccc Confidence 9999999988763111 11111110000 00110000 00000 0111110000 011000000000 000 Q ss_pred HHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeCCeeEEE Q lcl|Aclame:pro 77 KLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDNGEIEFS 156 (517) Q Consensus 77 ~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~g~~~i~ 156 (517) ...-+.++.||-.+|-.. ....+ |.. ..+...+-.|.+++.|.+++ T Consensus 70 ~~~~~~l~~lL~~~PN~~---------------~t~~~----------f~~---~~~~~lll~Gnayi~~i~~~------ 115 (378) T protein:vir:85 70 SMAGSDLDEVLNWSYKGE---------------HNSME----------FWQ---KVIKKLLCTRYVDLYPIFDS------ 115 (378) T ss_pred ccccchHHHHHhccCCCC---------------CCHHH----------HHH---HHHHHHhhcCCeEEEEeecC------ Confidence 011122333332222110 00112 222 23334445577776554332 Q ss_pred EEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCccccccccc Q lcl|Aclame:pro 157 WALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELY 236 (517) Q Consensus 157 ~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~ 236 (517) ..+.....+ .. ++.+.|..-|. .++.+-++- .. .+| .+...- T Consensus 116 -------------~~g~~~~~~------~~-~~~~~~~~~dv------------ih~~~~~~~--~~-~~~---~~~~a~ 157 (378) T protein:vir:85 116 -------------ETGELLDLL------FA-NDKKEYKPEEL------------VRLVSPFYI--NE-DTS---ILDNAL 157 (378) T ss_pred -------------CCceEEEEE------ec-CCCEEEcccce------------EEEecCcCc--cc-hhh---HHHHHH Confidence 111110000 00 01111110000 000000000 00 000 000000 Q ss_pred CCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccc--eeecchHHhccCC Q lcl|Aclame:pro 237 EGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQR--TVFVSDVMLRTVP 314 (517) Q Consensus 237 ~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~--~i~v~~~~l~~~~ 314 (517) ..+... ...| .|-+ +++.+. .++ .+..+.+-+.|..+......+.. ++.| T Consensus 158 ~~~~~~-~~~~--~~~g-~l~~~~----------~l~-----~~~~~~~~~~~~~~~~~~~~~~~~g~~~v--------- 209 (378) T protein:vir:85 158 ASIQTK-LEQG--KLRG-LLKINA----------FLD-----IDNTQEYREKALATIKNMQEGSSYNGLTP--------- 209 (378) T ss_pred HHHHHH-HhcC--Ccce-EEEeCC----------cCC-----HHHHHHHHHHHHHHHHHhhccccccccee--------- Confidence 000000 0001 1111 111110 000 00111111111111111100000 0000 Q ss_pred CCcccccCccCCcccceeeeecCCCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHHHHH Q lcl|Aclame:pro 315 DESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVSE 394 (517) Q Consensus 315 ~~~~~~~~~~fd~~~~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a~ 394 (517) . +++-.++.++.+....+ ++.++...++|+...|++|..+. + |..|... T Consensus 210 ----------------------l-~~g~~~~~l~~~~~~~~-~~~~~~~~~~Ia~~fgVPp~~l~--~----s~~e~~~- 258 (378) T protein:vir:85 210 ----------------------V-DNKTEIVELKKDYSVLN-KDEIELIKSELLTGYFMNENILL--G----TATQEQQ- 258 (378) T ss_pred ----------------------c-CCCceEEeccCChhhhh-HHHHHHHHHHHHHHhCCCHHHhc--C----CchHHHH- Confidence 0 11112333332222222 34455556789999999998873 1 1122111 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC------C-CCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCC Q lcl|Aclame:pro 395 NDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFG------G-EIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGF 467 (517) Q Consensus 395 ~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~------~-~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~ 467 (517) ...++.+|..++..|-.-.+. .++. + ......++.++++.-...|..+.++.+..++.+|+ T Consensus 259 -----------~~f~~~tL~P~~~~ie~~l~~-kLl~~~er~~~~~~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~G~ 326 (378) T protein:vir:85 259 -----------IYFYNSTIIPLLIQLEKELTY-KLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPI 326 (378) T ss_pred -----------HHHHHHHHHHHHHHHHHHHHh-hcCChhhhhhhhhccccceeeecchhhhhcCHHHHHHHHHHHHhCCC Confidence 112233333333332221110 1110 0 00112235566666677899999999999999999 Q ss_pred CCHHHHHHhhCCCCHHH-HHHHHHHHHHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 468 IPTVEAIQRIFKVPKKT-AEQWLEEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 468 ~S~~~~l~~~~~~~eee-a~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) |+.-+++++ .|+..-+ -+.-+ +..--...+....++....+..+++| T Consensus 327 ~T~NE~R~~-lgl~p~~gGD~~~--~~~N~~~~~~~~~~~~~~~~~~~~~e 374 (378) T protein:vir:85 327 FTQNQLLVK-MGEQPIEGGDIYI--ANLNAVAVKNLSDLQGSRKDVASTDE 374 (378) T ss_pred cCHHHHHHH-hCCCCCCCCCeEe--ecccccccccchhhcCccCCCCCCCC Confidence 999997654 4654211 11000 00000111111222222233333333 No 253 >protein:vir:95965 Length: 385 # NCBI annotation: ORF011 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1594 # MgeName: 2638A # Cross-refs: genbank:acc:YP_239800;genbank:gi:66395461;genbank:GeneID:5132882 Probab=85.19 E-value=0.055 Score=27.50 Aligned_cols=366 Identities=11% Similarity=0.041 Sum_probs=126.9 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccChHHHHH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLRKLSA 80 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~~~i~ 80 (517) ||+|++ +|++-.. . ....+.+...... ...+++. +.+ ...-..|| T Consensus 1 Mg~f~~---~f~~~~~------~-------~~~~~~~~~~~~~-~~~a~~~--~~v----------------~~~i~~ia 45 (385) T protein:vir:95 1 MGLFDS---VFKRHSE------L-------SWMYDLEFLQDKS-KKAYLKQ--IAL----------------NTVVEMVA 45 (385) T ss_pred Cchhhh---hhccCcc------c-------ccccchhhhhccc-hhhhhhh--HHH----------------HHHHHHHH Confidence 999955 4543110 0 0000000000000 0000000 000 01113444 Q ss_pred HHHhhhhcCCcceeEecCcccccccccchhHHHHHHHH-HHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeCCeeEEEEEc Q lcl|Aclame:pro 81 DVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQH-VFQHNKFIKNLSDYLEPTFALGGLTVRPYVDNGEIEFSWAL 159 (517) Q Consensus 81 ~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~-~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~g~~~i~~v~ 159 (517) +.+|++ |..+.=.+.. ....+...|+. --.......-++.++.+.+-.|.+++.+..+++. ++ T Consensus 46 ~~ia~~----p~~~~~~~~~-------~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~i~~~~~~~~-----~~ 109 (385) T protein:vir:95 46 RTISQS----EFRVMKNNTK-------EKGTLYYLLNVRPNRNQNAVDFWQKFIFKLIMDNEVLVVKNDEGHF-----FV 109 (385) T ss_pred HHHccc----ceeeeecCcc-------ccchHHHHHhcccCcCCCHHHHHHHHHHHHhhcCceEEEEecCCCe-----ee Confidence 444443 2211101110 01111222210 0000011222233445555567666544322221 11 Q ss_pred CCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccccCCC Q lcl|Aclame:pro 160 ANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEGM 239 (517) Q Consensus 160 a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l 239 (517) +..+.+. .. .... ...+| .... ..|.+. ..++- T Consensus 110 ~~~~~~~--~~-----~~~~---------~~~~~-~~~~----------~~~~~~-------------~~~~~------- 142 (385) T protein:vir:95 110 ADDFEKE--DE-----LGLY---------SHRFT-NVLV----------NDFEFK-------------RVFTM------- 142 (385) T ss_pred ccccccc--cc-----cccc---------cccce-eeee----------ccccee-------------eeecc------- Confidence 1111110 00 0000 00000 0000 000000 00000 Q ss_pred CcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeec--chHHhccCCCCc Q lcl|Aclame:pro 240 QEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRTVFV--SDVMLRTVPDES 317 (517) Q Consensus 240 ~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v--~~~~l~~~~~~~ 317 (517) . -+.||+.+.++... +|.|.+.-+..+++. .++.. ...+.++-++ +.... ..+.. T Consensus 143 -~----------eiih~~~~~~~~~~----~G~s~~~~~~~~i~~---~~~~~---~~~~~~~g~l~~~~~~~--~~~e~ 199 (385) T protein:vir:95 143 -D----------DVIYLKYNNQKLDA----FSLGLFEDYGEIFGR---MIDLQ---MLNNQIRGILKVDATKF--YNKEK 199 (385) T ss_pred -c----------cEEEecCCCCCccc----ccchHHHHHHHHHHH---HHHHH---HhcCCCceEEEeCCccC--CCHHH Confidence 0 02334443333222 366666555544432 22221 1233333222 11100 00000 Q ss_pred ccccCccCCcccceeeeecC-------CCCCCcceEEecc------cChHHHHHHHHHHHHHHHHHhCCCccccccCCCc Q lcl|Aclame:pro 318 GMPPPQVFDPDVNVYKSIRM-------GTDEEFVKDVTHD------IRTEQYKEAINQALRTLEMELKLSVGTFSFDGRS 384 (517) Q Consensus 318 ~~~~~~~fd~~~~~y~~~~~-------~~~~~~v~~~~~d------ir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~ 384 (517) .......|. ..|.+... -+++..++.++.. ..+.++.+..+...++|+...|++|..++ +. T Consensus 200 ~~~~~~~~~---~~~~g~~~~~~~i~~l~~g~~~~~l~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgVpp~~l~---~~ 273 (385) T protein:vir:95 200 QKELQAYID---TLFDAFQNNTIAVVPLTEGLAYEEHSNRGAAQSAQQFSELNELKKTVLTDVARMIGVPPSLVL---GE 273 (385) T ss_pred HHHHHHHHH---HHhhhhhhcCCceEEcCCCceeEeecccccccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHhc---CC Confidence 000000010 01111100 0122223333321 12456777778888899999999999884 11 Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHh Q lcl|Aclame:pro 385 MKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKT 464 (517) Q Consensus 385 ~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~ 464 (517) ..++.+ .....++.+|.-++..|....+. .++.........+.++++.-+..|.++.++...+++. T Consensus 274 ~sn~e~-------------~~~~~~~~~l~P~~~~ie~~l~~-~L~~~~~~~~~~~~fd~~~l~~~D~~~~~~~~~~~~~ 339 (385) T protein:vir:95 274 MADLEK-------------TIESYLQFCINPLLRKIEAELNS-KFFYQDEYLNDDMHIKVVGIDKRDPLKLSEAIDKLVA 339 (385) T ss_pred CcCHHH-------------HHHHHHHHHHHHHHHHHHHHHHh-hcCChhhcccceEEEechhhhccCHHHHHHHHHHHHh Confidence 122211 12233333344444433332221 1222111123357777778788899999999999999 Q ss_pred cCCCCHHHHHHhhCCCCH---HHHHHHHHHHHHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 465 FGFIPTVEAIQRIFKVPK---KTAEQWLEEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 465 ~G~~S~~~~l~~~~~~~e---eea~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) +|+|+.-+++..+ |+.. +..++-+-. . .-.+.+. ..|....+| T Consensus 340 ~g~lt~NE~R~~~-g~~p~~~~~gd~~~~~--~-----n~~~~~~--~kgge~~~e 385 (385) T protein:vir:95 340 SGTFTRNQVRIMT-GEEPADDPELDKFIIT--K-----NLQSADA--FKGGESNEE 385 (385) T ss_pred CCCcCHHHHHHHh-CCCCCCCCCCceeeec--c-----cceeccc--ccCCCCCCC Confidence 9999999976543 5532 222211110 0 0000011 112112222 No 254 >protein:vir:6596 Length: 521 # NCBI annotation: portal vertex protein of head # Family: family:all:1036 # MgeID: mge:139 # MgeName: RB49 # Cross-refs: genbank:acc:NP_891727;genbank:gi:33620636;genbank:GeneID:1725288 Probab=84.82 E-value=0.057 Score=27.38 Aligned_cols=423 Identities=11% Similarity=0.079 Sum_probs=196.2 Q ss_pred CchHHHHH-HHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccChHHHH Q lcl|Aclame:pro 1 MKVIQRIK-NFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLRKLS 79 (517) Q Consensus 1 m~~~~~ik-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~~~i 79 (517) |+=....= .+.+. ...+.. .......-|+++|.+... |.+. +.-..| T Consensus 46 ~~~~~~~~~g~~~~---~~~~e~-----------~~~~~~eLI~~YR~ma~~--pEvd----------------~Av~eI 93 (521) T protein:vir:65 46 DNSPASSWNSLTQQ---FYSTDQ-----------KISTTKQLVNTYRGLMNN--HEVE----------------NAVQNI 93 (521) T ss_pred CCccccccccceee---eccccc-----------hhhhHHHHHHHHHHHhhc--cchh----------------hHHHHh Confidence 22221111 11110 000000 012345678888888533 3331 000011 Q ss_pred HHHHh-hhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeC----CeeE Q lcl|Aclame:pro 80 ADVLS-GLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDN----GEIE 154 (517) Q Consensus 80 ~~~~A-~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~----g~~~ 154 (517) +++.. .=-..+++++.+++... .+...++-.+..+.++.--+|.++..+....+.+.|..+||..+|+ |=.. T Consensus 94 Vneaiv~d~~~~pV~l~L~~~~~---s~~iK~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fhkiid~~pk~GI~E 170 (521) T protein:vir:65 94 VNDAIVFEEGHEVVSLNLEATGF---SESVKERIHEEFKDLLNTIQFDRRGQDMFRRWYVDSRIFFHKIIGKNPKDGIVE 170 (521) T ss_pred hcceeEecCCCceEEEEeccccc---chHHHHHHHHHHHHHHHHhccchhhhHHHhhhhhcceeEEEEEEcCCcccccee Confidence 11110 00112244454443221 1222334456667777777899999999999999999999999873 3356 Q ss_pred EEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCccccccc Q lcl|Aclame:pro 155 FSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEE 234 (517) Q Consensus 155 i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~ 234 (517) +..++|.++.++..........+ ...++-..|| ++.++ .-.|......|..+ .+..+|-+. T Consensus 171 Lr~lDPr~i~~vr~i~k~~~~~~------~v~~~~~e~f----~Y~~~-----~~~~~~~g~~~~~~----~~vkI~~dA 231 (521) T protein:vir:65 171 LRQLDPRNLEYVREIITEDTPEG------KIYKATKEYF----IYTVG-----NSSYCAGGQVFSPN----SRVKIPRSA 231 (521) T ss_pred eeeeCCcceeeeeeecccccCCc------ceecceeeee----eeecC-----CcceeccceeecCC----cceeechhh Confidence 88899998877643211111000 0000000111 11111 01111111111110 112222111 Q ss_pred ccCCCCcceEE-cCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHH---Hhccceeec-c--- Q lcl|Aclame:pro 235 LYEGMQEKTYI-QGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEI---KMGQRTVFV-S--- 306 (517) Q Consensus 235 ~~~~l~~~~~~-~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~---~~~~~~i~v-~--- 306 (517) + ++. .|+ .+.....-+|-+..|.-.+-.| +..-..+-.+ |.-.+|||- + T Consensus 232 I-------~y~hSGl---------------~d~~~~~i~syLhkAiKp~NQL-km~EDAlVIYRitRAPeRRvFYIDvGn 288 (521) T protein:vir:65 232 I-------TYAHSGL---------------MDCDDKYIIGYLHRAVKPANQL-KLLEDAMVVYRITRAPERRVFFIDTGN 288 (521) T ss_pred e-------eeeeccc---------------eeCCCCeeeecchhhhHhHHhh-HHHHhhHHHHhhhccccceEEEEecCC Confidence 0 011 111 1222223345565555444444 3333333333 455567763 1 Q ss_pred ------hHHhcc----C-----CCCcccccCccCCcccceeeeecCC------CCCCc--ceEEecccChHHHHHHHHHH Q lcl|Aclame:pro 307 ------DVMLRT----V-----PDESGMPPPQVFDPDVNVYKSIRMG------TDEEF--VKDVTHDIRTEQYKEAINQA 363 (517) Q Consensus 307 ------~~~l~~----~-----~~~~~~~~~~~fd~~~~~y~~~~~~------~~~~~--v~~~~~dir~e~~~~~l~~~ 363 (517) +.+|+. . -+...+. -.|++.++++.-+ +++.| |+++..- .--.-.+-++-+ T Consensus 289 lPk~KAeqYl~~im~k~kNklvYDa~TGe-----v~ddrk~msMlEDyWLpRReGgrgTEItTLpGg-qnlgem~DV~YF 362 (521) T protein:vir:65 289 MNNRKAAQHMNSVAQSFKNRVVYDASTGK-----LKNQQANLSMTEDYWLQRRDGKAITDVTTLPGA-SGMSDIDDIRYF 362 (521) T ss_pred CCchhHHHHHHHHHHhcCceeEeeccccc-----ccccccccchhhhhcccccCCCCccceeecccC-CCcChHHHHHHH Confidence 111111 0 0111111 1244445544211 33333 4444332 222233445556 Q ss_pred HHHHHHHhCCCccccccCCCc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCC--cc Q lcl|Aclame:pro 364 LRTLEMELKLSVGTFSFDGRS---MKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPS--AE 438 (517) Q Consensus 364 l~~i~~~~g~s~~~~~~~~~~---~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~--~~ 438 (517) .+.+....+.+.+-+..++++ ..-++||.-..-....-+.+++..|..-+.++++.=|-|- +.+....+. .. T Consensus 363 ~kkLy~aLnVP~sRl~~e~~~~~~~gr~~EItRDEiKF~KFI~rLR~rFs~lf~~~L~~qLilK---giit~eew~~i~~ 439 (521) T protein:vir:65 363 NRKLYEALRVPLSRSNLSDANMVIGGDGSEITRDELEFSKFIRTLQSQFSEVLRDPLKYNLILK---NVITEDDWDREIN 439 (521) T ss_pred HHHHHHHhCCCceeccCCCCcceeccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---cCCCHHHHHHHhh Confidence 677788888888777554432 2346777666656666777788888888888777655432 122221111 22 Q ss_pred ceEEEeCCCccCCHHHHHHHHHHHH-----hcC----CCCHHHHHHhhCCCCHHHHHHHHHHHHHhccccCCCCCccccC Q lcl|Aclame:pro 439 HIGVDFDDGVFQDRSALLRFYGQAK-----TFG----FIPTVEAIQRIFKVPKKTAEQWLEEIRKDQIELDPVTISQRAQ 509 (517) Q Consensus 439 ~v~i~f~d~i~~d~~~~~~~~~~~~-----~~G----~~S~~~~l~~~~~~~eeea~~el~~i~~E~~~~~~~~~~~~~~ 509 (517) .|.++|...---.+..+++.+.+-. ..+ ..|.+...++...+||+|.+++.+.|++|..+.--...+ T Consensus 440 ~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~S~dyi~k~ILr~tDeei~~~~k~I~~E~~~~~~~~p~---- 515 (521) T protein:vir:65 440 NIKVVFHRDSYYTEVKDAEILERRIGLIERITPYIGKYFSNQTVMRDILKYTDDQMDTEKKQIEEEANDPRFKQTP---- 515 (521) T ss_pred cceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHhccCHHHHHHHHHHHHHhhhCCCCCCCc---- Confidence 3677776554444444444332211 112 468888777888999999999999999987543211110 Q ss_pred CCCCCCCC Q lcl|Aclame:pro 510 KRMFGDEE 517 (517) Q Consensus 510 ~~~~G~ee 517 (517) -++| T Consensus 516 ----~~~~ 519 (521) T protein:vir:65 516 ----DEIE 519 (521) T ss_pred ----cccc Confidence 0111 No 255 >protein:vir:78641 Length: 278 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1855 # MgeName: tp310-2 # Cross-refs: genbank:acc:YP_001429941;genbank:gi:156603995;genbank:GeneID:5525387 Probab=80.23 E-value=0.097 Score=26.14 Aligned_cols=273 Identities=11% Similarity=0.021 Sum_probs=109.8 Q ss_pred cCCCcccccccccCccccccccccChHHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHH Q lcl|Aclame:pro 50 EGDYPQVEYINSQGKIQERDYMTLNLRKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNL 129 (517) Q Consensus 50 ~g~~~~~~~~~~~~~~~~~~~~~ln~~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~ 129 (517) -++-+...++.. +..-+.++.+|...| .- ......-+ T Consensus 1 ia~l~~~~~~~~---------------~~~~~~l~~lL~~~P-N~---------------------------~~t~~~f~ 37 (278) T protein:vir:78 1 MASLPLKMYEDY---------------KVVNTEVSDLLTVSP-NN---------------------------SLSSFDFI 37 (278) T ss_pred CccceeEEEecC---------------cccccHHHHHHHhcC-CC---------------------------CCCHHHHH Confidence 111111111100 001122333332111 10 00122234 Q ss_pred HHHHHHHHhhCCEEEEEEEe-CCee-EEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeec Q lcl|Aclame:pro 130 SDYLEPTFALGGLTVRPYVD-NGEI-EFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEG 207 (517) Q Consensus 130 ~~~~~~a~~~G~~~~k~~~d-~g~~-~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~ 207 (517) ..++.+.+..|.+++.+..+ +|++ .+..++|+.+-+...+.++. .+| .++ T Consensus 38 ~~~~~~ll~~Gna~~~i~r~~~G~~~~l~~l~~~~v~v~~~~~~~~-----------------~~y-~~~---------- 89 (278) T protein:vir:78 38 NQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRE-----------------LYY-SIH---------- 89 (278) T ss_pred HHHHHHHhhcCCEEEEEEECCCCcEEEEEEECCceeEEEEcCCCce-----------------EEE-EEE---------- Confidence 45566777889988887765 4543 56667777765532222111 111 000 Q ss_pred cceEEEEEEEeecCCccccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHH Q lcl|Aclame:pro 208 ESLYVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKIND 287 (517) Q Consensus 208 ~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~ 287 (517) ..+ |..+.+ + +.+ ++||+.+.+ ...++|+|.+..+...++.... T Consensus 90 ------------~~~----g~~~~~---~---~~e----------vih~~~~~~----~~~~~G~s~~~~~~~~i~~~~~ 133 (278) T protein:vir:78 90 ------------AAT----GNKLIV---H---NMD----------MLHFKHIVA----SNMVQGISPIDVLKNTTDFDNA 133 (278) T ss_pred ------------cCC----ceEEEE---c---ccc----------EEEECCCCC----CCCeeeccHHHHHHHHHHHHHH Confidence 000 111110 0 001 345654322 2345799998888887776554 Q ss_pred HHHHHHHHHHhccceeecchHHhccCCCCcccccCccCCccc-ceeeeecCCCCCCcceEEecccChHHHHHHHHHHHHH Q lcl|Aclame:pro 288 TYDQFWWEIKMGQRTVFVSDVMLRTVPDESGMPPPQVFDPDV-NVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRT 366 (517) Q Consensus 288 ~~s~~~~e~~~~~~~i~v~~~~l~~~~~~~~~~~~~~fd~~~-~~y~~~~~~~~~~~v~~~~~dir~e~~~~~l~~~l~~ 366 (517) .-..-...+..+..-++....-+. +.........|.... .... +-.-+++..++.++......+..+..+...++ T Consensus 134 ~~~~~~~~~~~~~~~i~~~~~~l~---~e~~~~~~~~~~~~~~~~g~-~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~ 209 (278) T protein:vir:78 134 VRTFNLTEMQKPDSFMLKYGSNVG---KEKRQQVLEDFKQYYEENGG-ILFQEPGVEIEPLPKKYVSEDIVASENLTRER 209 (278) T ss_pred HHHHHHHHhcCCCcEEEEeCCCCC---HHHHHHHHHHHHHHhccCCC-ceecCCCceEEEccCChhHHHHHHHHHHHHHH Confidence 433222222233222222111110 000000000110000 0000 00012333466677666777888888888899 Q ss_pred HHHHhCCCccccccCCCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCC-CCCccceEEEe Q lcl|Aclame:pro 367 LEMELKLSVGTFSFDGRS-MKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGE-IPSAEHIGVDF 444 (517) Q Consensus 367 i~~~~g~s~~~~~~~~~~-~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~-~~~~~~v~i~f 444 (517) |+..-|++|..+|...++ -.++.+.. ...++.+|.-++..|....+. .++... ......+ .| T Consensus 210 Ia~~fgVpp~~lg~~~~~~~sn~~~~~-------------~~~~~~~l~P~~~~i~~~ln~-~L~~~~e~~~g~~~--~f 273 (278) T protein:vir:78 210 VANVFQLPSVFLNARSNTNFAKNEELN-------------RFYLQHTLLPIVKQYEEEFNR-KLLTKTDREKIGIL--NL 273 (278) T ss_pred HHHHhCCCHHHhCCCCCCCcccHHHHH-------------HHHHHHHHHHHHHHHHHHHHh-hcCChhHhcCCceE--EE Confidence 999999999999865433 23333221 112222233333322221111 111111 0112234 44 Q ss_pred CCCcc Q lcl|Aclame:pro 445 DDGVF 449 (517) Q Consensus 445 ~d~i~ 449 (517) +-+.. T Consensus 274 ~~~~l 278 (278) T protein:vir:78 274 TLNLI 278 (278) T ss_pred ecccC Confidence 43333 No 256 >protein:vir:108215 Length: 469 # NCBI annotation: gp6 # Family: family:all:2372 # MgeID: mge:2004 # MgeName: Giles # Cross-refs: genbank:acc:YP_001552335;genbank:gi:160700655;genbank:GeneID:5758935 Probab=76.39 E-value=0.14 Score=25.33 Aligned_cols=406 Identities=11% Similarity=0.063 Sum_probs=149.4 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHH-----------HHHHhcCCCcccccccccCcccccc Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIER-----------NLRQYEGDYPQVEYINSQGKIQERD 69 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~-----------~~~~Y~g~~~~~~~~~~~~~~~~~~ 69 (517) +|=+- -+-+..++..+. ..+. .+...-.=.-+-|+.|.+ =+.--.+-...+.. .+. T Consensus 14 ~g~~~--~~~~~~~~~~~~--~~e~-~~~lr~~~~~~ly~~m~e~D~~i~s~l~~rk~av~~~~w~v~p---~~~----- 80 (469) T protein:vir:10 14 AGYVF--GSGVVDGWTVWD--PFEQ-TPELQWPQSVAVYSRMDNEDSRVTSLLEAISLPIRSTPWRIRA---NGA----- 80 (469) T ss_pred hhhhh--hcccccchhhcc--cccc-ccccccccchHHHHHHHhhChHHHHHHHHHHHHHhcCCceEec---CCC----- Confidence 22110 000000011000 0000 000000000001111111 11111111111100 000 Q ss_pred ccccChHHHHHHHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEe Q lcl|Aclame:pro 70 YMTLNLRKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD 149 (517) Q Consensus 70 ~~~ln~~~~i~~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d 149 (517) +=-.++.++..+...+.++... +..+.... ...|...+.+.+-.|..+|-.++-+.|. T Consensus 81 --~~e~~~~~~~~L~~~~~~~~~~-------------------~~~~~~~~-~~~w~~~l~~~l~~a~~~G~s~~Eivw~ 138 (469) T protein:vir:10 81 --SDEVTEFVSRNLMVPIDGEDDV-------------------RNPGRSRG-RFSWAEHLEEVTSPTLQFGHAVFEQVYR 138 (469) T ss_pred --CHHHHHHHHHHHHhhhhhhhhh-------------------hhhhhhhc-cccHHHHHHHHHHHhhhhCceeeeeeee Confidence 0001122222222222221100 01111111 1246666777777788889999988886 Q ss_pred C------CeeE---EEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeec Q lcl|Aclame:pro 150 N------GEIE---FSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKS 220 (517) Q Consensus 150 ~------g~~~---i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~ 220 (517) . |... +.+.++..+.-..++. +++...++.. .+. ..+.-..|.. T Consensus 139 ~~~~~~dG~~~~~~l~~rp~~~i~~~~~~~----------------~~~l~~~~~~---~~~--------~~~~~~~~~~ 191 (469) T protein:vir:10 139 PRNQSPDGRFWLRKLAPRPQWTISKFNVAP----------------DGGLESIEQI---APP--------ARTRGSLYVA 191 (469) T ss_pred cccccCCCceeeeeeeecCcccceeeeecc----------------CCceeeeeec---Ccc--------cccccccccC Confidence 3 2222 1222222111000000 0111111100 000 0000000100 Q ss_pred CCccccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHH-Hhc Q lcl|Aclame:pro 221 DNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEI-KMG 299 (517) Q Consensus 221 ~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~-~~~ 299 (517) .. -|.++ ++. + |+++. .+....+|+|.|.+..|--..--=+..+..|+.-+ +.| T Consensus 192 ~~---~~~~l---------p~~-------k--~i~~~----~~~~~g~p~g~gLlr~~~~~~~fK~~~~~~w~~f~EryG 246 (469) T protein:vir:10 192 NI---APPEI---------PVN-------R--LVVYT----RNKRPGQWQGKSILRSAYKHWLLKDKLLRIEAATAERNG 246 (469) T ss_pred CC---Ccccc---------ccC-------c--EEEEE----ecCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHcC Confidence 00 01111 111 1 23332 12245789999999988755333333444455544 455 Q ss_pred cceeecchHHhccCCCCcccccCccCCcccceeeeecCC-------CCCCcceEEecccChHHHHHHHHHHHHHHHHHhC Q lcl|Aclame:pro 300 QRTVFVSDVMLRTVPDESGMPPPQVFDPDVNVYKSIRMG-------TDEEFVKDVTHDIRTEQYKEAINQALRTLEMELK 372 (517) Q Consensus 300 ~~~i~v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~~~~~-------~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g 372 (517) -+..+. +.+.+...... +.-.+....+..+ ..+..++.++.......|.+.++.+=++|+. +- T Consensus 247 ~P~~vg------ky~~~a~~~ek---~~l~~a~~~~~~g~~a~~iip~~~~ie~~ea~g~~~~~~~li~~~d~~Isk-~i 316 (469) T protein:vir:10 247 MGIPVG------TASSATDEDEV---RKMAALARSVRGGINAGVGLAQGQILELLGVSGNLPDIRRAIEGHDRSIAL-SG 316 (469) T ss_pred CcceEE------ecCCCCCHHHH---HHHHHHHHHHhcCCceEEEccCCceEEEeecCCCchHHHHHHHHHHHHHHH-HH Confidence 554433 11111111000 0000111111100 1234567777666666777777776666644 33 Q ss_pred CCccccccCCCccchH-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccC Q lcl|Aclame:pro 373 LSVGTFSFDGRSMKTA-TEIVSENDLTYRTRNDHVYEVEQFIK-GLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQ 450 (517) Q Consensus 373 ~s~~~~~~~~~~~~TA-tei~a~~~~~~~t~~~~~~~~~~al~-~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~ 450 (517) ++ +|++.+++|..-| .++- ..-....+..-.+.+...|. +|++-++.+ + ++. ...-+.+.|+. +-. T Consensus 317 LG-~tlTs~~~gGS~a~~~vh--~ev~~d~~~sDa~~i~~tln~~li~~l~~l----N-~g~---~~~~P~~~~~~-~e~ 384 (469) T protein:vir:10 317 LA-HFLNLDGKGGSYALASVL--EDPFTQAVHAYATSICRIANQHIIEDLVDI----N-FGV---DTPAPVLTFDP-IGS 384 (469) T ss_pred hc-ccccccCccchhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----c-CCC---CCCccEEEecC-CCC Confidence 44 3333332221112 1221 11122334455667778885 588876653 2 121 12225677865 445 Q ss_pred CHHHHHHHHHHHHhcCCCC----HHHHHHhhCCCCHHHHHHHHHHHHHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 451 DRSALLRFYGQAKTFGFIP----TVEAIQRIFKVPKKTAEQWLEEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 451 d~~~~~~~~~~~~~~G~~S----~~~~l~~~~~~~eeea~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) +.+..++.+..++.+|++. .+.++.+.+|+.+.+-.+.+..-.+.++...+..... .....|..+ T Consensus 385 ~~~~~a~~i~~l~~~G~~~~~~~~~~~~~e~~gip~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 453 (469) T protein:vir:10 385 RQDLTAAAVKLLYDAGVFDDDPAVKRAIRQRFNLPSELNDTPSAEPEEPAAVPNQSAAPA--RTRSSGNAD 453 (469) T ss_pred cHHHHHHHHHHHHhcCCccCccccHHHHHHHhCCCCCCCCcccccchhcccCCCCCcccc--ccCCCCCcc Confidence 6667788888999999842 4578889999865432222221111111111111111 111111111 No 257 >protein:vir:81218 Length: 423 # NCBI annotation: gp3, phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1893 # MgeName: BFK20 # Cross-refs: genbank:acc:YP_001456733;genbank:gi:157168376;interpro:IPR006427;interpro:IPR006944;uniprot:Q9MBK2;genbank:GeneID:5580341 Probab=70.91 E-value=0.2 Score=24.38 Aligned_cols=395 Identities=10% Similarity=0.035 Sum_probs=141.1 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCcccccc----cccc-Ch Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERD----YMTL-NL 75 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~----~~~l-n~ 75 (517) ||++++|...-.+ .+.++.+ |..|... .............. ...+ .- T Consensus 1 Mg~~~~~~~~~~~------------------~~~~~~~---------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~ 52 (423) T protein:vir:81 1 MGFLQKLGLAPSV------------------VATPEPI---------ELVGPIF-ESLKLSTKNMTVEQIWEDQPHLRTV 52 (423) T ss_pred CchhHhhcccccc------------------ccCcccc---------ccccccc-cccccccchhhHHHHHHhhhHHHHH Confidence 9999887421100 0011111 0111100 00000000000000 0000 01 Q ss_pred HHHHHHHHhhhhcCCcceeE-ecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeCCeeE Q lcl|Aclame:pro 76 RKLSADVLSGLVFNEQCEVY-VSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDNGEIE 154 (517) Q Consensus 76 ~~~i~~~~A~ll~~e~~~i~-~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~g~~~ 154 (517) -..||+..|+| |..+- -......+. .....+...+.+-=.......-++.++.+.+-.|.+++.+.-|.+.. T Consensus 53 i~~ia~~ia~l----p~~~~~~~~dg~~~~--~~~~~~~~ll~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~rd~~~~- 125 (423) T protein:vir:81 53 TTFIARNVASL----QLQAFERVEDGGRER--VREGHLARVCKLANSDMTMYDLLERTMFDLCLYDEFFWLLPGDLGVD- 125 (423) T ss_pred HHHHHHhHhhC----ceEEEEEecCCceee--eccchHHHHhhcCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCcC- Confidence 13455555543 22221 010000000 01111122221100000112223334556666787776665554321 Q ss_pred EEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCccccccc Q lcl|Aclame:pro 155 FSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEE 234 (517) Q Consensus 155 i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~ 234 (517) ...+|+.-..-. .+-. .....+.+...|+ + +..... -|..+.+. T Consensus 126 ------~~~~~l~p~~~~---~v~~--~~~~~~~~~~~Y~------------------~----~~~~~~--~g~~~~~~- 169 (423) T protein:vir:81 126 ------TPTLDIRPIPVS---WVQR--RAYKDGWGSLDYI------------------I----IESGDN--DGRSVKVP- 169 (423) T ss_pred ------cceEEEeecccc---eeee--eeccCCCcceEEE------------------E----EEecCC--CceEEEEc- Confidence 111221100000 0000 0000001111111 1 111111 12222111 Q ss_pred ccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHH-HHhc-cceeecchHHhcc Q lcl|Aclame:pro 235 LYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWE-IKMG-QRTVFVSDVMLRT 312 (517) Q Consensus 235 ~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e-~~~~-~~~i~v~~~~l~~ 312 (517) + --++|++.+.++ +..+|+|.+.-+...+..... -.++... |+.| .+..++ .. T Consensus 170 ------~---------~evih~r~~~~~----~~~~G~spi~~~~~~i~~~~~-~~~~~~~~f~ng~~p~gvi-----~~ 224 (423) T protein:vir:81 170 ------G---------ERVIHRHGYNPK----TMKRGKSPVQSLRDILGEQIE-AAIFRAQMWRNGPRPGMVI-----MR 224 (423) T ss_pred ------c---------cceEEecCCCCC----CccccccHHHHHHHHHHHHHH-HHHHHHHHHhccCCCceEE-----Ee Confidence 0 114566654333 223699988877776665433 3444444 4544 444333 11 Q ss_pred CCCCccccc-Ccc---CCcc-cceeeeecCC-------CCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCcccccc Q lcl|Aclame:pro 313 VPDESGMPP-PQV---FDPD-VNVYKSIRMG-------TDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSF 380 (517) Q Consensus 313 ~~~~~~~~~-~~~---fd~~-~~~y~~~~~~-------~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~ 380 (517) ......... ... +... ...|...... +++..++.++......+..+..+....+|+..-|++|..+|+ T Consensus 225 ~~~~~~~~l~~e~~~~~~~~~~~~~~~~~~n~g~~~vl~~g~~~~~l~~s~~d~q~~e~~~~~~~eIa~~fgVPp~~lg~ 304 (423) T protein:vir:81 225 DPESKAGKWDAESRTRFMANLRASFSPKSSDVGGTLLLEDGMKAENFHTTSKDEQTVETTKLSLQTVAQVYGINPTMVGQ 304 (423) T ss_pred cCcccCccCCHHHHHHHHHHHHHHhccccccCCcceecCCCceEEeccCChhhHHHHHHHHhhHHHHHHHhCCCHHHhcC Confidence 111100000 000 0000 0011110000 122234444444445566677667777899999999999986 Q ss_pred CCCcc-chHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCC--CccceEEEeCCCccCCHHHHH Q lcl|Aclame:pro 381 DGRSM-KTATEIVSENDLTY-RTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIP--SAEHIGVDFDDGVFQDRSALL 456 (517) Q Consensus 381 ~~~~~-~TAtei~a~~~~~~-~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~--~~~~v~i~f~d~i~~d~~~~~ 456 (517) ..++. .+.++ .....+ .++.-+...++.+|... ++..... ...-+.+++++-+..|..+.+ T Consensus 305 ~~~~t~sn~e~---~~~~f~~~~L~P~~~~ie~~l~~~------------L~~~~~~~~~~~~~~fd~~~llr~d~~~r~ 369 (423) T protein:vir:81 305 LDNANYSNVRE---FRKALYGDNLGSWIRIIQDVMNLF------------LLPRVGIDNEKFYFEFNLEEKLRASFEEAA 369 (423) T ss_pred CCCCCcccHHH---HHHHHHHHHHHHHHHHHHHHHhhh------------hcCccccccCccEEEecchhhhccCHHHHH Confidence 54432 12111 111111 22333333333333321 2211111 223355555565667888877 Q ss_pred HHHHHHH-hcCCCCHHHHHHhhCCCCHH-HHHHHHHHHHHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 457 RFYGQAK-TFGFIPTVEAIQRIFKVPKK-TAEQWLEEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 457 ~~~~~~~-~~G~~S~~~~l~~~~~~~ee-ea~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) +....++ ++|+|+.-++++ ..|+..- ..++-+ .|............||++ T Consensus 370 ~~~~~~l~~~G~~T~NE~R~-~~gl~p~~gGD~~~----------~p~n~~~~~~~~~~~~~~ 421 (423) T protein:vir:81 370 EIKRAAVGNVAWMTINEVRA-MDNLPSIDGGDDLA----------RPLNTEFGDSEDAPGEEV 421 (423) T ss_pred HHHHHHHhCCCCcCHHHHHH-HhCCCCCCCcceee----------cccccccCccCCCCCCCC Confidence 7777665 579999988654 4465432 121111 111111111112223333 No 258 >protein:vir:98265 Length: 524 # NCBI annotation: gp20 portal vertex of the head # Family: family:all:1036 # MgeID: mge:1667 # MgeName: RB43 # Cross-refs: genbank:acc:YP_239198;genbank:gi:66391673;genbank:GeneID:3416367 Probab=69.74 E-value=0.22 Score=24.20 Aligned_cols=430 Identities=14% Similarity=0.162 Sum_probs=185.3 Q ss_pred Cch---HH---HHHHHHHHHHHHhhcccchhhhccccCcCCHH---------------------------------HHHH Q lcl|Aclame:pro 1 MKV---IQ---RIKNFFKRGGYALSGQTLKSINDHEKINIDPN---------------------------------ELAR 41 (517) Q Consensus 1 m~~---~~---~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---------------------------------~~~~ 41 (517) |+| +. .+|.|-+.-..... +.+++- ...++.|.. ...- T Consensus 1 ~~~~~~~~~l~~~~~~~~~d~~~~~-~~~~~~--~~s~~~p~~~dGa~~i~~~~~~~~~~g~~~~~y~~~e~~~~~~~eL 77 (524) T protein:vir:98 1 MNFLGFGNVLSFFKNFAREDEIELE-QQLKND--TGSVAPPKNNDGAYEIETDLNNQKYAGVFQQFYSGQDPAIQNKEQL 77 (524) T ss_pred CCCcchhhHHHHhhhhhhhhhhhHh-hhhcCC--cccccCCCCCCCceeecCCCCcceecceeeeeccccccccchHHHH Confidence 332 22 22333221111110 111100 001111110 1122 Q ss_pred HHHHHHHhcCCCcccccccccCccccccccccChHHHHHHHHhhhhcC----CcceeEecCcccccccccchhHHHHHHH Q lcl|Aclame:pro 42 IERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLRKLSADVLSGLVFN----EQCEVYVSDAKDEEKKDNSFKTAHEFIQ 117 (517) Q Consensus 42 i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~~~i~~~~A~ll~~----e~~~i~~~~~~~~~~~~~~~~~~~~~l~ 117 (517) |+++|.+... |.+ -..|-.-.-+.++. +++++.+++... .+...++-.+..+ T Consensus 78 I~~YR~ma~~--pEv-------------------d~Av~eIVneaIv~~~~~~pV~l~L~~~~~---s~~iK~kI~eeF~ 133 (524) T protein:vir:98 78 INTYRGIMSY--PEV-------------------ENAVSEIIDDAIVNEQGKDIITMDLAKTNF---SKAIQDKIVEEFD 133 (524) T ss_pred HHHHHHHhhc--cch-------------------hhHHHhhhcceeEecCCCceEEEEeccccc---chHHHHHHHHHHH Confidence 2222222111 111 01111111111222 244444443321 1222344556677 Q ss_pred HHHhhhhHHHHHHHHHHHHHhhCCEEEEEEEeC----CeeEEEEEcCCeEEEEEEcCCceE-EEEEEEEEEEEecCCcEE Q lcl|Aclame:pro 118 HVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDN----GEIEFSWALANAFYPLRSNSNGIS-EGVMKSVTTKVIGNKTVY 192 (517) Q Consensus 118 ~~l~~n~f~~~~~~~~~~a~~~G~~~~k~~~d~----g~~~i~~v~a~~~~P~~~~~~~~~-~~a~~~~~~~~~~~~~~~ 192 (517) .++.--+|.++..+....+.+.|..+||..+|+ |=..+..++|.++-++.-.-.+.. .+.. ..++ T Consensus 134 ~Il~ll~F~~~~~~~fR~WYVDgRi~fhkiid~~~~kGI~ELr~lDPr~i~~vr~~~~~~~~~~~~------v~~~---- 203 (524) T protein:vir:98 134 NVLNIYDFDNMGARLFRDWYVDSRIYFHKIMHKDESKGIRELRQLDPRCMELIRESITETLDGGVK------VFRG---- 203 (524) T ss_pred HHHHHhccchhhhHHHhhhhhcceeEEEEEEcCCCCcceeeeeeeCCccceeeeeccccccccchh------hccc---- Confidence 777777899999999999999999999999884 334578888888866531100000 0000 0011 Q ss_pred EEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccccCCCCcceEE-cCCCcceEEEecCCccccccCCCCCC Q lcl|Aclame:pro 193 YTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYI-QGLSRPLFNYLKPSGFNNINPHSPLG 271 (517) Q Consensus 193 yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~-~g~~~p~f~~~~~~~~N~~~~~splG 271 (517) |+ |++.+.. ....|...-..|..+ + +..+|-+.+ ++. .|+ +..+ ++ . T Consensus 204 ~~--e~f~Y~~---~~~~~~~~g~~~~~~---~-~ikI~~dAI-------vy~hSGL-------~d~~--~~------i- 251 (524) T protein:vir:98 204 YR--EFFVYSA---PKAGYTYNGQIYQAN---Q-KIKIPRSAI-------VYAHSGL-------EDCS--NN------I- 251 (524) T ss_pred ee--eeeeecc---CCCccccccceecCC---C-ceeechhhe-------eeeccCc-------ccCC--CC------e- Confidence 11 2221110 001111111112111 0 112221111 111 111 1110 00 0 Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHH---Hhccceeec-c---------hHHhcc----CC-----CCcccccCccCCccc Q lcl|Aclame:pro 272 LGITDNSVSTLKKINDTYDQFWWEI---KMGQRTVFV-S---------DVMLRT----VP-----DESGMPPPQVFDPDV 329 (517) Q Consensus 272 ~S~~~~~~~lid~lD~~~s~~~~e~---~~~~~~i~v-~---------~~~l~~----~~-----~~~~~~~~~~fd~~~ 329 (517) +|-+..|.-.+-.| +..-..+-.+ |.-.+|||- + +.+|+. .. +...+. -.|+ T Consensus 252 isyLhkAiKp~NQL-km~EDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~kNklvYDa~TGe-----vrdd 325 (524) T protein:vir:98 252 IGYLHRAVKPANQL-RLLEDAMVIYRITRAPERRVFYIDVGQMGGNKATQYVNNIAQGLKNRVVYDARTGT-----VKNQ 325 (524) T ss_pred eeehhHhhHhHHhh-HHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEeeccCce-----eecc Confidence 34454444443333 2333333333 455567763 1 111111 00 111111 1234 Q ss_pred ceeeeecC------CCCCCc--ceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCC--ccchHHHHHHHHHHHH Q lcl|Aclame:pro 330 NVYKSIRM------GTDEEF--VKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGR--SMKTATEIVSENDLTY 399 (517) Q Consensus 330 ~~y~~~~~------~~~~~~--v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~--~~~TAtei~a~~~~~~ 399 (517) +.++++.- -+++.| |+++..- .--.-.+-++-+.+.+....+.+.+-+..+++ ...-++||.-..-... T Consensus 326 rk~msMlEDyWLpRReGgrgTEItTLpgg-qnlgem~DV~YF~kkLy~aLnVP~sRl~~~~~~f~~Gr~~EItRDEiKF~ 404 (524) T protein:vir:98 326 QNNLSMTEDYWLMRRDGKAITEVSTLPGG-QNFSDMDDIKWFNRKLYEALRVPLSRMPRDDGGMQIGGGGEITRDELKFS 404 (524) T ss_pred ccccchhhhhcccccCCCCccceeecccc-CCcChHHHHHHHHHHHHHHhCCCceeccCCCCccccccccchhHHHHHHH Confidence 44444321 133333 4444322 21223344555666777777777777754322 2233567766665555 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCC--ccceEEEeCCCccCCHHHHHHHHHHHH-----hc---C-CC Q lcl|Aclame:pro 400 RTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPS--AEHIGVDFDDGVFQDRSALLRFYGQAK-----TF---G-FI 468 (517) Q Consensus 400 ~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~--~~~v~i~f~d~i~~d~~~~~~~~~~~~-----~~---G-~~ 468 (517) .-+.+++..|..-+.++++.=|-|- +.+....+. ...|.++|...---.+..+++.+.+-. .. | .. T Consensus 405 KFI~rLR~rFs~lf~~~L~~qLilK---giit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~ 481 (524) T protein:vir:98 405 KFIRTLQIQFSPVLSDPLKTNLIAK---KIITEDEWEENVSKISFVFQQDSYYAEVKDIEILERRLNLMSQVEGVVGKYV 481 (524) T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh---cCCCHHHHHHHhhcceEEEeecchHHHHHHHHHHHHHHHHHHHhcccccccc Confidence 6777778888888888777655332 122222111 223677776554444444444332211 11 2 58 Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 469 PTVEAIQRIFKVPKKTAEQWLEEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 469 S~~~~l~~~~~~~eeea~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) |.+...++...+||+|.+++...|++|....--... .-++| T Consensus 482 s~dyi~k~ILr~tDeei~~~~k~I~~E~k~~~~~~p--------~~e~~ 522 (524) T protein:vir:98 482 SHKYIMKEILRMSDEDIDEQAKLIEEESKEERFKNP--------EAEEE 522 (524) T ss_pred chHHHHHHHhccCHHHHHHHHHHHHHHHhCCCCcCC--------ccccc Confidence 888877778899999999999999888643211100 01111 No 259 >protein:vir:99452 Length: 651 # NCBI annotation: hypothetical protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:1595 # MgeName: BJ1 # Cross-refs: genbank:acc:YP_919077;genbank:gi:119757035;genbank:GeneID:4606105 Probab=69.62 E-value=0.22 Score=24.19 Aligned_cols=439 Identities=8% Similarity=0.004 Sum_probs=149.7 Q ss_pred Cc--hHHHHHHHHHHHH---HHhhccc--ch----hhhccccCcCCHHHHHHHHHHHHHhcCCCcccc-cc---cccCc- Q lcl|Aclame:pro 1 MK--VIQRIKNFFKRGG---YALSGQT--LK----SINDHEKINIDPNELARIERNLRQYEGDYPQVE-YI---NSQGK- 64 (517) Q Consensus 1 m~--~~~~ik~~~~~~~---~~~~~~~--~~----~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~-~~---~~~~~- 64 (517) +. -...++++.+... .++.+.. +- .+.-+.++.-++....+++.-+.++.+..+.+. .. +.+.. T Consensus 46 ~p~~~~~~L~~~~e~~~~~~~~i~~~~~~iag~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~n~~~t~ 125 (651) T protein:vir:99 46 NPPYNPDRLAAFLELNETLATGIRKKSRYEVGFGFDLVPAQGVDGDDASDAQREVARNFWRGRSSRWQTGPNQAKTPATP 125 (651) T ss_pred CCCCCHHHHHHHHhcChHHHHHHHHHhhhhhccCceeeecccCCCCccchHHHHHHHHHhhccchhhcccccccCCCCCH Confidence 11 1333444444111 1111100 00 000111222233343334332222222212111 00 00000 Q ss_pred --cccc---cccccChH--HHHHHHHhhhh--cCCcc-eeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHH Q lcl|Aclame:pro 65 --IQER---DYMTLNLR--KLSADVLSGLV--FNEQC-EVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLE 134 (517) Q Consensus 65 --~~~~---~~~~ln~~--~~i~~~~A~ll--~~e~~-~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~ 134 (517) ..++ .++....+ ..|....+..+ ...++ .+.+.. .... ........+..-.........+..++ T Consensus 126 ~~i~~~~~~Dle~tGna~ieiIrn~~g~pv~L~~lp~~~~Rv~~-~~~~----~~~~~~~ll~~~pn~~~~~~~~~~~~- 199 (651) T protein:vir:99 126 ERVKELARQDYHGVGWLALEMLTDIEGRPVGLAYVPARTVRVRR-PQNR----FDQPRHPEEGRYVDGDVADIASRGYV- 199 (651) T ss_pred HHHHHHHHHHHHHHhhHhhhhhhcCccchhhhhhcChhheeeec-cccc----ccchhhhhhhcccccccchhHHHHHH- Confidence 0000 00000000 11111111000 00011 111100 0000 00001111111000000111111222 Q ss_pred HHHhhCCEEEEEEEeC-Cee-EEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEE Q lcl|Aclame:pro 135 PTFALGGLTVRPYVDN-GEI-EFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYV 212 (517) Q Consensus 135 ~a~~~G~~~~k~~~d~-g~~-~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~ 212 (517) +....+..|+..+-+. +.+ .+....++.+.++...+....... .. ..... +.|. T Consensus 200 q~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~-----~~---~~~~~----------------g~~~ 255 (651) T protein:vir:99 200 QIRNGNRRYFGEAGDRYRGQEVVIDESGDEPTIRYREDEESEREP-----IF---VDRET----------------GDVT 255 (651) T ss_pred HHHhcCcceEEEeeccccceeeeeccCCcceeEEeccCcceeeee-----ec---cccee----------------eeEE Confidence 2333466677766442 222 223344444444322221110000 00 00000 0000 Q ss_pred EEEEEeecCCccccCcccccccccCCCCcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHH Q lcl|Aclame:pro 213 ITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQF 292 (517) Q Consensus 213 I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~ 292 (517) ..... +. . .++ . + -++|||.+.+ .+.++|+|.+..+...+... .....+ T Consensus 256 ------~~~~~---~~-~---~~~----~-------~--eViHir~~~~----~~g~~G~spl~~a~~~i~~a-~~a~~~ 304 (651) T protein:vir:99 256 ------TGDAN---GL-E---NRP----A-------N--ELIFIPNPSI----LEDDYGVPDWVSAIRTISAD-EAAKDY 304 (651) T ss_pred ------EcCCC---ce-e---Eec----c-------c--ceEEecCCCC----CCCcccccHHHHHHHHHHHH-HHHHHH Confidence 00000 00 0 000 0 1 1456664421 24468999999888877544 444444 Q ss_pred H-HHHHhc-cceee--cchHHhccCCCCcccccCccCC----cccc-eeeeecCC----CCCCcceEEeccc---ChHHH Q lcl|Aclame:pro 293 W-WEIKMG-QRTVF--VSDVMLRTVPDESGMPPPQVFD----PDVN-VYKSIRMG----TDEEFVKDVTHDI---RTEQY 356 (517) Q Consensus 293 ~-~e~~~~-~~~i~--v~~~~l~~~~~~~~~~~~~~fd----~~~~-~y~~~~~~----~~~~~v~~~~~di---r~e~~ 356 (517) . +-|+.| .+..+ +|...+... ........|. ...+ ++....+. .-+.+++....++ ...++ T Consensus 305 ~~~~f~NG~~p~gil~~~~~~ls~e---~~~~lr~~~~~~~~nagk~~vL~~~~~~~~~~~~~g~~~~pls~~~~~D~qf 381 (651) T protein:vir:99 305 NRDFFDNDTIPRMVIKVTGGELSEE---SKRDLRQMLNGLREESHRAVVLEVEKFQSQLDEDVEIELEPMGQGISEEMDF 381 (651) T ss_pred HHHHHhccCCCceEEEecCCCCCHH---HHHHHHHHHHHHhccCCceEEeecccccccccccCCceEEEcCcCchhhHHH Confidence 4 445654 33333 332221110 0000001110 0000 01110000 0122444444332 24567 Q ss_pred HHHHHHHHHHHHHHhCCCccccccCCCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-CCC Q lcl|Aclame:pro 357 KEAINQALRTLEMELKLSVGTFSFDGRSM-KTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFG-GEI 434 (517) Q Consensus 357 ~~~l~~~l~~i~~~~g~s~~~~~~~~~~~-~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~-~~~ 434 (517) .+..+...+.|+...|++|..+|+.+++. .++.+.. ..-...++.-+.+.++.+|... ++. ... T Consensus 382 le~r~~~~~eIa~afgVPp~~lG~~~~~~~sn~E~~~--~~f~~~tL~P~~~~ie~eln~k------------Ll~~~e~ 447 (651) T protein:vir:99 382 RQFREKNEHEIAKVLEVPPVKIGVTDSANRSNSDQQD--KDFALEVIQPEQHTFAEWLYQI------------IHQQALG 447 (651) T ss_pred HHHHHHHHHHHHHHhCCCHHHhccCCCCCcccHHHHH--HHHHHHHHHHHHHHHHHHHHHh------------hcCcccc Confidence 77777778889999999999998765433 2222221 1111122222333333332221 111 111 Q ss_pred CCccceEEEeCC--CccCCHHHHHHHHHHHHhcCCCCHHHHHHhh--CCCCHHHHHHHHHHHHHhcc-cc----CCCCCc Q lcl|Aclame:pro 435 PSAEHIGVDFDD--GVFQDRSALLRFYGQAKTFGFIPTVEAIQRI--FKVPKKTAEQWLEEIRKDQI-EL----DPVTIS 505 (517) Q Consensus 435 ~~~~~v~i~f~d--~i~~d~~~~~~~~~~~~~~G~~S~~~~l~~~--~~~~eeea~~el~~i~~E~~-~~----~~~~~~ 505 (517) .....+.+.|+. -+..|..+.++....++++|+|+..+++..+ .++.++....-+..++...+ ++ +..... T Consensus 448 ~~~~~i~~ef~~~~llr~D~~~~~e~~~~~i~~G~~T~NE~R~~lglppi~~~~gd~~l~~~~~~~~g~~~~gge~~~~~ 527 (651) T protein:vir:99 448 VTDWTIEYELRGADQPKQEAQLAEQRVRAMRLAGVGLVDEAREELGLDPLGEPYGEMTLSEFEAEVAGDVAGGGETEAVH 527 (651) T ss_pred ccCceEEEEeccchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCccccccccccccccccccccCCCCcccc Confidence 223445556654 4456888888888899999999999976644 13333333333322211110 00 001111 Q ss_pred cccCCCCCCCCC Q lcl|Aclame:pro 506 QRAQKRMFGDEE 517 (517) Q Consensus 506 ~~~~~~~~G~ee 517 (517) +.+.+...|+.| T Consensus 528 ~~~~~~~~~~~e 539 (651) T protein:vir:99 528 EPPEENKIGERE 539 (651) T ss_pred cCccccccccch Confidence 112222233444 No 260 >protein:vir:5839 Length: 533 # NCBI annotation: similar to portal vertex protein of head # Family: family:all:1036 # MgeID: mge:123 # MgeName: RM 378 # Cross-refs: genbank:acc:NP_835625;genbank:gi:30044028 Probab=68.11 E-value=0.24 Score=23.96 Aligned_cols=401 Identities=12% Similarity=0.131 Sum_probs=164.5 Q ss_pred CchHHHHH-HHHHHHHHHhhcccchhhhc------cccCcCCHHHHHHHHHHHHHhcCCCcccccccccCcccccccccc Q lcl|Aclame:pro 1 MKVIQRIK-NFFKRGGYALSGQTLKSIND------HEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTL 73 (517) Q Consensus 1 m~~~~~ik-~~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~l 73 (517) |+=...+. --.-.+...+.......... +.. ..-.....-|++++.+....| . T Consensus 20 ~~~~~~~~~p~~~dG~s~i~~~~~~~~~~~~~~~~~~g-g~~~n~~eLI~~YR~ma~~~p-E------------------ 79 (533) T protein:vir:58 20 LSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYG-GIEFNRFFLYDMYDRMDYTDP-L------------------ 79 (533) T ss_pred hchhhcccCccCCCCCccccCCCCcchhhhhhhhhhhc-cccccHHHHHHHHHHhhccCc-c------------------ Confidence 11111110 00011111111100000000 000 000012234455555532221 1 Q ss_pred ChHHHHHHHHhhhhcC---------CcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCCEEE Q lcl|Aclame:pro 74 NLRKLSADVLSGLVFN---------EQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTV 144 (517) Q Consensus 74 n~~~~i~~~~A~ll~~---------e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~~~~~a~~~G~~~~ 144 (517) |..--+.+++ .++++.+++... .+...+.|.+++ +|.++..+.+..+.+.|..++ T Consensus 80 ------Vd~AideIvneaiv~d~~~~pV~v~l~~~e~-------s~~iK~kI~~ll---df~~~~~~~fR~WYVDGriy~ 143 (533) T protein:vir:58 80 ------ISTVLDIIADECTIPNENGNIVDVVTKDIEL-------AKAILSYLDYVI---NIEKNAYPIIRNMIKYGDMFL 143 (533) T ss_pred ------hhhHHHhhhceeeEecCCCceeEeecccccc-------cHHHHHHHHHHh---cchhhhhHHHHhhhhcceeEE Confidence 1111112222 233343333221 122335566655 599999999999999999999 Q ss_pred EEEEeC--Cee-EEEEEcCCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecC Q lcl|Aclame:pro 145 RPYVDN--GEI-EFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSD 221 (517) Q Consensus 145 k~~~d~--g~~-~i~~v~a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~ 221 (517) |...++ +++ .+.+++|-++=++. + .. . .. |++.+ |..+.+. T Consensus 144 Hkiik~~k~GI~elr~lDPr~i~~vr-~-------------~~--t-~~------eyyvy-------------~~~~~~~ 187 (533) T protein:vir:58 144 HILEKGSDGTIEKFQVVSPYIFSKRY-N-------------PE--T-DT------WYYVI-------------TDVYRNV 187 (533) T ss_pred EeccCCcccchhhheecCCeeeEEEE-e-------------ec--c-ce------EEEee-------------ccccccc Confidence 986543 233 56777777765531 0 00 0 11 11111 1111111 Q ss_pred CccccCcccccccccCCCCcceEE-cCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhcc Q lcl|Aclame:pro 222 NEGEIGKRIPLEELYEGMQEKTYI-QGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQ 300 (517) Q Consensus 222 ~~~~lG~~v~l~~~~~~l~~~~~~-~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~ 300 (517) .+...+..+|-.. + ++. .|+ .+..+++++|-+..|+-..-.| +..-..+-.+|.++ T Consensus 188 ~s~~~~~kI~~da----I---~y~~SGl---------------~d~~~~~iisyLhkAiKp~NQL-kmiEDAlVIYRisR 244 (533) T protein:vir:58 188 VSGYFNEDIPEED----V---IHFSHKI---------------DTNFFPYGRSYLESARAIWNQL-RLMEDALMLYRVVR 244 (533) T ss_pred ccCccccccchhh----e---eeeeecc---------------ccCCCCceehhhhHHHHHHHHH-HHHHHHHHHHhhcC Confidence 1111122222110 0 111 121 2334677888888886555544 23333344555554 Q ss_pred ---ceeec-c---------hHHhcc---------CCCCcccccCccCCcccceee---eec------CCCCC--CcceEE Q lcl|Aclame:pro 301 ---RTVFV-S---------DVMLRT---------VPDESGMPPPQVFDPDVNVYK---SIR------MGTDE--EFVKDV 347 (517) Q Consensus 301 ---~~i~v-~---------~~~l~~---------~~~~~~~~~~~~fd~~~~~y~---~~~------~~~~~--~~v~~~ 347 (517) +|||- + +.+++. .-+...+. . .+.+.++ ++. --+++ .-|+++ T Consensus 245 APeRRvFYIDVGNlpk~KAeqYl~~im~k~kNklvYDa~TGe----v-~ddrk~m~~~sMlEDyWLpRReGgrgTEI~TL 319 (533) T protein:vir:58 245 SVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQ----F-LGIDNYFSIESILKDYFIPRRGDRRAVEIDIL 319 (533) T ss_pred ChhheEEEEeecCCCccCHHHHHHHHHHhcccceEEeccCCe----E-eeccchhhhhhhHhhhcccccCCCccceeeec Confidence 45543 2 111111 00111111 1 1223333 111 01233 335555 Q ss_pred ecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh Q lcl|Aclame:pro 348 THDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTY 427 (517) Q Consensus 348 ~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~ 427 (517) .- -.. .-.+.++-+.+.+....+.+..-++.+++. .-++||.-..- +-++....++..+.+++...|.+ T Consensus 320 pG-g~l-gemeDV~YF~kkLy~ALnVP~sRl~~e~~f-gr~~eItRDEi----KF~KFI~rLR~rF~~ll~~qLil---- 388 (533) T protein:vir:58 320 QG-SKV-DLAEDVEYMLNRLISALKVPKAFIGYEGDV-NAKNTLATQDI----KFNNTIKRIQGFFVEELERMVRM---- 388 (533) T ss_pred CC-CCC-CcHHHHHHHHHHHHHHhCCCeeecCCCCCC-ccchhhhHHHH----HHHHHHHHHHHHHHHHHhccccc---- Confidence 43 232 344667777788888889988888766543 34567754443 33344444444455555443321 Q ss_pred hccCCCCCCccceEEEeCCCccCCHHHHHHHHHHH-----HhcCCCCHHHHHHhhCCCCHHHHHHHHHHHHHhccccC-- Q lcl|Aclame:pro 428 KLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQA-----KTFGFIPTVEAIQRIFKVPKKTAEQWLEEIRKDQIELD-- 500 (517) Q Consensus 428 ~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~-----~~~G~~S~~~~l~~~~~~~eeea~~el~~i~~E~~~~~-- 500 (517) .+.. ...+..++|...---.+..+.+.+.+- ...+.+++....++...+|||.. ++.+.|++|..+.- T Consensus 389 --k~ii--t~eew~~~f~~Dn~f~ElKe~Eil~~Ri~~l~~~dpyvgk~yi~k~ILr~tdei~-~q~e~ie~E~~~~~~~ 463 (533) T protein:vir:58 389 --NKEF--ADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLK-PQEEVAEAAGGGGLFD 463 (533) T ss_pred --ccCc--chhheeeeeeccchHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHhcCChhhh-HHHHHHHHhhcCCCCC Confidence 2222 233455666544333334333333211 13367787654456668998643 34456776643211 Q ss_pred ---------CCCCc-c--ccCCCCCCCCC Q lcl|Aclame:pro 501 ---------PVTIS-Q--RAQKRMFGDEE 517 (517) Q Consensus 501 ---------~~~~~-~--~~~~~~~G~ee 517 (517) |..+. + +|.+..-|.+| T Consensus 464 ~~~~~~e~~~~~~~~~~~~p~~~~~~~~~ 492 (533) T protein:vir:58 464 TGGFGEETTPADFLGERGSPIESPRGRTE 492 (533) T ss_pred CCCcccccCCcccCccccCcccCCCChhh Confidence 10000 0 01111111111 No 261 >protein:vir:4089 Length: 395 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:86 # MgeName: 2389 # Cross-refs: genbank:acc:NP_510984;swissprot:trembl:q8w606;genbank:gi:17488506;uniprot:Q8W606;genbank:GeneID:1260314 Probab=65.71 E-value=0.28 Score=23.62 Aligned_cols=372 Identities=11% Similarity=0.053 Sum_probs=124.9 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccChHHHHH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLRKLSA 80 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~~~i~ 80 (517) ||+|+++++|+.+....... . .|..|..+. .... ...-+..--...-..|| T Consensus 1 Mg~~~~~~~~~~~~~~~~~~---~-------------------~~~~~~~~~--~~~~-----~~~l~~~~v~~~v~~Ia 51 (395) T protein:vir:40 1 MGFKSWVSGFFNEEQRTLNL---T-------------------DTVWCSIPS--EKLK-----ELSIKKWAIDSCANKIA 51 (395) T ss_pred CchHHHHHhhhccccccccc---c-------------------cchhhcccc--ccch-----hhhhhhHHHHHHHHHHH Confidence 99999999999642211110 0 011111000 0000 00000000011224555 Q ss_pred HHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHhhhhHHHHHHH-HHHHHHhhCCEEEEEEEeCCeeEEEEEc Q lcl|Aclame:pro 81 DVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSD-YLEPTFALGGLTVRPYVDNGEIEFSWAL 159 (517) Q Consensus 81 ~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~f~~~~~~-~~~~a~~~G~~~~k~~~d~g~~~i~~v~ 159 (517) +..|.+= +.+-... ......+...|+.-=...-=...+.+ .+.+.+-.|.+++.+ ..++. .. T Consensus 52 ~~ia~~p------~~~~~~~-----~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~~--~~~~~----~~ 114 (395) T protein:vir:40 52 NTLSCAE------VLTYEKG-----EEVRKKNWYMFNVEANQNQNATEFWKKAIYKLVYDNEALIFM--QDEYI----YV 114 (395) T ss_pred HHHhhCc------eeeccCC-----ccccchHHHHHHhcCCCCCCHHHHHHHHHHHHhhcCceEEEE--ecCce----ee Confidence 5555432 2221100 00111111112110000000122223 344444456655433 22221 11 Q ss_pred CCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccccCCC Q lcl|Aclame:pro 160 ANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEGM 239 (517) Q Consensus 160 a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l 239 (517) ++.+.+... ......|+.+.. . .|.+. ..++ T Consensus 115 ~~~~~~~~~------------------~~~~~~~~~v~~---~-------~~~~~-------------~~~~-------- 145 (395) T protein:vir:40 115 ADSFTKNDK------------------SLYENTYTEVTL---K-------DLTLK-------------KEFK-------- 145 (395) T ss_pred cCCcccccc------------------ccccceeeeeee---c-------Cceee-------------eeec-------- Confidence 111111000 000001110000 0 00000 0000 Q ss_pred CcceEEcCCCcceEEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHH-HhccceeecchHHhccCCCCcc Q lcl|Aclame:pro 240 QEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEI-KMGQRTVFVSDVMLRTVPDESG 318 (517) Q Consensus 240 ~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~-~~~~~~i~v~~~~l~~~~~~~~ 318 (517) +.+ +.||+.+ + ...+|++.+.+..+..++ +...+.+ ..+..+-.+- ++....... T Consensus 146 ~~e----------vih~r~~--~--~~~~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~l~---~~~~~~~~~ 201 (395) T protein:vir:40 146 ESE----------VLHLTLN--N--ESIKSIIDGFYLLYGDLL-------TAAVNKYKKLNSRKIIVK---LKAMFGQTP 201 (395) T ss_pred ccc----------EEEeecC--C--CCccccchhHHHHHHHHH-------HHHHHHHHhcCCCCceEE---EecccCCCH Confidence 001 2344321 1 112333333332222222 2222222 2222222110 111000000 Q ss_pred ---cccCccCCcccceeeeecCC-------CCCCcceEEecccChHHHHHHH---HHHHHHHHHHhCCCccccccCCCcc Q lcl|Aclame:pro 319 ---MPPPQVFDPDVNVYKSIRMG-------TDEEFVKDVTHDIRTEQYKEAI---NQALRTLEMELKLSVGTFSFDGRSM 385 (517) Q Consensus 319 ---~~~~~~fd~~~~~y~~~~~~-------~~~~~v~~~~~dir~e~~~~~l---~~~l~~i~~~~g~s~~~~~~~~~~~ 385 (517) ......|. +.|.+.... +++..++.++......+..+.- +.+.++|+..-|++|..++-. . T Consensus 202 ~~~~~~~~~~~---~~~~~~~~~~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~~~~Ia~~fgVPp~~l~~~---~ 275 (395) T protein:vir:40 202 EAEEKLRLMLS---ERMKKFLAEGDSALPVEDGMEIDELAGDSKIAESRDIKKMIDDVFEMVANSFNIPLGLAKGD---T 275 (395) T ss_pred HHHHHHHHHHH---HHHHHhhccCCceeecCCCceEEeccCChhhhhHHHHHHHHHHHHHHHHHHhCCCHHHhcCC---C Confidence 00000010 011111111 1222344455444444444322 334567899999999988521 1 Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC-CCCCccceEEEeCCCccCCHHHHHHHHHHHHh Q lcl|Aclame:pro 386 KTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGG-EIPSAEHIGVDFDDGVFQDRSALLRFYGQAKT 464 (517) Q Consensus 386 ~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~-~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~ 464 (517) .+..+. ....++.+|..++..|..-.+. .++.. .......+.++++.-+..|..+.++...+++. T Consensus 276 sn~e~~-------------~~~f~~~~L~P~~~~ie~~l~~-kLl~~~~~~~g~~i~fd~~~ll~~d~~~~~~~~~~~~~ 341 (395) T protein:vir:40 276 VGLSEQ-------------VNSFLMFSINPIAEMFTDEGNR-KFYGRDSVLERTYMKLDTTRIKVQDIQEIASSMDVLFH 341 (395) T ss_pred cCHHHH-------------HHHHHHHHHHHHHHHHHHHHHH-hcCChhhhcCCceEEEechhhhccCHHHHHHHHHHHHh Confidence 111111 1223334444444443322211 12211 11123557777777778888898888899999 Q ss_pred cCCCCHHHHHHhhCCCCH---HHHHHHHHHHHHhccccCCCCCccccCCCCCCC-CC Q lcl|Aclame:pro 465 FGFIPTVEAIQRIFKVPK---KTAEQWLEEIRKDQIELDPVTISQRAQKRMFGD-EE 517 (517) Q Consensus 465 ~G~~S~~~~l~~~~~~~e---eea~~el~~i~~E~~~~~~~~~~~~~~~~~~G~-ee 517 (517) +|+|+.-+++... |+.. .+.++-.-. . + ..|.........|..++ ++ T Consensus 342 ~G~~t~NE~R~~~-g~~pi~~~~gD~~~~~--~-n--~~~~~~~~~~~kgge~~~~~ 392 (395) T protein:vir:40 342 IGVNTIDDNLRMI-GREPVMSPETQERFVT--K-N--YAPLGENEEDLKGGDINENK 392 (395) T ss_pred CCCCCHHHHHHHh-CCCCCCCCCCceeeec--c-c--cccccccccccCCCCCCCCc Confidence 9999999976543 5432 222211110 0 0 01111111111111111 11 No 262 >protein:vir:9641 Length: 395 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:173 # MgeName: 315.1 # Cross-refs: genbank:acc:NP_795403;genbank:gi:28876176;genbank:GeneID:1257709 Probab=54.81 E-value=0.49 Score=22.26 Aligned_cols=371 Identities=11% Similarity=0.061 Sum_probs=116.2 Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCccccccccccChHHHHH Q lcl|Aclame:pro 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLRKLSA 80 (517) Q Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~ln~~~~i~ 80 (517) ||+|++++..-. ..++... +. +.+.. .+.+ ... +..... .--..|| T Consensus 1 Mgl~d~~~~~~~-----------~~~~~~~----~~---~~~~~---~~~~----~~l-------~~~~v~--~~i~~Ia 46 (395) T protein:vir:96 1 MGILDFFSFKKS-----------GTLSDDD----SG---STTSE---KLTN----VVL-------KEDALY--KCVNYLA 46 (395) T ss_pred CcchhhhcCCCC-----------ccccccc----cc---cchhh---hcch----hhh-------hhHHHH--HHHHHHH Confidence 999977643110 0000000 00 00000 0000 000 000000 0113444 Q ss_pred HHHhhhhcCCcceeEecCcccccccccchhHHHHHHHHHHh-hhhHHHHHHHHHHHHHhhCCEEEEEEEeCCeeEEEEEc Q lcl|Aclame:pro 81 DVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQ-HNKFIKNLSDYLEPTFALGGLTVRPYVDNGEIEFSWAL 159 (517) Q Consensus 81 ~~~A~ll~~e~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~-~n~f~~~~~~~~~~a~~~G~~~~k~~~d~g~~~i~~v~ 159 (517) +..|++ |..+.-.+... .....+...|+.--. ......-...++...+-.|.+++.+..+.+. ++ T Consensus 47 ~~ia~l----p~~v~~~~~~~-----~~~~~~~~lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~~~~~~~~~-----~~ 112 (395) T protein:vir:96 47 RIISKS----TFRIKAPEKLT-----ENQKDWLYWINTKANPNQSASQFWVEVVQKLLVDGETLIFVIPGKGI-----YV 112 (395) T ss_pred Hhhccc----eeEEEeCCccc-----cccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEcCCce-----ec Confidence 444443 22211111000 000111111110000 0011122223444555567666655444321 11 Q ss_pred CCeEEEEEEcCCceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccccCCC Q lcl|Aclame:pro 160 ANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEGM 239 (517) Q Consensus 160 a~~~~P~~~~~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l 239 (517) ++.+ +... .+ . .. .|..+.. ..|.+.. .++- T Consensus 113 ~~~~-~~~~-------~~--------~--~~-~~~~v~~----------~~~~~~~-------------~~~~------- 143 (395) T protein:vir:96 113 ADAF-TQDK-------KL--------S--GN-KFKVSRV----------QGQTYEK-------------IFTF------- 143 (395) T ss_pred CCcc-cccc-------cc--------c--cc-eeeeeee----------ccceeee-------------Eecc------- Confidence 1211 1000 00 0 00 0100000 0011110 0000 Q ss_pred CcceEEcCCCcceEEEecCCccccccCCCCCCcc---hhhhhHHHHHHHHHHHH--HHH-HHHHhccceeecchHHhccC Q lcl|Aclame:pro 240 QEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLG---ITDNSVSTLKKINDTYD--QFW-WEIKMGQRTVFVSDVMLRTV 313 (517) Q Consensus 240 ~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S---~~~~~~~lid~lD~~~s--~~~-~e~~~~~~~i~v~~~~l~~~ 313 (517) .+ +.|||.+.+. ..+.+-+ .+..+..+.-++...-+ ++. +-+..+-....+ +... T Consensus 144 -~d----------vih~k~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 204 (395) T protein:vir:96 144 -DQ----------VIYLKNDNSD----LMLKVESLWEEYGELLGHVINNQKIANQIRFTMTPPKDKVRERAQ----ENSD 204 (395) T ss_pred -Cc----------eEEecccCCc----cccccccccchHHHHHHHHHHHHHHHHHHHHHhhhccccccccee----eccC Confidence 00 2344432111 1111222 22333333322221111 121 112222111111 1111 Q ss_pred CCCcccccCccCCcccceeeeecCC-------CCCCcceEEecccChH------HHHHHHHHHHHHHHHHhCCCcccccc Q lcl|Aclame:pro 314 PDESGMPPPQVFDPDVNVYKSIRMG-------TDEEFVKDVTHDIRTE------QYKEAINQALRTLEMELKLSVGTFSF 380 (517) Q Consensus 314 ~~~~~~~~~~~fd~~~~~y~~~~~~-------~~~~~v~~~~~dir~e------~~~~~l~~~l~~i~~~~g~s~~~~~~ 380 (517) .+.........+ .+.+...+.+ +++..++.++..-... ...+..+...++|+..-|++|..++- T Consensus 205 ~~~~~~~~~~~~---~~~~~~~~~~~~~v~~l~~g~~~~~l~~~~~d~q~~e~~~~~~~~~~~~~eIa~~fgVPp~~l~~ 281 (395) T protein:vir:96 205 GGRQPKSDKDFF---KRTIEKIRTESVVGIPVTANTNYEEYGSKNTGSVKSYVDDIKKLKDQYMAEFAEMLGIPISLLHG 281 (395) T ss_pred chhhHHHHHHHH---HHHHHHhhcCCcceEEccCCceeEecccChhhhhhhhHHHHHHHHHHHHHHHHHHhCCCHHHhcC Confidence 111111000000 0011111111 1121222233322222 23333445567899999999998852 Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHH Q lcl|Aclame:pro 381 DGRSMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYG 460 (517) Q Consensus 381 ~~~~~~TAtei~a~~~~~~~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~ 460 (517) + ..++.+ . ....++.+|.-++..|....+. .++..... ...+.++|+.-+..|..+.++... T Consensus 282 ~---~sn~e~---~----------~~~f~~~~L~P~~~~ie~~l~~-~Ll~~~e~-~~~~~f~~~~l~~~d~~~~~~~~~ 343 (395) T protein:vir:96 282 D---IADNQK---N----------YELLLEGPIESLITNIVDGLEY-AIFDKSET-LEGSFIKVTGLKNYDLFSISSQAD 343 (395) T ss_pred C---CccHHH---H----------HHHHHHHHHHHHHHHHHHHHHh-hcCChhhh-cCceeEeecchhccCHHHHHHHHH Confidence 1 111111 1 1122333333333333221111 12211110 112457787878889999999999 Q ss_pred HHHhcCCCCHHHHHHhhCCCC---HHHHHHHHHHHHHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 461 QAKTFGFIPTVEAIQRIFKVP---KKTAEQWLEEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 461 ~~~~~G~~S~~~~l~~~~~~~---eeea~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) +++.+|+|+.-+++... |+. +.+.++-... .+. .| .++. +...+++.| T Consensus 344 ~~~~~G~~T~NE~R~~~-gl~pi~~~~gD~~~~~---~N~--~~--~~~~-gge~~~~~~ 394 (395) T protein:vir:96 344 KLISSGFVFIDEVREEI-GLPELPDGLGKVLYMT---KNY--ES--VLER-GGEVDEEVE 394 (395) T ss_pred HHHhCCCcCHHHHHHHh-CCCCCCCCCCceeeec---ccc--ee--chhc-cCCCCCCCC Confidence 99999999998866543 443 2222221100 000 00 0110 000111111 No 263 >protein:vir:98853 Length: 219 # NCBI annotation: hypothetical protein # Family: family:all:196 # MgeID: mge:1495 # MgeName: F108 # Cross-refs: genbank:acc:YP_654729;genbank:gi:109302914;genbank:GeneID:4156058 Probab=51.12 E-value=0.59 Score=21.84 Aligned_cols=207 Identities=10% Similarity=0.036 Sum_probs=86.3 Q ss_pred EEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccccCCCCcceEEcCCCcceEEEecCCccc Q lcl|Aclame:pro 183 TKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFN 262 (517) Q Consensus 183 ~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N 262 (517) ...-.++..+|+ +.......-|..+.+. + +. +.|||.+.++ T Consensus 1 ~r~~~dg~~~y~-----------------------~~~~~~~~~g~~~~~~------~--------~e--ilH~r~~~~~ 41 (219) T protein:vir:98 1 MRVCKDGNYKYL-----------------------MKKSLYDTKSEIYEYN------K--------ND--VIFIKLYDPM 41 (219) T ss_pred CceeecCeEEEE-----------------------EecceecCCceeEEec------c--------cc--EEEecCCCCC Confidence 001111111111 0000000001111110 0 11 3456654221 Q ss_pred cccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHH-Hhc-cceee--cchHHhccCCCCcccccCccCCc------cccee Q lcl|Aclame:pro 263 NINPHSPLGLGITDNSVSTLKKINDTYDQFWWEI-KMG-QRTVF--VSDVMLRTVPDESGMPPPQVFDP------DVNVY 332 (517) Q Consensus 263 ~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~-~~~-~~~i~--v~~~~l~~~~~~~~~~~~~~fd~------~~~~y 332 (517) +.-+|+|.+..+...+. ++....++...+ +.| .+.-+ +|...|.. .+-......|.. ...+. T Consensus 42 ----~~~~Glspi~~a~~~i~-~~~aa~~~~~~~f~Ng~~p~gil~~~~~~l~~---e~~~~~~~~~~~~~g~~n~~~~~ 113 (219) T protein:vir:98 42 ----QQVYGSPDYVGGITSAL-LNSDATIFRRRYYSNGAHMGFILYSTDPDMTE---EMEDEIAERIRDSKGVGNFRSMF 113 (219) T ss_pred ----CCcceecHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCceEEEeCCCCCCH---HHHHHHHHHHHHhcCccccccee Confidence 12359999887776665 345666666554 443 44422 33322211 000000111100 01111 Q ss_pred eeecC-CCCCCcceEEecccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHHHHHHHH-HHHHHHHHHHHHH Q lcl|Aclame:pro 333 KSIRM-GTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVSENDL-TYRTRNDHVYEVE 410 (517) Q Consensus 333 ~~~~~-~~~~~~v~~~~~dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a~~~~-~~~t~~~~~~~~~ 410 (517) ....+ ..++-.++-++......++.+.-+.....|+..-|++|..+|+...+..|-..+...... ...++.-....++ T Consensus 114 l~~~gg~~~G~~~~~~~~~~~d~qfle~rk~~~~eIa~~fgVPp~~lG~~~~~~~~~sn~eq~~~~f~~~tL~P~~~~ie 193 (219) T protein:vir:98 114 VNIAGGHPDGLKVIPIGDTGQKDEFANIKNISAQDVLTSHRFPPGLSGIIPVNTAGLGDPLKIREAYQADEVLPLQEIIA 193 (219) T ss_pred EecCCCCccceeEEEccCCHHHHHHHHHHHhhHHHHHHHhCCCHHHcccccCCCCCccCHHHHHHHHHHHHHHHHHHHHH Confidence 11111 112223444555556677888777778889999999999998654332221111111111 1122222222233 Q ss_pred HHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHH Q lcl|Aclame:pro 411 QFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRS 453 (517) Q Consensus 411 ~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~ 453 (517) .+|.. ++ . -...+.+.|++..+.|.. T Consensus 194 ~~ln~------------~~---~--~~~~~~~~F~~~~~~d~~ 219 (219) T protein:vir:98 194 ESINS------------DY---E--IKSALKVNFKQPEKRDKN 219 (219) T ss_pred HHhhh------------hh---c--CCCccEEeecCcccccCC Confidence 33221 11 1 122367789998888877 No 264 >protein:vir:95254 Length: 488 # NCBI annotation: Phage conserved protein # Family: family:all:2372 # MgeID: mge:1561 # MgeName: Felix 01 # Cross-refs: genbank:acc:NP_944885;genbank:gi:158267601;genbank:GeneID:2744039 Probab=35.16 E-value=1.2 Score=20.06 Aligned_cols=431 Identities=10% Similarity=0.023 Sum_probs=149.9 Q ss_pred cccchhhhccccCcCCHHHHHHHHHH------HHHhcCCCcccccccccCccccccc-cccChHHHHHHHHhhhhcCCcc Q lcl|Aclame:pro 20 GQTLKSINDHEKINIDPNELARIERN------LRQYEGDYPQVEYINSQGKIQERDY-MTLNLRKLSADVLSGLVFNEQC 92 (517) Q Consensus 20 ~~~~~~~~~~~~i~~~~~~~~~i~~~------~~~Y~g~~~~~~~~~~~~~~~~~~~-~~ln~~~~i~~~~A~ll~~e~~ 92 (517) |-..+.+ .=-++|....+|-+- ..+|+..-+.|. ....-..- +.. .-.-+...+.. --.-|.+-.- T Consensus 1 ~~~~~~~----~~gl~p~rl~~i~~~~~~~~~~~~~~~~~~~Lr-~~~~~~ly-~~m~~D~hi~s~l~~-Rk~av~~~~w 73 (488) T protein:vir:95 1 MADITET----QESLPPFRMGEVGSLGLKVKNGRIYEEPRQALR-FPESIKTF-QLMMRDPAVAASVNI-IKMFVRKVNW 73 (488) T ss_pred CCCcccc----CCCCCHHHHHHHHHHhhccccchhhccchhhhc-ccchHHHH-HHHhhChHHHHHHHH-HHHHHhcCCc Confidence 1111111 113455544444321 112221111110 00000000 000 00011122211 1122334333 Q ss_pred eeEecCcccccccccchhHHHHHHHHHHhhhh--HHHHHHHHHHHHHhhCCEEEEEEEeCCee---EEEEEcCCeEE-EE Q lcl|Aclame:pro 93 EVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNK--FIKNLSDYLEPTFALGGLTVRPYVDNGEI---EFSWALANAFY-PL 166 (517) Q Consensus 93 ~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~--f~~~~~~~~~~a~~~G~~~~k~~~d~g~~---~i~~v~a~~~~-P~ 166 (517) .|.-.+... .+.....+.++++.++.+-+ |...+..++ +|...|-.++-..|+.+.. .+.++..+..+ |. T Consensus 74 ~v~p~~~~~---~d~~~~~~a~~v~~~l~~~~~~~~~~i~~~l-da~~~G~s~~Eivw~~~~~~~~~~~~~~~dg~~~~~ 149 (488) T protein:vir:95 74 RFVPPKGKE---QDPKMLERADFFNSLMDDMEHDWADFINSVM-SFCTYGFCVNEKVYKKRQGKKGKYQSKFDDGLIGWA 149 (488) T ss_pred eEecCCCCc---hhHHHHHHHHHHHHHHhccCccHHHHHHHHH-HhhcccceeeeeeeeccccccccccccccCCeeeee Confidence 443222211 12223345688888887643 445555554 7888999999888874321 11122222111 10 Q ss_pred EEcCCceEEEEEEEEEE------EEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccc-cCCC Q lcl|Aclame:pro 167 RSNSNGISEGVMKSVTT------KVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEEL-YEGM 239 (517) Q Consensus 167 ~~~~~~~~~~a~~~~~~------~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~-~~~l 239 (517) -|..+.. ....++.-.+..-+.+.. -.++... +-+ T Consensus 150 ----------~i~~Rpq~~~~~f~~d~d~~l~~~~~~~~~~---------------------------~~~~~~~~~~~- 191 (488) T protein:vir:95 150 ----------KLPIRNQSTLDKWYFDEDFRRVTGVRQNLRN---------------------------VSHIAGAINLG- 191 (488) T ss_pred ----------eeeecCcccccceeeccCCCceeeccccccc---------------------------ccccccccccc- Confidence 0110000 000001000000000000 0000000 000 Q ss_pred CcceEEcCCCcce--EEEecCCccccccCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHH---hccceeecchHHhccCC Q lcl|Aclame:pro 240 QEKTYIQGLSRPL--FNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIK---MGQRTVFVSDVMLRTVP 314 (517) Q Consensus 240 ~~~~~~~g~~~p~--f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~---~~~~~i~v~~~~l~~~~ 314 (517) ....++.-|+ |+.++ .+....+|+|.+.+..|--..--=+..+..|+.-++ .+-+.+..|..+..... T Consensus 192 ---~~~~~~~lP~~kfi~~~----~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~Er~g~g~p~~~~p~~~~~~~~ 264 (488) T protein:vir:95 192 ---ERPLTRKLPRAKFMLFK----YDDEYGNPEGRSPLLNAYVPWKYKVQIEEYEAVGVSRDLVGMPKIGLPPDYLDENA 264 (488) T ss_pred ---cccccccccccceEEEe----ecCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeEeeccCCCCCcc Confidence 0001111121 33332 223467899999998875433222222222222232 34455555443321111 Q ss_pred CCcccccCc-cCC--cc----cceeeeecCCCC----CCc--ceEEecc-cChHHHHHHHHHHHHHHHHHhCCCcc-ccc Q lcl|Aclame:pro 315 DESGMPPPQ-VFD--PD----VNVYKSIRMGTD----EEF--VKDVTHD-IRTEQYKEAINQALRTLEMELKLSVG-TFS 379 (517) Q Consensus 315 ~~~~~~~~~-~fd--~~----~~~y~~~~~~~~----~~~--v~~~~~d-ir~e~~~~~l~~~l~~i~~~~g~s~~-~~~ 379 (517) +........ ... .+ ......+..+.+ ... ++..... -....|.+.++.+=++|+ ++-++.. |.+ T Consensus 265 ~~e~~~l~~a~~~i~~~~~~~~~ag~iiP~g~~~~~k~~~~e~~l~~~~~~~~~~~~~li~~~d~~Is-k~iLGqtLT~~ 343 (488) T protein:vir:95 265 EPEKKAFVQYCKTVVNDMIANDRAGLIWPRYIDPDTKEDIFEFSLVSRQGAKAYDTGSIIDRYSKQIM-MAFMSDVLAMG 343 (488) T ss_pred cHHHHHHHHHHHHHHHHhhccchhheeeccccccccchhhhhhhccccccCCchhHHHHHHHHHHHHH-HHHhccccccc Confidence 100000000 000 00 000000000000 000 0011110 111234454554444443 3334321 222 Q ss_pred cCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHH Q lcl|Aclame:pro 380 FDGRSMKTATEIVSENDLTYRTRNDHVYEVEQFIK-GLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRF 458 (517) Q Consensus 380 ~~~~~~~TAtei~a~~~~~~~t~~~~~~~~~~al~-~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~ 458 (517) .+++|.-...++-. .-...-+..-.+.+...|. +||.-++.+ ++ +. ...-+.+.|+..-.+|..+.++. T Consensus 344 ~~~~Gs~Al~~vh~--ev~~~i~~aDa~~i~~tln~~li~~l~~~----Nf-g~---~~~~P~~~~~~~e~~Dl~~~ae~ 413 (488) T protein:vir:95 344 QSKYGSFSLADSKT--SLLAMSVDILLKQIKNVINRDLVAQTYAL----NM-WD---DEEHVQITYDDIETPDLEAIGSY 413 (488) T ss_pred cCcchhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cC-CC---CCCccEEEecCcChhhHHHHHHH Confidence 22222211111211 1122233344556666664 577766543 21 11 12235677887778887888888 Q ss_pred HHHHHhcCCCCH----HHHHHhhCCCCHHHHHHHHHHHHHhccccCCCCCccccC-----------CCCCCCCC Q lcl|Aclame:pro 459 YGQAKTFGFIPT----VEAIQRIFKVPKKTAEQWLEEIRKDQIELDPVTISQRAQ-----------KRMFGDEE 517 (517) Q Consensus 459 ~~~~~~~G~~S~----~~~l~~~~~~~eeea~~el~~i~~E~~~~~~~~~~~~~~-----------~~~~G~ee 517 (517) +..++.+|+.-. +.++.+.+|+.+.+-.+.+..-...++++........++ +.....++ T Consensus 414 ~~~L~~~G~~i~~~~~~~~i~e~~gip~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 487 (488) T protein:vir:95 414 IQKTVAVGALEVDKELSNKLREHIGLPPADESQPVSEKLSPNSQSRSGDGYKTAGEGTAKTPSAKDPSTANKAN 487 (488) T ss_pred HHHHHhCCCccccHHHHHHHHHHhCCCCCCCCccccccCCCCCCCCCCcccCCCcccCCcccccccchhhhhcc Confidence 999999997543 678999999875432222211110000000000000000 00011111 No 265 >protein:vir:98643 Length: 395 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1601 # MgeName: phi3396 # Cross-refs: genbank:acc:YP_001039921;genbank:gi:126011096;genbank:GeneID:4818479 Probab=33.65 E-value=1.3 Score=19.88 Aligned_cols=366 Identities=10% Similarity=0.013 Sum_probs=117.2 Q ss_pred hhcccchhhhccccCcCCHHHHHHHHHHHHHhcCCCcccccccccCcccccccccc----ChHHHHHHHHhhhhcCCcce Q lcl|Aclame:pro 18 LSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTL----NLRKLSADVLSGLVFNEQCE 93 (517) Q Consensus 18 ~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~l----n~~~~i~~~~A~ll~~e~~~ 93 (517) |++... +.......++. + +.+. .+... ..+..+.. ..-..||+..|++ +.. T Consensus 1 MGlf~~--~~~~~~~~~~~-----~------~~~~--~~~~~------~~~~~~~~~~v~~~I~~ia~~iA~l----p~~ 55 (395) T protein:vir:98 1 MGILDF--FSFKKSGTLSD-----D------DSGS--TTSEK------LTNVVLKEDALYKCVNYLARIISKS----TFR 55 (395) T ss_pred Ccchhh--hcCCCcccccc-----c------ccch--hhhhh------cchhhhhhHHHHHHHHHHHHHHhhC----cee Confidence 222110 10001000000 0 0000 00000 00000111 1114556666653 222 Q ss_pred eEecCcccccccccchhHHHHHHHHHHhhh---hHHHHHHHHHHHHHhhCCEEEEEEEeCCeeEEEEEcCCeEEEEEEcC Q lcl|Aclame:pro 94 VYVSDAKDEEKKDNSFKTAHEFIQHVFQHN---KFIKNLSDYLEPTFALGGLTVRPYVDNGEIEFSWALANAFYPLRSNS 170 (517) Q Consensus 94 i~~~~~~~~~~~~~~~~~~~~~l~~~l~~n---~f~~~~~~~~~~a~~~G~~~~k~~~d~g~~~i~~v~a~~~~P~~~~~ 170 (517) +.-.+.. ......+...|+. .-| ....-.+.++...+-.|.+++.|..+.+. +.|+.+..+.... T Consensus 56 ~~~~~~~-----~~~~~~~~~lL~~--~PN~~~t~~~f~~~~~~~lll~Gnayi~~~~~~~~-----~~~~~~~~~~~~~ 123 (395) T protein:vir:98 56 LKTPEKL-----TENQKDWLYWINT--KANPNQSASQFWVEVIQKLLVDGETLIFVIPGKGI-----YVADSFTQDKKIS 123 (395) T ss_pred EEecCCc-----ccccchHHHHHhh--cCCCCCCHHHHHHHHHHHHhhcCceEEEEEeCCce-----ecCCccccccccc Confidence 2111100 0111122222221 001 11222334455566667777666544321 1122111110000 Q ss_pred CceEEEEEEEEEEEEecCCcEEEEEEEEEeecceeeccceEEEEEEEeecCCccccCcccccccccCCCCcceEEcCCCc Q lcl|Aclame:pro 171 NGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLSR 250 (517) Q Consensus 171 ~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~~~y~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~g~~~ 250 (517) ..+|... .. ..|.+. ..|. +.+ T Consensus 124 -------------------~~~~~~~---~~-------~~~~~~-~~~~--------------------~~e-------- 145 (395) T protein:vir:98 124 -------------------GSQFKVS---RV-------QGQTYE-KTFT--------------------FDQ-------- 145 (395) T ss_pred -------------------Cccccee---ee-------cCceee-eEec--------------------Ccc-------- Confidence 0001000 00 001110 0010 000 Q ss_pred ceEEEecCCccccccCCCCCCcchhhhhHHHHH-HHHHHHH-HHHHHH-HhccceeecchHHhccCCCCcccccCccCCc Q lcl|Aclame:pro 251 PLFNYLKPSGFNNINPHSPLGLGITDNSVSTLK-KINDTYD-QFWWEI-KMGQRTVFVSDVMLRTVPDESGMPPPQVFDP 327 (517) Q Consensus 251 p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid-~lD~~~s-~~~~e~-~~~~~~i~v~~~~l~~~~~~~~~~~~~~fd~ 327 (517) +.|||.+..+. .+++.+.+..+..++. .++.... .-.+-+ ..++.. .++..................+.. T Consensus 146 --vih~k~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 218 (395) T protein:vir:98 146 --VIYLKNDNSDL----MSKVESLWEEYGELLGHVINNQKIANQIRFTMIPPKDK-VRERAQENSDGGRQSKSDKDFFKR 218 (395) T ss_pred --EEEecCCCCCc----cccccchhhhHHHHHHHHHHHHHHHHHHHHhhcccccc-ccccccccCCcHHHHHHHHHHHHH Confidence 23454322111 1222222222222221 1111111 111111 111111 111111000000000000000000 Q ss_pred ccceeeeecC-------CCCCCcceEEec------ccChHHHHHHHHHHHHHHHHHhCCCccccccCCCccchHHHHHHH Q lcl|Aclame:pro 328 DVNVYKSIRM-------GTDEEFVKDVTH------DIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVSE 394 (517) Q Consensus 328 ~~~~y~~~~~-------~~~~~~v~~~~~------dir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~a~ 394 (517) .+.+... -+++..++.++. ...+.++.+..+...++|+..-|++|..++-. . +.+... T Consensus 219 ---~~~~~~~~~~~v~~l~~g~~~~~l~~~~~~~~~~~~~q~~e~~~~~~~~Ia~~fgVP~~~l~~~---~---sn~e~~ 289 (395) T protein:vir:98 219 ---TVEKIRTESVVGIPVTANTNYEEYGSKNTGAVKSYVDDIKKLKDQYMAEFAEMLGIPISLLHGD---I---ADNQKN 289 (395) T ss_pred ---HHhhhhcCCcceeecCCCceeEecccccccccChhHHHHHHHHHHHHHHHHHHhCCCHHHhcCC---c---ccHHHH Confidence 0111000 011112222221 23455777777777888999999999988511 1 111111 Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccceEEEeCCCccCCHHHHHHHHHHHHhcCCCCHHHH Q lcl|Aclame:pro 395 NDLTY-RTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTVEA 473 (517) Q Consensus 395 ~~~~~-~t~~~~~~~~~~al~~li~~il~~~~~~~~~~~~~~~~~~v~i~f~d~i~~d~~~~~~~~~~~~~~G~~S~~~~ 473 (517) ....+ .++.-....++.+|.. .++..... ...+.++|++-+..|..+.++...+++..|+++.-++ T Consensus 290 ~~~f~~~tl~P~~~~ie~~l~~------------kll~~~~~-~~g~~f~~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~ 356 (395) T protein:vir:98 290 YELLLEGPIESLITNIVDGLEY------------AIFDKSET-LQGSFIKVTGLKNYDLFSISNQADKLISSGFVFIDEV 356 (395) T ss_pred HHHHHHHHHHHHHHHHHHHHHH------------hcCChhhh-cCcceeeehhhhccCHHHHHHHHHHHHhCCCcCHHHH Confidence 11111 1122222233332222 11111100 1124577888788899999999999999999999997 Q ss_pred HHhh--CCCCHHHHHHHHHHHHHhccccCCCCCccccCCCCCCCCC Q lcl|Aclame:pro 474 IQRI--FKVPKKTAEQWLEEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) Q Consensus 474 l~~~--~~~~eeea~~el~~i~~E~~~~~~~~~~~~~~~~~~G~ee 517 (517) ++.. .|+.++.+++-+... .-+..+ . .|..+++| T Consensus 357 R~~~g~~Pi~~~~gD~~~~~~--n~~~~~-----~---~gge~~~~ 392 (395) T protein:vir:98 357 REEIGLPELPDGLGKVLYMTK--NYESVL-----E---RGGEVDEE 392 (395) T ss_pred HHHhCCCCCCCCCCceeeecc--cceecc-----c---ccCCCCCC Confidence 6543 233333333222110 000111 0 11111222 Done!