Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 16 lcl|Aclame:protein:vir:104439|NCBI_annot:putative HHsearch (proba=100.00%)
Portal 14 lcl|Aclame:protein:vir:104437|NCBI_annot:putative HHsearch (proba=100.00%)
TermL 13 lcl|Aclame:protein:vir:104436|NCBI_annot:putative Blast (e-value=0)
MTP NOT FOUND
Sheath NOT FOUND
Ad1 NOT FOUND
Hc1 NOT FOUND
Ne1 NOT FOUND
Tc1 NOT FOUND
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 19 lcl|Aclame:protein:vir:104383|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Hc3 25 lcl|Aclame:protein:vir:104388|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.



Proteins Superfamilies Observed Intergene Distance Expected Intergene Distance
Ad3<->Hc3 6 2


Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:104439
protein:vir:10123
protein:vir:3298
86
Stx2 converting bacteriophage II
933W
100 %
100 %
100 %
Portal protein:vir:104437
protein:vir:10117
protein:vir:9950
86
Stx2 converting bacteriophage II
Stx1 converting bacteriophage
100 %
98 %
98 %
TermL protein:vir:104436
protein:vir:10116
protein:vir:9949
86
Stx2 converting bacteriophage II
Stx1 converting bacteriophage
100 %
100 %
100 %
Ad3 protein:vir:104383
protein:vir:10130
protein:vir:9964
86
Stx2 converting bacteriophage II
Stx1 converting bacteriophage
100 %
99 %
99 %
Hc3 protein:vir:104388
protein:vir:10145
protein:vir:9979
86
Stx2 converting bacteriophage II
Stx1 converting bacteriophage
100 %
89 %
89 %