Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : PBC5 | Genbank acc : NC_003324 | Aclame index mge :114

Category to which the Query Phage was assigned : Podoviridae of Type3 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 83

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	7	lcl\|Aclame:protein:vir:5110\|NCBI_annot:unknown\|genbank:acc:NP_542267;genbank:gi:18071229;genbank:Gen	HHsearch (proba=100.00%)
Portal	43	lcl\|Aclame:protein:vir:5146\|NCBI_annot:unknown\|genbank:acc:NP_542303;genbank:gi:18071218;genbank:Gen	HHsearch (proba=100.00%)
TermL	46	lcl\|Aclame:protein:vir:5149\|NCBI_annot:unknown\|genbank:acc:NP_542306;genbank:gi:18071222;genbank:Gen	Blast (e-value=1e-111)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	8	lcl\|Aclame:protein:vir:5111\|NCBI_annot:unknown\|genbank:acc:NP_542268;genbank:gi:18071240;genbank:Gen	HHsearch (proba=100.00%)
Hc3	17	lcl\|Aclame:protein:vir:5120\|NCBI_annot:unknown\|genbank:acc:NP_542277;genbank:gi:18071220;genbank:Gen	HHsearch (proba=100.00%)
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Ad3<->Hc3	9	2

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:93696 protein:vir:104439 protein:vir:10123	Bcep22 86 Stx2 converting bacteriophage II	62 % 31 % 31 %
Portal	protein:vir:93630 protein:vir:104437 protein:vir:10117	Bcep22 86 Stx2 converting bacteriophage II	51 % 24 % 24 %
TermL	protein:vir:93626 protein:vir:105593 protein:vir:104436	Bcep22 F116 86	47 % 40 % 25 %
Ad3	protein:vir:5111 protein:vir:3302 protein:vir:2779	PBC5 933W Stx2 converting bacteriophage I	100 % 34 % 34 %
Hc3	protein:vir:5120 protein:vir:93631 protein:vir:10145	PBC5 Bcep22 Stx2 converting bacteriophage II	100 % 47 % 29 %