BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|Aclame:protein:vir:3867|NCBI_annot:putative large terminase subunit|genbank:acc:NP_680484;swissprot:trembl:q8ltc3;genbank:gi:22296 524;interpro:IPR005021;uniprot:Q8LTC3;genbank:GeneID:951698 (563 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|15101|lcl|protein:vir:3867 Length: 563 # NCBI annotation: put... 1155 0.0 gi|16631|lcl|protein:vir:9699 Length: 584 # NCBI annotation: hyp... 584 e-169 gi|17436|lcl|protein:vir:4596 Length: 564 # NCBI annotation: hyp... 350 4e-98 gi|6158|lcl|protein:vir:98395 Length: 564 # NCBI annotation: pha... 348 7e-98 gi|16578|lcl|protein:vir:9406 Length: 564 # NCBI annotation: ter... 348 7e-98 gi|13570|lcl|protein:vir:4696 Length: 564 # NCBI annotation: phi... 348 7e-98 gi|12519|lcl|protein:vir:79971 Length: 564 # NCBI annotation: te... 347 2e-97 gi|13171|lcl|protein:vir:81099 Length: 564 # NCBI annotation: pu... 347 2e-97 gi|17903|lcl|protein:vir:1080 Length: 604 # NCBI annotation: ter... 281 1e-77 gi|18188|lcl|protein:vir:4993 Length: 623 # NCBI annotation: put... 267 3e-73 gi|8690|lcl|protein:vir:102145 Length: 581 # NCBI annotation: ph... 256 7e-70 gi|15731|lcl|protein:vir:4950 Length: 623 # NCBI annotation: put... 254 2e-69 gi|17207|lcl|protein:vir:7405 Length: 646 # NCBI annotation: put... 248 1e-67 gi|14114|lcl|protein:vir:3986 Length: 657 # NCBI annotation: put... 248 1e-67 gi|14802|lcl|protein:vir:1021 Length: 660 # NCBI annotation: ter... 247 2e-67 gi|13853|lcl|protein:vir:4826 Length: 625 # NCBI annotation: ORF... 236 5e-64 gi|19237|lcl|protein:vir:3842 Length: 624 # NCBI annotation: hyp... 234 2e-63 gi|13199|lcl|protein:vir:81178 Length: 567 # NCBI annotation: pu... 230 3e-62 gi|1545|lcl|protein:vir:100880 Length: 630 # NCBI annotation: pu... 199 9e-53 gi|3997|lcl|protein:vir:100199 Length: 629 # NCBI annotation: pu... 197 2e-52 gi|2959|lcl|protein:vir:102079 Length: 565 # NCBI annotation: te... 192 1e-50 gi|2370|lcl|protein:vir:105001 Length: 565 # NCBI annotation: pu... 191 1e-50 gi|17128|lcl|protein:vir:1379 Length: 581 # NCBI annotation: put... 191 2e-50 gi|2423|lcl|protein:vir:107576 Length: 565 # NCBI annotation: ph... 191 3e-50 gi|2476|lcl|protein:vir:102883 Length: 565 # NCBI annotation: ph... 190 3e-50 gi|1289|lcl|protein:vir:105086 Length: 569 # NCBI annotation: pu... 175 1e-45 gi|986|lcl|protein:vir:5736 Length: 577 # NCBI annotation: termi... 167 2e-43 gi|19929|lcl|protein:vir:4852 Length: 369 # NCBI annotation: put... 164 3e-42 gi|2221|lcl|protein:vir:93883 Length: 563 # NCBI annotation: ORF... 157 3e-40 gi|11420|lcl|protein:vir:78630 Length: 563 # NCBI annotation: pu... 157 3e-40 gi|3108|lcl|protein:vir:94427 Length: 563 # NCBI annotation: ORF... 157 3e-40 gi|17412|lcl|protein:vir:2682 Length: 563 # NCBI annotation: ter... 154 2e-39 gi|8807|lcl|protein:vir:96981 Length: 563 # NCBI annotation: ORF... 154 2e-39 gi|13389|lcl|protein:vir:1263 Length: 416 # NCBI annotation: hyp... 152 8e-39 gi|8562|lcl|protein:vir:100097 Length: 571 # NCBI annotation: gp... 150 4e-38 gi|13932|lcl|protein:vir:1429 Length: 570 # NCBI annotation: put... 147 4e-37 gi|19315|lcl|protein:vir:4508 Length: 577 # NCBI annotation: lar... 146 7e-37 gi|17978|lcl|protein:vir:4335 Length: 563 # NCBI annotation: ter... 145 2e-36 gi|593|lcl|protein:vir:481 Length: 570 # NCBI annotation: putati... 144 4e-36 gi|17922|lcl|protein:vir:4452 Length: 577 # NCBI annotation: Ter... 132 1e-32 gi|12826|lcl|protein:vir:80335 Length: 571 # NCBI annotation: gp... 130 4e-32 gi|967|lcl|protein:vir:6208 Length: 574 # NCBI annotation: Termi... 109 8e-26 gi|15774|lcl|protein:vir:6239 Length: 527 # NCBI annotation: gp3... 107 5e-25 gi|15412|lcl|protein:vir:1325 Length: 519 # NCBI annotation: gp3... 105 1e-24 gi|15611|lcl|protein:vir:188 Length: 504 # NCBI annotation: term... 99 1e-22 gi|14327|lcl|protein:vir:9358 Length: 453 # NCBI annotation: ter... 97 6e-22 gi|16408|lcl|protein:vir:1883 Length: 504 # NCBI annotation: ter... 97 7e-22 gi|1673|lcl|protein:vir:100634 Length: 553 # NCBI annotation: 77... 89 1e-19 gi|6465|lcl|protein:vir:101288 Length: 553 # NCBI annotation: ph... 89 1e-19 gi|18552|lcl|protein:vir:9506 Length: 553 # NCBI annotation: hyp... 89 1e-19 gi|19024|lcl|protein:vir:9640 Length: 576 # NCBI annotation: lar... 85 2e-18 gi|7042|lcl|protein:vir:98644 Length: 576 # NCBI annotation: put... 84 3e-18 gi|14824|lcl|protein:vir:4088 Length: 550 # NCBI annotation: ter... 80 5e-17 gi|17547|lcl|protein:vir:959 Length: 592 # NCBI annotation: term... 80 9e-17 gi|12641|lcl|protein:vir:80117 Length: 572 # NCBI annotation: Ph... 79 1e-16 gi|5726|lcl|protein:vir:95379 Length: 573 # NCBI annotation: pha... 79 1e-16 gi|11068|lcl|protein:vir:78311 Length: 547 # NCBI annotation: pu... 67 6e-13 gi|3559|lcl|protein:vir:101786 Length: 556 # NCBI annotation: gp... 62 1e-11 gi|6615|lcl|protein:vir:95986 Length: 553 # NCBI annotation: ORF... 62 2e-11 gi|4336|lcl|protein:vir:94893 Length: 540 # NCBI annotation: put... 58 3e-10 gi|1848|lcl|protein:vir:93873 Length: 540 # NCBI annotation: put... 57 4e-10 gi|15547|lcl|protein:vir:856 Length: 540 # NCBI annotation: puta... 57 6e-10 gi|2310|lcl|protein:vir:93989 Length: 540 # NCBI annotation: put... 52 2e-08 gi|19080|lcl|protein:vir:1659 Length: 540 # NCBI annotation: ter... 52 2e-08 gi|10332|lcl|protein:vir:97407 Length: 514 # NCBI annotation: te... 50 6e-08 gi|19384|lcl|protein:vir:7851 Length: 887 # NCBI annotation: gp8... 43 1e-05 gi|19608|lcl|protein:vir:4081 Length: 518 # NCBI annotation: ter... 43 1e-05 gi|830|lcl|protein:vir:93598 Length: 553 # NCBI annotation: puta... 43 1e-05 gi|10991|lcl|protein:vir:78228 Length: 903 # NCBI annotation: Pu... 32 0.016 gi|19975|lcl|protein:vir:108214 Length: 544 # NCBI annotation: g... 32 0.018 gi|21825|lcl|protein:vir:98727 Length: 592 # NCBI annotation: te... 32 0.019 gi|11235|lcl|protein:vir:78494 Length: 562 # NCBI annotation: Pu... 32 0.027 gi|18494|lcl|protein:vir:1636 Length: 469 # NCBI annotation: put... 31 0.035 gi|4240|lcl|protein:vir:94734 Length: 469 # NCBI annotation: lar... 30 0.060 gi|19181|lcl|protein:vir:9572 Length: 459 # NCBI annotation: gp3... 30 0.079 gi|28182|lcl|protein:vir:108053 Length: 611 # NCBI annotation: g... 25 1.8 gi|22263|lcl|protein:vir:104536 Length: 550 # NCBI annotation: g... 25 1.9 gi|27701|lcl|protein:vir:6893 Length: 611 # NCBI annotation: gp1... 25 2.0 gi|27407|lcl|protein:vir:7202 Length: 610 # NCBI annotation: gp1... 25 2.2 gi|22056|lcl|protein:vir:103455 Length: 610 # NCBI annotation: t... 25 2.5 gi|20243|lcl|protein:vir:106989 Length: 548 # NCBI annotation: t... 25 2.6 gi|10890|lcl|protein:vir:78144 Length: 530 # NCBI annotation: pr... 25 2.7 gi|1931|lcl|protein:vir:99847 Length: 486 # NCBI annotation: lar... 24 3.6 gi|24012|lcl|protein:vir:104946 Length: 547 # NCBI annotation: T... 24 5.3 >gi|15101|lcl|protein:vir:3867 Length: 563 # NCBI annotation: putative large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:82 # MgeName: A2 # Cross-refs: genbank:acc:NP_680484;swissprot:trembl:q8ltc3;genbank:gi :22296524;interpro:IPR005021;uniprot:Q8LTC3;genbank:Gene ID:951698 Length = 563 Score = 1155 bits (2988), Expect = 0.0, Method: Compositional matrix adjust. Identities = 563/563 (100%), Positives = 563/563 (100%) Query: 1 MPNFIKRVLDGRLITSKAVNLAVKRHQEDLKRTDWRWHYDPNLAGKAVKFMEILPEPKSG 60 MPNFIKRVLDGRLITSKAVNLAVKRHQEDLKRTDWRWHYDPNLAGKAVKFMEILPEPKSG Sbjct: 1 MPNFIKRVLDGRLITSKAVNLAVKRHQEDLKRTDWRWHYDPNLAGKAVKFMEILPEPKSG 60 Query: 61 KPQPLAPFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGVILYEFLFGKN 120 KPQPLAPFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGVILYEFLFGKN Sbjct: 61 KPQPLAPFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGVILYEFLFGKN 120 Query: 121 PANKRQLYTAANDRKQAGIVFGMVKDRLRALMRKDPGIKRMVKITRDELVNLDDGSTIRS 180 PANKRQLYTAANDRKQAGIVFGMVKDRLRALMRKDPGIKRMVKITRDELVNLDDGSTIRS Sbjct: 121 PANKRQLYTAANDRKQAGIVFGMVKDRLRALMRKDPGIKRMVKITRDELVNLDDGSTIRS 180 Query: 181 FSRDTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTAGFDMNVPMF 240 FSRDTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTAGFDMNVPMF Sbjct: 181 FSRDTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTAGFDMNVPMF 240 Query: 241 QQNYPYAKKVLSGEEKAERYFAFIAEQDNVQEVDDPNSWIKSNPLLDVDTLHSQISDYLT 300 QQNYPYAKKVLSGEEKAERYFAFIAEQDNVQEVDDPNSWIKSNPLLDVDTLHSQISDYLT Sbjct: 241 QQNYPYAKKVLSGEEKAERYFAFIAEQDNVQEVDDPNSWIKSNPLLDVDTLHSQISDYLT 300 Query: 301 TKLAQARADGSLNAKLVKNFNIWRQATEDSYLDFDAWKAAELTDKPDIRGQRAWIGIDVG 360 TKLAQARADGSLNAKLVKNFNIWRQATEDSYLDFDAWKAAELTDKPDIRGQRAWIGIDVG Sbjct: 301 TKLAQARADGSLNAKLVKNFNIWRQATEDSYLDFDAWKAAELTDKPDIRGQRAWIGIDVG 360 Query: 361 RTSDLFAISWLIPQEGWWWLDGYAFVASKGGIDNKIKTDRIDYLAAEQHGEGEISSLESG 420 RTSDLFAISWLIPQEGWWWLDGYAFVASKGGIDNKIKTDRIDYLAAEQHGEGEISSLESG Sbjct: 361 RTSDLFAISWLIPQEGWWWLDGYAFVASKGGIDNKIKTDRIDYLAAEQHGEGEISSLESG 420 Query: 421 IIDNDRVYEWLEDFIERNDIDVQGIMYDPYQFGPMLTAIEKNHPEWPMVQVRQGTLTLSM 480 IIDNDRVYEWLEDFIERNDIDVQGIMYDPYQFGPMLTAIEKNHPEWPMVQVRQGTLTLSM Sbjct: 421 IIDNDRVYEWLEDFIERNDIDVQGIMYDPYQFGPMLTAIEKNHPEWPMVQVRQGTLTLSM 480 Query: 481 PTKQFRDDVIGGRIKHSDNRIMQAAAMNAVLMSDNNGVRINKNKYANKIDMIDATLDAYA 540 PTKQFRDDVIGGRIKHSDNRIMQAAAMNAVLMSDNNGVRINKNKYANKIDMIDATLDAYA Sbjct: 481 PTKQFRDDVIGGRIKHSDNRIMQAAAMNAVLMSDNNGVRINKNKYANKIDMIDATLDAYA 540 Query: 541 IAFKEDLDNYLDDDRVFSDDFGF 563 IAFKEDLDNYLDDDRVFSDDFGF Sbjct: 541 IAFKEDLDNYLDDDRVFSDDFGF 563 >gi|16631|lcl|protein:vir:9699 Length: 584 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:174 # MgeName: 315.2 # Cross-refs: genbank:acc:NP_795461;genbank:gi:28876230;genbank:GeneID :1257775 Length = 584 Score = 584 bits (1506), Expect = e-169, Method: Compositional matrix adjust. Identities = 282/548 (51%), Positives = 389/548 (70%), Gaps = 4/548 (0%) Query: 4 FIKRVLDGRLITSKAVNLAVKRHQEDLKRTD---WRWHYDPNLAGKAVKFMEILPEPKSG 60 + K V+D ++ +SK V A RH DLKR D +++ Y P A + F+EILP+ K+G Sbjct: 21 YAKMVVDEQIKSSKKVFKACLRHLNDLKRIDDEDFKFVYLPEKAADPINFIEILPDVKTG 80 Query: 61 KPQPLAPFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGVILYEFLFGKN 120 KP PLA FQKFIIG++YGW K D ++RRF IS+ARKNGK++LI+G++LYEFLFG N Sbjct: 81 KPYPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGKTILIAGILLYEFLFGHN 140 Query: 121 PANKRQLYTAANDRKQAGIVFGMVKDRLRALMRKDPGIKRMVKITRDELVNLDDGSTIRS 180 P+ RQL+ ANDR QA I + M K +L +L KD +++ KI RDEL NL D S IR+ Sbjct: 141 PSMSRQLFCTANDRTQAKIAWDMAKKQLSSLRAKDVDVRKATKIVRDELKNLHDESYIRA 200 Query: 181 FSRDTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTAGFDMNVPMF 240 SRDTG VDG+EP+V V+DE+A +KT +M+E L SGQ L + IISTAG D+NVPM Sbjct: 201 LSRDTGAVDGFEPYVGVLDEFAASKTNEMLELLESGQGQLDNPFILIISTAGMDLNVPMH 260 Query: 241 QQNYPYAKKVLSGEEKAERYFAFIAEQDNVQEVDDPNSWIKSNPLLDVDTLHSQISDYLT 300 YPY K+L GE E YF ++AEQDN +E+ D ++WIKSNP+L+V+ LH ++ DYL Sbjct: 261 TIEYPYITKILDGEITDEGYFGYVAEQDNEEEIKDESNWIKSNPILEVEALHDKLMDYLR 320 Query: 301 TKLAQARADGSLNAKLVKNFNIWRQATEDSYLDFDAWKAAELTDKPDIRGQRAWIGIDVG 360 T+ + G +N L+KNFN+WRQ++E+SY+D +W+ A++ DKPD +R W+G+DVG Sbjct: 321 TRRRVSLETGEINKVLIKNFNMWRQSSEESYIDKQSWELAQI-DKPDTYKRRVWLGVDVG 379 Query: 361 RTSDLFAISWLIPQEGWWWLDGYAFVASKGGIDNKIKTDRIDYLAAEQHGEGEISSLESG 420 R SDLFAIS +I + +W+LD ++FVA+K G+ K K D + Y E+ G EI++LESG Sbjct: 380 RVSDLFAISSVIMMDDYWYLDSFSFVATKYGLTAKEKRDGVSYSNLERQGYCEITTLESG 439 Query: 421 IIDNDRVYEWLEDFIERNDIDVQGIMYDPYQFGPMLTAIEKNHPEWPMVQVRQGTLTLSM 480 +ID++RV E +E+ + N+ +V GI +DPYQFG +LT IEK HPEWP+++V Q T+ L+M Sbjct: 440 VIDDERVLEKIEEMVYTNEWEVNGICFDPYQFGTLLTMIEKRHPEWPLIEVSQTTMVLNM 499 Query: 481 PTKQFRDDVIGGRIKHSDNRIMQAAAMNAVLMSDNNGVRINKNKYANKIDMIDATLDAYA 540 PTKQFRDD+ G+IKHS N ++ A NA + +DNNG+RI+KNK +NKID +DA LD YA Sbjct: 500 PTKQFRDDLKKGKIKHSGNPLLTMAVNNAYIKTDNNGMRIDKNKNSNKIDPLDAALDGYA 559 Query: 541 IAFKEDLD 548 + + E D Sbjct: 560 VCYLEPFD 567 >gi|17436|lcl|protein:vir:4596 Length: 564 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:101 # MgeName: PVL # Cross-refs: genbank:acc:NP_058441;genbank:gi:9635167;genbank:GeneID: 1262735 Length = 564 Score = 350 bits (897), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 195/564 (34%), Positives = 321/564 (56%), Gaps = 11/564 (1%) Query: 4 FIKRVLDGRLITSKAVNLAVKRHQEDLKRTDWRWHYDPNLAGKAVKFMEILPEPKSGKPQ 63 + K+V+ G ++ S KRH ++ H+D +L+ KA+KF+E+LP+PK+ +P Sbjct: 8 YAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHWDNHLSNKAIKFVEMLPDPKTNQPM 67 Query: 64 PLAPFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGVILYEFLFGKNPAN 123 PL FQKFI+GS+YGW R FT +ISMARK GKSL++SG+ + E LFG+ P Sbjct: 68 PLMEFQKFIVGSLYGW---RRGQYRMFTKAYISMARKQGKSLIVSGMSVNELLFGQYPKF 124 Query: 124 KRQLYTAANDRKQAGIVFGMVKDRLRALMRKDPGIKRMVKITRDELVNLDDGSTIRSFSR 183 RQ+Y A++ KQA +F M ++ + K I+ + + ++ ++ S S Sbjct: 125 NRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFAPLSN 184 Query: 184 DTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTAGFDMNVPMFQQN 243 + VDG +P VA++DE A+ +M +G L + LT ++STAG ++N M+Q+ Sbjct: 185 NPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQMYQE- 243 Query: 244 YPYAKKVLSGEEKAERYFAFIAEQDNVQEVDDPNSWIKSNPLLDVDTLHSQISDYLTTKL 303 Y Y K++L+ E +A+ YF + AE D+ +EV D WIK+ PLL+ I + + Sbjct: 244 YKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVKADI 303 Query: 304 AQARADG-SLNAKLVKNFNIWRQATEDSYLDFDAWKAAELTDKPDIRGQRAWIGIDVGRT 362 G S + L+KNFN+W+ EDS LD W+ +T P+I G+ +IG+D+ R Sbjct: 304 QDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQV-ITPMPNINGKDVYIGVDLSRL 362 Query: 363 SDLFAISWLIPQ-EGWWWLDGYAFVASKGGIDNKIKTDRIDYLAAEQHGEGEISSLESGI 421 DL ++ ++ P + +L ++F+ + ++ K K D+I+Y A + GE E + +SG+ Sbjct: 363 DDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETTQSDSGM 422 Query: 422 IDNDRVYEWLEDFIERNDIDVQGIMYDPYQFGPMLTAIEKNHPEWPMVQVRQGTLTLSMP 481 ID+ +V +++ FI +D++VQ + YDP+ +T IE +WP+++V Q LS Sbjct: 423 IDSKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIEVGQSFKALSQS 482 Query: 482 TKQFRDDVIGGRIKHSDNRIMQAAAMNAVLMSD-NNGVRINKNKYANKIDMIDATLDAYA 540 K+FR V RI+H+DN ++ + NAVL+ D + V+INK KID I + + A+ Sbjct: 483 IKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIISIITAFT 542 Query: 541 IA-FKEDLDNYLDDDRVFSDDFGF 563 A E +N+ ++ S++FGF Sbjct: 543 EARMHEFQENWT--EKYESEEFGF 564 >gi|6158|lcl|protein:vir:98395 Length: 564 # NCBI annotation: phage terminase-large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1581 # MgeName: phiPVL(108) # Cross-refs: genbank:acc:YP_918928;genbank:gi:119443690;genbank:GeneI D:4594557 Length = 564 Score = 348 bits (894), Expect = 7e-98, Method: Compositional matrix adjust. Identities = 195/564 (34%), Positives = 320/564 (56%), Gaps = 11/564 (1%) Query: 4 FIKRVLDGRLITSKAVNLAVKRHQEDLKRTDWRWHYDPNLAGKAVKFMEILPEPKSGKPQ 63 + K+V+ G ++ S KRH ++ H+D +L+ KA+KF+E+LP+PK+ +P Sbjct: 8 YAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHWDNHLSNKAIKFVEMLPDPKTNQPM 67 Query: 64 PLAPFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGVILYEFLFGKNPAN 123 PL FQKFI+GS+YGW R FT +ISMARK GKSL++SG+ + E LFG+ P Sbjct: 68 PLMEFQKFIVGSLYGW---RRGQYRMFTKAYISMARKQGKSLIVSGMSVNELLFGQYPKF 124 Query: 124 KRQLYTAANDRKQAGIVFGMVKDRLRALMRKDPGIKRMVKITRDELVNLDDGSTIRSFSR 183 RQ+Y A++ KQA +F M ++ + K I+ + + ++ ++ S S Sbjct: 125 NRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFAPLSN 184 Query: 184 DTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTAGFDMNVPMFQQN 243 + VDG +P VA++DE A+ +M +G L + LT ++STAG ++N M+Q+ Sbjct: 185 NPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQMYQE- 243 Query: 244 YPYAKKVLSGEEKAERYFAFIAEQDNVQEVDDPNSWIKSNPLLDVDTLHSQISDYLTTKL 303 Y Y K++L+ E +A+ YF + AE D+ +EV D WIK+ PLL+ I + + Sbjct: 244 YKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVKADI 303 Query: 304 AQARADG-SLNAKLVKNFNIWRQATEDSYLDFDAWKAAELTDKPDIRGQRAWIGIDVGRT 362 G S + L+KNFN+W+ EDS LD W+ +T P+I G+ +IG+D+ R Sbjct: 304 QDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQV-ITPMPNINGKDVYIGVDLSRL 362 Query: 363 SDLFAISWLIPQ-EGWWWLDGYAFVASKGGIDNKIKTDRIDYLAAEQHGEGEISSLESGI 421 DL ++ ++ P + +L ++F+ + ++ K K D+I+Y A + GE E + +SG+ Sbjct: 363 DDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETTQSDSGM 422 Query: 422 IDNDRVYEWLEDFIERNDIDVQGIMYDPYQFGPMLTAIEKNHPEWPMVQVRQGTLTLSMP 481 ID +V +++ FI +D++VQ + YDP+ +T IE +WP+++V Q LS Sbjct: 423 IDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIEVGQSFKALSQS 482 Query: 482 TKQFRDDVIGGRIKHSDNRIMQAAAMNAVLMSD-NNGVRINKNKYANKIDMIDATLDAYA 540 K+FR V RI+H+DN ++ + NAVL+ D + V+INK KID I + + A+ Sbjct: 483 IKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIISIITAFT 542 Query: 541 IA-FKEDLDNYLDDDRVFSDDFGF 563 A E +N+ ++ S++FGF Sbjct: 543 EARMHEFQENWT--EKYESEEFGF 564 >gi|16578|lcl|protein:vir:9406 Length: 564 # NCBI annotation: terminase-large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:167 # MgeName: phi 13 # Cross-refs: genbank:acc:NP_803384;genbank:gi:29028696;genbank:GeneID :1258137 Length = 564 Score = 348 bits (894), Expect = 7e-98, Method: Compositional matrix adjust. Identities = 195/564 (34%), Positives = 320/564 (56%), Gaps = 11/564 (1%) Query: 4 FIKRVLDGRLITSKAVNLAVKRHQEDLKRTDWRWHYDPNLAGKAVKFMEILPEPKSGKPQ 63 + K+V+ G ++ S KRH ++ H+D +L+ KA+KF+E+LP+PK+ +P Sbjct: 8 YAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHWDNHLSNKAIKFVEMLPDPKTNQPM 67 Query: 64 PLAPFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGVILYEFLFGKNPAN 123 PL FQKFI+GS+YGW R FT +ISMARK GKSL++SG+ + E LFG+ P Sbjct: 68 PLMEFQKFIVGSLYGW---RRGQYRMFTKAYISMARKQGKSLIVSGMSVNELLFGQYPKF 124 Query: 124 KRQLYTAANDRKQAGIVFGMVKDRLRALMRKDPGIKRMVKITRDELVNLDDGSTIRSFSR 183 RQ+Y A++ KQA +F M ++ + K I+ + + ++ ++ S S Sbjct: 125 NRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFAPLSN 184 Query: 184 DTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTAGFDMNVPMFQQN 243 + VDG +P VA++DE A+ +M +G L + LT ++STAG ++N M+Q+ Sbjct: 185 NPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQMYQE- 243 Query: 244 YPYAKKVLSGEEKAERYFAFIAEQDNVQEVDDPNSWIKSNPLLDVDTLHSQISDYLTTKL 303 Y Y K++L+ E +A+ YF + AE D+ +EV D WIK+ PLL+ I + + Sbjct: 244 YKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVKADI 303 Query: 304 AQARADG-SLNAKLVKNFNIWRQATEDSYLDFDAWKAAELTDKPDIRGQRAWIGIDVGRT 362 G S + L+KNFN+W+ EDS LD W+ +T P+I G+ +IG+D+ R Sbjct: 304 QDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQV-ITPMPNINGKDVYIGVDLSRL 362 Query: 363 SDLFAISWLIPQ-EGWWWLDGYAFVASKGGIDNKIKTDRIDYLAAEQHGEGEISSLESGI 421 DL ++ ++ P + +L ++F+ + ++ K K D+I+Y A + GE E + +SG+ Sbjct: 363 DDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETTQSDSGM 422 Query: 422 IDNDRVYEWLEDFIERNDIDVQGIMYDPYQFGPMLTAIEKNHPEWPMVQVRQGTLTLSMP 481 ID +V +++ FI +D++VQ + YDP+ +T IE +WP+++V Q LS Sbjct: 423 IDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIEVGQSFKALSQS 482 Query: 482 TKQFRDDVIGGRIKHSDNRIMQAAAMNAVLMSD-NNGVRINKNKYANKIDMIDATLDAYA 540 K+FR V RI+H+DN ++ + NAVL+ D + V+INK KID I + + A+ Sbjct: 483 IKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIISIITAFT 542 Query: 541 IA-FKEDLDNYLDDDRVFSDDFGF 563 A E +N+ ++ S++FGF Sbjct: 543 EARMHEFQENWT--EKYESEEFGF 564 >gi|13570|lcl|protein:vir:4696 Length: 564 # NCBI annotation: phi PVL ORF 2 homologue # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:102 # MgeName: phiPV83 # Cross-refs: genbank:acc:NP_061628;genbank:gi:9635715;genbank:GeneID: 1263009 Length = 564 Score = 348 bits (894), Expect = 7e-98, Method: Compositional matrix adjust. Identities = 195/564 (34%), Positives = 320/564 (56%), Gaps = 11/564 (1%) Query: 4 FIKRVLDGRLITSKAVNLAVKRHQEDLKRTDWRWHYDPNLAGKAVKFMEILPEPKSGKPQ 63 + K+V+ G ++ S KRH ++ H+D +L+ KA+KF+E+LP+PK+ +P Sbjct: 8 YAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHWDNHLSNKAIKFVEMLPDPKTNQPM 67 Query: 64 PLAPFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGVILYEFLFGKNPAN 123 PL FQKFI+GS+YGW R FT +ISMARK GKSL++SG+ + E LFG+ P Sbjct: 68 PLMEFQKFIVGSLYGW---RRGQYRMFTKAYISMARKQGKSLIVSGMSVNELLFGQYPKF 124 Query: 124 KRQLYTAANDRKQAGIVFGMVKDRLRALMRKDPGIKRMVKITRDELVNLDDGSTIRSFSR 183 RQ+Y A++ KQA +F M ++ + K I+ + + ++ ++ S S Sbjct: 125 NRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFAPLSN 184 Query: 184 DTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTAGFDMNVPMFQQN 243 + VDG +P VA++DE A+ +M +G L + LT ++STAG ++N M+Q+ Sbjct: 185 NPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQMYQE- 243 Query: 244 YPYAKKVLSGEEKAERYFAFIAEQDNVQEVDDPNSWIKSNPLLDVDTLHSQISDYLTTKL 303 Y Y K++L+ E +A+ YF + AE D+ +EV D WIK+ PLL+ I + + Sbjct: 244 YKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVKADI 303 Query: 304 AQARADG-SLNAKLVKNFNIWRQATEDSYLDFDAWKAAELTDKPDIRGQRAWIGIDVGRT 362 G S + L+KNFN+W+ EDS LD W+ +T P+I G+ +IG+D+ R Sbjct: 304 QDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQV-ITPMPNINGKDVYIGVDLSRL 362 Query: 363 SDLFAISWLIPQ-EGWWWLDGYAFVASKGGIDNKIKTDRIDYLAAEQHGEGEISSLESGI 421 DL ++ ++ P + +L ++F+ + ++ K K D+I+Y A + GE E + +SG+ Sbjct: 363 DDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETTQSDSGM 422 Query: 422 IDNDRVYEWLEDFIERNDIDVQGIMYDPYQFGPMLTAIEKNHPEWPMVQVRQGTLTLSMP 481 ID +V +++ FI +D++VQ + YDP+ +T IE +WP+++V Q LS Sbjct: 423 IDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIEVGQSFKALSQS 482 Query: 482 TKQFRDDVIGGRIKHSDNRIMQAAAMNAVLMSD-NNGVRINKNKYANKIDMIDATLDAYA 540 K+FR V RI+H+DN ++ + NAVL+ D + V+INK KID I + + A+ Sbjct: 483 IKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIISIITAFT 542 Query: 541 IA-FKEDLDNYLDDDRVFSDDFGF 563 A E +N+ ++ S++FGF Sbjct: 543 EARMHEFQENWT--EKYESEEFGF 564 >gi|12519|lcl|protein:vir:79971 Length: 564 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1875 # MgeName: tp310-3 # Cross-refs: genbank:acc:YP_001429998;genbank:gi:156604053;genbank:Ge neID:5525431 Length = 564 Score = 347 bits (891), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 194/564 (34%), Positives = 320/564 (56%), Gaps = 11/564 (1%) Query: 4 FIKRVLDGRLITSKAVNLAVKRHQEDLKRTDWRWHYDPNLAGKAVKFMEILPEPKSGKPQ 63 + K+V+ G ++ S KRH ++ H+D +L+ KA+KF+E+LP+PK+ +P Sbjct: 8 YAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHWDNHLSNKAIKFVEMLPDPKTNQPM 67 Query: 64 PLAPFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGVILYEFLFGKNPAN 123 PL FQKFI+GS+YGW R FT +ISMARK GKSL++SG+ + E LFG+ P Sbjct: 68 PLMEFQKFIVGSLYGW---RRGQYRMFTKAYISMARKQGKSLIVSGMSVNELLFGQYPKF 124 Query: 124 KRQLYTAANDRKQAGIVFGMVKDRLRALMRKDPGIKRMVKITRDELVNLDDGSTIRSFSR 183 RQ+Y A++ KQA +F M ++ + K I+ + + ++ ++ S S Sbjct: 125 NRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFAPLSN 184 Query: 184 DTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTAGFDMNVPMFQQN 243 + VDG +P VA++DE A+ +M +G L + LT ++STAG ++N M+Q+ Sbjct: 185 NPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQMYQE- 243 Query: 244 YPYAKKVLSGEEKAERYFAFIAEQDNVQEVDDPNSWIKSNPLLDVDTLHSQISDYLTTKL 303 Y Y K++L+ E +A+ YF + AE D+ +EV D WIK+ PLL+ I + + Sbjct: 244 YKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVKADI 303 Query: 304 AQARADG-SLNAKLVKNFNIWRQATEDSYLDFDAWKAAELTDKPDIRGQRAWIGIDVGRT 362 G S + L+KNFN+W+ EDS LD W+ +T P+I G+ +IG+D+ R Sbjct: 304 QDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQV-ITPMPNINGKDVYIGVDLSRL 362 Query: 363 SDLFAISWLIPQ-EGWWWLDGYAFVASKGGIDNKIKTDRIDYLAAEQHGEGEISSLESGI 421 DL ++ ++ P + +L ++F+ + ++ K K D+I+Y A + GE E + +SG+ Sbjct: 363 DDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETTQSDSGM 422 Query: 422 IDNDRVYEWLEDFIERNDIDVQGIMYDPYQFGPMLTAIEKNHPEWPMVQVRQGTLTLSMP 481 ID +V +++ FI +D++VQ + YDP+ +T IE +WP++++ Q LS Sbjct: 423 IDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIELGQSFKALSQS 482 Query: 482 TKQFRDDVIGGRIKHSDNRIMQAAAMNAVLMSD-NNGVRINKNKYANKIDMIDATLDAYA 540 K+FR V RI+H+DN ++ + NAVL+ D + V+INK KID I + + A+ Sbjct: 483 IKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIISIITAFT 542 Query: 541 IA-FKEDLDNYLDDDRVFSDDFGF 563 A E +N+ ++ S++FGF Sbjct: 543 EARMHEFQENWT--EKYESEEFGF 564 >gi|13171|lcl|protein:vir:81099 Length: 564 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1891 # MgeName: tp310-1 # Cross-refs: genbank:acc:YP_001429870;genbank:gi:156603923;genbank:Ge neID:5525319 Length = 564 Score = 347 bits (891), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 194/564 (34%), Positives = 320/564 (56%), Gaps = 11/564 (1%) Query: 4 FIKRVLDGRLITSKAVNLAVKRHQEDLKRTDWRWHYDPNLAGKAVKFMEILPEPKSGKPQ 63 + K+V+ G ++ S KRH ++ H+D +L+ KA+KF+E+LP+PK+ +P Sbjct: 8 YAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHWDNHLSNKAIKFVEMLPDPKTNQPM 67 Query: 64 PLAPFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGVILYEFLFGKNPAN 123 PL FQKFI+GS+YGW R FT +ISMARK GKSL++SG+ + E LFG+ P Sbjct: 68 PLMEFQKFIVGSLYGW---RRGQYRMFTKAYISMARKQGKSLIVSGMSVNELLFGQYPKF 124 Query: 124 KRQLYTAANDRKQAGIVFGMVKDRLRALMRKDPGIKRMVKITRDELVNLDDGSTIRSFSR 183 RQ+Y A++ KQA +F M ++ + K I+ + + ++ ++ S S Sbjct: 125 NRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFAPLSN 184 Query: 184 DTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTAGFDMNVPMFQQN 243 + VDG +P VA++DE A+ +M +G L + LT ++STAG ++N M+Q+ Sbjct: 185 NPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQMYQE- 243 Query: 244 YPYAKKVLSGEEKAERYFAFIAEQDNVQEVDDPNSWIKSNPLLDVDTLHSQISDYLTTKL 303 Y Y K++L+ E +A+ YF + AE D+ +EV D WIK+ PLL+ I + + Sbjct: 244 YKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVKADI 303 Query: 304 AQARADG-SLNAKLVKNFNIWRQATEDSYLDFDAWKAAELTDKPDIRGQRAWIGIDVGRT 362 G S + L+KNFN+W+ EDS LD W+ +T P+I G+ +IG+D+ R Sbjct: 304 QDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQV-ITPMPNINGKDVYIGVDLSRL 362 Query: 363 SDLFAISWLIPQ-EGWWWLDGYAFVASKGGIDNKIKTDRIDYLAAEQHGEGEISSLESGI 421 DL ++ ++ P + +L ++F+ + ++ K K D+I+Y A + GE E + +SG+ Sbjct: 363 DDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETTQSDSGM 422 Query: 422 IDNDRVYEWLEDFIERNDIDVQGIMYDPYQFGPMLTAIEKNHPEWPMVQVRQGTLTLSMP 481 ID +V +++ FI +D++VQ + YDP+ +T IE +WP++++ Q LS Sbjct: 423 IDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIELGQSFKALSQS 482 Query: 482 TKQFRDDVIGGRIKHSDNRIMQAAAMNAVLMSD-NNGVRINKNKYANKIDMIDATLDAYA 540 K+FR V RI+H+DN ++ + NAVL+ D + V+INK KID I + + A+ Sbjct: 483 IKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIISIITAFT 542 Query: 541 IA-FKEDLDNYLDDDRVFSDDFGF 563 A E +N+ ++ S++FGF Sbjct: 543 EARMHEFQENWT--EKYESEEFGF 564 >gi|17903|lcl|protein:vir:1080 Length: 604 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:21 # MgeName: bIL309 # Cross-refs: genbank:acc:NP_076734;genbank:gi:13095844;genbank:GeneID :920385 Length = 604 Score = 281 bits (720), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 176/551 (31%), Positives = 298/551 (54%), Gaps = 30/551 (5%) Query: 8 VLDGRLITSKAVNLAVKRHQEDLKRTD----WRWHYDPNLAGKAVKFMEILPEPKSGKPQ 63 VLDG +I+ + + A KRH +DL+R D + + YD A K V+F +L + SG+P Sbjct: 23 VLDGTIISGEKIKQACKRHIDDLRRIDKDDAFIYIYDSEQAKKIVEFSTLLKDVTSGEPF 82 Query: 64 PLAPFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGVILYEFLFGKNPAN 123 +P+QKFI+ S+ GW + + +R F +FISMAR NGK+ +++ LY FLFG +P Sbjct: 83 EASPYQKFILASVQGWRNPETKGMR-FKTIFISMARTNGKTQVLATYALYNFLFG-SPKI 140 Query: 124 KRQLYTAANDRKQAGIVFGMVKDRLRALMRKDPGIKRMVKITRDELVNLDDGSTIRSFSR 183 RQL ++ D +F + R + KD K++ K ++++D S + + Sbjct: 141 NRQLAVSSIDIAHTHNLFNYM--RFNWIQLKDGVFKKLAKA-----LDINDNSQVMEIKK 193 Query: 184 DTGLV----------DGYEPHVAVVDEYA--NAKTTDMIETLASGQVLLPSYLTFIISTA 231 + ++ D +VDEY K D I ++ SG V P F ISTA Sbjct: 194 QSAVMKKLSAQGSPADSDHYTTGIVDEYHLFGQKQRDFISSMTSGMVNNPLAQMFFISTA 253 Query: 232 GFDMNVPMFQQNYPYAKKVLSGE-EKAERYFAFIAEQDNVQEVDDPNSWIKSNPLLDVDT 290 G D VPMF+ Y+K + SG+ +E+ I EQD+ E +W KSNPL+++++ Sbjct: 254 GVDPTVPMFEDYKRYSKMLESGDWSSSEKDLVLIWEQDSEDEAYLIETWPKSNPLMEIES 313 Query: 291 LHSQISDYLTTKLAQARADGSLNAKLVKNFNIWRQATEDSYLDFDAWKAAELTDKPDIRG 350 + +++ + T+ + G + VKN N+W+ A +++YL D + A + D+ D G Sbjct: 314 MRKNLTEGMITERDSLNSQGRIRDFYVKNMNLWQNAKKNAYLPLDLVQDA-IVDEFDYFG 372 Query: 351 QRAWIGIDVGRTSDLFAISWLIPQEG---WWWLDGYAFVASKGGIDNKIKTDRIDYLAAE 407 + +IG D +T+D +++++ P G + + +A G I+ K + D IDY A + Sbjct: 373 RDVFIGFDYSQTNDDTSLAFVFPHSGSKFHLYQHSWIPIAKAGSIEAKEQRDNIDYRAVQ 432 Query: 408 QHGEGEISSLESGIIDNDRVYEWLEDFIERNDIDVQGIMYDPYQFGPMLTAIEKNHPEWP 467 + G I+ G+ID D V+ W+ +FIE+N++ V+ I+YD + G + +++ E+ Sbjct: 433 EKGFATITRDRFGLIDEDEVFNWMLNFIEKNELRVKAILYDQWGTGNFIRRLDEVKEEYL 492 Query: 468 MVQVRQGTLTLSMPTKQFRDDVIGGRIKHSDNRIMQAAAMNAVLMSDNNGVRINKNKYAN 527 ++ VRQG +L+ PTK + I I D++ + +NAV +SDNNG++++KN + Sbjct: 493 LIPVRQGIKSLNEPTKFLQSSFIKHNITMLDDQALIQGLVNAVTVSDNNGIKLDKNVNSQ 552 Query: 528 KIDMIDATLDA 538 KID DA ++A Sbjct: 553 KIDAADAIVNA 563 >gi|18188|lcl|protein:vir:4993 Length: 623 # NCBI annotation: putative large subunit terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:109 # MgeName: Sfi21 # Cross-refs: genbank:acc:NP_049967;genbank:gi:9632939;genbank:GeneID: 1262101 Length = 623 Score = 267 bits (682), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 166/548 (30%), Positives = 291/548 (53%), Gaps = 23/548 (4%) Query: 9 LDGRLITSKAVNLAVKRHQEDLKRT---DWRWHYDPNLAGKAVKFMEILPEPKSGKPQPL 65 L+GR++T + LA RH DL+R D+ + YD A K ++F I P +G+P L Sbjct: 39 LEGRIVTGYMIKLACFRHLRDLQRQGNDDFPYTYDTAEADKLLRFARICPNVDTGEPTQL 98 Query: 66 APFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGVILYEFLFGKNPANKR 125 P+QKFI+ ++GW ++ + +RF+ +S+ R GK+ L++ + Y + + + Sbjct: 99 MPWQKFILCMLFGW--RNANGGKRFSRAIVSVGRGQGKTYLMAILTAYSYFIESFGLSNQ 156 Query: 126 QLYTAANDRKQAGIVFGMVKDRLRALMRKDPGIKRMVKITR-----DELVNLDDGSTIRS 180 + KQ + G +K ++ +++K+P K + T D+++ + + +R+ Sbjct: 157 DYLVTSIKFKQTNKLLGYIKSMMKQIIQKEP-FKSLANETELGLHSDQVIMKANNNILRA 215 Query: 181 FSRDTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTAGFDMNVPMF 240 S ++G D + A+ DE +T + + + SGQV +P+ ISTA + +VP F Sbjct: 216 ISAESGQYDSFHFTTAIFDEMGEIETRNAVSKIVSGQVKVPNRQFIQISTAYPNPSVP-F 274 Query: 241 QQNYPYAKKVLSGEE--KAERYFAFIAEQDNVQEVDDPNSWIKSNPLLDVDTLHSQISDY 298 +++ ++ + ++ +A+ Y + QDN++EV P +W+KSNPLLD++ + Sbjct: 275 REDQMIMQQAMEDDDNREADTYLCLVWSQDNLEEVFQPETWMKSNPLLDLEQERDNLMKG 334 Query: 299 LTTKLAQARADGSLNAKLVKNFNIWRQATEDSYLDFDAWKAAELTDKPDIRGQRAWIGID 358 L K G+L+ VKN N W A +S+LD + A + D DI+G+R ++G+D Sbjct: 335 LLDKRDSDLLSGNLSDFQVKNMNCWLLADSNSFLDLKDIENA-VIDDFDIKGKRVYVGLD 393 Query: 359 VGRTSDLFAISWLIPQEGW-----WWLDGYAFV--ASKGGIDNKIKTDRIDYLAAEQHGE 411 SD A+ ++ P G W ++ ++F+ G I+ KI+ D I+Y E G Sbjct: 394 ASMFSDNTALGFVYPYLGEDGSQKWHIEQHSFIPWQQAGSIEAKIEQDGINYRDLETKGF 453 Query: 412 GEISSLESGIIDNDRVYEWLEDFIERNDIDVQGIMYDPYQFGPMLTAIEKNHPEWPMVQV 471 I+S G+I+ + VY W D++E N +DV YD ++ A+E N +P++ + Sbjct: 454 CTITSHPQGLINPEEVYRWFIDYVEDNSLDVVFFGYDAMMVNKIIKALESN-TSFPLMPI 512 Query: 472 RQGTLTLSMPTKQFRDDVIGGRIKHSDNRIMQAAAMNAVLMSDNNGVRINKNKYANKIDM 531 RQ T L PTK + I G I D+ IM+ A +NAV+ DN G++++K K KID+ Sbjct: 513 RQRTSELKDPTKFLQTLFIEGNITRRDDEIMRKALINAVIKEDNIGIQVDKMKSTYKIDV 572 Query: 532 IDATLDAY 539 +DA +DA+ Sbjct: 573 VDALIDAF 580 >gi|8690|lcl|protein:vir:102145 Length: 581 # NCBI annotation: phage terminase, large subunit, putative # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1641 # MgeName: phiSM101 # Cross-refs: genbank:acc:YP_699944;genbank:gi:110804033;genbank:GeneI D:4206689 Length = 581 Score = 256 bits (653), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 179/579 (30%), Positives = 314/579 (54%), Gaps = 40/579 (6%) Query: 8 VLDGRLITSKAVNLAVKRHQEDLKRTD---WRWHYDPNLAGKAVKFMEILPEPK---SGK 61 VL+G+ + + V LA +RH +DL+R+ +++ +D A +++ F E L +G+ Sbjct: 12 VLEGKEVAGRYVKLACQRHIDDLERSKLAPYKYEFDLEKALESIDFFEDLRFTDGEIAGQ 71 Query: 62 PQPLAPFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGVILYEFLFGKNP 121 L FQ FI+GSI+GWV K + RRF ++ +ARKN KSLL SG+ + F K P Sbjct: 72 QVKLFGFQDFIVGSIFGWVCKG-TGYRRFKKSYVQLARKNAKSLLNSGIGIKLAAFDKYP 130 Query: 122 ANKRQLYTAANDRKQAGIVFGMVKDRLRALMRKDPGIKRMVKITRDELV--NLDDGSTIR 179 Q+Y A KQA IV+ + R + +P ++ + KI + + +L +G I Sbjct: 131 --NAQVYCTATKMKQARIVW----KQARKFIEIEPDLREIFKIKDHDAIIESLINGGEIM 184 Query: 180 SFSRDTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTAGFDMNVPM 239 + RDTG +DG++PH ++DEY + KT M++ L G V L II+TAGF++N P Sbjct: 185 ALGRDTGTIDGFDPHGGIIDEYHSHKTNQMVKLLEDGSVNQAESLISIITTAGFNLNGPC 244 Query: 240 FQQNYPYAKKVLSGEEKAERYFAFIAEQDNVQEVDDPNSWIKSNPLLDVDTLHSQISDYL 299 +++ + Y K VL G + YF +IA+ D ++ DPN+W+K+NPL V L + + L Sbjct: 245 YKE-WEYCKNVLEGIVNNDEYFIYIAQMDVEDDIWDPNNWLKANPL--VAKLPKGLEN-L 300 Query: 300 TTKLAQARADGSLNAK--LVKNFNIWRQATEDSYLDFDAWK--AAELTDKPDIRGQRAWI 355 +++ G + K L K+ NIW + + D Y+ WK A++LT + +G+ + Sbjct: 301 KRFAEESKQKGGDDLKNFLTKSLNIWYEFSNDQYIGPSVWKVGASKLT-LENFKGKTCYA 359 Query: 356 GIDVGRTSDLFAISWLIPQE---------GWWWLDGYAFVASKGGIDNKIKTDRIDYLAA 406 G+D+ DL +++ + P E +++ ++F+ K + I++D + Y Sbjct: 360 GLDLSSGGDLTSLALIFPYEFEKENGEKVRKYFIHSHSFIP-KRRVAEHIQSDDVPYDVW 418 Query: 407 EQHGEGEISSLESGI-IDNDRVYEWLEDFIERNDIDVQGIMYDPYQFGPMLTAIEKNHPE 465 ++G ++ GI D + ++L D IE + + + YDP+ L +E+ Sbjct: 419 IENGLLTVTETLGGIKTDYKYIIKYLRDLIEEFQLKIIQLGYDPHNADTFLQDLEE--LG 476 Query: 466 WPMVQVRQGTLTLSMPTKQFRDDVIGGRIKHS-DNRIMQAAAMNAVLMSDNNG-VRINKN 523 + V++ Q L+ PT+ F+ + G I+++ +N ++ + +NA L+S++NG ++I+KN Sbjct: 477 FDCVEIFQSCKWLNDPTEDFKLECEAGNIEYNEENELLSWSVVNAKLVSNSNGEIKIDKN 536 Query: 524 KYANKIDMIDATLDAYAIAFK-EDLDNYLDDDRVFSDDF 561 +ID +DA +DAY +AFK E L+ +D ++ DF Sbjct: 537 LQEKRIDPVDAVIDAYKLAFKSEKLNTKVDINKYAEKDF 575 >gi|15731|lcl|protein:vir:4950 Length: 623 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:108 # MgeName: Sfi19 # Cross-refs: genbank:acc:NP_049926;genbank:gi:9632897;genbank:GeneID: 1262073 Length = 623 Score = 254 bits (649), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 165/550 (30%), Positives = 289/550 (52%), Gaps = 25/550 (4%) Query: 8 VLDGRLITSKAVNLAVKRHQEDLKRT---DWRWHYDPNLAGKAVKFMEILPEPKSGKPQP 64 VL+GR+ + LA RH DL+R D+ + YD + A + ++F I P +G+P Sbjct: 38 VLEGRITAGYMIKLACFRHLRDLQRQGNDDFPYSYDTDEAARLLRFARICPNVDTGEPTK 97 Query: 65 LAPFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGVILYE-FLFGKNPAN 123 L +QKFI+ ++GW ++ + +RF+ +S+ R GK+ L++ + Y F+ +N Sbjct: 98 LMAWQKFILCMLFGW--RNANGGKRFSRAIVSVGRGQGKTYLMAILTAYSYFIESLGLSN 155 Query: 124 KRQLYTAANDRKQAGIVFGMVKDRLRALMRKDPGIKRMVKITR-----DELVNLDDGSTI 178 + L T+ N KQ + G +K ++ +++ +P K + T D+++ + + + Sbjct: 156 QDYLVTSIN-FKQTNKLLGYIKSMMKQIIQNEP-FKSLANETELGLHSDQVIMKANNNVL 213 Query: 179 RSFSRDTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTAGFDMNVP 238 R+ S ++G D + A+ DE +T D + + SGQV +P+ ISTA + +VP Sbjct: 214 RAISAESGQYDSFHFTTAIFDEIGEIETRDAVSKIVSGQVKVPNRQFIQISTAYPNPSVP 273 Query: 239 MFQQNYPYAKKVLSGEEK--AERYFAFIAEQDNVQEVDDPNSWIKSNPLLDVDTLHSQIS 296 F+++ ++ + ++ A+ Y + QDN++EV P +W KSNPLLD++ + Sbjct: 274 -FREDQRIMQQAMEDDDSRDADTYLCLVWSQDNLEEVFKPETWAKSNPLLDLEQERENLM 332 Query: 297 DYLTTKLAQARADGSLNAKLVKNFNIWRQATEDSYLDFDAWKAAELTDKPDIRGQRAWIG 356 L K G++ VKN N W A +S+LD + A + + D RG+R ++G Sbjct: 333 KGLMDKRDSDLLSGNIADFQVKNMNCWLLADSNSFLDLKDIENAVIPEF-DRRGKRVYVG 391 Query: 357 IDVGRTSDLFAISWLIPQEGW-----WWLDGYAFV--ASKGGIDNKIKTDRIDYLAAEQH 409 +D SD AI ++ P G W ++ ++F+ G ++ K++ D ++Y E Sbjct: 392 LDASMFSDNTAIGFVYPYLGEDGSQKWHVEQHSFIPWQQAGSLEAKMEQDGVNYRDLEAK 451 Query: 410 GEGEISSLESGIIDNDRVYEWLEDFIERNDIDVQGIMYDPYQFGPMLTAIEKNHPEWPMV 469 G I+S G+I+ + VY W D++E N +DV YD ++ A+E N P++ Sbjct: 452 GFCTITSHPQGLINPEEVYRWFVDYVEDNALDVVFFGYDAMMINKIIKALESN-TSLPLM 510 Query: 470 QVRQGTLTLSMPTKQFRDDVIGGRIKHSDNRIMQAAAMNAVLMSDNNGVRINKNKYANKI 529 +RQ T L PTK + I G I D+ IM+ A +NAV+ DN G++++K K KI Sbjct: 511 PIRQRTSELKDPTKFLQTLFIEGNITRLDDEIMRKALINAVIKEDNIGIQVDKMKSTYKI 570 Query: 530 DMIDATLDAY 539 D++DA +DA+ Sbjct: 571 DVVDALIDAF 580 >gi|17207|lcl|protein:vir:7405 Length: 646 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:146 # MgeName: P335 # Cross-refs: genbank:acc:NP_839922;genbank:gi:30089892;genbank:GeneID :1260673 Length = 646 Score = 248 bits (633), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 163/548 (29%), Positives = 286/548 (52%), Gaps = 23/548 (4%) Query: 8 VLDGRLITSKAVNLAVKRHQEDLKRT---DWRWHYDPNLAGKAVKFMEILPEPKSGKPQP 64 VLD + T + LA RH +DLKR D+ ++Y+ + +KF ++ P + +P Sbjct: 48 VLDEKYTTGYLMQLACFRHLQDLKRIGNEDFPFNYEVKHVKRLMKFSKMAPNVDTMEPTK 107 Query: 65 LAPFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGVILYEFLFGKNPANK 124 L +QKF++ + GW +K+ +RF+ IS+ R GK+ +++ ++ Y F + Sbjct: 108 LMEWQKFMLSLLIGWRNKEGG--KRFSRAIISVGRGQGKTYMLAILMAYSFFVESRGLSN 165 Query: 125 RQLYTAANDRKQAGIVFGMVKDRLRALMRKDP----GIKRMVKITRDELVNLDDGSTIRS 180 + ++ + KQ G ++G +K + L +P K + + D+++ + + IR Sbjct: 166 QDFLVSSINAKQTGKLYGYLKSMINVLRTINPWKNIADKTDLSLQADKIIMRNHNNVIRP 225 Query: 181 FSRDTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTAGFDMNVPMF 240 S + G D Y A+ DE K+ + I + SGQV +P+ ISTA D VP F Sbjct: 226 ISHEAGQYDSYHFTTAIFDEIGEVKSREKISKIVSGQVKVPNRQFVQISTAYPDPTVP-F 284 Query: 241 QQNYPYAKKVLSGE--EKAERYFAFIAEQDNVQEVDDPNSWIKSNPLLDVDTLHSQISDY 298 ++ ++ + + A+ Y I D++ E P +W+KSNPLLD+ + H + Sbjct: 285 HEDEKMLQQAMEQDFLRDADTYLCLIWSNDSLDETYKPETWVKSNPLLDLASEHDNLMQG 344 Query: 299 LTTKLAQARADGSLNAKLVKNFNIWRQATEDSYLDF-DAWKAAELTDKPDIRGQRAWIGI 357 L K G+++ KN N+W + DSYL+ D KA + + +I GQR ++G+ Sbjct: 345 LLDKRDNDVLTGAVHDFQCKNLNMWLSSDIDSYLNLADVEKA--IVPEFNIYGQRCYVGV 402 Query: 358 DVGRTSDLFAISWLIP---QEGW--WWLDGYAFV--ASKGGIDNKIKTDRIDYLAAEQHG 410 D +SD A++++ P +EG W ++ ++F+ + G I+ K K D I+Y E G Sbjct: 403 DYSMSSDNTAVAFVYPYVSEEGQAKWHVEQHSFIPFQAAGSIEAKEKQDGINYRELETKG 462 Query: 411 EGEISSLESGIIDNDRVYEWLEDFIERNDIDVQGIMYDPYQFGPMLTAIEKNHPEWPMVQ 470 I+S + G+I++D YEW+ ++IE N +DV YD ++ + N+ + + Sbjct: 463 FCTITSHQQGLINDDEFYEWIVNYIEENSLDVLFFGYDAMGVTKVIQML-LNNTGFNLQP 521 Query: 471 VRQGTLTLSMPTKQFRDDVIGGRIKHSDNRIMQAAAMNAVLMSDNNGVRINKNKYANKID 530 +RQ T L+ PTK + + G I D++IM+ A +NAVL D+ G++++K K KID Sbjct: 522 IRQRTGELAKPTKFLQKIFVEGTISRLDDKIMEKALLNAVLREDSVGIQVDKRKATLKID 581 Query: 531 MIDATLDA 538 ++DA +DA Sbjct: 582 VVDAIIDA 589 >gi|14114|lcl|protein:vir:3986 Length: 657 # NCBI annotation: putative large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:319 # MgeName: BK5-T # Cross-refs: genbank:acc:NP_116494;genbank:gi:14251127;genbank:GeneID :921256 Length = 657 Score = 248 bits (633), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 170/552 (30%), Positives = 288/552 (52%), Gaps = 28/552 (5%) Query: 8 VLDGRLITSKAVNLAVKRHQEDLKRT---DWRWHYDPNLAGKAVKFMEILPEPKSGKPQP 64 VLDG + LA RH DL+R D+ + Y +K ++P +G+P Sbjct: 56 VLDGITKSGYLTKLAAFRHLRDLQRIGREDFPYRYSKKEIKNLLKVASVVPNVDTGEPTE 115 Query: 65 LAPFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGVILYEFLFGKNPANK 124 L P+QKFI+ + GW ++ +RFT IS++R GK+ +++ +++Y FLF + Sbjct: 116 LMPWQKFIMCMLIGW--RNSEGGKRFTVAIISVSRGQGKTYILAILMVYSFLFESLGLSN 173 Query: 125 RQLYTAANDRKQAGIVFGMVKDRLRALMRKDPGIKRMV--------KITRDELVNLDDGS 176 + ++ + KQ +FG VK L+ +++ +P K + I DE+V + Sbjct: 174 QDFLVSSINFKQTSKLFGYVKTMLKTVIKIEP-FKTIAAETGLTDRSILNDEVVMKKMNN 232 Query: 177 TIRSFSRDTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTAGFDMN 236 IR+ S + G D + A+ DE + I + SGQVL+ ++ IST+ D + Sbjct: 233 KIRAISHEAGQYDSFHFTTAIFDEIGEVTNREKISKIVSGQVLVKNHQFVQISTSYPDPS 292 Query: 237 VPMFQQNYPYAKKVLSGE--EKAERYFAFIAEQDNVQEVDDPNSWIKSNPLLDVDTLHSQ 294 VP F+++ ++ + + +A+ + QD++ E +P +W+KSNPLL+++ Sbjct: 293 VP-FRKDQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFEPETWVKSNPLLELEDKKDI 351 Query: 295 ISDYLTTKLAQARADGSLNAKLVKNFNIWRQATEDSYLDF-DAWKAAELTDKPDIRGQRA 353 + L K G+L+ KN N+W Q DSYL+ D KA + + I GQR Sbjct: 352 LLKGLIDKRNSDLLQGTLHDFQTKNLNMWLQQDVDSYLNLADVEKA--IIPEFSIHGQRC 409 Query: 354 WIGIDVGRTSDLFAISWLIP---QEGW--WWLDGYAFVASK--GGIDNKIKTDRIDYLAA 406 +IGID SD AI+++ P EG W ++ ++FV + G ID K K D I+Y Sbjct: 410 YIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHVEQHSFVPFQRAGSIDAKEKQDGINYREL 469 Query: 407 EQHGEGEISSLESGIIDNDRVYEWLEDFIERNDIDVQGIMYDPYQFGPMLTAIEKNHPEW 466 E++G ++S + G+I++D VYEW+ ++IE N +DV YD ++ + N+ + Sbjct: 470 EKYGFCTVTSHQQGLINDDEVYEWIVNYIEDNALDVIFFGYDAMGITKVIQML-MNNTGY 528 Query: 467 PMVQVRQGTLTLSMPTKQFRDDVIGGRIKHSDNRIMQAAAMNAVLMSDNNGVRINKNKYA 526 + +RQ T L PTK + + G I D++IM+ + +NAVL D+ G++++K K Sbjct: 529 NLQPIRQRTSELKDPTKFLQKLFVEGSISRLDDKIMEKSLLNAVLREDSIGIQVDKRKAT 588 Query: 527 NKIDMIDATLDA 538 KID++DA +DA Sbjct: 589 LKIDVVDAIIDA 600 >gi|14802|lcl|protein:vir:1021 Length: 660 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:20 # MgeName: bIL286 # Cross-refs: genbank:acc:NP_076675;genbank:gi:13095784;genbank:GeneID :920366 Length = 660 Score = 247 bits (631), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 169/552 (30%), Positives = 288/552 (52%), Gaps = 28/552 (5%) Query: 8 VLDGRLITSKAVNLAVKRHQEDLKRT---DWRWHYDPNLAGKAVKFMEILPEPKSGKPQP 64 VLDG + LA RH DL+R D+ + Y +K ++P +G+P Sbjct: 59 VLDGITKSGYLTKLAAFRHLRDLQRIGREDFPYRYSKKEIKNLLKVASVVPNVDTGEPTE 118 Query: 65 LAPFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGVILYEFLFGKNPANK 124 L P+QKFI+ + GW ++ +RFT IS++R GK+ +++ +++Y FLF + Sbjct: 119 LMPWQKFIMCMLIGW--RNSEGGKRFTVAIISVSRGQGKTYILAILMVYSFLFESLGLSN 176 Query: 125 RQLYTAANDRKQAGIVFGMVKDRLRALMRKDPGIKRMV--------KITRDELVNLDDGS 176 + ++ + KQ +FG VK L+ +++ +P K + I DE+V + Sbjct: 177 QDFLVSSINFKQTSKLFGYVKTMLKTVIKIEP-FKTIAAETGLTDRSILNDEVVMKKMNN 235 Query: 177 TIRSFSRDTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTAGFDMN 236 IR+ S + G D + A+ DE + I + SGQV++ ++ IST+ D + Sbjct: 236 KIRAISHEAGQYDSFHFTTAIFDEIGEVTNREKISKIVSGQVMVENHQFVQISTSYPDPS 295 Query: 237 VPMFQQNYPYAKKVLSGE--EKAERYFAFIAEQDNVQEVDDPNSWIKSNPLLDVDTLHSQ 294 VP F+++ ++ + + +A+ + QD++ E +P +W+KSNPLL+++ Sbjct: 296 VP-FRKDQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFEPETWVKSNPLLELEDKKDI 354 Query: 295 ISDYLTTKLAQARADGSLNAKLVKNFNIWRQATEDSYLDF-DAWKAAELTDKPDIRGQRA 353 + L K G+L+ KN N+W Q DSYL+ D KA + + I GQR Sbjct: 355 LLKGLIDKRNSDLLQGTLHDFQTKNLNMWLQQDVDSYLNLADVEKA--IIPEFSIHGQRC 412 Query: 354 WIGIDVGRTSDLFAISWLIP---QEGW--WWLDGYAFVASK--GGIDNKIKTDRIDYLAA 406 +IGID SD AI+++ P EG W ++ ++FV + G ID K K D I+Y Sbjct: 413 YIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHVEQHSFVPFQRAGSIDAKEKQDGINYREL 472 Query: 407 EQHGEGEISSLESGIIDNDRVYEWLEDFIERNDIDVQGIMYDPYQFGPMLTAIEKNHPEW 466 E++G ++S + G+I++D VYEW+ ++IE N +DV YD ++ + N+ + Sbjct: 473 EKYGFCTVTSHQQGLINDDEVYEWIVNYIEDNALDVIFFGYDAMGITKVIQML-MNNTGY 531 Query: 467 PMVQVRQGTLTLSMPTKQFRDDVIGGRIKHSDNRIMQAAAMNAVLMSDNNGVRINKNKYA 526 + +RQ T L PTK + + G I D++IM+ + +NAVL D+ G++++K K Sbjct: 532 NLQPIRQRTSELKDPTKFLQKLFVEGSISRLDDKIMEKSLLNAVLREDSIGIQVDKRKAT 591 Query: 527 NKIDMIDATLDA 538 KID++DA +DA Sbjct: 592 LKIDVVDAIIDA 603 >gi|13853|lcl|protein:vir:4826 Length: 625 # NCBI annotation: ORF22 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:105 # MgeName: 7201 # Cross-refs: genbank:acc:NP_038323;genbank:gi:9634649;genbank:GeneID: 1262609 Length = 625 Score = 236 bits (602), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 170/558 (30%), Positives = 285/558 (51%), Gaps = 40/558 (7%) Query: 8 VLDGRLITSKAVNLAVKRHQEDLKRT---DWRWHYDPNLAGKAVKFMEILP--EPKSGKP 62 VLDG+++ + LA RH DL+R D+ + Y + +KF+ ++P + S K Sbjct: 39 VLDGKIVAGYNIRLACFRHLRDLQRQGNKDFPYVYSIEAFNRFLKFLSLVPNVDDLSQKL 98 Query: 63 QPLAPFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGVIL-YEFLFGKNP 121 +P+ +Q FI I+ W D D N+ RF+++ IS+AR GK++ I+G+ L + +L Sbjct: 99 EPM-DWQLFIFSQIFAWFDLD--NVPRFSNIIISIARSQGKTM-IAGICLNFSYLIEIIG 154 Query: 122 ANKRQLYTAANDRKQAGIVFGMVKDRLRALMRKDP----GIKRMVKITRDELVNLDDGST 177 + + ++ Q +F VK + ++ +P + +++ E+ +L D +T Sbjct: 155 QSNQDFLVSSLTFDQTMKLFTYVKSMMARIIENEPFKSLAEETQLQLYSREIKSLLDANT 214 Query: 178 IRSFSRDTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTAGFDMNV 237 I + S ++G D +AV DE +T + I + SGQV IST+ +V Sbjct: 215 INTISFESGKFDSKHFKLAVADEVGELRTDEGISKITSGQVNTEGSRFIEISTSYQTPDV 274 Query: 238 PMFQQNYPYAKKVLSGEEK-----AERYFAFIAEQDNVQEVDDPNSWIKSNPLLDVDTLH 292 P Q+ KK++ E+ + I QDN++EV P +W KSNPLL+ H Sbjct: 275 PFHQEQ----KKLIEIMERDFDRSGDDQLCLIWSQDNLEEVFKPETWAKSNPLLN----H 326 Query: 293 SQISDYLTTKLAQARADGSLNAKL----VKNFNIWRQATEDSYLDFDAWKAAELTDKPDI 348 ++ + L L R L KL VKN N W A +S+LD + A + + DI Sbjct: 327 PELKEGLMKGLLSERDKKLLMGKLADFQVKNMNCWLLADSNSFLDLTDIENAVIPEF-DI 385 Query: 349 RGQRAWIGIDVGRTSDLFAISWLIPQEGW-----WWLDGYAFV--ASKGGIDNKIKTDRI 401 RG+R ++G+D SD AI ++ P G W ++ ++F+ G ++ K++ D + Sbjct: 386 RGKRVYVGLDASMFSDNTAIGFVYPYLGEDGSQKWHVEQHSFIPWQQAGSLEAKMEQDGV 445 Query: 402 DYLAAEQHGEGEISSLESGIIDNDRVYEWLEDFIERNDIDVQGIMYDPYQFGPMLTAIEK 461 +Y E+ G I+S G+I+ + VY W D++E N +DV YD ++ A+E Sbjct: 446 NYRDLEEKGYCTITSHPQGLINPEEVYRWFCDYVEDNALDVVFFGYDAMGVSKIIKALES 505 Query: 462 NHPEWPMVQVRQGTLTLSMPTKQFRDDVIGGRIKHSDNRIMQAAAMNAVLMSDNNGVRIN 521 N +P++ +RQ T L PTK + I G I D+ IM+ A +NAV+ DN G++++ Sbjct: 506 N-TSFPLMPIRQRTSELKDPTKFLQTLFIEGNITRLDDEIMRKALINAVIKEDNIGIQVD 564 Query: 522 KNKYANKIDMIDATLDAY 539 K K KID++DA +DA+ Sbjct: 565 KMKSTYKIDVVDALIDAF 582 >gi|19237|lcl|protein:vir:3842 Length: 624 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:322 # MgeName: phi adh # Cross-refs: genbank:acc:NP_050148;swissprot:trembl:q9t1f9;genbank:gi :9633040;uniprot:Q9T1F9;genbank:GeneID:1262205 Length = 624 Score = 234 bits (597), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 157/549 (28%), Positives = 286/549 (52%), Gaps = 28/549 (5%) Query: 8 VLDGRLITSKAVNLAVKRHQEDLKRT---DWRWHYDPNLAGKAVKFMEILPEPKSGKPQP 64 VL+G + + LA RH DL+R D+ +HYD + A + ++F +I P +G+P Sbjct: 38 VLNGTKLAGYKIKLASFRHLMDLRRQGQPDFPYHYDVDEANRLLRFAKICPNVDTGEPTK 97 Query: 65 LAPFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGVILYEFLFGKNPANK 124 L +Q+F ++GW DKD N +RFT V S+AR GK+ ++ ++ Y FL + Sbjct: 98 LMEWQEFTFALMFGWRDKD--NNKRFTRVIDSVARGQGKTYQMAILVCYSFLIESVGLSN 155 Query: 125 RQLYTAANDRKQAGIVFGMVKDRLRALMRKDP----GIKRMVKITRDELVNLDDGSTIRS 180 + A+ + KQ +FG V +R +++ +P + + I D+++ + + +R+ Sbjct: 156 QDYLVASINFKQTMKLFGYVASMMRKIIQIEPFKSYANEVNLYIQSDQIIMKKNNNVLRA 215 Query: 181 FSRDTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTAGFDMNVPMF 240 S + G D Y A+ DE K+ + + + SGQV + ++ IST+ D VP Sbjct: 216 ISLEAGQYDSYHFRTAIFDEIGEVKSRETVSKIISGQVKVSNHQFIQISTSYPDPTVPFH 275 Query: 241 QQNYPYAKKVLSGEEK-----AERYFAFIAEQDNVQEVDDPNSWIKSNPLLDVDTLHSQI 295 + K ++ E+ A+ Y I QD++ E P +W+KSNPLLD+ + Sbjct: 276 EDQ----KMIIQAMEQDWKRDADSYLGLIWSQDSLDETYKPETWVKSNPLLDLPDQRDNL 331 Query: 296 SDYLTTKLAQARADGSLNAKLVKNFNIWRQATEDSYLDFDAWKAAELTDKPDIRGQRAWI 355 LT K G+++ KN N+W + + DSYL+ + A D +I G +I Sbjct: 332 LKGLTDKRDSDLLTGNISDFQTKNLNLWLKQSTDSYLNLKDVEDAVYNDF-NIDGHEVFI 390 Query: 356 GIDVGRTSDLFAISWLIP-QEGWWWLDGYAFV--ASKGGIDNKIKTDRIDYLAAEQHGEG 412 G D SD A+S++ P +G + ++ ++F+ G I+ K K D I Y ++ Sbjct: 391 GFDYSMFSDNTALSFVYPYDDGKFHIEQHSFIPFQQAGSIEAKEKQDGITYRNYPEY--C 448 Query: 413 EISSLESGIIDNDRVYEWLEDFIERNDIDVQGIMYD---PYQFGPMLTAIEKNHPEWPMV 469 I++ GII+ +++Y+WL +++E++ + V+ YD YQ + ++ N +W ++ Sbjct: 449 TITAHPQGIINPEQIYKWLLNYVEQHQLKVKFFGYDRFGSYQVKNITESLNVN-TDWYIM 507 Query: 470 QVRQGTLTLSMPTKQFRDDVIGGRIKHSDNRIMQAAAMNAVLMSDNNGVRINKNKYANKI 529 ++Q T L+ PTK ++ + ++ ++ +MQ A +NAV+ +D G+ ++K+K +I Sbjct: 508 DIQQRTSALANPTKFLQELFVTHKVTIPNDPVMQKALLNAVIKADKIGIHVDKDKATLQI 567 Query: 530 DMIDATLDA 538 D++DA +DA Sbjct: 568 DVVDAIIDA 576 >gi|13199|lcl|protein:vir:81178 Length: 567 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1892 # MgeName: Geobacillus virus E2 # Cross-refs: genbank:acc:YP_001285808;genbank:gi:148747729;genbank:Ge neID:5247221 Length = 567 Score = 230 bits (587), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 161/551 (29%), Positives = 291/551 (52%), Gaps = 35/551 (6%) Query: 3 NFIKRVLDGRLITSKAVNLAVKRHQEDLKRT---DWRWHYDPNLAGKAVKFMEILPEPK- 58 ++ + V+DGR I + A +R D++R D+ +++D + ++ + K Sbjct: 11 HYAQDVVDGRTIACQKHKWACERFLNDIERITEDDFPYYFDGEELYRFYRWARMFKHNKG 70 Query: 59 --SGKPQPLAPFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGVILYEFL 116 +G+P L FQ FI+G+I+GW K++ +RRF +I +ARKN KS L++ + YE Sbjct: 71 ILAGQPIELTDFQLFIVGNIFGWKRKENG-LRRFRKAYIQLARKNAKSQLLALIASYECF 129 Query: 117 FGKNPANKRQLYTAANDRKQAGIVFGMVKDRLRALMRKDPGIKRMVKITRDELVNLDDGS 176 + ++Y A R+Q+ IV+ V +++A +K + + + GS Sbjct: 130 LS---PEQSEVYIAGWGREQSSIVYNEVLAQVQAC----DLLKGKYTDSYGRIRHKKSGS 182 Query: 177 TIRSFS---RDTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTAGF 233 I+ S R TG DG P +AV+DEY +T+++ + L SG V + L II+TAGF Sbjct: 183 IIQPLSKEARKTG--DGKNPSLAVIDEYHTHETSEIYDVLVSGMVARQNPLIVIITTAGF 240 Query: 234 DMNVPMFQQNYPYAKKVL--SGEEKAERYFAFIAEQDNVQEVDDPNSWIKSNPLLDVDTL 291 ++ P + + Y Y KV+ + E YF I E D ++ D +W+K+NP++ Sbjct: 241 NLASPCYTE-YQYVSKVIDPGSPIENEEYFVMICELDKDDDIKDERNWVKANPIV---AT 296 Query: 292 HSQISDYLTTKLAQAR-ADGSLNAKLVKNFNIWRQATEDSYLDFDAWKAAELTDKPDIRG 350 + + ++L ++L A + + L KN NIW ++ YL D W+A + ++ D+ Sbjct: 297 YEEGMNFLRSELQTALDVPEKMRSFLTKNMNIWVDQKDNGYLPLDKWRACAIKEQIDLDV 356 Query: 351 QRAWIGIDVGRTSDLFAISWLIPQE-GWWWLDGYAFVASKGGIDNKIKTDRIDY-LAAEQ 408 + ++GID+ DL ++S ++P + G +++ ++F+ + + K +TD++ Y L +Q Sbjct: 357 RDCYVGIDLSMRIDLTSVSGIVPMDDGRFYVWSHSFIP-EDTLAEKRRTDKVPYDLWVKQ 415 Query: 409 HGEGEISSLESGIIDNDRVYEWLEDFIERNDIDVQGIMYDPYQFGPMLTAIEKNHPEWPM 468 G I+ ++D + +++ E +++ I YDPY +E + M Sbjct: 416 ---GWITVTPGAVVDYQFIQAYIKRLAEDKMWNIKEICYDPYNATHFAHEMEAEG--YVM 470 Query: 469 VQVRQGTLTLSMPTKQFRDDVIGGRIKHSDNRIMQAAAMNAVLMSDNN-GVRINKNKYAN 527 V++RQG TLS PTK+FR+ V+ G+I H DN ++ A NAV+ D+N + ++K+K Sbjct: 471 VEIRQGFRTLSEPTKRFRELVLSGKILHDDNPVLNWAIGNAVVKQDHNENIMLDKDKSTG 530 Query: 528 KIDMIDATLDA 538 +ID I A ++A Sbjct: 531 RIDPIAALINA 541 >gi|1545|lcl|protein:vir:100880 Length: 630 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1473 # MgeName: Lc-Nu # Cross-refs: genbank:acc:YP_358760;genbank:gi:78000026;genbank:GeneID :3726151 Length = 630 Score = 199 bits (505), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 168/569 (29%), Positives = 287/569 (50%), Gaps = 37/569 (6%) Query: 12 RLITSKAVNLAVKRHQEDLKRT---DWRWHYDPNLAGKAVKFMEILPEP--KSGKPQPLA 66 + +T + V LA RH DL R D+ + Y ++ F +LP P S K QP Sbjct: 47 KYMTGRDVQLACIRHLNDLLRIGNDDFPYQYSSDMVNAIEYFSRLLPNPDDTSKKIQPFK 106 Query: 67 PFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGVI-LYEFLFGKNPANKR 125 +Q FI+ S+ GW D N RFT IS+AR+ GK+ L S +I Y F+ N A + Sbjct: 107 -WQSFILDSLIGWRTVD--NGTRFTTSNISIARQQGKTWLASILINFYYFVVCWN-ATSQ 162 Query: 126 QLYTAANDRKQAGIVFGMVKDRLRALMR----KDPGIKRMVKITRDELVNLDDGSTIRSF 181 L A+ D + A +F V + + ++ D +R V+ +++ + +TIR Sbjct: 163 DLLVASYDSEHATKLFNDVSLQAKTILSLPEFADDARERGVEAQTTQVIAKNTKNTIRKG 222 Query: 182 SRDTGLVDGYEPHVAVVDEYANAK--TTDMIETLASGQVLLPSYLTFIISTAGFDMNVPM 239 + G D + +AV DE N + + ++ + SGQ + + + ISTA D+ V Sbjct: 223 TSQGGGFDSFHNAIAVYDEIGNLRPALNETLKQITSGQNGIKNRMFVKISTAYPDIKVK- 281 Query: 240 FQQNYPYAKKVLSGE--EKAERYFAFIAEQDNVQEVDDPNSWIKSNP-LLDVDTLHSQIS 296 F+ + + + + A+ F I QD+ EV +P +W KSNP LL+ L Sbjct: 282 FKNDEDVTRAAIEHDAVRDADNVFQVIYSQDSEDEVFEPETWAKSNPNLLE---LPKSKR 338 Query: 297 DYLTTKLAQARAD----GSLNAKLVKNFNIWRQATEDSYLDFDAWKAAELTDKPDIRGQR 352 D L L Q R D G+L + K+ N+W + ++SYL D + + + D+ D+ G+ Sbjct: 339 DNLQNALNQDRNDNEREGTLETFVNKSLNLWSRRFQNSYLSLDNIQRS-IIDRFDVNGRD 397 Query: 353 AWIGIDVGRTSDLFAISWLIP----QEGWWWLDGYAFV--ASKGGIDNKIKTDRIDYLAA 406 +IG D +T+D + ++ P + + + ++F+ A I+ K K D +DYL Sbjct: 398 VFIGFDGSQTNDNTSFGFIYPYTDHDKHMFHVQQHSFIPFAQAKTIEAKSKQDGLDYLKL 457 Query: 407 EQHGEGEISSLESGIIDNDRVYEWLEDFIERNDIDVQGIMYDPYQFGPMLTAIEKNHPEW 466 + G +I++L SG+I+ D+VY+WL D++ ++ + V+ I+ DP + +E P+W Sbjct: 458 QDEGFVDITNLASGVINTDQVYQWLVDYVNQHRLKVKFIIADPNHGEWLEKKLEHYQPQW 517 Query: 467 PMVQVRQGTLTLSMPTKQFRDDVIGGRIKHSDNRIMQAAAMNAVLMSDNNG-VRINK-NK 524 + + L+ PTK F++ I G I ++ ++ NAVL+ D G V+I++ N+ Sbjct: 518 QWFPLPPTSFKLNEPTKDFQNLFINGNISMLNDPLLIDGLNNAVLVEDRGGSVKIDRQNR 577 Query: 525 YANKIDMIDATLDAYAIAFKEDLDNYLDD 553 ++ ID DA ++A+A A K +NY D+ Sbjct: 578 TSDHIDTTDALINAHAQA-KFYFENYHDE 605 >gi|3997|lcl|protein:vir:100199 Length: 629 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1524 # MgeName: phi AT3 # Cross-refs: genbank:acc:YP_025027;genbank:gi:48697260;genbank:GeneID :2948297 Length = 629 Score = 197 bits (501), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 164/572 (28%), Positives = 286/572 (50%), Gaps = 35/572 (6%) Query: 8 VLDGRLITSKAVNLAVKRHQEDLKRT---DWRWHYDPNLAGKAVKFMEILPEP--KSGKP 62 + + +T + V LA RH DL R D+ + Y+ ++ F +LP P S K Sbjct: 42 MFTNKYMTGRDVQLACIRHLNDLLRIGNDDFPYQYNSDMVNAIEYFSRLLPNPDDTSKKI 101 Query: 63 QPLAPFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGVILYEFLFGKNPA 122 QP +Q FI+ S+ GW D N RFT IS+AR+ GK+ L S +I + + A Sbjct: 102 QPFK-WQSFILDSLIGWRTID--NGTRFTTSNISIARQQGKTWLASILINFYYFVVCWNA 158 Query: 123 NKRQLYTAANDRKQAGIVFGMVKDRLRALMR----KDPGIKRMVKITRDELVNLDDGSTI 178 + L A+ D + A +F V + + ++ D +R V+ +++ + +TI Sbjct: 159 TSQDLLVASYDSEHATKLFNDVSLQAKTILSLPDFADDARERGVEAQTTQVIAKNTKNTI 218 Query: 179 RSFSRDTGLVDGYEPHVAVVDEYANAK--TTDMIETLASGQVLLPSYLTFIISTAGFDMN 236 R + G D + +AV DE N + + ++ + SGQ + + + ISTA D+ Sbjct: 219 RKGTSQGGGFDSFHNAIAVYDEIGNLRPALNETLKQITSGQNGIKNRMFVKISTAYPDIK 278 Query: 237 VPMFQQNYPYAKKVLSGE--EKAERYFAFIAEQDNVQEVDDPNSWIKSNP-LLDVDTLHS 293 V F+ + + + + A+ F I QD+ EV +P +W KSNP LL+ L Sbjct: 279 VK-FKNDEDVTRAAIEHDAVRDADNVFQVIYAQDSEDEVFEPETWAKSNPNLLE---LQK 334 Query: 294 QISDYLTTKLAQARAD----GSLNAKLVKNFNIWRQATEDSYLDFDAWKAAELTDKPDIR 349 D L L Q R D G+L + K+ N+W + ++SYL D + + + D D+ Sbjct: 335 SKRDNLQKALNQDRNDNEREGTLETFVNKSLNLWSRRFQNSYLSLDNIQRS-IIDHFDVN 393 Query: 350 GQRAWIGIDVGRTSDLFAISWLIP----QEGWWWLDGYAFV--ASKGGIDNKIKTDRIDY 403 G+ +IG D +T+D + ++ P + + + ++F+ A I+ K K D +DY Sbjct: 394 GRDVFIGFDGSQTNDNTSFGFIYPYTDHDKHMFHVQQHSFIPFAQAKTIEAKSKQDGLDY 453 Query: 404 LAAEQHGEGEISSLESGIIDNDRVYEWLEDFIERNDIDVQGIMYDPYQFGPMLTAIEKNH 463 L + G +I++L SG+I+ ++VY+WL D++ ++ + V+ I+ DP + +E Sbjct: 454 LKLQDEGFVDITNLASGVINTEQVYQWLVDYVNQHRLKVKFIIADPNHGEWLEKKLEHYQ 513 Query: 464 PEWPMVQVRQGTLTLSMPTKQFRDDVIGGRIKHSDNRIMQAAAMNAVLMSDNNG-VRINK 522 P+W + + L+ PTK F++ I G I ++ ++ NAVL+ D G V+I++ Sbjct: 514 PQWQWFPLPPTSFKLNEPTKDFQNLFINGNITMLNDPLLIDGLNNAVLVEDRGGSVKIDR 573 Query: 523 -NKYANKIDMIDATLDAYAIAFKEDLDNYLDD 553 N+ ++ ID DA ++A+A A K +NY D+ Sbjct: 574 QNRTSDHIDTTDALINAHAQA-KFYFENYHDE 604 >gi|2959|lcl|protein:vir:102079 Length: 565 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1503 # MgeName: Fah # Cross-refs: genbank:acc:YP_512312;genbank:gi:89152481;genbank:GeneID :3953072 Length = 565 Score = 192 bits (487), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 162/558 (29%), Positives = 278/558 (49%), Gaps = 46/558 (8%) Query: 4 FIKRVLDGRLITSKAVNLAVKRH---QEDLKRTDWRWHYDPNLA------GKAVKFMEIL 54 + + +L+G++ + K A++R E+ + D +++D +A K K +E + Sbjct: 11 YCEDILNGKINSCKKHRWAIERFIRDYEECQSEDSPFYFDGEIAEDFYWFAKEFKHVEGI 70 Query: 55 PEPKSGKPQPLAPFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGVILYE 114 +G+ L FQ F+ +I+G+ K + RRF VFI +ARKN KS ++ V + Sbjct: 71 L---AGESVELTDFQLFLAANIFGF-KKKINGARRFRKVFIQLARKNAKSQFLAIVAAFC 126 Query: 115 FLFGKNPANKRQLYTAANDRKQAGIVFGMVKDRLRALMRKDPGIKRMVKITRDELVNLDD 174 G K++ Y A R Q+ V+ VK + + ++ K + + Sbjct: 127 TFLGDE---KQRAYIAGWTRDQSSEVYEAVKTGISS----SELLEGKWKEAYSTIEIFKN 179 Query: 175 GSTIRSFS---RDTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTA 231 GS + S R TG DG P + +VDEY +T ++ + L+SG V L FII+TA Sbjct: 180 GSVVVPLSKEARKTG--DGKNPSLGIVDEYHAHETDEIYDVLSSGMVARKEPLMFIITTA 237 Query: 232 GFDMNVPMFQQNYPYAKKVLSGEEKAER--YFAFIAEQDNVQEVDDPNSWIKSNPLLDV- 288 GFD++ P +++ Y Y +L + E YF I E + ++ D ++WIK+NP++ Sbjct: 238 GFDLSRPCYRE-YEYVSDILDPSKNVENDDYFVMICELEKNDDIKDESNWIKANPIVATY 296 Query: 289 -DTLHSQISDYLTTKLAQARADGSLNAKLVKNFNIWRQATEDSYLDFDAWKAAELTDKPD 347 + L SD K+A R + + A L KN NIW ++ Y+D W+ E+ D D Sbjct: 297 EEGLEGIRSD---LKVALDRPE-KMRAFLTKNMNIWVDKKDNGYMDMSKWQKCEV-DTLD 351 Query: 348 IRGQRAWIGIDVGRTSDLFAISWL-IPQEGWWWLDGYAFVASKGGIDNKIKTDRIDY-LA 405 G WIG D+ T+DL ++ W+ + EG + + ++F+ + + K+ D++ Y L Sbjct: 352 FSGATLWIGGDLSMTTDLTSVGWVGMDDEGDFIVGQHSFMP-EARLKEKMAIDKVRYDLW 410 Query: 406 AEQHGEGEISSLESGIIDNDRVYEWLEDFIERNDIDVQGIMYDPYQFGPMLTAIEKNHPE 465 AEQ G ++ ++D V W+E+F D ++Q YD + + +E + Sbjct: 411 AEQ---GYLTLTPGEMVDYTIVESWIENF--SKDKEIQEFDYDKWNALHLAQNLE--NKG 463 Query: 466 WPMVQVRQGTLTLSMPTKQFRDDVIGGRIKHSDNRIMQAAAMNAVL-MSDNNGVRINKNK 524 + V++ Q LS+PTK FR+ V ++KH+ + ++ A NAV+ M D + I+K Sbjct: 464 FVCVEIPQRIANLSIPTKNFREKVYEKKVKHNGDPVLFWALNNAVVKMDDQENIMISKKI 523 Query: 525 YANKIDMIDATLDAYAIA 542 N+ID A L+A+A A Sbjct: 524 SKNRIDPAAAVLNAFARA 541 >gi|2370|lcl|protein:vir:105001 Length: 565 # NCBI annotation: putative phage terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1490 # MgeName: W Beta # Cross-refs: genbank:acc:YP_459966;genbank:gi:85701381;genbank:GeneID :3882142 Length = 565 Score = 191 bits (486), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 162/558 (29%), Positives = 278/558 (49%), Gaps = 46/558 (8%) Query: 4 FIKRVLDGRLITSKAVNLAVKRH---QEDLKRTDWRWHYDPNLA------GKAVKFMEIL 54 + + +L+G++ + K A++R E+ + D +++D +A K K +E + Sbjct: 11 YCEDILNGKINSCKKHRWAIERFIRDYEECQSEDSPFYFDGEIAEDFYWFAKEFKHVEGI 70 Query: 55 PEPKSGKPQPLAPFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGVILYE 114 +G+ L FQ F+ +I+G+ K + RRF VFI +ARKN KS ++ V + Sbjct: 71 L---AGESVELTDFQLFLAANIFGF-KKKINGARRFRKVFIQLARKNAKSQFLAIVAAFC 126 Query: 115 FLFGKNPANKRQLYTAANDRKQAGIVFGMVKDRLRALMRKDPGIKRMVKITRDELVNLDD 174 G K++ Y A R Q+ V+ VK + + ++ K + + Sbjct: 127 TFLGDE---KQRAYIAGWTRDQSSEVYEAVKTGISS----SELLEGKWKEAYSTIEIFKN 179 Query: 175 GSTIRSFS---RDTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTA 231 GS + S R TG DG P + +VDEY +T ++ + L+SG V L FII+TA Sbjct: 180 GSVVVPLSKEARKTG--DGKNPSLGIVDEYHAHETDEIYDVLSSGMVARKEPLMFIITTA 237 Query: 232 GFDMNVPMFQQNYPYAKKVLSGEEKAER--YFAFIAEQDNVQEVDDPNSWIKSNPLLDV- 288 GFD++ P +++ Y Y +L + E YF I E + ++ D ++WIK+NP++ Sbjct: 238 GFDLSRPCYRE-YEYVSDILDPSKNVENDDYFVMICELEKNDDIKDESNWIKANPIVATY 296 Query: 289 -DTLHSQISDYLTTKLAQARADGSLNAKLVKNFNIWRQATEDSYLDFDAWKAAELTDKPD 347 + L SD K+A R + + A L KN NIW ++ Y+D W+ E+ D D Sbjct: 297 EEGLEGIRSD---LKVALDRPE-KMRAFLTKNMNIWVDKKDNGYMDMSKWQKCEV-DTFD 351 Query: 348 IRGQRAWIGIDVGRTSDLFAISWL-IPQEGWWWLDGYAFVASKGGIDNKIKTDRIDY-LA 405 G WIG D+ T+DL ++ W+ + EG + + ++F+ + + K+ D++ Y L Sbjct: 352 FSGATLWIGGDLSMTTDLTSVGWVGMDDEGDFIVGQHSFMP-EARLKEKMAIDKVRYDLW 410 Query: 406 AEQHGEGEISSLESGIIDNDRVYEWLEDFIERNDIDVQGIMYDPYQFGPMLTAIEKNHPE 465 AEQ G ++ ++D V W+E+F D ++Q YD + + +E + Sbjct: 411 AEQ---GYLTLTPGEMVDYTIVESWIENF--SKDKEIQEFDYDKWNALHLAQNLE--NKG 463 Query: 466 WPMVQVRQGTLTLSMPTKQFRDDVIGGRIKHSDNRIMQAAAMNAVL-MSDNNGVRINKNK 524 + V++ Q LS+PTK FR+ V ++KH+ + ++ A NAV+ M D + I+K Sbjct: 464 FVCVEIPQRIANLSIPTKNFREKVYEKKVKHNGDPVLFWALNNAVVKMDDQENIMISKKI 523 Query: 525 YANKIDMIDATLDAYAIA 542 N+ID A L+A+A A Sbjct: 524 SKNRIDPAAAVLNAFARA 541 >gi|17128|lcl|protein:vir:1379 Length: 581 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612831;genbank:gi:20065965;genbank:GeneID :935781 Length = 581 Score = 191 bits (485), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 164/574 (28%), Positives = 276/574 (48%), Gaps = 44/574 (7%) Query: 8 VLDGRLITSKAVNLAVKRHQEDLKRT---DWRWHYDPNLAGKAVKFMEILPEPK---SGK 61 +LDG++ K A KR DL+R D+ +++D A + VK+ K GK Sbjct: 16 ILDGKINACKRHKQACKRFLNDLERMESDDFEYYWDEEEAQRIVKWYGHCRHSKGVLEGK 75 Query: 62 PQPLAPFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGVILYEFLFGKNP 121 P L + KF++ +I W KD +N RRF FI +ARKN KS L +G+ YE G Sbjct: 76 PIILNSWAKFVVCNIEAWKHKD-TNYRRFRFAFIQVARKNQKSQLEAGMAGYEI--GAKG 132 Query: 122 ANKRQLYTAANDRKQAGIVFGMVKDRLRALMRKDPGIKRMVKITRDELVNLDDGSTIRSF 181 N ++YT +R QA IVF + LM P +K+ K T+ + + S I+ Sbjct: 133 YNAAEVYTLGVERDQAKIVFEEWE-----LMASKP-LKKRFKFTQKVIKHKKSNSFIKHL 186 Query: 182 SRDTGLV-DGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTAGFDMNVPMF 240 S+ G DG P +AV+DEY + M + + SG + L II+TAG D Sbjct: 187 SKKAGKTGDGKNPQMAVIDEYHAHPNSKMYDVMKSGMMARTEPLLVIITTAGEDYEETAC 246 Query: 241 QQNYPYAKKVLSGEEKAERYFAFIAEQDNVQEVDDPNSWIKSNPLL-----DVDTLHSQI 295 Y +L G + E+YF I E ++ + D +WIK+NP+L ++++ Sbjct: 247 YYEYLDCCSILDGTFENEKYFVMICELEDEDDPFDEKAWIKANPVLCTYEEGIESMRQNA 306 Query: 296 SDYLTTKLAQARADGSLNAKLVKNFNIWRQATEDSYLDFDAWKAA-ELTDKPDIRGQRAW 354 + T + R + L KN NI+ A E Y+D + WKA E RG + Sbjct: 307 NLAKNTSNEEKRIEF-----LTKNCNIYVAAGEKKYVDVEFWKACKENITLEKFRGHDCY 361 Query: 355 IGIDVGRTSDLFAISWLIP--QEGW--WWLDGYAFVASKGGIDNKIKTDRIDYLAAEQHG 410 IG+D+ ++ DL +I++ P EG + L G +F+ ++ + K+KTD + Y Sbjct: 362 IGMDLSKSGDLTSIAFEFPYLDEGIRKYALFGKSFIPAE-VVKEKMKTDNVPYNIWSSKE 420 Query: 411 EG---EISSLESGIIDNDRVYEWLEDFIERNDIDVQGIMYDPYQFGPMLTAIEKNHPEWP 467 +G + + E I+D + +E ++ +++V + YDP+ +++ +E+ ++ Sbjct: 421 KGWLIKTEANEGQIVDLWAILNTIESIVKEYELNVIEVSYDPHGAAMLVSELERR--DYN 478 Query: 468 MVQVRQGTLTLSMPTKQFRDDVIGGRIKHSDNRIMQAAAMNAVLMSDNNG-VRINKNKYA 526 V+ Q L+ T FRD + +I H +N +M NA +++ G ++I+K Sbjct: 479 CVECGQSCAKLNEATVNFRDLMKIKQIVHDENNLMTWCVQNAEKDTNSFGEIKISKKSRF 538 Query: 527 NKIDMIDATLDAYAIAF----KEDLD--NYLDDD 554 +ID + + + A+ A +E+LD + D+D Sbjct: 539 KRIDPLASCIFAHNRAMTYWNRENLDVSEFADED 572 >gi|2423|lcl|protein:vir:107576 Length: 565 # NCBI annotation: phage terminase, large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1491 # MgeName: Gamma # Cross-refs: genbank:acc:YP_338185;genbank:gi:77020155;genbank:GeneID :3703707 Length = 565 Score = 191 bits (484), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 161/558 (28%), Positives = 278/558 (49%), Gaps = 46/558 (8%) Query: 4 FIKRVLDGRLITSKAVNLAVKRH---QEDLKRTDWRWHYDPNLA------GKAVKFMEIL 54 + + +L+G++ + K A++R E+ + D +++D +A K K +E + Sbjct: 11 YCEDILNGKINSCKKHRWAIERFIRDYEECQSEDSPFYFDGEIAEDFYWFAKEFKHVEGI 70 Query: 55 PEPKSGKPQPLAPFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGVILYE 114 +G+ L FQ F+ +I+G+ K + RRF VFI +ARKN KS ++ V + Sbjct: 71 L---AGESVELTDFQLFLAANIFGF-KKKINGARRFRKVFIQLARKNAKSQFLAIVAAFC 126 Query: 115 FLFGKNPANKRQLYTAANDRKQAGIVFGMVKDRLRALMRKDPGIKRMVKITRDELVNLDD 174 G K++ Y A R Q+ V+ VK + + ++ K + + Sbjct: 127 TFLGDE---KQRAYIAGWTRDQSSEVYEAVKTGISS----SELLEGKWKEAYSTIEIFKN 179 Query: 175 GSTIRSFS---RDTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTA 231 GS + S R TG DG P + +VDEY +T ++ + L+SG V L FII+TA Sbjct: 180 GSVVVPLSKEARKTG--DGKNPSLGIVDEYHAHETDEIYDVLSSGMVARKEPLMFIITTA 237 Query: 232 GFDMNVPMFQQNYPYAKKVLSGEEKAER--YFAFIAEQDNVQEVDDPNSWIKSNPLLDV- 288 GFD++ P +++ Y Y +L + E YF I E + ++ D ++WIK+NP++ Sbjct: 238 GFDLSRPCYRE-YEYVSDILDPSKNVENDDYFVMICELEKNDDIKDESNWIKANPIVATY 296 Query: 289 -DTLHSQISDYLTTKLAQARADGSLNAKLVKNFNIWRQATEDSYLDFDAWKAAELTDKPD 347 + L SD K+A R + + A L KN NIW ++ Y+D W+ E+ D D Sbjct: 297 EEGLEGIRSD---LKVALDRPE-KMRAFLTKNMNIWVDKKDNGYMDMSKWQKCEV-DTFD 351 Query: 348 IRGQRAWIGIDVGRTSDLFAISWL-IPQEGWWWLDGYAFVASKGGIDNKIKTDRIDY-LA 405 G WIG D+ T+DL ++ W+ + EG + + ++F+ + + K+ D++ Y L Sbjct: 352 FSGATLWIGGDLSMTTDLTSVGWVGMDDEGDFIVGQHSFMP-EARLKEKMAIDKVRYDLW 410 Query: 406 AEQHGEGEISSLESGIIDNDRVYEWLEDFIERNDIDVQGIMYDPYQFGPMLTAIEKNHPE 465 AEQ G ++ ++D V W+E+F D ++Q YD + + +E + Sbjct: 411 AEQ---GYLTLTPGEMVDYTIVESWIENF--SKDKEIQEFDYDKWNALHLAQNLE--NKG 463 Query: 466 WPMVQVRQGTLTLSMPTKQFRDDVIGGRIKHSDNRIMQAAAMNAVL-MSDNNGVRINKNK 524 + V++ Q LS+PTK FR+ V ++KH+ + ++ A NAV+ M D + I+K Sbjct: 464 FVCVEIPQRIANLSIPTKNFREKVYEKKVKHNGDPVLFWALNNAVVKMDDQENIMISKKI 523 Query: 525 YANKIDMIDATLDAYAIA 542 N+ID A L+A++ A Sbjct: 524 SKNRIDPAAAVLNAFSRA 541 >gi|2476|lcl|protein:vir:102883 Length: 565 # NCBI annotation: phage terminase, large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1492 # MgeName: Cherry # Cross-refs: genbank:acc:YP_338134;genbank:gi:77020208;genbank:GeneID :3703792 Length = 565 Score = 190 bits (483), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 161/558 (28%), Positives = 277/558 (49%), Gaps = 46/558 (8%) Query: 4 FIKRVLDGRLITSKAVNLAVKRH---QEDLKRTDWRWHYDPNLA------GKAVKFMEIL 54 + + +L+G++ + K A++R E+ + D +++D +A K K +E + Sbjct: 11 YCEDILNGKINSCKKHRWAIERFIRDYEECQSEDSPFYFDGEIAEDFYWFAKEFKHVEGI 70 Query: 55 PEPKSGKPQPLAPFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGVILYE 114 +G+ L FQ F+ +I+G+ K + RRF VFI +ARKN KS ++ V + Sbjct: 71 L---AGESVELTDFQLFLAANIFGF-KKKINGARRFRKVFIQLARKNAKSQFLAIVAAFC 126 Query: 115 FLFGKNPANKRQLYTAANDRKQAGIVFGMVKDRLRALMRKDPGIKRMVKITRDELVNLDD 174 G K++ Y A R Q+ V+ VK + + ++ K + + Sbjct: 127 TFLGDE---KQRAYIAGWTRDQSSEVYEAVKTGISS----SELLEGKWKEAYSTIEIFKN 179 Query: 175 GSTIRSFS---RDTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTA 231 GS + S R TG DG P + +VDEY +T ++ + L+SG V L FII+TA Sbjct: 180 GSVVVPLSKEARKTG--DGKNPSLGIVDEYHAHETDEIYDVLSSGMVARKEPLMFIITTA 237 Query: 232 GFDMNVPMFQQNYPYAKKVLSGEEKAER--YFAFIAEQDNVQEVDDPNSWIKSNPLLDV- 288 GFD++ P +++ Y Y +L + E YF I E + ++ D ++WIK+NP++ Sbjct: 238 GFDLSRPCYRE-YEYVSDILDPSKNVENDDYFVMICELEKNDDIKDESNWIKANPIVATY 296 Query: 289 -DTLHSQISDYLTTKLAQARADGSLNAKLVKNFNIWRQATEDSYLDFDAWKAAELTDKPD 347 + L SD K+A R + + A L KN NIW ++ Y+D W+ E+ D D Sbjct: 297 EEGLEGIRSD---LKVALDRPE-KMRAFLTKNMNIWVDKKDNGYMDMSKWQKCEV-DTXD 351 Query: 348 IRGQRAWIGIDVGRTSDLFAISWL-IPQEGWWWLDGYAFVASKGGIDNKIKTDRIDY-LA 405 G WIG D+ T+DL ++ W+ + EG + + ++F+ + + K+ D++ Y L Sbjct: 352 FSGATLWIGGDLSMTTDLTSVGWVGMDDEGDFIVGQHSFMP-EARLKEKMAIDKVRYDLW 410 Query: 406 AEQHGEGEISSLESGIIDNDRVYEWLEDFIERNDIDVQGIMYDPYQFGPMLTAIEKNHPE 465 AEQ G ++ ++D V W+E+F D ++Q YD + + +E + Sbjct: 411 AEQ---GYLTLTPGEMVDYTIVESWIENF--SKDKEIQEFDYDKWNALHLAQNLE--NKG 463 Query: 466 WPMVQVRQGTLTLSMPTKQFRDDVIGGRIKHSDNRIMQAAAMNAVL-MSDNNGVRINKNK 524 + V++ Q LS+PTK FR+ V ++KH+ + ++ A NAV+ M D + I+K Sbjct: 464 FVCVEIPQRIANLSIPTKNFREKVYEKKVKHNGDPVLFWALNNAVVKMDDQENIMISKKI 523 Query: 525 YANKIDMIDATLDAYAIA 542 N+ID A L+A+ A Sbjct: 524 SKNRIDPAAAVLNAFXRA 541 >gi|1289|lcl|protein:vir:105086 Length: 569 # NCBI annotation: putative large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1465 # MgeName: phiKO2 # Cross-refs: genbank:acc:YP_006582;genbank:gi:46402088;genbank:GeneID :2777952 Length = 569 Score = 175 bits (444), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 160/565 (28%), Positives = 257/565 (45%), Gaps = 51/565 (9%) Query: 4 FIKRVLDGRLITSKAVNLAVKRHQEDLKRT---DWRWHYDPNLAGKAVKFMEILPEPK-- 58 + + ++DG+++ + + LA +RH +DLK++ ++ + +D +LA +A KF+++LP Sbjct: 13 YARDIVDGKIVACRFIRLACQRHFDDLKKSLDKNYPYKFDRDLAERACKFVQLLPHSSGE 72 Query: 59 -SGKPQPLAPFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGVILYEFLF 117 +G+ L P+Q FI SI+GWV K D RRF + +I +ARKNGKS +GV +Y F Sbjct: 73 LAGQKLKLEPWQSFIFCSIFGWVTKKDKK-RRFREAYIRVARKNGKSFFAAGVGIYTFCA 131 Query: 118 -GKNPANKRQLYTAANDRKQAGIVFGMVKDRLRALMRKDPGIKRMVKIT--RDELVNLDD 174 G+N A ++Y A QA VF R + + P ++ I+ D L D Sbjct: 132 DGENSA---EVYCGATTMAQAKKVFTPA----RQMASRLPALRSRFDISVWTDSLTR-PD 183 Query: 175 GSTIRSFSRDTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTAGFD 234 GS + G DG PH A++DEY T M E + G LT II+TAG Sbjct: 184 GSVFAPMAGKPG--DGDSPHCAIIDEYHEHDTDHMYEAMTMGMGARSQPLTLIITTAGSS 241 Query: 235 MNVPMFQQNYPYAKKVLSGEEKAERYFAFIAEQDNVQEVDDPNSWIKSNPLLDVDTLHSQ 294 + P + ++ K+ + G ER F I E D + DP + IK+NP L+V +S Sbjct: 242 LESPCYDKDKE-VKEAIEGITCNERLFGMIYELDVGDDWTDPKNLIKANPNLNVSVKYSD 300 Query: 295 ISDYLTTKLAQARADGSLNAKLVKNFNIWRQATEDSYLDFDAWKAAELTDK----PDIRG 350 + + L R +NA K NIW + ++ + + WKAAE DK D Sbjct: 301 LVELLEVAKQVPR---KVNAFKTKRLNIWVSG-KSAFYNMEQWKAAE--DKNLKLEDFAN 354 Query: 351 QRAWIGIDVGRTSDLFAISWLIPQEGWWWLDG---YAFVASKGGI--DNKIKTDRIDYLA 405 +G+D+ + D+ A L +E ++G Y + K + D TD Sbjct: 355 DTCNVGLDLAKKLDMNAGIRLFTRE----IEGKRHYYCIKPKFWVPEDTIHTTDPKLLKT 410 Query: 406 AEQHGE----GEISSLESGIIDNDRVYEWLEDFIERNDIDVQGIMYDPYQFGPMLTAIEK 461 A+++ + G + + + D + + D N ID I DP + +E Sbjct: 411 ADRYQKFYEMGALEATDGAEADYREILASILDMQGENRIDEIDI--DPAGATALRHQLED 468 Query: 462 NHPEWPMVQVRQGTLTLSMPTKQFRDDVIGGRIKHSDNRIMQAAAMNAV---LMSDNNGV 518 + +V +RQ +S K+ + GGR H N I+ N + + ++ V Sbjct: 469 YG--FTVVDIRQDYTNMSPAMKELEAALAGGRFHHDGNPILTWCISNVIGKFIPGSDDLV 526 Query: 519 RINKNKYANKIDMIDATLDAYAIAF 543 R K +KID A +A A Sbjct: 527 RPTKGDNQSKIDGATALFNAMTRAM 551 >gi|986|lcl|protein:vir:5736 Length: 577 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:122 # MgeName: PY54 # Cross-refs: genbank:acc:NP_892047;genbank:gi:33770510;interpro:IPR00 5021;uniprot:Q7Y413;genbank:GeneID:1732947 Length = 577 Score = 167 bits (424), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 151/575 (26%), Positives = 250/575 (43%), Gaps = 51/575 (8%) Query: 4 FIKRVLDGRLITSKAVNLAVKRHQEDLKRT----DWRWHYDPNLAGKAVKFMEILPEPKS 59 + + +L G+++ K + LA +RH +DLK + ++ + +D +LA +A F+++LP Sbjct: 13 YARDILSGKILAGKYIKLACQRHLDDLKNSVNDKNYPYRFDRDLAERACCFVQLLPHSSG 72 Query: 60 ---GKPQPLAPFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGVILYEFL 116 G+ P+Q FI SI+GWV K RRF + +I + RKNGKS +G+ +Y + Sbjct: 73 DLKGQKLKAEPWQLFIFSSIFGWVTKKGKK-RRFKETYIRVGRKNGKSFFAAGIGMY--M 129 Query: 117 FGKNPANKRQLYTAANDRKQAGIVFGMVKDRLRALMRKDPGIKRMVKITR-DELVNLDDG 175 F + N ++Y A QA VF + L P ++ ++ E + +DG Sbjct: 130 FCADGENAAEVYCGATKMAQAKKVFTPASQMAKLL----PDLRSRFNVSVWAEKLTREDG 185 Query: 176 STIRSFSRDTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTAGFDM 235 S + G DG P A++DEY T + T+ +G LT II+TAG D+ Sbjct: 186 SVFAPVVGNPG--DGDSPSCAIIDEYHEHPTDILYSTMTTGMGARSQPLTLIITTAGKDI 243 Query: 236 NVPMFQQNYPYAKKVLSGEEKAERYFAFIAEQDNVQEVDDPNSWIKSNPLLDVDTLHSQI 295 P + ++ K+ L ER F I E D + DP + IK+NP L V + + Sbjct: 244 ESPCYDKDNE-VKQCLDKMLPNERLFGMIYELDALDNWQDPCNLIKANPNLGVSVFYEDL 302 Query: 296 SDYLTTKLAQARADGSLNAKLVKNFNIWRQATEDSYLDFDAWKAAELTDK----PDIRGQ 351 + L R + K+ N+W + ++ + D W AE DK + +G+ Sbjct: 303 VEKLHLAKTVPRMTNDIK---TKHLNMWVSG-KTAFFNMDHWAKAE--DKNLKLSNFKGE 356 Query: 352 RAWIGIDVGRTSDLFAISWLIPQEGWWWLDG---YAFVASK--------GGIDNKIKTDR 400 + +G+D+ DL A + +E ++G Y V SK ID KI Sbjct: 357 ESHLGLDLAAKLDLNAGVPVFTRE----IEGKRHYYCVGSKFWVPEDTVHSIDPKIAKTA 412 Query: 401 IDY---LAAEQHGEGEISSLESGIIDNDRVYEWLEDFIERNDIDVQGIMYDPYQFGPMLT 457 Y + + G ++ + D + + D ER+ + + I DP + Sbjct: 413 KRYQKWVNMQWAGGSLLNDTDGAEADYREILASVIDMTERDGVRIASIPIDPTGATALSH 472 Query: 458 AIEKNHPEWPMVQVRQGTLTLSMPTKQFRDDVIGGRIKHSDNRIMQAAAMNAV---LMSD 514 + N E + +RQ +S P K+ + GGR H N I+ N + + Sbjct: 473 ELADNGFE--PINIRQDFTNMSPPMKELEAALAGGRFHHDGNPILAWCISNVLGTFVPGS 530 Query: 515 NNGVRINKNKYANKIDMIDATLDAYAIAFKEDLDN 549 ++ VR K +KID A L A A D+ Sbjct: 531 DDRVRPTKGDKQSKIDGATALLMAIGRAMLHGQDS 565 >gi|19929|lcl|protein:vir:4852 Length: 369 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:106 # MgeName: DT1 # Cross-refs: genbank:acc:NP_049392;genbank:gi:9632420;genbank:GeneID: 1258503 Length = 369 Score = 164 bits (415), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 106/329 (32%), Positives = 177/329 (53%), Gaps = 12/329 (3%) Query: 220 LPSYLTFIISTAGFDMNVPMFQQNYPYAKKVLSGEEK--AERYFAFIAEQDNVQEVDDPN 277 +P+ ISTA + +VP F+++ ++ + ++ A+ Y + QDN+ EV P Sbjct: 1 MPNRQFIQISTAYPNPSVP-FREDQKILQQAMEDDDNRDADTYLCLVWSQDNLDEVFQPE 59 Query: 278 SWIKSNPLLDVDTLHSQISDYLTTKLAQARADGSLNAKLVKNFNIWRQATEDSYLDFDAW 337 +W KSNPLLD+++ + L K G+L VKN N W A +S+LD Sbjct: 60 TWAKSNPLLDLESERENLMKGLMDKRDSDLLSGNLADFQVKNMNCWLLADSNSFLDLKDI 119 Query: 338 KAAELTDKPDIRGQRAWIGIDVGRTSDLFAISWLIPQEGW-----WWLDGYAFVA--SKG 390 + A + + DIRG+R ++G+D SD AI ++ P G W ++ ++F+ G Sbjct: 120 ENAVIPEF-DIRGKRVYVGLDASMFSDNTAIGFVYPYVGEDGSQKWHIEQHSFIPWQQAG 178 Query: 391 GIDNKIKTDRIDYLAAEQHGEGEISSLESGIIDNDRVYEWLEDFIERNDIDVQGIMYDPY 450 ++ K++ D ++Y EQ G I+S G+I+ + VY W D++E N +DV YD Sbjct: 179 SLEAKMEQDGVNYRDLEQKGYCTITSHPQGLINPEEVYRWFIDYVEDNQLDVVFFGYDAM 238 Query: 451 QFGPMLTAIEKNHPEWPMVQVRQGTLTLSMPTKQFRDDVIGGRIKHSDNRIMQAAAMNAV 510 ++ ++E N +P++ +RQ T L PTK + I G I D+ IM+ A +NAV Sbjct: 239 MTDKIIKSLESN-TNFPLMPIRQRTSELKDPTKFLQTLFIEGNITRLDDEIMRKALINAV 297 Query: 511 LMSDNNGVRINKNKYANKIDMIDATLDAY 539 + DN G++++K K KID++DA +DA+ Sbjct: 298 IKEDNIGIQVDKMKSTYKIDVVDAIIDAF 326 >gi|2221|lcl|protein:vir:93883 Length: 563 # NCBI annotation: ORF005 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1485 # MgeName: 3A # Cross-refs: genbank:acc:YP_239935;genbank:gi:66395593;genbank:GeneID :5130949 Length = 563 Score = 157 bits (397), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 154/547 (28%), Positives = 260/547 (47%), Gaps = 36/547 (6%) Query: 4 FIKRVLDGRLITSKAVNLAVKRHQEDLKRTDWRWHYDPNLAGKAVKFMEILPEPKSGKPQ 63 + ++V G++ TSK V +RH L+ +W +D LA + ++F+E +P G + Sbjct: 18 YAEQVTQGKIKTSKYVRKECERHLRYLENGG-KWVFDEELAHRPIRFIEKFCKPSKGSKR 76 Query: 64 PLA--PFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGVILYEFLFGKNP 121 L P+Q FIIGS++GWV K+ + +RRF + I M RKNGK+ ISGV Y ++ Sbjct: 77 QLVLQPWQHFIIGSLFGWVHKE-TKLRRFKEALIFMGRKNGKTTTISGVANYA--VSQDG 133 Query: 122 ANKRQLYTAANDRKQAGIVFGMVKDRLRALMRKDPGIKRMVKITRDELVNLDDGSTIRSF 181 N +++ AN KQA I+F D +A+++ P + + + RDE+ S I Sbjct: 134 ENGAEIHLLANVMKQARILF----DESKAMIKASPKLDKNFRTLRDEIHYDATISKIMPQ 189 Query: 182 SRDTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTAGFDMNVPMFQ 241 + D+ +DG H+ + DE K +I + + + L I+TAG+ ++ P+ Sbjct: 190 ASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITTAGYQLDGPLVD 249 Query: 242 QNYPYAKKVLSGEEKAERYFAFIAEQDNVQEVDDPNSWIKSNPLLDVD-TLHSQISDYLT 300 + L + ER F ++A D+ +++D ++WIK+NP L V L ++ Sbjct: 250 M-VEAGRDTLDQIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGVSINLDEMKEEWEK 308 Query: 301 TKLAQA-RADGSLNAKLVKNFNIWRQATEDSYLDFDAW-KAAELTDKPDIRGQRAWIGID 358 K A R D + K FNI+ E S++D+ K E+ ++ G+ IG D Sbjct: 309 AKRTPAERGDF-----ITKRFNIFANNDEMSFIDYPTLQKNNEIVSLEELEGRPCTIGYD 363 Query: 359 VGRTSDLFAISWLIPQEGWWWLDGYAFVASKGGI-DNKIK--TDRIDYLAAEQHGEGEIS 415 + T D A + +G V S I +K++ ++I Y E+ +G ++ Sbjct: 364 LSETEDFTAACATFALD-----NGKVAVLSHSWIPKHKVEYSNEKIPYREWEE--DGLLT 416 Query: 416 SLESGIIDNDRVYEWLEDFIERND-IDVQGIMYDPYQFGPMLTAIEKNHPEWPMVQVRQG 474 + ID V W+ I+ N+ V+ I YD + + KN+ + + RQG Sbjct: 417 VQDKPYIDYQDVLNWI---IKMNEHYVVEKITYDRANAFKLNQEL-KNYG-FETEETRQG 471 Query: 475 TLTLSMPTKQFRDDVIGGRIKHSDNRIMQAAAMNAVLMSDNNGVRI-NKNKYANKIDMID 533 LTLS K ++ + G+I ++N +M+ N L D NG + +K KID Sbjct: 472 ALTLSPALKDLKEMFLDGKIIFNNNPLMKWYINNVQLKLDRNGNWLPSKQSRYRKIDGFA 531 Query: 534 ATLDAYA 540 A L+ Y Sbjct: 532 AFLNTYT 538 >gi|11420|lcl|protein:vir:78630 Length: 563 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1855 # MgeName: tp310-2 # Cross-refs: genbank:acc:YP_001429940;genbank:gi:156603994;genbank:Ge neID:5525376 Length = 563 Score = 157 bits (397), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 154/547 (28%), Positives = 260/547 (47%), Gaps = 36/547 (6%) Query: 4 FIKRVLDGRLITSKAVNLAVKRHQEDLKRTDWRWHYDPNLAGKAVKFMEILPEPKSGKPQ 63 + ++V G++ TSK V +RH L+ +W +D LA + ++F+E +P G + Sbjct: 18 YAEQVTQGKIKTSKYVKKECERHLRYLENGG-KWVFDEELAHRPIRFIEKFCKPSKGSKR 76 Query: 64 PLA--PFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGVILYEFLFGKNP 121 L P+Q FIIGS++GWV K+ + +RRF + I M RKNGK+ ISGV Y ++ Sbjct: 77 QLVLQPWQHFIIGSLFGWVHKE-TKLRRFKEALIFMGRKNGKTTTISGVANYA--VSQDG 133 Query: 122 ANKRQLYTAANDRKQAGIVFGMVKDRLRALMRKDPGIKRMVKITRDELVNLDDGSTIRSF 181 N +++ AN KQA I+F D +A+++ P + + + RDE+ S I Sbjct: 134 ENGAEIHLLANVMKQARILF----DESKAMIKASPKLDKNFRTLRDEIHYDATISKIMPQ 189 Query: 182 SRDTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTAGFDMNVPMFQ 241 + D+ +DG H+ + DE K +I + + + L I+TAG+ ++ P+ Sbjct: 190 ASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITTAGYQLDGPLVD 249 Query: 242 QNYPYAKKVLSGEEKAERYFAFIAEQDNVQEVDDPNSWIKSNPLLDVD-TLHSQISDYLT 300 + L + ER F ++A D+ +++D ++WIK+NP L V L ++ Sbjct: 250 M-VEAGRDTLDQIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGVSINLDEMKEEWEK 308 Query: 301 TKLAQA-RADGSLNAKLVKNFNIWRQATEDSYLDFDAW-KAAELTDKPDIRGQRAWIGID 358 K A R D + K FNI+ E S++D+ K E+ ++ G+ IG D Sbjct: 309 AKRTPAERGDF-----ITKRFNIFANNDEMSFIDYPTLQKNNEIVSLEELEGRPCTIGYD 363 Query: 359 VGRTSDLFAISWLIPQEGWWWLDGYAFVASKGGI-DNKIK--TDRIDYLAAEQHGEGEIS 415 + T D A + +G V S I +K++ ++I Y E+ +G ++ Sbjct: 364 LSETEDFTAACATFALD-----NGKVAVLSHSWIPKHKVEYSNEKIPYREWEE--DGLLT 416 Query: 416 SLESGIIDNDRVYEWLEDFIERND-IDVQGIMYDPYQFGPMLTAIEKNHPEWPMVQVRQG 474 + ID V W+ I+ N+ V+ I YD + + KN+ + + RQG Sbjct: 417 VQDKPYIDYQDVLNWI---IKMNEHYVVEKITYDRANAFKLNQEL-KNYG-FETEETRQG 471 Query: 475 TLTLSMPTKQFRDDVIGGRIKHSDNRIMQAAAMNAVLMSDNNGVRI-NKNKYANKIDMID 533 LTLS K ++ + G+I ++N +M+ N L D NG + +K KID Sbjct: 472 ALTLSPALKDLKEMFLDGKIIFNNNPLMKWYINNVQLKLDRNGNWLPSKQSRYRKIDGFA 531 Query: 534 ATLDAYA 540 A L+ Y Sbjct: 532 AFLNTYT 538 >gi|3108|lcl|protein:vir:94427 Length: 563 # NCBI annotation: ORF005 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1506 # MgeName: 47 # Cross-refs: genbank:acc:YP_240002;genbank:gi:66395661;genbank:GeneID :5133087 Length = 563 Score = 157 bits (397), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 154/547 (28%), Positives = 260/547 (47%), Gaps = 36/547 (6%) Query: 4 FIKRVLDGRLITSKAVNLAVKRHQEDLKRTDWRWHYDPNLAGKAVKFMEILPEPKSGKPQ 63 + ++V G++ TSK V +RH L+ +W +D LA + ++F+E +P G + Sbjct: 18 YAEQVTQGKIKTSKYVKKECERHLRYLENGG-KWVFDEELAHRPIRFIEKFCKPSKGSKR 76 Query: 64 PLA--PFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGVILYEFLFGKNP 121 L P+Q FIIGS++GWV K+ + +RRF + I M RKNGK+ ISGV Y ++ Sbjct: 77 QLVLQPWQHFIIGSLFGWVHKE-TKLRRFKEALIFMGRKNGKTTTISGVANYA--VSQDG 133 Query: 122 ANKRQLYTAANDRKQAGIVFGMVKDRLRALMRKDPGIKRMVKITRDELVNLDDGSTIRSF 181 N +++ AN KQA I+F D +A+++ P + + + RDE+ S I Sbjct: 134 ENGAEIHLLANVMKQARILF----DESKAMIKASPKLDKNFRTLRDEIHYDATISKIMPQ 189 Query: 182 SRDTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTAGFDMNVPMFQ 241 + D+ +DG H+ + DE K +I + + + L I+TAG+ ++ P+ Sbjct: 190 ASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITTAGYQLDGPLVD 249 Query: 242 QNYPYAKKVLSGEEKAERYFAFIAEQDNVQEVDDPNSWIKSNPLLDVD-TLHSQISDYLT 300 + L + ER F ++A D+ +++D ++WIK+NP L V L ++ Sbjct: 250 M-VEAGRDTLDQIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGVSINLDEMKEEWEK 308 Query: 301 TKLAQA-RADGSLNAKLVKNFNIWRQATEDSYLDFDAW-KAAELTDKPDIRGQRAWIGID 358 K A R D + K FNI+ E S++D+ K E+ ++ G+ IG D Sbjct: 309 AKRTPAERGDF-----ITKRFNIFANNDEMSFIDYPTLQKNNEIVSLEELEGRPCTIGYD 363 Query: 359 VGRTSDLFAISWLIPQEGWWWLDGYAFVASKGGI-DNKIK--TDRIDYLAAEQHGEGEIS 415 + T D A + +G V S I +K++ ++I Y E+ +G ++ Sbjct: 364 LSETEDFTAACATFALD-----NGKVAVLSHSWIPKHKVEYSNEKIPYREWEE--DGLLT 416 Query: 416 SLESGIIDNDRVYEWLEDFIERND-IDVQGIMYDPYQFGPMLTAIEKNHPEWPMVQVRQG 474 + ID V W+ I+ N+ V+ I YD + + KN+ + + RQG Sbjct: 417 VQDKPYIDYQDVLNWI---IKMNEHYVVEKITYDRANAFKLNQEL-KNYG-FETEETRQG 471 Query: 475 TLTLSMPTKQFRDDVIGGRIKHSDNRIMQAAAMNAVLMSDNNGVRI-NKNKYANKIDMID 533 LTLS K ++ + G+I ++N +M+ N L D NG + +K KID Sbjct: 472 ALTLSPALKDLKEMFLDGKIIFNNNPLMKWYINNVQLKLDRNGNWLPSKQSRYRKIDGFA 531 Query: 534 ATLDAYA 540 A L+ Y Sbjct: 532 AFLNTYT 538 >gi|17412|lcl|protein:vir:2682 Length: 563 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:57 # MgeName: phiSLT # Cross-refs: genbank:acc:NP_075501;genbank:gi:12719430;genbank:GeneID :920187 Length = 563 Score = 154 bits (390), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 153/547 (27%), Positives = 260/547 (47%), Gaps = 36/547 (6%) Query: 4 FIKRVLDGRLITSKAVNLAVKRHQEDLKRTDWRWHYDPNLAGKAVKFMEILPEPKSGKPQ 63 + ++V G++ TSK V +RH L+ +W +D LA + ++F+E +P G + Sbjct: 18 YAEQVTQGKIKTSKYVKKECERHLRYLENGG-KWVFDEELAHRPIRFIEKFCKPSKGSKR 76 Query: 64 PLA--PFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGVILYEFLFGKNP 121 L P+Q FIIGS++GWV K+ + +RRF + I M RKNGK+ ISGV Y ++ Sbjct: 77 QLVLQPWQHFIIGSLFGWVHKE-TKLRRFKEALIFMGRKNGKTTTISGVANYA--VSQDG 133 Query: 122 ANKRQLYTAANDRKQAGIVFGMVKDRLRALMRKDPGIKRMVKITRDELVNLDDGSTIRSF 181 N +++ AN KQA I+F D +A+++ P ++ + RDE+ S I Sbjct: 134 ENGAEIHLLANVMKQARILF----DESKAMIKASPKLRENFRPLRDEIHYDATISKIMPQ 189 Query: 182 SRDTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTAGFDMNVPMFQ 241 + D+ +DG H+ + DE K +I + + + L I+TAG+ ++ P+ Sbjct: 190 ASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITTAGYQLDGPLVD 249 Query: 242 QNYPYAKKVLSGEEKAERYFAFIAEQDNVQEVDDPNSWIKSNPLLDVDT-LHSQISDYLT 300 + L + ER F ++A D+ +++D ++WIK+NP L V L ++ Sbjct: 250 M-VEAGRDTLDQIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGVSIDLDEMKEEWEK 308 Query: 301 TKLAQA-RADGSLNAKLVKNFNIWRQATEDSYLDFDAW-KAAELTDKPDIRGQRAWIGID 358 K A R D + K FNI+ E S++D+ K E+ ++ G+ IG D Sbjct: 309 AKRTPAERGDF-----ITKRFNIFANNDEMSFIDYPTLQKNNEIISLDELEGRPCTIGYD 363 Query: 359 VGRTSDLFAISWLIPQEGWWWLDGYAFVASKGGI-DNKIK--TDRIDYLAAEQHGEGEIS 415 + T D A + +G V + I +K++ ++I Y E+ +G ++ Sbjct: 364 LSETEDFTAACATFALD-----NGKVAVLTHSWIPKHKVEYSNEKIPYREWEE--DGLLT 416 Query: 416 SLESGIIDNDRVYEWLEDFIERND-IDVQGIMYDPYQFGPMLTAIEKNHPEWPMVQVRQG 474 + ID V W+ I+ N+ V+ I YD + + KN+ + + RQG Sbjct: 417 IQDKPYIDYQDVLNWI---IKMNEHYVVEKITYDRANAFKLNQEL-KNYG-FETEETRQG 471 Query: 475 TLTLSMPTKQFRDDVIGGRIKHSDNRIMQAAAMNAVLMSDNNGVRI-NKNKYANKIDMID 533 LTLS K ++ + G+I ++N +M+ N L D NG + +K KID Sbjct: 472 ALTLSPALKDLKEMFLDGKIIFNNNPLMKWYINNVQLKLDRNGNWLPSKQSRYRKIDGFA 531 Query: 534 ATLDAYA 540 A L+ Y Sbjct: 532 AFLNTYT 538 >gi|8807|lcl|protein:vir:96981 Length: 563 # NCBI annotation: ORF003 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1643 # MgeName: 42e # Cross-refs: genbank:acc:YP_239856;genbank:gi:66395511;genbank:GeneID :5133014 Length = 563 Score = 154 bits (390), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 148/545 (27%), Positives = 259/545 (47%), Gaps = 32/545 (5%) Query: 4 FIKRVLDGRLITSKAVNLAVKRHQEDLKRTDWRWHYDPNLAGKAVKFMEILPEPKSGKPQ 63 + ++V G++ TSK V +RH L+ +W +D LA + ++F+E +P G + Sbjct: 18 YAEQVTQGKIKTSKYVKKECERHLRYLENGG-KWVFDEELAHRPIRFIEKFCKPSKGSKR 76 Query: 64 PLA--PFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGVILYEFLFGKNP 121 L P+Q FIIGS++GWV K+ + +RRF + I M RKNGK+ ISGV Y ++ Sbjct: 77 QLVLQPWQHFIIGSLFGWVHKE-TKLRRFKEALIFMGRKNGKTTTISGVANYA--VSQDG 133 Query: 122 ANKRQLYTAANDRKQAGIVFGMVKDRLRALMRKDPGIKRMVKITRDELVNLDDGSTIRSF 181 N +++ AN KQA I+F D +A+++ P ++ + RDE+ S I Sbjct: 134 ENGAEIHLLANVMKQARILF----DESKAMIKASPKLRENFRPLRDEIHYDATISKIMPQ 189 Query: 182 SRDTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTAGFDMNVPMFQ 241 + D+ +DG H+ + DE K +I + + + L I+TAG+ ++ P+ Sbjct: 190 ASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITTAGYQLDGPLVN 249 Query: 242 QNYPYAKKVLSGEEKAERYFAFIAEQDNVQEVDDPNSWIKSNPLLDVDTLHSQISDYLTT 301 + L + ER F ++A D+ +++D ++WIK+NP L V ++ + Sbjct: 250 M-VEAGRDTLDRIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGVSIDLDEMKEEWEK 308 Query: 302 KLAQARADGSLNAKLVKNFNIWRQATEDSYLDFDAW-KAAELTDKPDIRGQRAWIGIDVG 360 G + K FNI+ E S++D+ K ++ ++ G+ IG D+ Sbjct: 309 AKRTPDERGDF---ITKRFNIFANNDEMSFIDYPTLQKNNDIISLDELEGRPCTIGYDLS 365 Query: 361 RTSDLFAISWLIPQEGWWWLDGYAFVASKGGI-DNKIK--TDRIDYLAAEQHGEGEISSL 417 T D A + +G V + I +K++ ++I Y+ E+ +G ++ Sbjct: 366 ETEDFTAACATFALD-----NGKVAVLTHSWIPKHKVEYSNEKIPYIEWEE--DGLLTIQ 418 Query: 418 ESGIIDNDRVYEWLEDFIERND-IDVQGIMYDPYQFGPMLTAIEKNHPEWPMVQVRQGTL 476 ++ ID V W+ I+ N+ V+ I YD + + KN+ + + RQG L Sbjct: 419 DNPYIDYQDVLNWI---IKMNEHYVVEKITYDRANAFKLNQEL-KNYG-FETEETRQGAL 473 Query: 477 TLSMPTKQFRDDVIGGRIKHSDNRIMQAAAMNAVLMSDNNGVRI-NKNKYANKIDMIDAT 535 TLS K ++ + G+I ++N +M+ N L D NG + +K KID A Sbjct: 474 TLSPALKDLKEMFLDGKIIFNNNPLMKWYINNVQLKLDRNGNWLPSKQSRYRKIDGFAAF 533 Query: 536 LDAYA 540 L+ Y Sbjct: 534 LNTYT 538 >gi|13389|lcl|protein:vir:1263 Length: 416 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:329 # MgeName: phi-105 # Cross-refs: genbank:acc:NP_690755;genbank:gi:22854995;genbank:GeneID :955207 Length = 416 Score = 152 bits (385), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 120/435 (27%), Positives = 212/435 (48%), Gaps = 36/435 (8%) Query: 5 IKRVLDGRLITSKAVNLAVKRHQEDLKRT---DWRWHYDPNLAGKAVKFME--------- 52 +++ +L +K+ N AV+R +D+ R D +++D A V F E Sbjct: 2 LRKFASVKLRQAKSKNGAVERFFKDVDRLAEDDCPYYFD---AEAVVDFYEWSRQFNHVE 58 Query: 53 -ILPEPKSGKPQPLAPFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGVI 111 IL +G+P L FQ FI +IYG+ K++ RRF +I +ARKN KS ++ + Sbjct: 59 GIL----AGQPIELTDFQLFIAANIYGFYKKENG-ARRFRKAYIQLARKNAKSQFLALIA 113 Query: 112 LYEFLFGKNPANKRQLYTAANDRKQAGIVFGMVKDRLRALMRKDPGIKRMVKITRDELVN 171 YE + K +++ A R+Q+ V+ + ++L P +K + Sbjct: 114 SYEIFPTQE---KHRVFIAGWSREQSDEVYQAILEQLH----HAPILKGKYTSANGRVKK 166 Query: 172 LDDGSTIRSFSRDT-GLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIIST 230 S I+ SR+ L DG P + +VDEY +T+++ + L SG V S L +I+T Sbjct: 167 YKTNSIIQPLSREARKLGDGKNPSLGIVDEYHAHETSEIYDVLDSGMVARRSPLMAVITT 226 Query: 231 AGFDMNVPMFQQNYPYAKKVLSGEEKAER--YFAFIAEQDNVQEVDDPNSWIKSNPLLDV 288 AGF+M P F++ Y Y K+L + E YF I E D ++ D ++WIK+NP+ V Sbjct: 227 AGFNMERPCFKE-YQYTSKILDPDIDTENDDYFVMICELDPEDDIKDESNWIKANPI--V 283 Query: 289 DTLHSQISDYLTTKLAQARADGSLNAKLVKNFNIWRQATEDSYLDFDAWKAAELTDKPDI 348 T + + + + L KN N W ++ Y+ W+A + PD+ Sbjct: 284 ATYPEGMESLRSALKVALEVPEKMRSFLTKNMNRWVDQKDNGYMKMTKWRACS-GEIPDL 342 Query: 349 RGQRAWIGIDVGRTSDLFAISWLIPQEGWWWLDGYAFVASKGGIDNKIKTDRIDYLAAEQ 408 +G ++G+D+ T+DL ++ ++ Q+G++++ ++F+ + K+ TD++ Y + Sbjct: 343 QGLPVYLGLDLSMTTDLTSVGYVAVQDGFFYVGQHSFMPDARA-NEKMATDKVPYDLWRE 401 Query: 409 HGEGEISSLESGIID 423 G +S E II+ Sbjct: 402 MGFITYTSGEELIIN 416 >gi|8562|lcl|protein:vir:100097 Length: 571 # NCBI annotation: gp2 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1639 # MgeName: phi1026b # Cross-refs: genbank:acc:NP_945032;genbank:gi:38707892;genbank:GeneID :2744144 Length = 571 Score = 150 bits (379), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 151/578 (26%), Positives = 255/578 (44%), Gaps = 56/578 (9%) Query: 4 FIKRVLDGRLITSKAVNLAVKRHQEDL---KRTDWRWHYDPNLAGKAVKFMEILPEPKS- 59 F + V+ G+ + V LA KRH +DL ++ D+RW +DP A + + +E+LP K Sbjct: 14 FARDVVRGKRPACRYVQLACKRHLDDLAASRKKDFRWKFDPEAAERKLALIELLPHTKGE 73 Query: 60 ----GKPQPLAPFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGVILYEF 115 + L P+QKF + + +GW++K + RRF + + + RKNGKS++ +GV + F Sbjct: 74 WAFRKQLVTLEPWQKFGLMATFGWLNKR-TGKRRFRESYWEVPRKNGKSVIAAGVGIGMF 132 Query: 116 L----FGKNPANKRQLYTAANDRKQAGIVFGMVKDRLRALMRKDPG--IKRMVKITRDEL 169 + FG ++Y A KQA VF R ++++ P + +++ + Sbjct: 133 VLDDEFGA------EVYAGATTEKQAWEVFRPA----RLMVKRSPELIVAADIEVNASNM 182 Query: 170 VNLDDGSTIRSFSRDTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIIS 229 +DGS + G DG P ++VDEY + + ET+ +G L FII+ Sbjct: 183 NKPEDGSRFEPLIGNPG--DGASPSCSIVDEYHEHDSAALYETMLTGMGARRQPLMFIIT 240 Query: 230 TAGFDMNVPMFQQNYPYAKKVLSGEEKAERYFAFIAEQDNVQEVDDPNSWIKSNPLLDVD 289 TAG ++ P F + ++L G + F +I D + DP K+NP + + Sbjct: 241 TAGANIEGPCFDKRRQVI-EMLEGTVPDDELFGWIWTIDEGDDWTDPRVLAKANPNIGI- 298 Query: 290 TLHSQISDYLTTKLAQARADGSL-NAKLVKNFNIWRQATEDSYLDFDAWKAAE---LTDK 345 S DYL ++ +A N K+ N+W A + Y + + WK+ E LT + Sbjct: 299 ---SVYQDYLESQQQRAIKSARFTNTFKTKHLNVWTSA-KAGYFNLEDWKSCEDRSLTLE 354 Query: 346 PDIRGQRAWIGIDVGRTSDLFAISWLIPQEGWWWLDG---YAFVASKGGIDNKIKTDRID 402 GQ + +D+ R DL +++ L W +DG Y VA + + + + + Sbjct: 355 -QFEGQDCVLALDMARKLDLNSMARLF----WHDIDGRRHYFCVAPRFWVPEETVRNTEN 409 Query: 403 YLAAEQH----GEGEISSLESGIIDNDRVYEWLEDFIERNDIDVQGIMYDPYQFGPMLTA 458 AE++ +G + + ID + E +D VQ DP+ + Sbjct: 410 RRMAERYQAWVNQGCLLETDGAEIDYRDILEEAKD--ANRLCPVQCTPLDPHGATNLSHQ 467 Query: 459 IEKNHPEWPMVQVRQGTLTLSMPTKQFRDDVIGGRIKHSDNRIMQAAAMNAV---LMSDN 515 +E V + Q +S P K+ + GR H N IM N + L ++ Sbjct: 468 LEDEG--LTPVTIVQNYTNMSDPMKELEAAITAGRFHHDGNPIMTWCVSNVIGKNLPGND 525 Query: 516 NGVRINKNKYANKIDMIDATLDAYAIAFKEDLDNYLDD 553 + VR K NKID A + A A E+ +D+ Sbjct: 526 DVVRPIKQGNDNKIDGAVALIMAIGRAMLENHAGSIDE 563 >gi|13932|lcl|protein:vir:1429 Length: 570 # NCBI annotation: putative terminase (large subunit) # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:30 # MgeName: phiE125 # Cross-refs: genbank:acc:NP_536358;genbank:gi:17975163;genbank:GeneID :929161 Length = 570 Score = 147 bits (370), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 153/587 (26%), Positives = 256/587 (43%), Gaps = 59/587 (10%) Query: 4 FIKRVLDGRLITSKAVNLAVKRHQEDL---KRTDWRWHYDPNLAGKAVKFMEILPEPKS- 59 F + V+ G+ + V LA KRH +DL ++ D+RW +DP A + + +E+LP K Sbjct: 14 FARDVVRGKRPACRYVQLACKRHLDDLAASRKKDFRWKFDPEAAERKLALIELLPHTKGE 73 Query: 60 ----GKPQPLAPFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGVILYEF 115 G+ L P+QKF + + +GW++K + RRF + + + RKNGKS+ +GV + F Sbjct: 74 WAFKGQLVTLEPWQKFGLMATFGWLNKR-TGKRRFRESYWEVPRKNGKSVTAAGVGIGMF 132 Query: 116 L----FGKNPANKRQLYTAANDRKQAGIVFGMVKDRLRALMRKDPGI--KRMVKITRDEL 169 + FG ++Y A KQA VF + ++++ P + +++ + Sbjct: 133 VLDDEFGA------EVYAGATTEKQAWEVFRPAQ----LMVKRSPMLIDSAGIEVNASNM 182 Query: 170 VNLDDGSTIRSFSRDTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIIS 229 DGS + G DG P A+VDEY + + ET+ +G L FII+ Sbjct: 183 NKPADGSRFEPIIGNPG--DGASPSCAIVDEYHEHDSAALYETMLTGMGARRQPLMFIIT 240 Query: 230 TAGFDMNVPMFQQNYPYAKKVLSGEEKAERYFAFIAEQDNVQEVDDPNSWIKSNPLLDVD 289 TAG ++ P F + ++L G + F +I D + DP K+NP + + Sbjct: 241 TAGANIEGPCFDKRRQVI-EMLEGTVPDDELFGWIWTIDEGDDWTDPRVLAKANPNIGI- 298 Query: 290 TLHSQISDYLTTKLAQARADGSL-NAKLVKNFNIWRQATEDSYLDFDAWKAAE---LTDK 345 S DYL ++ +A N K+ N+W A + Y + + WK+ E LT + Sbjct: 299 ---SVYQDYLESQQQRAIKSARFTNTFKTKHLNVWTSA-KAGYFNLEDWKSCEDRSLTLE 354 Query: 346 PDIRGQRAWIGIDVGRTSDLFAISWLIPQEGWWWLDG---YAFVASKGGIDNKIKTDRID 402 GQ + +D+ R DL +++ L W +DG Y VA + + + + Sbjct: 355 -QFEGQDCVLALDMARKLDLNSMARLF----WHDIDGRRHYFCVAPRFWVPEDTVRNTEN 409 Query: 403 YLAAEQH----GEGEISSLESGIIDNDRVYEWLEDFIERNDIDVQGIMYDPYQFGPMLTA 458 AE++ +G + + ID + E +D VQ DP+ G + Sbjct: 410 RRMAERYQAWVNQGCLLETDGAEIDYRDILEEAKD--ANRLCPVQCTPLDPH--GATNLS 465 Query: 459 IEKNHPEWPMVQVRQGTLTLSMPTKQFRDDVIGGRIKHSDNRIMQAAAMNAV---LMSDN 515 + V + Q +S P K+ + GR H N IM N + L ++ Sbjct: 466 HQLADEGLTPVTIVQNYTNMSDPMKELEAAITSGRFHHDGNPIMTWCVSNVIGKNLPGND 525 Query: 516 NGVRINKNKYANKIDMIDATLDAYAIAFKEDLDNYLDDDRVFSDDFG 562 + VR K NKID A + A A L + +D + ++ G Sbjct: 526 DVVRPIKQGNDNKIDGAVALIMAVGRAM---LADRVDSESIYDQGVG 569 >gi|19315|lcl|protein:vir:4508 Length: 577 # NCBI annotation: large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:97 # MgeName: V # Cross-refs: genbank:acc:NP_599034;genbank:gi:19548992;genbank:GeneID :935222 Length = 577 Score = 146 bits (368), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 150/576 (26%), Positives = 260/576 (45%), Gaps = 55/576 (9%) Query: 4 FIKRVLDGRLITSKAVNLAVKRHQEDL---KRTDWRWHYDPNLAGKAVKFMEILPEPKSG 60 + + V+ G+++ + V A +RH +DL K +R+ +D +LA + KF+++LP K Sbjct: 15 YARDVVRGKIVACQFVIQACQRHLDDLMAEKSKSFRYRFDKDLAERVAKFIQLLPHTKGE 74 Query: 61 -----KPQPLAPFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGVILYEF 115 P L P+Q F+I +GWV+K S +RRF +V+ + RKNGKS + +GV LY Sbjct: 75 WAFKRMPITLEPWQLFVICCAFGWVNKG-SRLRRFREVYTEIPRKNGKSAISAGVALY-- 131 Query: 116 LFGKNPANKRQLYTAANDRKQAGIVFGMVKDRLRALMRKDPGIKRM--VKITRDELVNLD 173 F + ++Y+ A KQA VF R + ++ P + +++ + + Sbjct: 132 CFACDNEFGAEVYSGATTEKQAWEVFRPA----RLMCKRTPMLTEAFGIEVNASNMNRPE 187 Query: 174 DGSTIRSFSRDTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTAGF 233 DG+ + G DG PH AVVDEY T + T+ +G L + I+TAG+ Sbjct: 188 DGARFEPLIGNPG--DGSSPHCAVVDEYHEHATDALYTTMLTGMGARRQPLMWAITTAGY 245 Query: 234 DMNVPMFQQNYPYAKKVLSGEEKAERYFAFIAEQDNVQEVDDPNSWIKSNPLLDVDTLHS 293 ++ P + + ++L+G + F I D + DP K+NP + V S Sbjct: 246 NIEGPCYDKRREVI-EMLNGSVPNDELFGIIYTVDEGDDWTDPQVLEKANPNIGV----S 300 Query: 294 QISDYLTTKLAQARADGSL-NAKLVKNFNIWRQATEDSYLDFDAWKAAELTDKP----DI 348 ++L ++ +A+ + L N K+ NIW A +Y + +W++ E DK Sbjct: 301 VYREFLLSQQQRAKNNARLANVFKTKHLNIWVSA-RSAYFNLVSWQSCE--DKSLTLEQF 357 Query: 349 RGQRAWIGIDVGRTSDLFAISWLIPQEGWWWLDG---YAFVASKGGI--DNKIKTDR-ID 402 GQ + D+ R D+ +++ L +E +DG Y VA + + D ++ D Sbjct: 358 EGQPCILAFDLARKLDMNSMARLYTRE----IDGKTHYYSVAPRFWVPYDTVYSVEKNED 413 Query: 403 YLAAEQHGE----GEISSLESGIIDNDRVYEWLEDFIERNDID-VQGIMYDPYQFGPMLT 457 AE+ + G ++ + +D + LE+ N I V DP FG Sbjct: 414 RRTAERFQKWVEMGVLTVTDGAEVDYRYI---LEEAKAANKISPVSESPIDP--FGATGL 468 Query: 458 AIEKNHPEWPMVQVRQGTLTLSMPTKQFRDDVIGGRIKHSDNRIMQAAAMNAV---LMSD 514 + + + V + Q +S P K+ + GR H N IM N V + + Sbjct: 469 SHDLADEDLNPVTIVQNFANMSDPMKELEAAIESGRFHHDGNPIMTWCIGNVVGKNMPGN 528 Query: 515 NNGVRINKNKYANKIDMIDATLDAYAIAFKEDLDNY 550 ++ V+ K + NKID A + A ++ D++ Sbjct: 529 DDLVKPVKEQAENKIDGAVALIMTIGRAMLKEPDDF 564 >gi|17978|lcl|protein:vir:4335 Length: 563 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:93 # MgeName: D3 # Cross-refs: genbank:acc:NP_061498;genbank:gi:9635588;genbank:GeneID: 1262853 Length = 563 Score = 145 bits (365), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 139/520 (26%), Positives = 234/520 (45%), Gaps = 60/520 (11%) Query: 8 VLDGRLITSKAVNLAVKRHQEDLKRT---DWRWHYDPNLAGKAVKFMEILPEPK-----S 59 V+ G ++ + V LA +R DL R DW + +D A +AVKFM+++P K S Sbjct: 14 VVGGAIVACRYVALACQRFLNDLDRQSDDDWPYVFDEAKADRAVKFMQLMPHTKGKWSAS 73 Query: 60 GKPQPLAPFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGVILYEFLFGK 119 P+Q FI +I+GWV K D+ RRF + + + RKNGKS ++ +Y LF Sbjct: 74 KSKLVFEPWQVFIEANIFGWV-KRDTGKRRFREAYEEIPRKNGKSARLAARGIY--LFAA 130 Query: 120 NPANKRQLYTAANDRKQAGIVFG---MVKDRLRALM----------RKDPGIKRMVKITR 166 + + ++Y+ A KQA VF M+ +L L +K+PG Sbjct: 131 DGESGAEVYSGATTEKQAFEVFRPAWMMAHKLENLRNRFGIELSGNQKNPG--------- 181 Query: 167 DELVNLDDGSTIRSFSRDTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTF 226 + ++D S + + G DG PH A+VDEY T +++T+ +G L Sbjct: 182 -PMFVMEDMSKFETVIGNPG--DGASPHAALVDEYHEHDTDALVDTMQTGMGAREQPLLS 238 Query: 227 IISTAGFDMNVPMFQQNYPYAKKVLSGEEKAERYFAFIAEQDNVQEVDDPNSWIKSNPLL 286 II+TAG ++ P ++ ++L G+ E F I D DDP S IK+NP Sbjct: 239 IITTAGSNLGGPCHEKRRDVI-RILEGQTIDETIFGIIYTIDEDDPWDDPASLIKANPNY 297 Query: 287 DVDTLHSQISDYLTTKLAQARADGS-LNAKLVKNFNIWRQATEDSYLDFDAWKAAELT-D 344 V S D+L +L QA+ S NA K+ N W A +++ AW+ + Sbjct: 298 GV----SVFPDFLLAQLQQAKRSASKQNAFRTKHLNQWVGA-RTVWMNMLAWQRQKRDFT 352 Query: 345 KPDIRGQRAWIGIDVGRTSDLFAISWLIPQEG-WWWLDGYAFVASKGGIDNKIKTDRID- 402 D+ G R W+ +D+ D+ A+ L + G ++ + + + + K + ++ Sbjct: 353 IADMAGCRCWMALDLASKKDVAALVMLFEKAGQFYCIPRFYAPEAAAEENEKYQNFALEG 412 Query: 403 YLAAEQHGEGEISSLESGIIDNDRVYEWLEDFIERNDIDVQGIMYDPYQFGPMLTAIEKN 462 +L + + +E+ I+D + ID+Q +D +Q ++T + + Sbjct: 413 HLVLTPGSMTDYAFIEADILDLAK------------QIDLQDAAFDDWQANYLITRL--S 458 Query: 463 HPEWPMVQVRQGTLTLSMPTKQFRDDVIGGRIKHSDNRIM 502 + P+V Q +S P K+ VI + H N +M Sbjct: 459 NTSIPVVDFNQTVKNMSDPMKEVEARVIARTLWHDGNPVM 498 >gi|593|lcl|protein:vir:481 Length: 570 # NCBI annotation: putative terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:11 # MgeName: P27 # Cross-refs: genbank:acc:NP_543088;swissprot:trembl:q8w631;genbank:gi :18249900;uniprot:Q8W631;genbank:GeneID:929687 Length = 570 Score = 144 bits (362), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 153/560 (27%), Positives = 253/560 (45%), Gaps = 64/560 (11%) Query: 4 FIKRVLDGRLITSKAVNLAVKRHQEDLK---RTDWRWHYDPNLAGKAVKFMEILPEPKSG 60 + + V+ G++ + V LA +RH +DL+ + ++ + +D + A + KF+++LP K Sbjct: 9 YARDVVRGKIQVCRYVVLACQRHLDDLENSAKKNYPFKFDKDKAERVAKFIQLLPHTKGE 68 Query: 61 -----KPQPLAPFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGVILYEF 115 P L P+Q F I ++GWV K S +RRF + + + RKNGKS + +GV LY Sbjct: 69 WAFKRMPITLEPWQLFCICVVFGWVRKK-SGLRRFREAYNEIPRKNGKSAMSAGVGLY-- 125 Query: 116 LFGKNPANKRQLYTAANDRKQAGIVFGMVKDRLRALMRKDPGIKRM-VKITRDELVNLDD 174 +F + ++Y+ A KQA VF RL A R +P + +++ + +D Sbjct: 126 MFACDDEFGAEVYSGATTEKQAWEVFRPA--RLMA-QRTEPLREAFGIEVHAQSMSRPED 182 Query: 175 GSTIRSFSRDTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTAGFD 234 G+ D G DG P A++DEY +T + +T+ +G L F I+TAG++ Sbjct: 183 GARFEPLIGDPG--DGASPSCALIDEYHEHQTDALYQTMQTGMGARRQPLIFGITTAGYN 240 Query: 235 MNVPMFQQNYPYAKKVLSGEEKAERYFAFIAEQDNVQEVDDPNSWIKSNPLLDVDTLHSQ 294 + P + + ++L G + F I D+ + DP K+NP + + S Sbjct: 241 IEGPCYDKRREVI-EMLEGIVPNDELFGIIYTIDDGDDWTDPAVLRKANPNMGI----SV 295 Query: 295 ISDYLTTKLAQARADGSLNAKL----VKNFNIWRQATEDSYLDFDAWKAAE---LTDKPD 347 SDYL L+Q RA + K+ K+ NIW A +D++ + W+ E LT + Sbjct: 296 YSDYL---LSQQRAAINNPRKVGVFKTKHLNIW-VAAKDAFFNLVNWQKCEDRSLTLE-R 350 Query: 348 IRGQRAWIGIDVGRTSDLFAISWLIPQEGWWWLDG---YAFVASKGGI--DNKIKTDRID 402 G + D+ R DL A+ L +E +DG Y VA K + D D D Sbjct: 351 FEGHTCILAFDLARKLDLNAMVRLFTRE----IDGKTHYYCVAPKFFVPYDTIYSADVTD 406 Query: 403 YLAAEQHGE----GEISSLESGIIDNDRVYEWLED-----FIERNDIDVQGIMYDPYQFG 453 AE++ + G I+ + ID + E ++ +E + ID G + Sbjct: 407 SRTAERYQKWVEGGFITVTDGAEIDYREILESAKEANRLNAVEESPIDPHGATNLSHHL- 465 Query: 454 PMLTAIEKNHPEWPMVQVRQGTLTLSMPTKQFRDDVIGGRIKHSDNRIMQAAAMNAV--- 510 A E +P + + Q +S P K+ + GR H N +M N + Sbjct: 466 ----ADENLNP----ITIIQNYTNMSDPMKELEAAIEAGRFHHDGNPVMTWCISNVIGKH 517 Query: 511 LMSDNNGVRINKNKYANKID 530 + D++ VR K NKID Sbjct: 518 IPGDDDVVRPIKQGNENKID 537 >gi|17922|lcl|protein:vir:4452 Length: 577 # NCBI annotation: Terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:96 # MgeName: ST64B # Cross-refs: genbank:acc:NP_700375;genbank:gi:23505447;genbank:GeneID :955654 Length = 577 Score = 132 bits (331), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 145/580 (25%), Positives = 251/580 (43%), Gaps = 57/580 (9%) Query: 4 FIKRVLDGRLITSKAVNLAVKRHQEDL---KRTDWRWHYDPNLAGKAVKFMEILPEPKSG 60 + + V+ G++ + V A +RH +D+ K +R+ +D ++A KA KF+++LP K Sbjct: 15 YARNVVRGKITACQYVIQACQRHIDDMAAEKSKRFRYRFDKDMAEKAAKFIQLLPHTKGE 74 Query: 61 -----KPQPLAPFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGVILYEF 115 L P+Q FI+ +GWV K + +RRF +V+ + RKNGKS + +GV LY F Sbjct: 75 WAFKRMLITLEPWQLFIVCCAFGWVQKG-TKLRRFREVYTEIPRKNGKSAISAGVALYCF 133 Query: 116 L----FGKNPANKRQLYTAANDRKQAGIVFGMVKDRLRALMRKDPGIKRM--VKITRDEL 169 FG ++Y+ A KQA VF R + ++ P + +++ L Sbjct: 134 TCDNEFGA------EVYSGATTEKQAWEVFRPA----RLMCKRTPLLVEAFGIEVNASNL 183 Query: 170 VNLDDGSTIRSFSRDTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIIS 229 +DG+ + G DG PH A+VDEY T + T+ +G L + I+ Sbjct: 184 NRPEDGARFEPLIGNPG--DGASPHCAIVDEYHEHPTDALYTTMLTGMGARRQPLMWAIT 241 Query: 230 TAGFDMNVPMFQQNYPYAKKVLSGEEKAERYFAFIAEQDNVQEVDDPNSWIKSNPLLDVD 289 TAG+++ P + + ++L+G F I D + DP K+NP + V Sbjct: 242 TAGYNIEGPCYDKRREVI-EMLNGSVPNNELFGVIYTVDEGDDWTDPKVLEKANPNIGVS 300 Query: 290 TLHSQISDYLTTKLAQARADGSLNAKLVKNFNIWRQATEDSYLDFDAWKAAE---LTDKP 346 + + AR G K+ N+W A ++ + +W+ E LT + Sbjct: 301 VYRDFLLSQQQRAINNARHAGVFK---TKHLNVW-VAARTAFFNLVSWQNCEDKTLTLEL 356 Query: 347 DIRGQRAWIGIDVGRTSDLFAISWLIPQEGWWWLDG---YAFVASKGGI--DNKIKTDR- 400 GQ + D+ R D+ +++ L +E +DG + VA + + D ++ Sbjct: 357 -FEGQPCVLAFDLARKLDMNSMARLFTRE----IDGKTHFYSVAPRFWVPYDTVYSVEKN 411 Query: 401 IDYLAAEQHGE----GEISSLESGIIDNDRVYEWLEDFIERNDIDVQGIMYDPYQFGPML 456 D AE+ + G ++ + +D + E + + N + I DP FG Sbjct: 412 EDRRTAERFQKWVEMGFLTVTDGAEVDYRYILEEAKAANKLNPVSESPI--DP--FGATG 467 Query: 457 TAIEKNHPEWPMVQVRQGTLTLSMPTKQFRDDVIGGRIKHSDNRIMQAAAMNAV---LMS 513 + + V + Q +S P K+ + GR H N IM N V + Sbjct: 468 LSHDLADENLNPVTIIQNYTNMSDPMKELEAAIESGRFHHDGNPIMTWCIGNVVGKTIPG 527 Query: 514 DNNGVRINKNKYANKIDMIDATLDAYAIAFKEDLDNYLDD 553 +++ V+ K + NKID A + A A + ++ L D Sbjct: 528 NDDVVKPIKEQAENKIDGAVALIMAVGRAMLYEKEDTLSD 567 >gi|12826|lcl|protein:vir:80335 Length: 571 # NCBI annotation: gp2, phage terminase, large subunit, putative # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1881 # MgeName: phi644-2 # Cross-refs: genbank:acc:YP_001111081;genbank:gi:134288625;genbank:Ge neID:4960582 Length = 571 Score = 130 bits (327), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 142/581 (24%), Positives = 245/581 (42%), Gaps = 47/581 (8%) Query: 4 FIKRVLDGRLITSKAVNLAVKRHQEDL---KRTDWRWHYDPNLAGKAVKFMEILPEPK-- 58 F + V+ G++ + V LA +RH +DL K +++ +DP A K ++ +++LP K Sbjct: 15 FARDVVRGKVPACRWVILACQRHLDDLAASKSAAFKYKFDPAKAEKKLRLIQLLPHTKGE 74 Query: 59 -SGKPQ--PLAPFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGVILYEF 115 + K Q L P+Q F + +GWV K + RRF + + + RKNGKS++ +GV + Sbjct: 75 WAYKRQLVTLEPWQLFGLACTFGWVRKK-TGFRRFRESYWEVPRKNGKSVIAAGVGIA-- 131 Query: 116 LFGKNPANKRQLYTAANDRKQAGIVFGMVKDRLRALMRKDPGIKRM--VKITRDELVNLD 173 +F + ++Y A +QA VF R ++++ P + +++ L + Sbjct: 132 MFTADDEFGAEVYCGATTERQAWEVFRPA----RLMVKRSPLLIEHLGIEVNAQALNRPE 187 Query: 174 DGSTIRSFSRDTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTAGF 233 DGS + G DG P A+ DEY T ET+ +G L F+I+TAG Sbjct: 188 DGSRFEPIIGNPG--DGASPSCAIEDEYHEHDTNAQYETMLTGMGARRQPLMFVITTAGA 245 Query: 234 DMNVPMFQQNYPYAKKVLSGEEKAERYFAFIAEQDNVQEVDDPNSWIKSNPLLDVDTLHS 293 ++ P + + ++L G + F +I D + DP K+NP + + Sbjct: 246 NIEGPCYDKRRQVI-EMLEGTVPDDELFGWIWTIDEDDDWTDPRVLAKANPNIGISVYQE 304 Query: 294 QISDYLTTKLAQARADGSLNAKLVKNFNIWRQATEDSYLDFDAWKAAE--LTDKPDIRGQ 351 + + AR + K+ N+W A + Y + + WKA E GQ Sbjct: 305 YLESQQQRAIKSARFTNTFK---TKHLNVWTSA-KAGYFNLEDWKACEDRSLSLEQFEGQ 360 Query: 352 RAWIGIDVGRTSDLFAISWLIPQEGWWWLDG---YAFVASKGGIDNKIKTDRIDYLAAEQ 408 + +D+ R DL +++ L W +DG Y VA + + + + AE+ Sbjct: 361 DCVLALDMARKLDLNSMARLF----WRDIDGRRHYFCVAPRFWVPEDTVRNTENRRMAER 416 Query: 409 H----GEGEISSLESGIIDNDRVYEWLEDFIERNDIDVQGIMYDPYQFGPMLTAIEKNHP 464 + G + + ID + E ++ R VQ DP+ G + + Sbjct: 417 YQAWVNHGFLIETDGAEIDYREILEEAKEANRR--CPVQCTPLDPH--GATNLSHQLADE 472 Query: 465 EWPMVQVRQGTLTLSMPTKQFRDDVIGGRIKHSDNRIMQAAAMNAV---LMSDNNGVRIN 521 V + Q +S P K+ + R H N IM N + L +++ VR Sbjct: 473 GLTPVTIVQNYTNMSDPMKELEAAITSRRFHHDGNPIMTWCISNVIGKNLPGNDDVVRPV 532 Query: 522 KNKYANKIDMIDATLDAYAIAFKEDLDNYLDDDRVFSDDFG 562 K NKID A + A A L + +D + ++ G Sbjct: 533 KQGNDNKIDGAVALIMAVGRAM---LADRVDSESIYDQGVG 570 >gi|967|lcl|protein:vir:6208 Length: 574 # NCBI annotation: Terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:128 # MgeName: phBC6A52 # Cross-refs: genbank:acc:NP_852588;genbank:gi:31415848;genbank:GeneID :1489206 Length = 574 Score = 109 bits (273), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 128/548 (23%), Positives = 251/548 (45%), Gaps = 48/548 (8%) Query: 17 KAVNLAVKRHQEDLKRTD-WRWHYDPNLAGKAVKFMEI----LPEPKSGKPQPLAPFQKF 71 K++ LAV+R+++ KR + W +D + A + + F++ + P +G+ L ++ F Sbjct: 26 KSIILAVERYKKWKKRKEIW---FDVDRANEMLDFVQSFIRHVKGPLAGQLMELELWEMF 82 Query: 72 IIGSIYGWVDKDDS--NIRRFTDVFISMARKNGKSLLISGVILYEFLFGKNPANKRQLYT 129 + ++YGW K++ +R + ++ + +KNGK+++ +G +LY ++G+ Y Sbjct: 83 VFANMYGWYHKNEKGKTVRVIRESYVQVPKKNGKTIIAAGALLYA-MYGELELGA-DCYC 140 Query: 130 AANDRKQAGIVFGMVKDRLRALMRKDP---------GIKRMVK--ITRDELVNLDDGSTI 178 AA+D +QA + +A+ +P G+ V + R + + + Sbjct: 141 AASDYEQAQ---NAAEPIAQAIENSEPLARHTQIYKGVNGTVSGAMYRYSINGIAYQNKF 197 Query: 179 RSFSRDTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTAGFDMNVP 238 + +++T ++G P+ + DE + DM + L S Q+ + ISTAG + Sbjct: 198 KVLTKNTKGLEGKNPYFVLNDELHAQENMDMYDNLKSAQISREQPMMLNISTAGKGAS-S 256 Query: 239 MFQQNYPYAKKVLSGEEKAERYFAFIAEQDNVQEVDDPNSWIKSNPLLDVDTLHSQISDY 298 + + Y YAK VL ++ + F I E + + +D W NP + V Q Sbjct: 257 VGMRVYKYAKLVLENDDD-DSLFVAIWEPNKNYDWEDRKVWKMVNPNIGVSVTMEQ---- 311 Query: 299 LTTKLAQARADGSLNAK-LVKNFNIWRQATEDSYLDFDAWKAAELTDKPDIRGQRAWIGI 357 L + +A+ A+ L K+ N++ D+Y + D + + D D+ G+ ++G+ Sbjct: 312 LEIEFKKAKQSAHSKAEFLSKHLNVFVNGA-DNYFEHDQVQHVLVKDLGDLTGEICYLGL 370 Query: 358 DVGRTSDLFAISWLIPQ---EGWWWLD-GYAFVASKGGIDNKIKTDRIDYLAAEQHGEGE 413 D+ +T+DL +S P EG + + ID K K D + Y + G Sbjct: 371 DLSKTTDLTCVSLNFPSHDDEGRSIIKVKQMYFLPNENIDFKEKEDNVPYTDMVERGFA- 429 Query: 414 ISSLESGIIDNDRVYEWLEDFIERNDI-DVQGIMYDPYQFGPMLTAIEKNHPEWPMVQVR 472 + + +ID D++ E++ +E D+ DVQ I YDP ++ +E E V Sbjct: 430 -TFCDGKMIDQDQIMEYI---VECMDLYDVQQINYDPAMSQKLIEKLENLGLECIAVNQY 485 Query: 473 QGTLTLSMPTKQFRDDVIGGRIKHSDNRIMQAAAMNAVLMSDNNGVRI-NKNKYANKIDM 531 + + + +I + +DN + A+N V++++ NG++ +K + KID Sbjct: 486 PNVMNAMLDDSEI---LIYEKRLITDNPLFVYCALNVVVVTNINGMKAPSKRQSKKKIDG 542 Query: 532 IDATLDAY 539 A L A+ Sbjct: 543 FVAFLCAH 550 >gi|15774|lcl|protein:vir:6239 Length: 527 # NCBI annotation: gp33 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:131 # MgeName: phi-BT1 # Cross-refs: genbank:acc:NP_813693;swissprot:trembl:q859c4;genbank:gi :29366753;interpro:IPR005021;uniprot:Q859C4;genbank:Gene ID:1258893 Length = 527 Score = 107 bits (266), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 135/501 (26%), Positives = 207/501 (41%), Gaps = 66/501 (13%) Query: 59 SGKPQPLAPFQKFIIGSIYGWVDKDDSNIRR-FTDVFISMARKNGKSLLISGVILYEFLF 117 +G+P L P+Q+ ++ Y RR V + +ARKNGKS + + ++LY + Sbjct: 46 AGQPFRLLPWQRTLLIDAYELTQDTFGRWRRKHRTVVVCVARKNGKSTIAAAIMLYHLIA 105 Query: 118 GKNPANKRQLYTAANDRKQAGIVFGMVKDRLRALMRKDPGIKRMVKITRDELVNLDDGST 177 + A +RQ+ AANDR QA +VF D + ++ P + + + RD + D+ T Sbjct: 106 DRGDA-QRQVIAAANDRNQARMVF----DSAKQMVNASPKLAAVCNVQRDVIRYKDN--T 158 Query: 178 IRSFSRDTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTAGFDMNV 237 R S D G G P +DEYA +K++D+ + L G + IISTAG D + Sbjct: 159 YRVVSADAGRQQGLNPAAVSLDEYAFSKSSDLFDALTLGSAARNQPMFLIISTAGPDPDG 218 Query: 238 PMFQQNYPYAKKVLSGEEKAERYFAFIAEQDNVQEVD--DPNSWIKSNPLLDVDTLHSQI 295 P F ++V SGE F + VD DP W + NP D+ Sbjct: 219 P-FAALCEQGERVNSGEADDPTLFYRSWGPKLGETVDHLDPEVWARCNPSYDI------- 270 Query: 296 SDYLTTKLAQARADGSLNAKLVKNFNIWRQAT----EDSYLDFDAWKA-AELTDKPDIRG 350 L +A A S A +F I+R + ++L W + A D P G Sbjct: 271 ---LNPDDFKAAAQRSTEA----SFRIYRLSQFVRGASTWLPHGLWDSLAADDDDPLEPG 323 Query: 351 QRAWIGIDVGRTSDLFAISWLIPQEGWWWLDGYAFVASKGGIDNKIKTDRIDYLAAEQHG 410 G D G W D A VA +++ R+ L H Sbjct: 324 DEVVCGFD-----------------GSWKGDSTALVAC------RVRDLRVFVLG---HW 357 Query: 411 EGEISSLESGIIDNDRVYEWLEDFIERNDIDVQGIMYDPYQFGPMLTAIEKNHPEWPMVQ 470 E + + D V E L + + V+ ++ DPY++ L +E +P+ Sbjct: 358 EAPADDIHWRVPMAD-VREALHSAL--DTYRVRNLVADPYRWEETLDNLEAEG--FPVEA 412 Query: 471 VRQGTLTLSMP-TKQFRDDVIGGRIKHSDNRIMQAAAMNAVLMSDNNGVRINKNKYAN-- 527 +L +P T+ D GR+ H N + NAVL D G RI K A+ Sbjct: 413 FPTNSLARMVPATQAVYDACRDGRLSHDGNPALARHIGNAVLKEDARGARITKEFGASRR 472 Query: 528 KIDMIDATLDAY--AIAFKED 546 KID+ A + A A+ ++ED Sbjct: 473 KIDLAVAMVLAVWGAVMWRED 493 >gi|15412|lcl|protein:vir:1325 Length: 519 # NCBI annotation: gp33 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:28 # MgeName: phi-C31 # Cross-refs: genbank:acc:NP_047924;swissprot:trembl:q9t214;genbank:gi :9631142;uniprot:Q9T214;genbank:GeneID:2715903 Length = 519 Score = 105 bits (263), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 129/500 (25%), Positives = 202/500 (40%), Gaps = 65/500 (13%) Query: 59 SGKPQPLAPFQKFIIGSIYGWVDKDDSNIRR-FTDVFISMARKNGKSLLISGVILYEFLF 117 +G+P L P+Q+ ++ Y RR V + +ARKNGKS + + ++LY + Sbjct: 43 AGQPFRLLPWQRELLIDAYVLTQDTFGRWRRKHRTVVVCVARKNGKSTIAAAIMLYHLIA 102 Query: 118 GKNPANKRQLYTAANDRKQAGIVFGMVKDRLRALMRKDPGIKRMVKITRDELVNLDDGST 177 + A +RQ+ AANDR QA +VF D + ++ P + + + RD + D+ T Sbjct: 103 DRGDA-QRQIIAAANDRNQARMVF----DSAKQMVNASPKLAAVCDVQRDVIRYKDN--T 155 Query: 178 IRSFSRDTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTAGFDMNV 237 R S D G G P +DEYA +K +D+ + L G + IISTAG D + Sbjct: 156 YRVVSADAGRQQGLNPAAVSLDEYAFSKHSDLFDALTLGSAARNQPMFLIISTAGPDPDG 215 Query: 238 PMFQQNYPYAKKVLSGEEKAERYFAFIAEQDNVQEVD--DPNSWIKSNPLLDVDTLHSQI 295 P F ++V SGE F + VD DP+ W NP D+ Sbjct: 216 P-FAALCEQGERVNSGEADDPTLFYRSWGPKLGETVDHLDPDVWRACNPSYDI------- 267 Query: 296 SDYLTTKLAQARADGSLNAKLVKNFNIWRQAT----EDSYLDFDAWKAAELTDKPDIRGQ 351 L +A A S A +F I+R + ++L W + D P G Sbjct: 268 ---LNPDDFKAAAQRSTEA----SFRIYRLSQFVRGASTWLPHGLWDSLAADDDPLEPGD 320 Query: 352 RAWIGIDVGRTSDLFAISWLIPQEGWWWLDGYAFVASKGGIDNKIKTDRIDYLAAEQHGE 411 +G D G W D A VA + + A + H Sbjct: 321 EVVLGFD-----------------GSWKGDSTALVACRIRDLKVFVLGHWEAPADDAHWR 363 Query: 412 GEISSLESGIIDNDRVYEWLEDFIERNDIDVQGIMYDPYQFGPMLTAIEKNHPEWPMVQV 471 ++ + + VY V+ ++ DPY++ L +E + +P+ Sbjct: 364 VPMADVREELHTALDVYR------------VRNLVADPYRWEETLDNLEAD--GFPVEAF 409 Query: 472 RQGTLTLSMP-TKQFRDDVIGGRIKHSDNRIMQAAAMNAVLMSDNNGVRINKNKYAN--K 528 +L +P T+ D GR+ H N + NAVL D G RI K ++ K Sbjct: 410 PTNSLARMVPATQAVYDACRDGRLSHDGNPALGRHIGNAVLKEDARGARITKEHASSRRK 469 Query: 529 IDMIDATLDAY--AIAFKED 546 ID+ A + A A+ ++ED Sbjct: 470 IDLAVAMVLAVHGAVMWRED 489 >gi|15611|lcl|protein:vir:188 Length: 504 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:6 # MgeName: HK97 # Cross-refs: genbank:acc:NP_037698;genbank:gi:9634166;genbank:GeneID: 1262528 Length = 504 Score = 99.0 bits (245), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 126/513 (24%), Positives = 221/513 (43%), Gaps = 54/513 (10%) Query: 46 KAVKFME---ILPEPKS-GKPQPLAPFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKN 101 + + F+E I+PE K G+P L PFQK I ++Y D I +S+ARKN Sbjct: 6 RVIAFIERFCIVPEGKLIGQPMRLDPFQKDFILAVYDNPAGTDMAI-------LSIARKN 58 Query: 102 GKSLLISGVILYEFLFGKNPANKRQLYTAANDRKQAGIVFGMVKDRLRALMRKDPGIKRM 161 GK+ LI+G++L L G Q+ + A R+QA IVF + ++ +P ++ + Sbjct: 59 GKTGLIAGILLAH-LVGPEAVQNTQIVSGALSREQAAIVFNLAVK----MVNLNPKLQEI 113 Query: 162 VKITRD--ELVNLDDGSTIRSFSRDTGLVDGYEPHVAVVDEYANAKTT--DMIETLASGQ 217 V IT +L+ L ++ S + G P +A++DE + D I+ + + Q Sbjct: 114 VHITPSGKKLIGLPCNVEYKALSAEGKTTHGLSPILAILDETGQVRGPQDDFIDAITTAQ 173 Query: 218 VLLPSYLTFIISTAGFDMNVPMFQQNYPYAKKVLSGEEKAERYFAFIAEQDNVQEVDDPN 277 + L +IST + + + A K K + E ++ Sbjct: 174 GAHENPLLIVISTQAAN-DADLLSIWIDDAVK-----SKDPHIVCHVYEAPKDADISKRE 227 Query: 278 SWIKSNPLLDVDTLHSQISDYLTTKLAQARADGSLNA--KLVKNFNI-WRQATEDSYLDF 334 SW+ +NP L T S+ QA G + + +N N+ R +T ++ Sbjct: 228 SWLAANPALG--TFRSE-----KDMARQAEKAGRMPSFENTFRNLNLNQRVSTVSPFISR 280 Query: 335 DAWKAAELTDKPDIRGQRAW-IGIDVGRTSDLFAISWLIPQE---GWWWLDGYAFV-ASK 389 W EL + I R W G+D+ +DL A+ +I E G W D + F + Sbjct: 281 SVW---ELCGEMPINTPRKWYAGLDLSARNDLTAL--VIAGEADDGVW--DVFPFFWTPQ 333 Query: 390 GGIDNKIKTDRIDYLAAEQHGEGEISSLESGIIDNDRVYEWLEDFIERNDIDVQGIMYDP 449 ++ + KTDR Y + EG + + +D V + + I D D+ + +D Sbjct: 334 KTLEERTKTDRAPYDVWVR--EGLLRTTPGASVDYSFVVADIAEII--GDFDLTSMAFDR 389 Query: 450 YQFGPMLTAIEKNHPEWPMVQVRQGTLTLSMPTKQFRDDVIGGRIKHSDNRIMQAAAMNA 509 ++ + P+V+ QG + ++ GR++H + ++ A+NA Sbjct: 390 WRIDQFRKDADAIGLSLPLVEFGQGFKDMGPAVDTLESLMLNGRVRHGMHPVLTMCAVNA 449 Query: 510 VLMSDNNGVR-INKNKYANKID-MIDATLDAYA 540 V++ D G R ++K+K +ID M+ T+ A Sbjct: 450 VVVKDAAGNRKLDKSKATGRIDGMVAMTMSVGA 482 >gi|14327|lcl|protein:vir:9358 Length: 453 # NCBI annotation: terminase-large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:166 # MgeName: phi 12 # Cross-refs: genbank:acc:NP_803336;genbank:gi:29028647;genbank:GeneID :1258090 Length = 453 Score = 97.1 bits (240), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 114/449 (25%), Positives = 202/449 (44%), Gaps = 26/449 (5%) Query: 97 MARKNGKSLLISGVILYEFLFGKNPANKRQLYTAANDRKQAGIVFGMVKDRLRALMRKDP 156 M RKNGK+ ISGV Y ++ N +++ AN KQA I+F D +A+++ P Sbjct: 1 MGRKNGKTTTISGVANYAV--SQDGENGAEIHLLANVMKQARILF----DESKAMIKASP 54 Query: 157 GIKRMVKITRDELVNLDDGSTIRSFSRDTGLVDGYEPHVAVVDEYANAKTTDMIETLASG 216 ++ + RDE+ S I + D+ +DG H+ + DE K +I + + Sbjct: 55 KLRENFRPLRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNS 114 Query: 217 QVLLPSYLTFIISTAGFDMNVPMFQQNYPYAKKVLSGEEKAERYFAFIAEQDNVQEVDDP 276 + L I+TAG+ ++ P+ + L + ER F ++A D+ +++D Sbjct: 115 RAARLQPLLIYITTAGYQLDGPLVNM-VEAGRDTLDRIIEDERTFYYLASLDDDDDINDS 173 Query: 277 NSWIKSNPLLDVDTLHSQISDYLTTKLAQARADGSLNAKLVKNFNIWRQATEDSYLDFDA 336 ++WIK+NP L V +++ + G + K FNI+ E S++D+ Sbjct: 174 SNWIKANPNLGVSIDLAEMKEEWEKAKRTPDERGDF---ITKRFNIFANNDEMSFIDYPT 230 Query: 337 W-KAAELTDKPDIRGQRAWIGIDVGRTSDLFAISWLIPQEGWWWLDGYAFVASKGGI-DN 394 K ++ ++ G+ IG D+ T D A + +G V + I + Sbjct: 231 LQKNNDIISLDELEGRPCTIGYDLSETEDFTAACATFALD-----NGKVAVLTHSWIPKH 285 Query: 395 KIK--TDRIDYLAAEQHGEGEISSLESGIIDNDRVYEWLEDFIERNDIDVQGIMYDPYQF 452 K++ ++I Y+ E+ +G ++ ++ ID V W+ E V+ I YD Sbjct: 286 KVEYSNEKIPYIEWEE--DGLLTIQDNPYIDYQDVLNWIIKMNEH--YVVEKITYDRANA 341 Query: 453 GPMLTAIEKNHPEWPMVQVRQGTLTLSMPTKQFRDDVIGGRIKHSDNRIMQAAAMNAVLM 512 + + KN+ + + RQG LTLS K ++ + G+I ++N +M+ N L Sbjct: 342 FKLNQEL-KNYG-FETEETRQGALTLSPALKDLKEMFLDGKIIFNNNPLMKWYINNVQLK 399 Query: 513 SDNNGVRI-NKNKYANKIDMIDATLDAYA 540 D NG + +K KID A L+ Y Sbjct: 400 LDRNGNWLPSKQSRYRKIDGFAAFLNTYT 428 >gi|16408|lcl|protein:vir:1883 Length: 504 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:41 # MgeName: HK022 # Cross-refs: genbank:acc:NP_037663;genbank:gi:9634121;genbank:GeneID: 1262500 Length = 504 Score = 96.7 bits (239), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 126/513 (24%), Positives = 220/513 (42%), Gaps = 54/513 (10%) Query: 46 KAVKFME---ILPEPKS-GKPQPLAPFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKN 101 + + F+E I+PE K G+P L FQK I ++Y D I +S+ARKN Sbjct: 6 RVIAFIERFCIVPEGKLIGQPMRLDTFQKEFILAVYDNPAGTDMAI-------LSIARKN 58 Query: 102 GKSLLISGVILYEFLFGKNPANKRQLYTAANDRKQAGIVFGMVKDRLRALMRKDPGIKRM 161 GK+ LI+G++L L G Q+ + A R+QA IVF + ++ +P ++ + Sbjct: 59 GKTGLIAGILLAH-LVGPEAVQNTQIVSGALSREQAAIVFNLAVK----MVNLNPKLQEI 113 Query: 162 VKITRD--ELVNLDDGSTIRSFSRDTGLVDGYEPHVAVVDEYANAKTT--DMIETLASGQ 217 V IT +L+ L ++ S + G P +A++DE + D I+ + + Q Sbjct: 114 VHITPSGKKLIGLPCNVEYKALSAEGKTTHGLSPILAILDETGQVRGPQDDFIDAITTAQ 173 Query: 218 VLLPSYLTFIISTAGFDMNVPMFQQNYPYAKKVLSGEEKAERYFAFIAEQDNVQEVDDPN 277 + L +IST + + + A K K + E ++ Sbjct: 174 GAHENPLLIVISTQAAN-DADLLSIWIDDAVK-----SKDPHIVCHVYEAPKDADISKRE 227 Query: 278 SWIKSNPLLDVDTLHSQISDYLTTKLAQARADGSLNA--KLVKNFNI-WRQATEDSYLDF 334 SW+ +NP L T S+ QA G + + +N N+ R +T ++ Sbjct: 228 SWLAANPALG--TFRSE-----KDMARQAEKAGRMPSFENTFRNLNLNQRVSTVSPFISR 280 Query: 335 DAWKAAELTDKPDIRGQRAW-IGIDVGRTSDLFAISWLIPQE---GWWWLDGYAFV-ASK 389 W EL + I R W G+D+ +DL A+ +I E G W D + F + Sbjct: 281 SVW---ELCGEMPINTPRKWYAGLDLSARNDLTAL--VIAGEADDGVW--DVFPFFWTPQ 333 Query: 390 GGIDNKIKTDRIDYLAAEQHGEGEISSLESGIIDNDRVYEWLEDFIERNDIDVQGIMYDP 449 ++ + KTDR Y + EG + + +D V + + I D D+ I +D Sbjct: 334 KTLEERTKTDRAPYDVWVR--EGLLRTTPGASVDYSFVVADIAEII--GDFDLTSIAFDR 389 Query: 450 YQFGPMLTAIEKNHPEWPMVQVRQGTLTLSMPTKQFRDDVIGGRIKHSDNRIMQAAAMNA 509 ++ + P+V+ QG + ++ GR++H + ++ A+NA Sbjct: 390 WRIDQFRKDADAIGLSLPLVEFGQGFKDMGPAVDTLESLMLNGRVRHGMHPVLTMCAVNA 449 Query: 510 VLMSDNNGVR-INKNKYANKID-MIDATLDAYA 540 V++ D G R ++K+K +ID M+ T+ A Sbjct: 450 VVVKDAAGNRKLDKSKATGRIDGMVAMTMSVGA 482 >gi|1673|lcl|protein:vir:100634 Length: 553 # NCBI annotation: 77ORF003 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1476 # MgeName: 77 # Cross-refs: genbank:acc:NP_958603;genbank:gi:41189518;genbank:GeneID :2743780 Length = 553 Score = 89.4 bits (220), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 125/497 (25%), Positives = 213/497 (42%), Gaps = 51/497 (10%) Query: 64 PLAPFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGV--ILYEFLFGKNP 121 P PFQ+FII +I+ +DK+ ++ FT+ I M R GK+ LIS + L L G Sbjct: 62 PTLPFQRFIIANIF-LIDKN-TDEAFFTEFAIFMGRGGGKNGLISAISDFLSTPLHG--- 116 Query: 122 ANKRQLYTAANDRKQAGIVFGMVKDRLRALMRKDPGI--KRMVKITRDELVNLDDGSTIR 179 + + AN QA F ++ L R G K ++++ +++N S IR Sbjct: 117 VKEYHISIVANSEDQAKTSFDEIRTVLMDNKRNKTGKTPKAPYEVSKAKIINRATKSVIR 176 Query: 180 SFSRDTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTAGFDMNVPM 239 + +T DG + DE +M+ G + TF IST GF Sbjct: 177 YNTSNTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTDGF------ 230 Query: 240 FQQNYPYAKK-----VLSGEEKAERYFAFIAEQDNVQEVDDPNSWIKSNPLLDVDTLHSQ 294 ++ Y A K VLSG+ K R FAF + D+ +EVDD +W K+NP+ LH Sbjct: 231 VREGYIDAMKHKIASVLSGKVKNSRLFAFYCKLDDPKEVDDRQTWEKANPM-----LHKP 285 Query: 295 ISDYLTTKLA---QARADGSLNAKLVKNFNIWRQATEDSYLD--FDAWKAAELTDK--PD 347 +S+Y T L+ + D N F R + L+ WK T++ P+ Sbjct: 286 LSEYAKTLLSTIEEEYNDLPFNRSNKPEFMTKRMNLPEVDLEKVIAPWKEILATNREIPN 345 Query: 348 IRGQRAWIGIDVGRTSDLFAISWLIPQ-EGWWWLDGYAFVASKGGIDNKIKTDRIDYLAA 406 + Q G+D D ++ L + + + WL G++FV +G +D+ +++ Sbjct: 346 LDNQMCIGGLDFANIRDFASVGLLFRKNDDYIWL-GHSFV-RQGFLDDV----KLEPPIK 399 Query: 407 EQHGEGEISSLESGIIDNDRVYEWLEDFIERNDIDVQGIMYDPYQFGPMLTAIEKNHPEW 466 E G ++ ++ +I+ + + +W R ++ ++ D Y+ + A E + Sbjct: 400 EWEKMGLLTIVDDDVIEIEYIVDWF--LKAREKYGLEKVIADNYRTDIVRRAFEDAGIKL 457 Query: 467 PMV---QVRQGTLTLSMPTKQFRDDVIGGRIKHSDNRIMQAAAMNAV--LMSDNNGVRIN 521 ++ + G L + T + +VI G DN +M+ N + D N I Sbjct: 458 EVLRNPKAIHGLLAPRIDTMFAKHNVIYG-----DNPLMRWFTNNVAVKIKPDGNKEYIK 512 Query: 522 KNKYANKIDMIDATLDA 538 K++ K D A + A Sbjct: 513 KDEVRRKTDGFMAFVHA 529 >gi|6465|lcl|protein:vir:101288 Length: 553 # NCBI annotation: phage terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1591 # MgeName: phiNM3 # Cross-refs: genbank:acc:YP_908828;genbank:gi:118725092;genbank:GeneI D:4555859 Length = 553 Score = 89.0 bits (219), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 102/385 (26%), Positives = 171/385 (44%), Gaps = 39/385 (10%) Query: 64 PLAPFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGV--ILYEFLFGKNP 121 P PFQ+FII +I+ +DK+ ++ FT+ I M R GK+ LIS + L L G Sbjct: 62 PTLPFQRFIIANIF-LIDKN-TDEAFFTEFAIFMGRGGGKNGLISAISDFLSTPLHG--- 116 Query: 122 ANKRQLYTAANDRKQAGIVFGMVKDRLRALMRKDPGI--KRMVKITRDELVNLDDGSTIR 179 + + AN QA F ++ L R G K ++++ +++N S IR Sbjct: 117 VKEYHISIVANSEDQAKTSFDEIRTVLMDNKRNKTGKTPKAPYEVSKAKIINRATKSVIR 176 Query: 180 SFSRDTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTAGFDMNVPM 239 + +T DG + DE +M+ G + TF IST GF Sbjct: 177 YNTSNTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTDGF------ 230 Query: 240 FQQNYPYAKK-----VLSGEEKAERYFAFIAEQDNVQEVDDPNSWIKSNPLLDVDTLHSQ 294 ++ Y A K VLSG+ K R FAF + D+ +EVDD +W K+NP+ LH Sbjct: 231 VREGYIDAMKHKIASVLSGKVKNSRLFAFYCKLDDPKEVDDRQTWEKANPM-----LHKP 285 Query: 295 ISDYLTTKLA---QARADGSLNAKLVKNFNIWRQATEDSYLD--FDAWKAAELTDK--PD 347 +S+Y T L+ + D N F R + L+ WK T++ P+ Sbjct: 286 LSEYAKTLLSTIEEEYNDLPFNRSNKPEFMTKRMNLPEVDLEKVIAPWKEILATNREIPN 345 Query: 348 IRGQRAWIGIDVGRTSDLFAISWLIPQ-EGWWWLDGYAFVASKGGIDNKIKTDRIDYLAA 406 + Q G+D D ++ L + + + WL G++FV +G +D+ +++ Sbjct: 346 LDNQMCIGGLDFANIRDFASVGLLFRKNDDYIWL-GHSFV-RQGFLDDV----KLEPPIK 399 Query: 407 EQHGEGEISSLESGIIDNDRVYEWL 431 E G ++ ++ +I+ + + +W Sbjct: 400 EWEKMGLLTIVDDDVIEIEYIVDWF 424 >gi|18552|lcl|protein:vir:9506 Length: 553 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:170 # MgeName: phiN315 # Cross-refs: genbank:acc:NP_835553;genbank:gi:30043954;genbank:GeneID :1260583 Length = 553 Score = 89.0 bits (219), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 102/385 (26%), Positives = 171/385 (44%), Gaps = 39/385 (10%) Query: 64 PLAPFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGV--ILYEFLFGKNP 121 P PFQ+FII +I+ +DK+ ++ FT+ I M R GK+ LIS + L L G Sbjct: 62 PTLPFQRFIIANIF-LIDKN-TDEAFFTEFAIFMGRGGGKNGLISAISDFLSTPLHG--- 116 Query: 122 ANKRQLYTAANDRKQAGIVFGMVKDRLRALMRKDPGI--KRMVKITRDELVNLDDGSTIR 179 + + AN QA F ++ L R G K ++++ +++N S IR Sbjct: 117 VKEYHISIVANSEDQAKTSFDEIRTVLMDNKRNKTGKTPKAPYEVSKAKIINRATKSVIR 176 Query: 180 SFSRDTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTAGFDMNVPM 239 + +T DG + DE +M+ G + TF IST GF Sbjct: 177 YNTSNTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTDGF------ 230 Query: 240 FQQNYPYAKK-----VLSGEEKAERYFAFIAEQDNVQEVDDPNSWIKSNPLLDVDTLHSQ 294 ++ Y A K VLSG+ K R FAF + D+ +EVDD +W K+NP+ LH Sbjct: 231 VREGYIDAMKHKIASVLSGKVKNSRLFAFYCKLDDPKEVDDRQTWEKANPM-----LHKP 285 Query: 295 ISDYLTTKLA---QARADGSLNAKLVKNFNIWRQATEDSYLD--FDAWKAAELTDK--PD 347 +S+Y T L+ + D N F R + L+ WK T++ P+ Sbjct: 286 LSEYAKTLLSTIEEEYNDLPFNRSNKPEFMTKRMNLPEVDLEKVIAPWKEILATNREIPN 345 Query: 348 IRGQRAWIGIDVGRTSDLFAISWLIPQ-EGWWWLDGYAFVASKGGIDNKIKTDRIDYLAA 406 + Q G+D D ++ L + + + WL G++FV +G +D+ +++ Sbjct: 346 LDNQMCIGGLDFANIRDFASVGLLFRKNDDYIWL-GHSFV-RQGFLDDV----KLEPPIK 399 Query: 407 EQHGEGEISSLESGIIDNDRVYEWL 431 E G ++ ++ +I+ + + +W Sbjct: 400 EWEKMGLLTIVDDDVIEIEYIVDWF 424 >gi|19024|lcl|protein:vir:9640 Length: 576 # NCBI annotation: large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:173 # MgeName: 315.1 # Cross-refs: genbank:acc:NP_795402;genbank:gi:28876175;genbank:GeneID :1257725 Length = 576 Score = 85.1 bits (209), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 97/417 (23%), Positives = 165/417 (39%), Gaps = 38/417 (9%) Query: 65 LAPFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGVILYEFLFGKNPANK 124 L FQKFII ++ + + N+ + + I M R GK+ LISG+I Y L + Sbjct: 64 LENFQKFIISFVFLRYSETNRNV--YKKILIMMGRGGGKNGLISGIIAY-LLSPFHGIKN 120 Query: 125 RQLYTAANDRKQAGIVFGMVKDRLRALMRKDPGIKRMVKITRDELVNLDDGSTIRSFSRD 184 + AN QA F D + + +P +K + T+ E+ ++ S +R + + Sbjct: 121 YNVSLVANSEDQAKTSF----DEIYNTVESNPKLKEIYYNTKSEIKSIHTNSVMRFRTSN 176 Query: 185 TGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTAGFDMNVPMFQQNY 244 DG + V DE ++ + SG + + F I T G+ + Sbjct: 177 GNTKDGLRDGMVVFDEIHQYESNKDVRVHKSGLGKVKNAREFYIGTDGY-VREGFIDSMK 235 Query: 245 PYAKKVLSGEEKAERYFAFIAEQDNVQEVDDPNSWIKSNPLLDVDTLHSQISDY------ 298 AKKVLSG + F FI + D EVDD W K+NP+ H +SDY Sbjct: 236 DKAKKVLSGNARWNSMFPFICKIDEEHEVDDKEKWQKANPM-----FHEPMSDYAQELFD 290 Query: 299 -LTTKLAQARADGSLNAK-LVKNFNIWRQATEDSYLDFDAWKAAELTDKPDIRGQRAWIG 356 + + + D S + + K + E S + A + + PD+RG+ G Sbjct: 291 MVCEQYEEMVEDPSNREEFMTKRMDFPVMDVERSVASHEELVATK-RELPDMRGEVCIGG 349 Query: 357 IDVGRTSDLFAISWLIPQEG-WWWLDG-----------YAFVASKGGIDNKIKTDRIDYL 404 +D D A+ L + WL Y + K I+ K + I Sbjct: 350 LDYAAIRDFAAVGLLFKNGADYVWLSHSFVRKEFVDTYYGYSKRKDSINGKRQFAPI--- 406 Query: 405 AAEQHGEGEISSLESGIIDNDRVYEWLEDFIERNDIDVQGIMYDPYQFGPMLTAIEK 461 + EG ++ ++ I+ + +W + D+Q I+ D ++ + E+ Sbjct: 407 -KKWEQEGLLTVIDEASINPQYIVDWFVKMRDEEGYDLQRIVSDNFRMEILKPLFER 462 >gi|7042|lcl|protein:vir:98644 Length: 576 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1601 # MgeName: phi3396 # Cross-refs: genbank:acc:YP_001039919;genbank:gi:126011094;genbank:Ge neID:4818480 Length = 576 Score = 84.3 bits (207), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 96/417 (23%), Positives = 167/417 (40%), Gaps = 38/417 (9%) Query: 65 LAPFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGVILYEFLFGKNPANK 124 L FQKFII ++ + + N+ + + I M R GK+ LISG+I Y + + Sbjct: 64 LENFQKFIISFVFLRYSETNRNV--YKKILIMMGRGGGKNGLISGIIAY-LISPFHGIKN 120 Query: 125 RQLYTAANDRKQAGIVFGMVKDRLRALMRKDPGIKRMVKITRDELVNLDDGSTIRSFSRD 184 + AN QA F D + + +P +K + T+ E+ ++ S +R + + Sbjct: 121 YNVSLVANSEDQAKTSF----DEIYNTVESNPKLKEIYYNTKSEIKSIHTNSVMRFRTSN 176 Query: 185 TGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTAGFDMNVPMFQQNY 244 DG + V DE ++ + SG + + F I T G+ + Sbjct: 177 GNTKDGLRDGMVVFDEIHQYESNKDVRVHKSGLGKVKNAREFYIGTDGY-VREGFIDSMK 235 Query: 245 PYAKKVLSGEEKAERYFAFIAEQDNVQEVDDPNSWIKSNPLLDVDTLHSQISDY------ 298 AKKVLSG + F FI + D EVDD W K+NP+ H +SDY Sbjct: 236 DKAKKVLSGAARWNSMFPFICKIDEEHEVDDKEKWQKANPM-----FHQPMSDYAQELFD 290 Query: 299 -LTTKLAQARADGSLNAK-LVKNFNIWRQATEDSYLDFDAWKAAELTDKPDIRGQRAWIG 356 + + + D S + + K + E S + A + + PD+RG+ G Sbjct: 291 MVCEQYEEMIEDPSNREEFMTKRMDFPVMDVERSVASHEELVATK-RELPDMRGEVCIGG 349 Query: 357 IDVGRTSDLFAISWLIP-QEGWWWLDG-----------YAFVASKGGIDNKIKTDRIDYL 404 +D D A+ L ++ + WL Y + K I+ K + I Sbjct: 350 LDYAAIRDFAAVGLLFKDRDDYVWLSHSFVRKEFVDTYYGYSKRKDSINGKRQFAPI--- 406 Query: 405 AAEQHGEGEISSLESGIIDNDRVYEWLEDFIERNDIDVQGIMYDPYQFGPMLTAIEK 461 + EG ++ ++ I+ + +W + D+Q I+ D ++ + E+ Sbjct: 407 -KKWEQEGLLTVIDEASINPQYIVDWFVKMRDEEGYDLQRIVSDNFRMEILKPLFER 462 >gi|14824|lcl|protein:vir:4088 Length: 550 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:86 # MgeName: 2389 # Cross-refs: genbank:acc:NP_510983;swissprot:trembl:q8w607;genbank:gi :17488505;uniprot:Q8W607;genbank:GeneID:1260359 Length = 550 Score = 80.5 bits (197), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 100/460 (21%), Positives = 185/460 (40%), Gaps = 29/460 (6%) Query: 65 LAPFQKFIIGSIYGW--VDKDDSNIRRFTDVFISMARKNGKSLLISGVILYEFLFGKNPA 122 L PFQKFI ++ +D+D F D FI R GK+ L+S +I +E + Sbjct: 69 LFPFQKFIYAFVFAVFEIDEDGDKQLMFNDYFIYAGRGFGKNGLLSCMI-FECTTKNHGV 127 Query: 123 NKRQLYTAANDRKQAGIVFGMVKDRLRALMRKDPGIKRMVKITRDELVNLDDGSTIRSFS 182 + + A QA F +D L +K + + + + +GSTI+ + Sbjct: 128 DHYNIDIVATSEDQAKTSF---EDIYNMLEENKDTMKNVYRWNLVAIQHRKNGSTIKYKT 184 Query: 183 RDTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTAGFDMNVPMFQQ 242 + DG P DE + SG F ++T G+ + + Sbjct: 185 SNARTKDGSRPGAVAFDEEHAYEDYSNYAVHTSGLGKKERSRRFHLTTDGY-VRGSVLDD 243 Query: 243 NYPYAKKVLSGEEKAERYFAFIAEQDNVQEVDDPNSWIKSNPLLDVDTLHSQISDYLTTK 302 A++VL+GE+ + F FI + D+ EV + W K+NP++ L+ + L + Sbjct: 244 RKVLAQQVLNGEKPNSKMFPFICKLDSPDEVQNKTKWAKANPMI----LYYKP---LRIE 296 Query: 303 LAQARADGSLNAKLVKNFNIWRQ--ATEDSYLDFDAWKAAELTDK--PDIRGQRAWIGID 358 + Q D +++++ F R T+D W + T++ P ++ A GID Sbjct: 297 IDQHWDDAQSSSEIMVEFMTKRMNCPTQDPTTVAVKWDDIKATNQPMPSLKMAPAIGGID 356 Query: 359 VGRTSDLFAISWLIPQEGWWWLDGYAFVASKGGIDNKIKTDRIDYLAAEQHGEGEISSLE 418 D A+ L +EG + + F+ ++ +K + + E +G + + Sbjct: 357 FADVRDFCAVGLLFKKEGKYIFKHHTFICAES-----LKITKFKFPIHEAVEKGLATIIH 411 Query: 419 SGIIDNDRVYEWLEDFIER-NDIDVQGIMYDPYQFGPMLTAIEKNHPEWPMVQVRQGTLT 477 ID D +W F+E+ + + I D +++ + A P++QVR G + Sbjct: 412 DNYIDEDYPLQW---FLEQAKEHRIINIATDSFRYKSLKEAFTSAGA--PLIQVRSGPYS 466 Query: 478 LSMPTKQFRDDVIGGRIKHSDNRIMQAAAMNAVLMSDNNG 517 + + +I D+ +M+ N + D G Sbjct: 467 HNRLSSMVDKLFASHKIIFGDDMLMRWYCNNVAIKFDARG 506 >gi|17547|lcl|protein:vir:959 Length: 592 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:19 # MgeName: bIL285 # Cross-refs: genbank:acc:NP_076613;genbank:gi:13095721;genbank:GeneID :920277 Length = 592 Score = 79.7 bits (195), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 105/402 (26%), Positives = 174/402 (43%), Gaps = 55/402 (13%) Query: 6 KRVLDGRLITSKAVNLAVKRHQEDLKRTDWRW-HYDPNLAGKAVK--FMEILPEPKSGK- 61 K V+ G + + A +R +DL+ W + H+ + ++ + + E K GK Sbjct: 15 KDVISGNTLANIEQKQAAQRFLDDLESDKWDFKHHQFDFVIGLIEGTIVHVQGENKEGKS 74 Query: 62 ----PQPLAPFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGVILYEFLF 117 P L P+QKF+ +++G+ +K +NIRRF + I + RK GK+ + + + + Sbjct: 75 FKDTPMYLQPWQKFVCVNLFGFFEKG-TNIRRFNEALIFLPRKQGKTAFAASLTWAKNIV 133 Query: 118 GKNPANKRQLYTAANDRKQAGIVFGMVKDRLRALMRKDPGIKRMVKITRDELVNLDDG-- 175 + +K Y AN KQ FG + + + R D R+ ++ V++D G Sbjct: 134 DRASGSK--TYIVANSLKQTQESFGFLTYNVEKI-RNDVKKMRIRDNNQEHSVHVDFGDG 190 Query: 176 -STIRSFSRDTGLVDGYEPHVAVVDEYANAKTTDMIE--TLASGQVLLPSYLTFIISTAG 232 I + + +D + ++DE + K + + + Q + L ISTAG Sbjct: 191 YCDIFAIANQDDKLDSLNGNALILDEIHSWKKAGAKKYILMKNSQKAYRNKLLMGISTAG 250 Query: 233 FDMNVPMFQQNYPYAKKVLSG--EEKA-ERYFAFI--AEQD-----------NVQEVDDP 276 D+ Q KKVLSG ++KA + YF F+ AEQD + +DDP Sbjct: 251 -DIANGFLAQRVTTLKKVLSGTIKDKAYDSYFIFLCTAEQDEKGNIINPVTREITTIDDP 309 Query: 277 NSWIKSNPLLDVDTLHSQISDYLTTKLAQARADGSLNAKLV-KNFNIWRQATEDSYLDFD 335 P LDV + D L T+ QA + L A+ + K+ NI+ + D+Y D D Sbjct: 310 EVLASVTPSLDV----TVTLDDLITEARQALLEPQLKAEFLNKSLNIFTNSM-DAYFDID 364 Query: 336 ---------AWKAAELTDKPDIRGQRAWI-GIDVGRTSDLFA 367 +W EL+ P W G D+ + DL A Sbjct: 365 EFRFSNKQHSWTMEELSKLP-----ITWYGGADLSKMHDLTA 401 >gi|12641|lcl|protein:vir:80117 Length: 572 # NCBI annotation: Phage terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1877 # MgeName: bacteriophage bv1 # Cross-refs: genbank:acc:YP_001425601;genbank:gi:155042934;genbank:Ge neID:5469543 Length = 572 Score = 79.3 bits (194), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 104/383 (27%), Positives = 170/383 (44%), Gaps = 38/383 (9%) Query: 4 FIKRVLDGRLITSKAVNLAVKRHQEDLKRTDWRWHYDPNLAGKAVKFME----------I 53 + K ++DGR + + + A KR +DL+ ++ ++P A ++ +E + Sbjct: 13 YAKSIVDGRKVACRELIQAAKRFFKDLENP--KYDFNPREAEFVIQIIEKTFVHDQGERL 70 Query: 54 LPEPKSGKPQPLAPFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGVILY 113 P G+P L P+QKFII ++ G+ K + IRRF + FI + RKNGK+ LI+ + Sbjct: 71 DGTPLRGEPFLLEPWQKFIIYNLLGFYLKG-TKIRRFKEAFIFIPRKNGKTRLIAALAWA 129 Query: 114 EFLFGKNPANKRQLYTAANDRKQAGIVFGMVKDRLRALMRKDPGIKRMVKITRDELVN-- 171 L + +K +Y + +Q+ F + LR + G ++ +I + N Sbjct: 130 LALLERQSGSK--IYITSAALQQSLQSFEFILFNLRQM-----GEEQNFRILNNNQENSI 182 Query: 172 ---LDDGST-IRSFSRDTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFI 227 DGS IR+ + + D +V + DE KT + + L Sbjct: 183 SGEFSDGSIYIRALAANPDKQDSLNCNVGIADEMHAYKTPKQYNIIKEAMKAYTNKLMIG 242 Query: 228 ISTAGFDMNVPMFQQNYPYAKKVLSGEEKAERYFAFI--AEQDNVQEVD--DPNSWIKSN 283 I+TAG DM +Q+ Y KK+L E YF FI A++D EVD +P K+N Sbjct: 243 ITTAGDDMTSFCYQR-LQYCKKILDETVTDEAYFVFICKADEDENGEVDYTNPIEHEKAN 301 Query: 284 PLLDVDTLHSQISDYLTTKLAQARADGSLNAK-LVKNFNIWRQATEDSYLDFDAWKAAEL 342 P V D + QA+ D L K+ NI+ + +Y + D +K ++ Sbjct: 302 PNYGVTIR----PDDIMNDALQAQNDPQQRKDFLAKSLNIYTSPMK-AYFNIDEFKKSDR 356 Query: 343 TDKPDIRGQRAWIGIDVGRTSDL 365 I Q A +GID +DL Sbjct: 357 KYDWTIE-QLAKLGIDWFGGADL 378 >gi|5726|lcl|protein:vir:95379 Length: 573 # NCBI annotation: phage terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1567 # MgeName: GBSV1 # Cross-refs: genbank:acc:YP_764473;genbank:gi:115334627;genbank:GeneI D:5179266 Length = 573 Score = 79.3 bits (194), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 104/383 (27%), Positives = 170/383 (44%), Gaps = 38/383 (9%) Query: 4 FIKRVLDGRLITSKAVNLAVKRHQEDLKRTDWRWHYDPNLAGKAVKFME----------I 53 + K ++DGR + + + A KR +DL+ ++ ++P A ++ +E + Sbjct: 13 YAKSIVDGRKVACRELIQAAKRFFKDLENP--KYDFNPREAEFVIQIIEKTFVHDQGERL 70 Query: 54 LPEPKSGKPQPLAPFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGVILY 113 P G+P L P+QKFII ++ G+ K + IRRF + FI + RKNGK+ LI+ + Sbjct: 71 DGTPLRGEPFLLEPWQKFIIYNLLGFYLKG-TKIRRFKEAFIFIPRKNGKTRLIAALAWA 129 Query: 114 EFLFGKNPANKRQLYTAANDRKQAGIVFGMVKDRLRALMRKDPGIKRMVKITRDELVN-- 171 L + +K +Y + +Q+ F + LR + G ++ +I + N Sbjct: 130 LALLERQSGSK--IYITSAALQQSLQSFEFILFNLRQM-----GEEQNFRILNNNQENSI 182 Query: 172 ---LDDGST-IRSFSRDTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFI 227 DGS IR+ + + D +V + DE KT + + L Sbjct: 183 SGEFSDGSIYIRALAANPDKQDSLNCNVGIADEMHAYKTPKQYNIIKEAMKAYTNKLMIG 242 Query: 228 ISTAGFDMNVPMFQQNYPYAKKVLSGEEKAERYFAFI--AEQDNVQEVD--DPNSWIKSN 283 I+TAG DM +Q+ Y KK+L E YF FI A++D EVD +P K+N Sbjct: 243 ITTAGDDMTSFCYQR-LQYCKKILDETVTDEAYFVFICKADEDENGEVDYTNPIEHEKAN 301 Query: 284 PLLDVDTLHSQISDYLTTKLAQARADGSLNAK-LVKNFNIWRQATEDSYLDFDAWKAAEL 342 P V D + QA+ D L K+ NI+ + +Y + D +K ++ Sbjct: 302 PNYGVTIR----PDDIMNDALQAQNDPQQRKDFLAKSLNIYTSPMK-AYFNIDEFKKSDR 356 Query: 343 TDKPDIRGQRAWIGIDVGRTSDL 365 I Q A +GID +DL Sbjct: 357 KYDWTIE-QLAKLGIDWFGGADL 378 >gi|11068|lcl|protein:vir:78311 Length: 547 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1850 # MgeName: B025 # Cross-refs: genbank:acc:YP_001468641;genbank:gi:157325219;genbank:Ge neID:5601657 Length = 547 Score = 67.0 bits (162), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 106/483 (21%), Positives = 194/483 (40%), Gaps = 29/483 (6%) Query: 64 PLAPFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGVILYEFLFGKNPAN 123 PL ++KFI I+ + +DD + + FI++ R GK+ IS + Y F+ + N Sbjct: 62 PLDNWEKFIAPFIFLYFKEDDELF--YEEFFITLGRGGGKNGFISTLSNY-FISPLHGIN 118 Query: 124 KRQLYTAANDRKQAGIVFGMVKDRLRALMRKDPGIKRMVKITRDELVNLDDGSTIRSFSR 183 + AN QA + F V + + +P ++ + +++ S + + Sbjct: 119 NYDVSVVANSEDQAKVSFKEVFNTIDG----NPKLEGSFDAWKAQIIGKATNSVFKFQTS 174 Query: 184 DTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTAGFDMNVPMFQQN 243 + DG + DE + +I+ + G + + F I T GF + + + Sbjct: 175 NAKTKDGGREGCVIYDETHEYEDRQIIDVFSGGLGKVANPREFFIGTNGF-VRAGFYDKL 233 Query: 244 YPYAKKVLSGEEKAERYFAFIAEQDNVQEVDDPNSWIKSNPLLDVDTLHSQISDYLTTKL 303 +K +LSGE +R F FI + D+ EV + W K+NP + S S L K+ Sbjct: 234 EERSKAILSGENLNDRMFPFICKLDDPAEVKNEAMWEKANPAFEKPL--SPRSKRLLNKV 291 Query: 304 AQARADGSLNAKLVKNFNIWRQATEDSYLD--FDAWKAAELTDK--PDIRGQRAWIG-ID 358 + + N + F R + L+ W+ T++ P+++ RA IG D Sbjct: 292 RKQYEALTNNPSGREAFMTKRMNLPEVDLEKVVAPWEDILATNREMPELQ-NRACIGAFD 350 Query: 359 VGRTSDLFAISWLIPQEGWWWLDGYAFVASKGGIDNKIKTDRIDYLAAEQHGEGEISSLE 418 D A+ L + ++F A KG +D + E +G ++ ++ Sbjct: 351 YASVKDFAAVGLLFRVGDDYIWKTHSF-ARKGYLD----IANLKPPIKEWEKQGLLTIVD 405 Query: 419 SGIIDNDRVYEWLEDFIE-RNDIDVQGIMYDPYQFGPMLTAIEKNHPEWPMVQVRQGTLT 477 ID V W F+E R +Q ++ D ++ M E E +++ + + Sbjct: 406 EPTIDPRHVVNW---FVEMRETHGIQKVIGDNFRMDLMRPLFEAEGFELEIIRNPRAAHS 462 Query: 478 LSMPTKQFRDDVIGGRIKHSDNRIMQAAAMNAV--LMSDNNGVRINKNKYANKIDMIDAT 535 L P + RI DN +M+ N + D N + K+++ K D A Sbjct: 463 LLAP--RIETLFANHRIVFGDNPLMRWYTNNVAVKIKPDGNKEYLKKDEHRRKTDGFQAF 520 Query: 536 LDA 538 + A Sbjct: 521 VHA 523 >gi|3559|lcl|protein:vir:101786 Length: 556 # NCBI annotation: gp9 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1515 # MgeName: 244 # Cross-refs: genbank:acc:YP_654764;genbank:gi:109302762;genbank:GeneI D:4156221 Length = 556 Score = 62.4 bits (150), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 110/465 (23%), Positives = 190/465 (40%), Gaps = 55/465 (11%) Query: 28 EDLKRTDWRWHYDPNLAGKAVKFME-ILPEPK---SGKPQPLAPFQKF-IIGSIYGWVDK 82 +D++ T+ H+ A KA F E IL K + K L +Q+ I+ ++G V+ Sbjct: 9 DDIECTEVGAHFCVPRANKAQAFFEEILVHTKGQYTRKKFILEDWQRDDIVRPLFGRVEY 68 Query: 83 DD---SNIRRFTDVFISMARKNGKSLLISGVILYEFLFGKNPANKRQLYTAANDRKQAGI 139 D RR+ +I +ARKNGK+ L++G++LY L + ++Y A D+KQA + Sbjct: 69 SDEFGCYKRRYEIAWIELARKNGKTELLAGIMLY--LLVADGEQSGEIYGVARDKKQAAL 126 Query: 140 VFGMVKDRLRALMRKDPGIKRMVKIT--RDELVNLDDGSTIRSFSRDTGLVDGYEPHVAV 197 F D +++ P + + +K+ + + + S + D G P Sbjct: 127 AF----DVAAQMVKFSPILSKRLKVVDYKKRIYDAKTNSFYDVIAADAKSALGSNPSGCG 182 Query: 198 VDEYANAKTTDMIETL----ASGQVLLPSYLTFIISTAGFDMNVPMFQQNYPYAKKVLSG 253 DE + M ++L SG + P L +TAG D + ++V+ Sbjct: 183 ADEILAWQDGGMWDSLRTGMGSGARVQP--LMVASTTAGNDTE-GFAGLKHREMERVMED 239 Query: 254 EEKAERYFAFIAEQDNVQEVDDPN--SWIKSNP----LLDVDTLHSQISDYLTTKLAQAR 307 + + F+ ++ E D N W +NP L + + Q ++ +A+ Sbjct: 240 PDNPDFKHIFVYMRNTPMEEDPWNEECWPHANPALGRFLSWEAMRKQAAEARNNPIAEM- 298 Query: 308 ADGSLNAKLVKNFNIWRQATEDSYLDFDAW---KAAELTDKPDI----RGQRAWIGIDVG 360 A N W+ +T ++ AW K D+ GQ W G+D+ Sbjct: 299 ------AFRQFKLNQWQNST-IRWMRMPAWDECKGTVFKSNKDLFDAFAGQSCWFGLDLA 351 Query: 361 RTSDLFAISWLIPQEGWWWLDGYAFVASKGGIDNK--IKTDRID--YLAAEQHGEGEISS 416 DL +I +L PQ DG + + I K DR++ A E G + Sbjct: 352 ARRDLCSICYLFPQS-----DGSVDLLWRHWIPESALAKLDRLNDGRFAKEFVPGGWLKV 406 Query: 417 LESGIIDNDRVYEWLEDFIERNDIDVQGIMYDPYQFGPMLTAIEK 461 E ++D D VY+ +E +R + G D + P++ IEK Sbjct: 407 TEGDVLDFDVVYDDIEADSKR--FTILGGDADQWSSDPVIQEIEK 449 >gi|6615|lcl|protein:vir:95986 Length: 553 # NCBI annotation: ORF005 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1594 # MgeName: 2638A # Cross-refs: genbank:acc:YP_239799;genbank:gi:66395455;genbank:GeneID :5132903 Length = 553 Score = 61.6 bits (148), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 106/472 (22%), Positives = 188/472 (39%), Gaps = 39/472 (8%) Query: 68 FQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGVILYEFLFGKNPANKRQL 127 FQKFI ++ + + D+ F++ FISMAR GK+ IS + + FL + K + Sbjct: 66 FQKFITCFVFLY--EADTLTPYFSEFFISMARGGGKNGYISTLGAF-FLTPLHGIPKYNM 122 Query: 128 YTAANDRKQAGIVFGMVKDRLRA---LMRKDPGIKRMVKITRDELVNLDDGSTIRSFSRD 184 AN KQA + F + D + + +RKD I++ V ++ S F D Sbjct: 123 SVVANSEKQAQVSFQEIYDMIESNDLYVRKDKP-NNPFNISK---VLIEGISMKAQFVFD 178 Query: 185 TG---LVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTAGFDMNVPMFQ 241 T DG DE + +I SG + TF I T G + Sbjct: 179 TSNEKTKDGAREGCVFFDEIHAYEKDTIINVKRSGLGKVAHPRTFYIGTDG-HVREGFLD 237 Query: 242 QNYPYAKKVLSGEEKAERYFAFIAEQDNVQEVDDPNSWIKSNPLLDVDTLHSQISDY--- 298 + A VL GE +R F FI + D+ +E+ D + W K+NP+ + + ++DY Sbjct: 238 KLKERAANVLIGESPEDRLFPFICKIDDKEELHDFDMWQKANPMFE-----APMNDYGRQ 292 Query: 299 LTTKLAQARADGSLNAK-----LVKNFNIWRQATEDSYLDFDAWKAAELTDKPDIRGQRA 353 L ++ Q N + K N+ ++ +D A D P + Sbjct: 293 LFQEVKQQYLSLKFNPSGRTEFMTKRMNLPETDSQSVVAPWDDILATN-RDMPSLDNHEC 351 Query: 354 WIGIDVGRTSDLFAISWLIPQEGWWWLDGYAFVASKGGIDNKIKTDRIDYLAAEQHGEGE 413 G+D D A+ L + + ++F A K +D I A +G Sbjct: 352 IGGLDYASLKDFAAVGLLFKVDDEYIWKTHSF-ARKAFLDEYQLKPPIHEWAE----KGL 406 Query: 414 ISSLESGIIDNDRVYEWLEDFIE-RNDIDVQGIMYDPYQFGPMLTAIEKNHPEWPMVQVR 472 ++ ++ I + +W F+E + ++ ++ D ++ + E+N ++ +V+ Sbjct: 407 LTIVDEPTISPKHIIDW---FLEAQKHYGLKKVIADNFRMDLLRPLFEENDIDYEVVKNT 463 Query: 473 QGTLTLSMPTKQFRDDVIGGRIKHSDNRIMQAAAMNAVLMSDNNGVRINKNK 524 + +L P + D I DN +M+ N + D G + + K Sbjct: 464 RAIQSLLAP--RVEDMFAQQNIIFGDNPLMRWYTGNVAVKIDKYGNKTYEKK 513 >gi|4336|lcl|protein:vir:94893 Length: 540 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1532 # MgeName: P008 # Cross-refs: genbank:acc:YP_762513;genbank:gi:115304212;genbank:GeneI D:5141206 Length = 540 Score = 57.8 bits (138), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 109/500 (21%), Positives = 212/500 (42%), Gaps = 42/500 (8%) Query: 65 LAPFQKFIIGSIYGW--VDKDDSNIRRFTDVFISMARKNGKSLLISGVILYEFLFGKNPA 122 L P Q++ + G+ VD+ + ++F+++ R +GKS L++ +L + G Sbjct: 66 LLPTQRWWYELMLGYDMVDEKGIQVNLVNEIFLNLGRGSGKSSLMATRVLNWMILGGQYG 125 Query: 123 NKRQLYTAANDRKQAGIVFGMVKDRLRAL-MRKDPGIKRMVKITRDELVNLDDGSTIRSF 181 + + A D QA VF V+++ A + ++ K T+ L +T + Sbjct: 126 GESLV--IAYDNTQARHVFDQVRNQTEASDTLRVYNENKIFKSTKQGLEFTSFKTTFKKQ 183 Query: 182 SRDTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTAG-------FD 234 + DT G + + DE + D+ E++ G I T+G +D Sbjct: 184 TNDTLRAQGGNSSLNIFDE-VHTYGEDITESVNKGSRQKQDNWQSIYITSGGLKRDGLYD 242 Query: 235 MNVPMFQQNYPYAKKVLSGEEKAERYFAFIAEQDNVQEVDDPNSWIKSNPLL-DVDTLHS 293 V F+ + +R F + +N ++V D +W + PL+ DV Sbjct: 243 KLVERFKSEEEFYN---------DRSFGLLYMLENHEQVKDKKNWTMALPLIGDVPKWSG 293 Query: 294 QISDYLTTKLAQARADGSLNAKLVKNFNIWRQATEDSYLDFDAWKAAELTD--KPDIRGQ 351 I +Y +LAQ D +L K + FN+ + +Y + + +LTD Sbjct: 294 VIEEY---ELAQ--GDPALQNKFLA-FNMGLPMQDTAY--YFTPQDTKLTDFNLSVFNKN 345 Query: 352 RAWIGIDVGRTSDLFAISWLIPQEGWWWLDGYAFVASKGGIDNKIKTDRIDYLAAEQHGE 411 R ++GID+ DL A+S++ EG + Y S ++ T++ + L E Sbjct: 346 RTYVGIDLSLIGDLTAVSFVCELEGKTY--SYTLTFSVRSQYEQLDTEQQE-LWTEFVDR 402 Query: 412 GEISSLESGIIDNDRVYEWLEDFIERNDIDVQGIMYDPYQFGPMLTAIEKNHPEW---PM 468 GE+ L++ I+ + + ++ DF + ++ I YDP ++ + IE+ + Sbjct: 403 GELILLDTEYINVNDLIPYINDFRSKTGCRLRKIGYDPARYEILKGLIERYFFDKDGDNQ 462 Query: 469 VQVRQGTLTLSMPTKQFRDDVIGGRIKHSDNRIMQAAAMN-AVLMSDNNGVRINKNKYAN 527 +RQG +++ K + ++ ++ H + ++MQ A N AV + + K + Sbjct: 463 RAIRQG-FSMNDYIKLLKSKLVENKLIH-NQKVMQWALNNTAVKIGQSGDYMYTKKLEKD 520 Query: 528 KIDMIDATLDAYAIAFKEDL 547 KID A A +A +++ Sbjct: 521 KIDPTVALTMALEMAVSDEV 540 >gi|1848|lcl|protein:vir:93873 Length: 540 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1479 # MgeName: 712 # Cross-refs: genbank:acc:YP_764262;genbank:gi:115315575;genbank:GeneI D:5141567 Length = 540 Score = 57.4 bits (137), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 109/500 (21%), Positives = 212/500 (42%), Gaps = 42/500 (8%) Query: 65 LAPFQKFIIGSIYGW--VDKDDSNIRRFTDVFISMARKNGKSLLISGVILYEFLFGKNPA 122 L P QK+ + G+ VD+ + ++F+++ R +GKS L++ +L + G Sbjct: 66 LHPVQKWWYELMLGYDMVDEKGIQVNLVNEIFLNLGRGSGKSSLMATRVLNWMILGGQYG 125 Query: 123 NKRQLYTAANDRKQAGIVFGMVKDRLRAL-MRKDPGIKRMVKITRDELVNLDDGSTIRSF 181 + + A D QA VF V+++ A + ++ K T+ L +T + Sbjct: 126 GESLV--IAYDNTQARHVFDQVRNQTEASDTLRVYNENKIFKSTKQGLEFTSFKTTFKKQ 183 Query: 182 SRDTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTAG-------FD 234 + DT G + + DE + D+ E++ G I T+G +D Sbjct: 184 TNDTLRAQGGNSSLNIFDE-VHTYGEDITESVNKGSRQKQDNWQSIYITSGGLKRDGLYD 242 Query: 235 MNVPMFQQNYPYAKKVLSGEEKAERYFAFIAEQDNVQEVDDPNSWIKSNPLL-DVDTLHS 293 V F+ + +R F + +N ++V D +W + PL+ DV Sbjct: 243 KLVERFKSEEEFYN---------DRSFGLLYMLENHEQVKDKKNWTMALPLIGDVPKWSG 293 Query: 294 QISDYLTTKLAQARADGSLNAKLVKNFNIWRQATEDSYLDFDAWKAAELTD--KPDIRGQ 351 I +Y +LAQ D +L K + FN+ + +Y + + +LTD Sbjct: 294 VIEEY---ELAQ--GDPALQNKFLA-FNMGLPMQDTAY--YFTPQDTKLTDFNLSVFNKN 345 Query: 352 RAWIGIDVGRTSDLFAISWLIPQEGWWWLDGYAFVASKGGIDNKIKTDRIDYLAAEQHGE 411 R ++GID+ DL A+S++ EG + + S ++ T++ + L E Sbjct: 346 RTYVGIDLSLIGDLTAVSFVCELEGKTY--SHTLTFSVRSQYEQLDTEQQE-LWTEFVDR 402 Query: 412 GEISSLESGIIDNDRVYEWLEDFIERNDIDVQGIMYDPYQFGPMLTAIEKNHPEW---PM 468 GE+ L++ I+ + + ++ DF + ++ I YDP ++ + IE+ + Sbjct: 403 GELILLDTEYINVNDLIPYINDFRTKTGCRLRKIGYDPARYEILKGLIERYFFDKDGDNQ 462 Query: 469 VQVRQGTLTLSMPTKQFRDDVIGGRIKHSDNRIMQAAAMN-AVLMSDNNGVRINKNKYAN 527 +RQG +++ K + ++ ++ H + ++MQ A N AV + + K + Sbjct: 463 RAIRQG-FSMNDYIKLLKSKLVENKLIH-NQKVMQWALNNTAVKIGQSGDYMYTKKLEKD 520 Query: 528 KIDMIDATLDAYAIAFKEDL 547 KID A A +A +++ Sbjct: 521 KIDPTVALTMALEMAVSDEV 540 >gi|15547|lcl|protein:vir:856 Length: 540 # NCBI annotation: putative terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:18 # MgeName: bIL170 # Cross-refs: genbank:acc:NP_047115;genbank:gi:9630568;genbank:GeneID: 1261755 Length = 540 Score = 57.0 bits (136), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 108/500 (21%), Positives = 212/500 (42%), Gaps = 42/500 (8%) Query: 65 LAPFQKFIIGSIYGW--VDKDDSNIRRFTDVFISMARKNGKSLLISGVILYEFLFGKNPA 122 L P QK+ + G+ VD+ + ++F+++ R +GKS L++ +L + G Sbjct: 66 LHPTQKYWYELMLGYDMVDEKGVQVNLINEIFLNLGRGSGKSSLMATRVLNWMILGGQYG 125 Query: 123 NKRQLYTAANDRKQAGIVFGMVKDRLRAL-MRKDPGIKRMVKITRDELVNLDDGSTIRSF 181 + + A D QA VF V+++ A + ++ K T+ L +T + Sbjct: 126 GESLV--IAYDNTQARHVFDQVRNQTEASDTLRVYNENKIFKSTKQGLEFTAFKTTFKKQ 183 Query: 182 SRDTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTAG-------FD 234 + DT G + + DE + D+ E++ G I T+G +D Sbjct: 184 TNDTLRAQGGNSSLNIFDE-VHTYGEDITESVNKGSRQKQDNWQSIYITSGGLKRDGLYD 242 Query: 235 MNVPMFQQNYPYAKKVLSGEEKAERYFAFIAEQDNVQEVDDPNSWIKSNPLL-DVDTLHS 293 V F+ + +R F + +N ++V D +W + PL+ DV Sbjct: 243 KLVERFKSEEEFYN---------DRSFGLLYMLENHEQVKDKKNWTMALPLIGDVPKWSG 293 Query: 294 QISDYLTTKLAQARADGSLNAKLVKNFNIWRQATEDSYLDFDAWKAAELTD--KPDIRGQ 351 I +Y +LAQ D +L K + FN+ + +Y + + +LT+ Sbjct: 294 VIEEY---ELAQ--GDPALQNKFLA-FNMGLPMQDTAY--YFTPQDTKLTEFNLSVFNKN 345 Query: 352 RAWIGIDVGRTSDLFAISWLIPQEGWWWLDGYAFVASKGGIDNKIKTDRIDYLAAEQHGE 411 R ++GID+ DL A+S++ EG + + S ++ T++ + L E Sbjct: 346 RTYVGIDLSLIGDLTAVSFVCELEGKTY--SHTLTFSVRSQYEQLDTEQQE-LWTEFVDR 402 Query: 412 GEISSLESGIIDNDRVYEWLEDFIERNDIDVQGIMYDPYQFGPMLTAIEKNHPEW---PM 468 GE+ L++ I+ + + ++ DF + ++ I YDP ++ + IE+ + Sbjct: 403 GELILLDTEYINVNDLIPYINDFRSKTGCRLRKIGYDPARYEILKGLIERYFFDKDGDNQ 462 Query: 469 VQVRQGTLTLSMPTKQFRDDVIGGRIKHSDNRIMQAAAMN-AVLMSDNNGVRINKNKYAN 527 +RQG +++ K + ++ ++ H + ++MQ A N AV + + K + Sbjct: 463 RAIRQG-FSMNDYIKLLKSKLVENKLIH-NQKVMQWALNNTAVKIGQSGDYMYTKKLEKD 520 Query: 528 KIDMIDATLDAYAIAFKEDL 547 KID A A +A +++ Sbjct: 521 KIDPTVALTMALEMAVSDEV 540 >gi|2310|lcl|protein:vir:93989 Length: 540 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1487 # MgeName: jj50 # Cross-refs: genbank:acc:YP_764316;genbank:gi:115315630;genbank:GeneI D:5176576 Length = 540 Score = 52.0 bits (123), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 88/410 (21%), Positives = 173/410 (42%), Gaps = 36/410 (8%) Query: 65 LAPFQKFIIGSIYGW--VDKDDSNIRRFTDVFISMARKNGKSLLISGVILYEFLFGKNPA 122 L P Q++ + G+ +D+ + ++F+++ R +GKS L++ +L + G Sbjct: 66 LLPTQRWWYELMLGYDMIDEKGVQVNLINEIFLNLGRGSGKSSLMATRVLNWMILGGQYG 125 Query: 123 NKRQLYTAANDRKQAGIVFGMVKDRLRAL-MRKDPGIKRMVKITRDELVNLDDGSTIRSF 181 + + A D QA VF V+++ A + ++ K T+ L +T + Sbjct: 126 GESLV--IAYDNTQARHVFDQVRNQTEASDTLRVYNENKIFKSTKQGLEFTSFKTTFKKQ 183 Query: 182 SRDTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTAG-------FD 234 + DT G + + DE + D+ E++ G I T+G +D Sbjct: 184 TNDTLRAQGGNSSLNIFDE-VHTYGEDITESVNKGSRQKQDNWQSIYITSGGLKRDGLYD 242 Query: 235 MNVPMFQQNYPYAKKVLSGEEKAERYFAFIAEQDNVQEVDDPNSWIKSNPLL-DVDTLHS 293 V F+ + +R F + +N ++V D +W + PL+ V Sbjct: 243 KLVERFKSEEEFYN---------DRSFGLLYMLENHEQVKDKKNWTMALPLIGSVPKWSG 293 Query: 294 QISDYLTTKLAQARADGSLNAKLVKNFNIWRQATEDSYLDFDAWKAAELTD--KPDIRGQ 351 I +Y +LAQ D +L K + FN+ + +Y + + +LTD Sbjct: 294 VIEEY---ELAQ--GDPALQNKFLA-FNMGLPMQDTAY--YFTPQDTKLTDFNLSVFNKN 345 Query: 352 RAWIGIDVGRTSDLFAISWLIPQEGWWWLDGYAFVASKGGIDNKIKTDRIDYLAAEQHGE 411 R ++GID+ DL A+S++ EG + + S ++ T++ + L E Sbjct: 346 RTYVGIDLSLIGDLTAVSFVCELEGKTY--SHTLTFSVRSQYEQLDTEQQE-LWTEFVDR 402 Query: 412 GEISSLESGIIDNDRVYEWLEDFIERNDIDVQGIMYDPYQFGPMLTAIEK 461 GE+ L++ I+ + + ++ DF + ++ I YDP ++ + IE+ Sbjct: 403 GELILLDTEYINVNDLIPYINDFRTKTGCRLRKIGYDPARYEILKGLIER 452 >gi|19080|lcl|protein:vir:1659 Length: 540 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:34 # MgeName: sk1 # Cross-refs: genbank:acc:NP_044948;genbank:gi:9629655;genbank:GeneID: 1261297 Length = 540 Score = 51.6 bits (122), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 106/500 (21%), Positives = 210/500 (42%), Gaps = 42/500 (8%) Query: 65 LAPFQKFIIGSIYGW--VDKDDSNIRRFTDVFISMARKNGKSLLISGVILYEFLFGKNPA 122 L P Q++ + G+ +D+ + ++F+++ R +GKS L++ +L + G Sbjct: 66 LLPTQRWWYELMLGYDMIDEKGVQVNLINEIFLNLGRGSGKSSLMATRVLNWMILGGQYG 125 Query: 123 NKRQLYTAANDRKQAGIVFGMVKDRLRAL-MRKDPGIKRMVKITRDELVNLDDGSTIRSF 181 + + A D QA VF V+++ A + ++ K T+ L +T + Sbjct: 126 GESLV--IAYDNTQARHVFDQVRNQTEASDTLRVYNENKIFKSTKQGLEFASFKTTFKKQ 183 Query: 182 SRDTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTAG-------FD 234 + DT G + + DE + D+ E++ G I T+G +D Sbjct: 184 TNDTLRAQGGNSSLNIFDE-VHTYGEDITESVNKGSRQKQDNWQSIYITSGGLKRDGLYD 242 Query: 235 MNVPMFQQNYPYAKKVLSGEEKAERYFAFIAEQDNVQEVDDPNSWIKSNPLL-DVDTLHS 293 V F+ + +R F + +N ++V D +W + PL+ V Sbjct: 243 KLVERFKSEEEFYN---------DRSFGLLYMLENHEQVKDKKNWTMALPLIGSVPKWSG 293 Query: 294 QISDYLTTKLAQARADGSLNAKLVKNFNIWRQATEDSYLDFDAWKAAELTD--KPDIRGQ 351 I +Y +LAQ D +L K + FN+ + +Y + + +LTD Sbjct: 294 VIEEY---ELAQ--GDPALQNKFLA-FNMGLPMQDTAY--YFTPQDTKLTDFNLSVFNKN 345 Query: 352 RAWIGIDVGRTSDLFAISWLIPQEGWWWLDGYAFVASKGGIDNKIKTDRIDYLAAEQHGE 411 R ++GID+ DL A+S++ EG + + S ++ T++ + L E Sbjct: 346 RTYVGIDLSLIGDLTAVSFVCELEGKTY--SHTLTFSVRSQYEQLDTEQQE-LWTEFVDR 402 Query: 412 GEISSLESGIIDNDRVYEWLEDFIERNDIDVQGIMYDPYQFGPMLTAIEKNHPEW---PM 468 GE+ L++ I+ + + + DF + ++ I YDP ++ + IE+ + Sbjct: 403 GELILLDTEYINVNDLIPHINDFRTKTGCRLRKIGYDPARYEILKGLIERYFFDKDGDNQ 462 Query: 469 VQVRQGTLTLSMPTKQFRDDVIGGRIKHSDNRIMQAAAMN-AVLMSDNNGVRINKNKYAN 527 +RQG +++ K + ++ ++ H + ++MQ A N AV + + K + Sbjct: 463 RAIRQG-FSMNDYIKLLKSKLVENKLIH-NQKVMQWALNNTAVKIGQSGDYMYTKKLEKD 520 Query: 528 KIDMIDATLDAYAIAFKEDL 547 KID A A +A +++ Sbjct: 521 KIDPTVALTMALEMAVSDEV 540 >gi|10332|lcl|protein:vir:97407 Length: 514 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1675 # MgeName: Q54 # Cross-refs: genbank:acc:YP_762597;genbank:gi:115304298;genbank:GeneI D:5130610 Length = 514 Score = 50.1 bits (118), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 85/377 (22%), Positives = 154/377 (40%), Gaps = 37/377 (9%) Query: 175 GSTIRSFSRDTGLVDGYEPHVAVVDEYA---NAKTTDMIETLASGQVLLPSYLTFI---- 227 G+T R S ++G +AVVDE+ N + E L + LL LT Sbjct: 146 GATFRIVSAADSALNGGREKLAVVDEFGTFPNNPLPTIREGLEKNEGLL---LTITSNNK 202 Query: 228 ISTAGFDMNVPMFQQNYPYAKKVLSGEEKAERYFAFIAEQDNVQEVDDPNSWIKSNPLLD 287 + +D + F+ + E + + I E D+ +++DPN W K+NP LD Sbjct: 203 VRGGAYDEELDTFRG--------YNDEMDNFKQWGLIFELDDYSQIEDPNEWYKANPALD 254 Query: 288 VDTLHSQISDYLTTKLAQARADG-SLNAKLVKNFNIWRQATEDSYLDFDAWKAAELTDKP 346 + + ++ +T +L AR N K FN A + + +L + Sbjct: 255 -EAKGTVSTETITRELNAARHSTIKANNLFSKRFNFSVNAVTSFFTAEEIEIVTDLDFEK 313 Query: 347 DIRGQRAWIGIDVGRTSDLFAISWLIPQEGWWWLDGYAFVASKGGIDNKIKTDRIDYLAA 406 + A +G D + D + L E ++ Y I K D+ +L+ Sbjct: 314 VFYDKWAVLGCDFSLSGDTWGNVLLTKVEDTLYI--YPI-----PIRPKNVADKYKHLSG 366 Query: 407 EQHGEGEISSLESGIIDNDRVYEWLEDFIERNDIDVQGIMYDPYQFGPMLTAIEKNHPEW 466 + + + + ++ + + L D ++ I + GI YDP L E+N + Sbjct: 367 TFYHDEDKNDTQAAV-------KLLFDKLQELRIGLVGIGYDPAYSANFLYLFEQNKIKA 419 Query: 467 PMVQ-VRQGTLTLSMPTKQFRDDVIGGRIKHSDNRIMQAAAMNA-VLMSDNNGVRINKNK 524 +++ V+Q T+S + ++ R ++ IM+ NA V D VR+ K Sbjct: 420 RLMEKVKQNAFTVSQHIMSLQ-RLLKTRGLLYNSEIMKQHLRNARVKYKDTTQVRLVKVS 478 Query: 525 YANKIDMIDATLDAYAI 541 +KID++DA ++A A+ Sbjct: 479 DQSKIDLVDAAVNALAV 495 >gi|19384|lcl|protein:vir:7851 Length: 887 # NCBI annotation: gp8 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:150 # MgeName: CJW1 # Cross-refs: genbank:acc:NP_817458;genbank:gi:29565887;genbank:GeneID :1259165 Length = 887 Score = 42.7 bits (99), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 87/392 (22%), Positives = 153/392 (39%), Gaps = 58/392 (14%) Query: 102 GKSL-------LISGVILYEFLFGKNPANKRQLYTAANDRKQAGIVFGMVKDRLRALMRK 154 GKSL L++G++LY L + ++Y A D+KQA + F D +++ Sbjct: 415 GKSLTPTHNTELLAGIMLY--LLVADGEQSGEIYGVARDKKQAALAF----DVAAQMVKF 468 Query: 155 DPGIKRMVKIT--RDELVNLDDGSTIRSFSRDTGLVDGYEPHVAVVDEYANAKTTDMIET 212 P + + +K+ + + + S + D G P DE + M ++ Sbjct: 469 SPILSKRLKVVDYKKRIYDAKTNSFYDVIAADAKSALGSNPSGCGADEILAWQDGGMWDS 528 Query: 213 L----ASGQVLLPSYLTFIISTAGFDMNVPMFQQNYPYAKKVLSGEEKAERYFAFIAEQD 268 L SG + P L +TAG D + ++V+ + + F+ ++ Sbjct: 529 LRTGMGSGARVQP--LMVASTTAGNDTE-GFAGLKHREMERVMEDPDNPDFKHIFVYMRN 585 Query: 269 NVQEVDDPN--SWIKSNPLLDVDTLHSQISDYLTTKLAQARADGSLNAKLVK------NF 320 E D N W +NP L +L+ + + +A + N + + Sbjct: 586 TPMEEDPWNEECWPHANPAL---------GRFLSWEAMRKQAAEARNNPIAEMAFRQFKL 636 Query: 321 NIWRQATEDSYLDFDAW---KAAELTDKPDI----RGQRAWIGIDVGRTSDLFAISWLIP 373 N W+ +T ++ AW K D+ GQ W G+D+ DL +I +L P Sbjct: 637 NQWQNST-IRWMRMPAWDECKGTVFKSNKDLFDAFAGQSCWFGLDLAARRDLCSICYLFP 695 Query: 374 QEGWWWLDGYAFVASKGGIDNK--IKTDRID--YLAAEQHGEGEISSLESGIIDNDRVYE 429 Q DG + + I K DR++ A E G + E ++D D VY+ Sbjct: 696 QS-----DGSVDLLWRHWIPESALAKLDRLNDGRFAKEFVPGGWLKVTEGDVLDFDVVYD 750 Query: 430 WLEDFIERNDIDVQGIMYDPYQFGPMLTAIEK 461 +E +R + G D + P++ IEK Sbjct: 751 DIEADAKR--FTILGGDADQWSSDPVIQEIEK 780 Score = 28.9 bits (63), Expect = 0.19, Method: Compositional matrix adjust. Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 8/93 (8%) Query: 28 EDLKRTDWRWHYDPNLAGKAVKFME-ILPEPK---SGKPQPLAPFQKF-IIGSIYGWVDK 82 +D++ T+ H+ A KA F E IL K + K L +Q+ I+ ++G V+ Sbjct: 9 DDIECTEVGAHFCVPRANKAQAFFEEILVHTKGQYTRKKFILEDWQRDDIVRPLFGRVEY 68 Query: 83 DD---SNIRRFTDVFISMARKNGKSLLISGVIL 112 D RR+ +I +ARKNGK+L + IL Sbjct: 69 SDEFGCYKRRYEIAWIELARKNGKALDVETPIL 101 >gi|19608|lcl|protein:vir:4081 Length: 518 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:85 # MgeName: c2 # Cross-refs: genbank:acc:NP_043560;genbank:gi:9628694;genbank:GeneID: 1261154 Length = 518 Score = 42.7 bits (99), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 109/546 (19%), Positives = 207/546 (37%), Gaps = 75/546 (13%) Query: 10 DGRLITSKAVNLAVKRHQEDLKRTDWRWHYDPNLAGKAVKFMEILPEPKSGKPQPLAPFQ 69 +G +I +A H+ D K+ A K F+E + + + P+ Sbjct: 14 NGEMIKLLKKKVAKIEHEIDYKK-----------AEKIFDFIEEFMTLPNNERFKIIPYH 62 Query: 70 KFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGVILYEFLFGKNPANKRQLYT 129 K ++ +Y + + + + R N KS+L + L E P + L Sbjct: 63 KAVLTLMY-------CTPYQIDEFVVIVGRSNAKSILDVMIALIELFLFPKPNSVIALMA 115 Query: 130 AANDRKQAGIVFGMVKDRLRALMRKDPGI----KRMVKITRDELVNLDD------GSTIR 179 D+ + ++ RA+ I K K+ +++++ D+ G+ I Sbjct: 116 TKKDQAEK-----ILMKHFRAMGNCQGTIINKFKNQFKLNKEQILVKDNSILKSKGTEIS 170 Query: 180 SFSRDTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTAGFDMNVPM 239 ++ + +DG + ++DE+ K +I T+ G L + T IST + Sbjct: 171 IYASNEDTLDGGREQLVIIDEFGAFKKNPLI-TIRQG--LRKNKGTLFISTTNNVIRGGA 227 Query: 240 FQQNYPYAKKVLSGEEKAERYFAFIAEQDNVQEVDDPNSWIKSNPLLDVD-TLHSQISDY 298 + K+ + ++ + ++ F D+ EV D + +IK+NP L +L D+ Sbjct: 228 YDDELESWKEWVKDDDFS--HWVFYYALDDYDEVKDSSKYIKANPALGYTLSLEDIQKDF 285 Query: 299 LTTKLAQARADGSLNAKLV-KNFNIWRQATEDSYLDFDAWKAAELTDKP-----DIRGQR 352 + A + AK++ K FN+ + DS F + +L DK D G+ Sbjct: 286 IG-----AIGNPVKMAKIITKRFNL---SMTDSTTIF----SKQLVDKCLVPPLDFSGRL 333 Query: 353 AWIGIDVGRTSDLFAISWLIPQEGWWWLDGYAFVASKGGIDNKIKTDRIDYLAAEQHGEG 412 IG D D++ + G ++ + D+ +L EG Sbjct: 334 VAIGSDFSVRGDVWGTVIGYRENGHYYFKAIPVMPESA-------EDKFKHLGETITHEG 386 Query: 413 EISSLESGIIDNDRVYEWLEDFIERNDIDVQGIMYDPYQFGPMLTAIEKNHPEWPMVQVR 472 I+N W N + YDP + E+ + +V Sbjct: 387 ---------INNMTDEAWDAFMSAMNGSVPIALNYDPNYAKNFIDKFEQTYDIEFYNKVM 437 Query: 473 QGTLTLSMPTKQFRDDVIGGRIKHSDNRIMQAAAMNA-VLMSDNNGVRINKNKYANKIDM 531 Q + LS + + + G+I H D++++ MNA ++D +RI K Y +KID+ Sbjct: 438 QNSFKLSNTLEATQKLMEEGKI-HFDSKLLAVHLMNAETKINDFGLMRIIKKGYTDKIDL 496 Query: 532 IDATLD 537 DA ++ Sbjct: 497 ADALIN 502 >gi|830|lcl|protein:vir:93598 Length: 553 # NCBI annotation: putative large subunit terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:157 # MgeName: phi 4795 # Cross-refs: genbank:acc:YP_001449292;genbank:gi:157166040;goa:Q6H9U9 ;interpro:IPR001453;interpro:IPR005021;uniprot:Q6H9U9;ge nbank:GeneID:5580420 Length = 553 Score = 42.7 bits (99), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 107/499 (21%), Positives = 189/499 (37%), Gaps = 55/499 (11%) Query: 72 IIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGVILYEFLFGKNPANKRQL--YT 129 ++ +++G D + +R +VFI + +KN KS L +G+++ L N RQ YT Sbjct: 64 LVAALFGSYDAQ-TGVRHIKEVFILIPKKNSKSTLAAGIMMTALLL-----NWRQAAGYT 117 Query: 130 A-ANDRKQAGIVFGMVKDRLRALMRKDPGIKRMVKITRDELVNLDDGSTIRSFSRDTGLV 188 A + A F +D +R D + I + + +T++ + D V Sbjct: 118 ILAPTVEVAANAFNPARDMVRRDDDLDDLCQVQTHIR--TITHRVTDTTLKVVAADPNTV 175 Query: 189 DGYEPHVAVVDEY----ANAKTTDMIETLASGQVLLPSYLTFIISTAGFDMNVPMFQQNY 244 G + ++DE K DM+ G P +T + +F+Q Sbjct: 176 SGIKSVGTLIDELWLFGKQYKAEDMLREAIGGLASRPEGFVVYTTTQSNEPPAGVFRQKL 235 Query: 245 PYAKKVLSGEEKAERYFAFIAEQDNVQEVDDPNSWIKSNPLLDVDTLHSQISDYLTTKLA 304 YA+ V G+ + I E + +++ +++ + +S +L + Sbjct: 236 QYARDVRDGKIHDPHFLPVIFEHPPEMVESGAHLLMENLAMVNPNLGYSVDEAFLYREYR 295 Query: 305 QARADG--SLNAKLVK--NFNIWRQATEDSYLDFDAWKAAELTDKPDIRGQRA---WIGI 357 +AR G + + K N I D + D W+ D QRA +GI Sbjct: 296 KAREAGEEAFRGFMSKHANVEIGLALRSDRWTGADFWEQQGRRVSLDDILQRADVVTVGI 355 Query: 358 D------------VGRTSDLFAISWLIPQEGWWWLDGYAFVASKGGIDNKIKTDRI-DYL 404 D +GR D WL GW G+A+ + K + R D++ Sbjct: 356 DGGGLDDLLGMYVIGR--DRETREWL----GW----GHAWAHETAVVRRKSEASRFQDFV 405 Query: 405 AAEQHGEGEISSLESGIIDNDRVYEWLEDFIERNDIDVQGIMYDPYQFGPMLTAI-EKNH 463 A G+++ + D V E++ E ++ GI DP G +L ++ E Sbjct: 406 AC-----GDMTIVRRVGDDTAEVAEYVRRIHEAELLEHIGI--DPSGVGQILDSLAEAGI 458 Query: 464 PEWPMVQVRQGTLTLSMPTKQFRDDVIGGRIKHSDNRIMQAAAMNAVLMSDNNGVRINKN 523 P+ +V + QG L K + G + H +M NA + N + I K Sbjct: 459 PDGIVVGISQG-WKLGGAIKTTERKLAEGVLVHGGQPLMAWCVGNARVEPKGNAILITKQ 517 Query: 524 KYA-NKIDMIDATLDAYAI 541 KID + A +A ++ Sbjct: 518 ASGRGKIDPLMALFNAVSL 536 >gi|10991|lcl|protein:vir:78228 Length: 903 # NCBI annotation: Putative terminase # Family: family:all:1551 # MgeID: mge:1849 # MgeName: Bethlehem # Cross-refs: genbank:acc:YP_001491662;genbank:gi:157786486;genbank:Ge neID:5625706 Length = 903 Score = 32.3 bits (72), Expect = 0.016, Method: Compositional matrix adjust. Identities = 37/186 (19%), Positives = 78/186 (41%), Gaps = 23/186 (12%) Query: 326 ATEDSYLDFDAWKAAELTDKPDIR-GQRAWIGIDVGRTSDLFAISWLIPQEGWWWLDGYA 384 ATE+S++ W + P +R G+R +G D ++D A++ ++G +L Sbjct: 685 ATEESWIAPSEWDRNHDINLPPLRKGERITLGFDGSLSNDHTALTACRVEDGALFLVKVW 744 Query: 385 FVASKGGIDNKIKTDRIDYLAAEQHGEGEISSLESGIIDNDR-VYEWLEDFIERNDIDVQ 443 G +K+ +D + ++ + + + + ++ V W +DF R + + Sbjct: 745 VPEKYEG--HKVPRQDVDAYVRSMFEKYDVVGMRADVKEFEQSVDAWGQDF--RRKLKIN 800 Query: 444 GIMYDPYQFGPMLTAIEKNHPEWPMVQVRQGTLTLSMPTKQFRDDVIGGRIKHSDNRIMQ 503 +P F +R ++ ++FRD V+ G +KH +N +++ Sbjct: 801 ASPGNPVAF-----------------DMRGQQKRFALDCERFRDAVLAGEVKHDNNPVLK 843 Query: 504 AAAMNA 509 A NA Sbjct: 844 AHITNA 849 >gi|19975|lcl|protein:vir:108214 Length: 544 # NCBI annotation: gp5 # Family: family:all:523 # MgeID: mge:2004 # MgeName: Giles # Cross-refs: genbank:acc:YP_001552334;genbank:gi:160700654;genbank:Ge neID:5758934 Length = 544 Score = 32.0 bits (71), Expect = 0.018, Method: Compositional matrix adjust. Identities = 67/295 (22%), Positives = 110/295 (37%), Gaps = 48/295 (16%) Query: 92 DVFISMARKNGKSLLISGVILYEFLFGKNPANKRQLYTAANDRKQAGIVFGMVKDRLRAL 151 DV + + R+NGK+ LI+ I+Y F ++ +YTA Q V DR+ + Sbjct: 99 DVCLIIPRQNGKTQLIALRIIYGLFF----LGEKIVYTA-----QRWQTVKDVYDRIVEI 149 Query: 152 MRKDPGIKRMVK-----------------ITRDELVNLDDGSTIRSFSRDTGLVDGYEPH 194 +++ P + R +K I +LD G ++ R +D Sbjct: 150 IKRRPSLLRRLKPMPGVPDGYSEAGQHGEIYTTNGGSLDMGPRTKAVGRGQTKID----- 204 Query: 195 VAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTAGFDMNVPMFQQNYPYAKKVLSGE 254 +A+ DE + K ++ L Q + T ISTA P A +G+ Sbjct: 205 LAIFDEAYDIKDV-LVGGLTGAQKAATNPQTIYISTAAVASEHPDCGV---LAGMRRNGQ 260 Query: 255 EKAERYFAFIAEQDNVQEVDDPNSWIKSNPLLDVDTLHSQISDYLTTKLAQARADGSLNA 314 K +A DDP +W + P + L + ARA+ L A Sbjct: 261 RKEPDLYAAEWCAPPGMARDDPEAWRLACPSFGITVRERD----LAREYRMARANARLLA 316 Query: 315 KLVKNFNIWRQATED-----SYLDFDAWKAAELTDKPDIRGQRAWIGIDVGRTSD 364 ++ W + D +D D W+A + +P + G I I + RT D Sbjct: 317 IYDADYLGWGEWPPDPENTEPIIDPDWWEALTVL-QPALVGD---ICIAIERTLD 367 >gi|21825|lcl|protein:vir:98727 Length: 592 # NCBI annotation: terminase # Family: family:all:11211 # MgeID: mge:1530 # MgeName: Ma-LMM01 # Cross-refs: genbank:acc:YP_851132;genbank:gi:117530289;genbank:GeneI D:4484391 Length = 592 Score = 32.0 bits (71), Expect = 0.019, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 11/90 (12%) Query: 39 YDPNLAGKAVKFMEILPEPKSGKPQPLAPFQKFIIGSIYGWVDKDDSNIRRFTDVFISMA 98 + P A + E LPE + LA Q++ + WV R + ++ + Sbjct: 48 FPPQRAILRALYNEPLPEDE------LAILQRWAEQDVTTWVPD-----RSYVNMVLECG 96 Query: 99 RKNGKSLLISGVILYEFLFGKNPANKRQLY 128 R+ GKS+L S +LYEF N N + Y Sbjct: 97 RRGGKSVLASICVLYEFYCLINLDNPAKHY 126 Score = 24.6 bits (52), Expect = 3.3, Method: Compositional matrix adjust. Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%) Query: 505 AAMNAVLMSDNNGVRINKNKYANKIDMIDATLDAYAIAFKED 546 A M +L N +I N+ A+ D+IDA ++A KED Sbjct: 507 AEMGGILQLANG--KITHNERASGKDIIDAVVNAVFNCVKED 546 >gi|11235|lcl|protein:vir:78494 Length: 562 # NCBI annotation: Putative terminase # Family: family:all:1551 # MgeID: mge:1853 # MgeName: U2 # Cross-refs: genbank:acc:YP_001491581;genbank:gi:157786404;genbank:Ge neID:5625646 Length = 562 Score = 31.6 bits (70), Expect = 0.027, Method: Compositional matrix adjust. Identities = 37/186 (19%), Positives = 78/186 (41%), Gaps = 23/186 (12%) Query: 326 ATEDSYLDFDAWKAAELTDKPDIR-GQRAWIGIDVGRTSDLFAISWLIPQEGWWWLDGYA 384 ATE+S++ W + P +R G+R +G D ++D A++ ++G +L Sbjct: 344 ATEESWIAPSEWDRNHDINLPPLRKGERITLGFDGSLSNDHTALTACRVEDGALFLVKVW 403 Query: 385 FVASKGGIDNKIKTDRIDYLAAEQHGEGEISSLESGIIDNDR-VYEWLEDFIERNDIDVQ 443 G +K+ +D + ++ + + + + ++ V W +DF R + + Sbjct: 404 VPEKYEG--HKVPRQDVDAYVRSMFEKYDVVGMRADVKEFEQSVDAWGQDF--RRKLRIN 459 Query: 444 GIMYDPYQFGPMLTAIEKNHPEWPMVQVRQGTLTLSMPTKQFRDDVIGGRIKHSDNRIMQ 503 +P F +R ++ ++FRD V+ G +KH +N +++ Sbjct: 460 ASPGNPVAF-----------------DMRGQQKRFALDCERFRDAVLAGEVKHDNNPVLK 502 Query: 504 AAAMNA 509 A NA Sbjct: 503 AHITNA 508 >gi|18494|lcl|protein:vir:1636 Length: 469 # NCBI annotation: putative terminase # Family: family:all:523 # MgeID: mge:33 # MgeName: r1t # Cross-refs: genbank:acc:NP_695057;genbank:gi:23455748;genbank:GeneID :955481 Length = 469 Score = 31.2 bits (69), Expect = 0.035, Method: Compositional matrix adjust. Identities = 47/223 (21%), Positives = 90/223 (40%), Gaps = 22/223 (9%) Query: 166 RDELVNLDDGSTIRSFSRDTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLT 225 R EL+ R+ + GL +G++ + V+DE A TT+ L + +T Sbjct: 134 RLELIESGGVIQFRTRTSSGGLGEGFD--ILVIDE-AQEYTTEQESALKYTVTDSDNPMT 190 Query: 226 FIISTAGFDMNVPMFQQNYPYAKKVLSGEEKAERYFAFIAEQDNVQEVDDPNSWIKSNPL 285 + T ++ NY ++G+ K + + E +V+++ D +W SNP Sbjct: 191 IMCGTPPTPVSSGTVFTNY--RDNTIAGKAKYSGWAEWSVE--DVKDIHDVEAWYNSNPS 246 Query: 286 LDVDTLHSQISDYLTTKLAQARADGSLNAKLVKNFNIWRQATEDSYLDFDAWKAAELTDK 345 + +I +L + + D + V+ W + + S + W A ++ Sbjct: 247 MGYHLNERKIE----AELGEDKLDHN-----VQRLGYWPKYNQKSVISEQEWNALKVNRL 297 Query: 346 PDIRGQRAWIGIDVGRTSDLFAISWLIPQEGWWWLDGYAFVAS 388 P I+G + ++GI G A+S + L G FV + Sbjct: 298 PVIKG-KLFVGIKYGNDGANVAMSIAVKT-----LSGKVFVET 334 >gi|4240|lcl|protein:vir:94734 Length: 469 # NCBI annotation: large subunit terminase # Family: family:all:523 # MgeID: mge:1529 # MgeName: phi LC3 # Cross-refs: genbank:acc:NP_996704;genbank:gi:45597419;genbank:GeneID :2767958 Length = 469 Score = 30.4 bits (67), Expect = 0.060, Method: Compositional matrix adjust. Identities = 47/223 (21%), Positives = 89/223 (39%), Gaps = 22/223 (9%) Query: 166 RDELVNLDDGSTIRSFSRDTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLT 225 R EL+ R+ + GL +G++ + +DE A TT+ L + +T Sbjct: 134 RLELIESGGVIQFRTRTSSGGLGEGFD--ILFIDE-AQEYTTEQESALKYTVTDSDNPMT 190 Query: 226 FIISTAGFDMNVPMFQQNYPYAKKVLSGEEKAERYFAFIAEQDNVQEVDDPNSWIKSNPL 285 + T ++ NY L+G+ K + + E +V+++ D +W SNP Sbjct: 191 IMCGTPPTPVSSGTVFTNY--RDNTLAGKAKYSGWAEWSVE--DVKDIHDVEAWYNSNPS 246 Query: 286 LDVDTLHSQISDYLTTKLAQARADGSLNAKLVKNFNIWRQATEDSYLDFDAWKAAELTDK 345 + +I +L + + D + V+ W + + S + W A ++ Sbjct: 247 MGYHLNERKIE----AELGEDKLDHN-----VQRLGYWPKYNQKSVISEQEWNALKVNRL 297 Query: 346 PDIRGQRAWIGIDVGRTSDLFAISWLIPQEGWWWLDGYAFVAS 388 P I+G + ++GI G A+S + L G FV + Sbjct: 298 PVIKG-KLFVGIKYGNDGANVAMSIAVKT-----LSGKVFVET 334 >gi|19181|lcl|protein:vir:9572 Length: 459 # NCBI annotation: gp38 # Family: family:all:523 # MgeID: mge:171 # MgeName: SM1 # Cross-refs: genbank:acc:NP_862877;genbank:gi:32469469;genbank:GeneID :1461314 Length = 459 Score = 30.0 bits (66), Expect = 0.079, Method: Compositional matrix adjust. Identities = 61/283 (21%), Positives = 121/283 (42%), Gaps = 38/283 (13%) Query: 96 SMARKNGKS-LLISGVI--LYEFLFGKNPANKRQLYTAANDR-----KQAGIVFGMVKDR 147 S+ R+NGKS LL G I L+E L + A++ A+ ++ ++ G V G + Sbjct: 68 SIPRRNGKSELLYIGEIWGLHEGLNILHTAHRISTSHASFEKVKRYLEKMGYVDGEDFNS 127 Query: 148 LRALMRKDPGIKRMVKITRDELVNLDDGSTIRSFSRDTGLVDGYEPHVAVVDEYANAKTT 207 +RA ++ R EL + R+ + + GL +G++ + ++DE A TT Sbjct: 128 IRAKGQE-----------RIELYSTGGVIQFRTRTSNGGLGEGFD--MLIIDE-AQEYTT 173 Query: 208 DMIETLASGQVLLPSYLTFIISTAGFDMNV-PMFQQNYPYAKKVLSGEEKAERYFAFIAE 266 + L + +T + T ++ +F + Y + L G+ K + + Sbjct: 174 EQESALKYTVTDSENPITIMCGTPPTPVSSGTVFTK---YRETCLFGKGKYSGWAEWSVS 230 Query: 267 QDNVQEVDDPNSWIKSNPLLDVDTLHSQISDYLTTKLAQARADGSLNAKLVKNFNIWRQA 326 + +E+DD +W SNP + +I +L + + D + ++ W Sbjct: 231 DE--KEIDDVEAWYNSNPSMGYHLNERKIE----AELGEDKLDHN-----IQRLGFWPTY 279 Query: 327 TEDSYLDFDAWKAAELTDKPDIRGQRAWIGIDVGRTSDLFAIS 369 + S + W ++ D P++ G+ + +GI G+ A+S Sbjct: 280 NQKSAISETEWNELKMDDIPELSGKLS-VGIKYGQDGTNVAMS 321 >gi|28182|lcl|protein:vir:108053 Length: 611 # NCBI annotation: gp17 terminase DNA packaging enzyme large subunit # Family: family:all:147 # MgeID: mge:2002 # MgeName: JS98 # Cross-refs: genbank:acc:YP_001595293;genbank:gi:161622599;genbank:Ge neID:5783772 Length = 611 Score = 25.4 bits (54), Expect = 1.8, Method: Compositional matrix adjust. Identities = 26/113 (23%), Positives = 52/113 (46%), Gaps = 17/113 (15%) Query: 95 ISMARKNGKSLLISGVILYEFLFGKNPA-----NKRQLYTAANDRKQAGIVFGMVKDRLR 149 +++R+ GK+ +++ + + F K+ A +K + DR + I ++ D L+ Sbjct: 158 CNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAI--ELLPDFLQ 215 Query: 150 ALMRKDPGIKRMVKITRDELVNLDDGSTIRSFSRDTGLVDGYEPHVAVVDEYA 202 PGI K + + LD+GS+I +++ V G + +DE A Sbjct: 216 ------PGIVEWNKGS----IELDNGSSIGAYASSPDAVRGNSFAMIYIDECA 258 >gi|22263|lcl|protein:vir:104536 Length: 550 # NCBI annotation: gp17 # Family: family:all:147 # MgeID: mge:1548 # MgeName: P-SSM4 # Cross-refs: genbank:acc:YP_214662;genbank:gi:61806303;genbank:GeneID :3294591 Length = 550 Score = 25.4 bits (54), Expect = 1.9, Method: Compositional matrix adjust. Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 9/107 (8%) Query: 97 MARKNGKSLLISGVILYEFLFGKNPANKRQLYTAANDRKQAGIVFGMVKDRLRALMR-KD 155 + R++GKS +++ +L+ LF N + AN A + G ++ L + Sbjct: 81 LPRQSGKSTIVTAYLLWYVLFNANV----NVAILANKAPTAREMLGRLQLSYENLPKWMQ 136 Query: 156 PGIKRMVKITRDELVNLDDGSTIRSFSRDTGLVDGYEPHVAVVDEYA 202 GI K + + L++GS I + S V G ++ +DE+A Sbjct: 137 QGILGWNKGS----LELENGSKILASSTSASAVRGMSFNIIFLDEFA 179 >gi|27701|lcl|protein:vir:6893 Length: 611 # NCBI annotation: gp17 terminase DNA packaging enzyme, large subunit # Family: family:all:147 # MgeID: mge:140 # MgeName: RB69 # Cross-refs: genbank:acc:NP_861869;genbank:gi:32453660;genbank:GeneID :1494295 Length = 611 Score = 25.4 bits (54), Expect = 2.0, Method: Compositional matrix adjust. Identities = 26/113 (23%), Positives = 52/113 (46%), Gaps = 17/113 (15%) Query: 95 ISMARKNGKSLLISGVILYEFLFGKNPA-----NKRQLYTAANDRKQAGIVFGMVKDRLR 149 +++R+ GK+ +++ + + F K+ A +K + DR + I ++ D L+ Sbjct: 158 CNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAI--ELLPDFLQ 215 Query: 150 ALMRKDPGIKRMVKITRDELVNLDDGSTIRSFSRDTGLVDGYEPHVAVVDEYA 202 PGI K + + LD+GS+I +++ V G + +DE A Sbjct: 216 ------PGIVEWNKGS----IQLDNGSSIGAYASSPDAVRGNSFAMIYIDECA 258 >gi|27407|lcl|protein:vir:7202 Length: 610 # NCBI annotation: gp17 terminase DNA packaging enzyme, large subunit # Family: family:all:147 # MgeID: mge:142 # MgeName: T4 # Cross-refs: genbank:acc:NP_049776;genbank:gi:9632591;genbank:GeneID: 1258647 Length = 610 Score = 25.0 bits (53), Expect = 2.2, Method: Compositional matrix adjust. Identities = 26/113 (23%), Positives = 52/113 (46%), Gaps = 17/113 (15%) Query: 95 ISMARKNGKSLLISGVILYEFLFGKNPA-----NKRQLYTAANDRKQAGIVFGMVKDRLR 149 +++R+ GK+ +++ + + F K+ A +K + DR + I ++ D L+ Sbjct: 158 CNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAI--ELLPDFLQ 215 Query: 150 ALMRKDPGIKRMVKITRDELVNLDDGSTIRSFSRDTGLVDGYEPHVAVVDEYA 202 PGI K + + LD+GS+I +++ V G + +DE A Sbjct: 216 ------PGIVEWNKGS----IELDNGSSIGAYASSPDAVRGNSFAMIYIDECA 258 >gi|22056|lcl|protein:vir:103455 Length: 610 # NCBI annotation: terminase subunit nuclease and ATPase # Family: family:all:147 # MgeID: mge:1542 # MgeName: RB32 # Cross-refs: genbank:acc:YP_803107;genbank:gi:116326387;genbank:GeneI D:4405484 Length = 610 Score = 25.0 bits (53), Expect = 2.5, Method: Compositional matrix adjust. Identities = 26/113 (23%), Positives = 52/113 (46%), Gaps = 17/113 (15%) Query: 95 ISMARKNGKSLLISGVILYEFLFGKNPA-----NKRQLYTAANDRKQAGIVFGMVKDRLR 149 +++R+ GK+ +++ + + F K+ A +K + DR + I ++ D L+ Sbjct: 158 CNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAI--ELLPDFLQ 215 Query: 150 ALMRKDPGIKRMVKITRDELVNLDDGSTIRSFSRDTGLVDGYEPHVAVVDEYA 202 PGI K + + LD+GS+I +++ V G + +DE A Sbjct: 216 ------PGIVEWNKGS----IELDNGSSIGAYASSPDAVRGNSFAMIYIDECA 258 >gi|20243|lcl|protein:vir:106989 Length: 548 # NCBI annotation: terminase large subunit gp17 # Family: family:all:147 # MgeID: mge:1459 # MgeName: S-PM2 # Cross-refs: genbank:acc:YP_195134;genbank:gi:58532911;uniprot:Q5GQN8 ;genbank:GeneID:3260486 Length = 548 Score = 25.0 bits (53), Expect = 2.6, Method: Compositional matrix adjust. Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 9/107 (8%) Query: 97 MARKNGKSLLISGVILYEFLFGKNPANKRQLYTAANDRKQAGIVFGMVKDRLRALMRKDP 156 + R+ GKS + +L+ +F N + AN A + RL P Sbjct: 80 LPRQTGKSTTVVSYLLHYLIFNDNV----NIGILANKASTARDLLA----RLATAYENLP 131 Query: 157 G-IKRMVKITRDELVNLDDGSTIRSFSRDTGLVDGYEPHVAVVDEYA 202 I++ V + + L++GS I + S V G ++ +DE+A Sbjct: 132 KWIQQGVVVWNKGNIELENGSKILAASTSASAVRGMSFNIIFLDEFA 178 >gi|10890|lcl|protein:vir:78144 Length: 530 # NCBI annotation: probable terminase # Family: family:all:523 # MgeID: mge:1847 # MgeName: Min1 # Cross-refs: genbank:acc:YP_001294797;genbank:gi:149882818;genbank:Ge neID:5309172 Length = 530 Score = 25.0 bits (53), Expect = 2.7, Method: Compositional matrix adjust. Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 3/49 (6%) Query: 65 LAPFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGVILY 113 L P+QK+++ + ++ D RF + + R+NGK+L+ + + Y Sbjct: 41 LFPWQKWLLIHM---LELDAFGRLRFRKALVIVGRQNGKTLIAAVLAAY 86 >gi|1931|lcl|protein:vir:99847 Length: 486 # NCBI annotation: large terminase subunit # Family: family:all:460 # MgeID: mge:1480 # MgeName: B3 # Cross-refs: genbank:acc:YP_164067;genbank:gi:56692599;genbank:GeneID :3192575 Length = 486 Score = 24.3 bits (51), Expect = 3.6, Method: Compositional matrix adjust. Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 4/46 (8%) Query: 330 SYLDFDAWKAAELTDKPDIR---GQRAWIGIDVGRTSDLFAISWLI 372 ++L++D +AE + + G R + G+D+GR DL + W++ Sbjct: 258 AFLEYDLIASAEYPQTANWQQPEGGRLFAGVDIGRKKDL-TVLWIL 302 >gi|24012|lcl|protein:vir:104946 Length: 547 # NCBI annotation: T4-like DNA packaging large subunit terminase # Family: family:all:147 # MgeID: mge:1630 # MgeName: P-SSM2 # Cross-refs: genbank:acc:YP_214360;genbank:gi:61806000;genbank:GeneID :3294466 Length = 547 Score = 23.9 bits (50), Expect = 5.3, Method: Compositional matrix adjust. Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 9/109 (8%) Query: 95 ISMARKNGKSLLISGVILYEFLFGKNPANKRQLYTAANDRKQAGIVFGMVKDRLRALMR- 153 M R+ GKS +L+ +F N + AN A + G ++ L R Sbjct: 76 CKMPRQTGKSTTCISYLLHYAVFNDNV----NVAVLANKASTARDLLGRLQLAYENLPRW 131 Query: 154 KDPGIKRMVKITRDELVNLDDGSTIRSFSRDTGLVDGYEPHVAVVDEYA 202 GI K + + L++GS I + S + V G +V +DE+A Sbjct: 132 MQQGIISWNKGS----LELENGSKISANSTSSSAVRGGSYNVIFLDEFA 176 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.319 0.137 0.410 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 278,041 Number of Sequences: 514 Number of extensions: 13925 Number of successful extensions: 437 Number of sequences better than 100.0: 88 Number of HSP's better than 100.0 without gapping: 72 Number of HSP's successfully gapped in prelim test: 16 Number of HSP's that attempted gapping in prelim test: 48 Number of HSP's gapped (non-prelim): 101 length of query: 563 length of database: 206,069 effective HSP length: 76 effective length of query: 487 effective length of database: 167,005 effective search space: 81331435 effective search space used: 81331435 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 40 (20.0 bits)