BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|Aclame:protein:vir:5149|NCBI_annot:unknown|genbank:acc:NP_5 42306;genbank:gi:18071222;genbank:GeneID:929343 (514 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|4674|lcl|protein:vir:105593 Length: 543 # NCBI annotation: te... 393 e-111 gi|1431|lcl|protein:vir:93626 Length: 530 # NCBI annotation: Bce... 393 e-111 gi|17621|lcl|protein:vir:816 Length: 568 # NCBI annotation: hypo... 202 8e-54 gi|25680|lcl|protein:vir:10116 Length: 568 # NCBI annotation: hy... 202 8e-54 gi|51|lcl|protein:vir:3295 Length: 568 # NCBI annotation: putati... 202 8e-54 gi|26240|lcl|protein:vir:2763 Length: 568 # NCBI annotation: hyp... 202 8e-54 gi|25849|lcl|protein:vir:9949 Length: 568 # NCBI annotation: hyp... 202 8e-54 gi|1476|lcl|protein:vir:104436 Length: 568 # NCBI annotation: pu... 202 8e-54 gi|20113|lcl|protein:vir:108299 Length: 556 # NCBI annotation: h... 67 3e-13 gi|24012|lcl|protein:vir:104946 Length: 547 # NCBI annotation: T... 62 1e-11 gi|23408|lcl|protein:vir:103169 Length: 549 # NCBI annotation: g... 58 2e-10 gi|20243|lcl|protein:vir:106989 Length: 548 # NCBI annotation: t... 58 2e-10 gi|22263|lcl|protein:vir:104536 Length: 550 # NCBI annotation: g... 56 1e-09 gi|360|lcl|protein:vir:344 Length: 482 # NCBI annotation: termin... 55 2e-09 gi|16897|lcl|protein:vir:5867 Length: 508 # NCBI annotation: sim... 44 5e-06 gi|27123|lcl|protein:vir:6593 Length: 607 # NCBI annotation: ter... 40 5e-05 gi|25348|lcl|protein:vir:80989 Length: 607 # NCBI annotation: gp... 40 5e-05 gi|24596|lcl|protein:vir:98262 Length: 609 # NCBI annotation: gp... 38 4e-04 gi|27701|lcl|protein:vir:6893 Length: 611 # NCBI annotation: gp1... 37 5e-04 gi|22056|lcl|protein:vir:103455 Length: 610 # NCBI annotation: t... 37 6e-04 gi|27407|lcl|protein:vir:7202 Length: 610 # NCBI annotation: gp1... 37 6e-04 gi|23191|lcl|protein:vir:101186 Length: 613 # NCBI annotation: t... 35 0.002 gi|21077|lcl|protein:vir:100538 Length: 612 # NCBI annotation: g... 35 0.002 gi|22942|lcl|protein:vir:101803 Length: 613 # NCBI annotation: g... 35 0.002 gi|28182|lcl|protein:vir:108053 Length: 611 # NCBI annotation: g... 35 0.002 gi|14353|lcl|protein:vir:3149 Length: 554 # NCBI annotation: unk... 30 0.079 gi|15353|lcl|protein:vir:9921 Length: 425 # NCBI annotation: put... 30 0.084 gi|5208|lcl|protein:vir:106641 Length: 446 # NCBI annotation: OR... 29 0.13 gi|7643|lcl|protein:vir:96370 Length: 447 # NCBI annotation: ORF... 28 0.21 gi|11588|lcl|protein:vir:78831 Length: 447 # NCBI annotation: te... 28 0.21 gi|9829|lcl|protein:vir:103950 Length: 425 # NCBI annotation: ph... 28 0.22 gi|2779|lcl|protein:vir:99776 Length: 425 # NCBI annotation: lar... 28 0.23 gi|7301|lcl|protein:vir:96238 Length: 447 # NCBI annotation: ORF... 28 0.30 gi|17691|lcl|protein:vir:9305 Length: 447 # NCBI annotation: lar... 28 0.30 gi|15492|lcl|protein:vir:732 Length: 402 # NCBI annotation: unkn... 25 1.5 gi|9695|lcl|protein:vir:102601 Length: 545 # NCBI annotation: gp... 25 1.6 gi|8440|lcl|protein:vir:105818 Length: 545 # NCBI annotation: gp... 25 1.6 gi|18273|lcl|protein:vir:7986 Length: 545 # NCBI annotation: gp2... 25 1.6 gi|291|lcl|protein:vir:3608 Length: 462 # NCBI annotation: TerL ... 25 1.8 gi|13633|lcl|protein:vir:3963 Length: 462 # NCBI annotation: put... 25 1.9 gi|11420|lcl|protein:vir:78630 Length: 563 # NCBI annotation: pu... 25 2.5 gi|3108|lcl|protein:vir:94427 Length: 563 # NCBI annotation: ORF... 25 2.5 gi|2221|lcl|protein:vir:93883 Length: 563 # NCBI annotation: ORF... 25 2.5 gi|18074|lcl|protein:vir:5954 Length: 422 # NCBI annotation: hyp... 24 3.4 gi|3326|lcl|protein:vir:94525 Length: 440 # NCBI annotation: put... 24 5.0 gi|17412|lcl|protein:vir:2682 Length: 563 # NCBI annotation: ter... 23 5.7 gi|14327|lcl|protein:vir:9358 Length: 453 # NCBI annotation: ter... 23 5.8 gi|8807|lcl|protein:vir:96981 Length: 563 # NCBI annotation: ORF... 23 7.1 >gi|4674|lcl|protein:vir:105593 Length: 543 # NCBI annotation: terminase large subunit # Family: family:all:147 # MgeID: mge:1540 # MgeName: F116 # Cross-refs: genbank:acc:YP_164303;genbank:gi:56692921;genbank:GeneID :3197204 Length = 543 Score = 393 bits (1010), Expect = e-111, Method: Compositional matrix adjust. Identities = 215/508 (42%), Positives = 308/508 (60%), Gaps = 33/508 (6%) Query: 10 ADELKAKFADPMWRIEN--LYYILDKNGDTV--------------LFKPNEPQRKLLRRM 53 A EL ADP WR+ + LY I+ K D + FKPN Q++ +RR+ Sbjct: 18 AAELARCLADPEWRLFSGCLYKIMIKGDDKIGPDGSIEEGDSFVLPFKPNRAQKRFIRRL 77 Query: 54 WHRNIVPKARQRGFSTLIQIIILDACLFNENQRAAIIAQDRVTASKIMRNKIEFAYDRLP 113 WHRN++ KARQ GF+TLI I+ LD LFN +QR IIAQDR A I R+K++FAYD LP Sbjct: 78 WHRNLILKARQLGFTTLIAIMWLDHALFNGDQRCGIIAQDRDAAKVIFRDKVKFAYDNLP 137 Query: 114 PWLRQKVPIVTDNVEEKIFA-NGSSIQVSTSARGDTLNWLHISEFGIICFESPTKAEKIV 172 +R++ P N +E +FA N SS++V+TS R T++ LH+SEFG IC + P KA+++V Sbjct: 138 EEIRERFPTAAANADELLFAHNNSSVRVATSMRSGTIHRLHVSEFGKICAKYPDKAQEVV 197 Query: 173 TGSL-AAAAQGMIFIESTAKGRDGAYYNMVMEALALAEAGKRLNRLQYRLHFASWWDADE 231 TGS+ A G++ IESTA+GR+G ++ MV A A + K+L YR+HF +WW + Sbjct: 198 TGSIPAVPTNGILVIESTAEGREGEFFKMVQIAEANHASRKKLTPRDYRMHFYAWWQEPK 257 Query: 232 YAMDPHGVIIEPKDHKYFDELEREIGRPISEA------KRAWYVSTRRSDFADEDEKMWQ 285 Y +D + + ++H+YFD +E + R + E +RAWYV+T+R+DF+ +EKMWQ Sbjct: 258 YRLDSRTIELTREEHEYFDLVEATVMRDMGERITIDPDQRAWYVATKRADFSGAEEKMWQ 317 Query: 286 EYPSTVREAFKVSVEGVILAKQMSIARSQNRITRVPYRPELPVNTFWDLGVDDDIAIWFH 345 EYPS EAF++S EG AK M+ R +N IT+V ++P+NTFWD+G D AIWFH Sbjct: 318 EYPSFPAEAFQISTEGNWYAKDMATLRKRNGITKVLIL-DMPINTFWDIGRSDGCAIWFH 376 Query: 346 QAVGLVDHFIDYFECSSEPYSFVMAQFQRTGYVFGHHFLPHDGDQRRPGAL---VIETPK 402 Q + D FIDY+E +E + + + GY+FG HFLPHD + +R +E + Sbjct: 377 QELHGEDRFIDYYEAHNEDLRHYVKEMRDRGYLFGTHFLPHDAEHKRLSDFNRSTLEMLQ 436 Query: 403 DMLQGLGLKNIHIVPRTPDLMAIGIPALKEDFGNYVFDEEKCAQGILHLDNYRKKWNDNM 462 D++ G + IVPR +L+ G+ ++ DE +CA+GI L+ YRKK+N Sbjct: 437 DLMPG---EQFAIVPRITELVT-GVQQTRKHMKTAYLDETRCAKGIQRLEGYRKKFNRAE 492 Query: 463 GVWSETPHK-NGHQHGADALRQKAQYRE 489 ++ P K NG GADA RQ AQ +E Sbjct: 493 NRFTNEPDKSNGCSEGADAFRQWAQAKE 520 >gi|1431|lcl|protein:vir:93626 Length: 530 # NCBI annotation: Bcep22gp49 # Family: family:all:147 # MgeID: mge:1470 # MgeName: Bcep22 # Cross-refs: genbank:acc:NP_944278;genbank:gi:38640355;genbank:GeneID :2658275 Length = 530 Score = 393 bits (1009), Expect = e-111, Method: Compositional matrix adjust. Identities = 237/496 (47%), Positives = 307/496 (61%), Gaps = 17/496 (3%) Query: 6 AGFSADELKAKFADPMWRIEN--LYYIL-------DKNGDTVLFKPNEPQRKLLRRMWHR 56 A + DEL +DPMWRI + LY I+ D G + F+PN QR+LLRR+WHR Sbjct: 12 APLTEDELARCLSDPMWRICSGRLYKIIIKGDDQDDDEGLVLPFRPNRAQRRLLRRLWHR 71 Query: 57 NIVPKARQRGFSTLIQIIILDACLFNENQRAAIIAQDRVTASKIMRNKIEFAYDRLPPWL 116 N++ KARQ GF+TLI II LD LFN N R IIAQDR TA + R+K++FAYD LP L Sbjct: 72 NLILKARQLGFTTLICIIWLDHALFNANSRCGIIAQDRETAEALFRDKVKFAYDNLPEAL 131 Query: 117 RQKVPIVTDNVEEKIFA-NGSSIQVSTSARGDTLNWLHISEFGIICFESPTKAEKIVTGS 175 R+ +P+ E +FA N SSI+V+TS RG T++ LHISEFG IC + P KA ++VTGS Sbjct: 132 REAMPLANCTKAELLFAHNNSSIRVATSVRGGTIHRLHISEFGKICAKYPDKAAEVVTGS 191 Query: 176 LAAAAQ-GMIFIESTAKGRDGAYYNMVMEALALAEAGKRLNRLQYRLHFASWWDADEYAM 234 + A + G++ IESTA+GR+G +YN+ M+A A+A+AGK L YR HF WW A EY M Sbjct: 192 IPAVPKSGILVIESTAEGREGEFYNITMQAEAIAQAGKPLTARDYRFHFFPWWQAPEYRM 251 Query: 235 DPHGVIIEPKDHKYFDELEREIGRPISEAKRAWYVSTRRSDFADEDEKMWQEYPSTVREA 294 D VII KD +YF+ +E + G I +RAWYV+TR +DF+ +E+MWQEYPST E Sbjct: 252 DSAHVIITEKDRQYFETIEAKHGITIDAEQRAWYVATRDADFSGNEERMWQEYPSTPDEP 311 Query: 295 FKVSVEGVILAKQMSIARSQNRIT-RVPYRPELPVNTFWDLGVDDDIAIWFHQAVGLVDH 353 FKVS EG A+Q++ AR Q RI +P +P TFWD+G D AIW Q V Sbjct: 312 FKVSTEGTYYAQQLAAARKQGRIKPSLPVLFNVPCFTFWDIGNSDGTAIWVLQRVEHEWR 371 Query: 354 FIDYFECSSEPYSFVMAQFQRTGYVFGHHFLPHDGDQRRPGALVIETPKDMLQGL--GLK 411 I + E EPYS+ + Q G V+ FLPHD D R G ++PK ML+ L G++ Sbjct: 372 AIRFKEGWGEPYSYFVKWLQGLGLVWDTMFLPHDADHVRQGQTTNKSPKQMLEELMPGVR 431 Query: 412 NIHIVPRTPDLMAIGIPALKEDFGNYVFDEEKCAQGILHLDNYRKKWNDNMGVWSETPHK 471 IVPR D+ GI ++ F FDE +C GI+H++NYRKKW+ W P K Sbjct: 432 -FEIVPRIDDV-NWGIQQTRDAFPLLWFDETECKDGIIHIENYRKKWSVQQQRWMTEPDK 489 Query: 472 N-GHQHGADALRQKAQ 486 GH ADALRQ AQ Sbjct: 490 TGGHSEAADALRQFAQ 505 >gi|17621|lcl|protein:vir:816 Length: 568 # NCBI annotation: hypothetical protein # Family: family:all:147 # MgeID: mge:16 # MgeName: VT2-Sa # Cross-refs: genbank:acc:NP_050549;genbank:gi:9633446;genbank:GeneID: 1262208 Length = 568 Score = 202 bits (514), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 115/308 (37%), Positives = 175/308 (56%), Gaps = 11/308 (3%) Query: 13 LKAKFADPMWRIENLYYILDKNGDTVLFKPNEPQRKLLRRMWHRNIVPKARQRGFSTLIQ 72 + K ++P WR+ +LY I ++ G+ V F+ QR+L R M ++NI+ KARQ GFST I Sbjct: 25 IMTKLSNPWWRLNHLYKIQNEKGELVTFRMRPAQRQLFRSMHNKNIILKARQLGFSTAID 84 Query: 73 IIILDACLFNENQRAAIIAQDRVTASKIMRNKIEFAYDRLPPWLRQKVPIVTDNVEEK-- 130 I +LD LF + + I+AQD+ AS+I R KI +D LP WLR IV Sbjct: 85 IYLLDQALFIPHLKCGIVAQDKQAASEIFRTKIAVPFDHLPDWLRASFTIVERRSGASGG 144 Query: 131 --IFANGSSIQVSTSARGDTLNWLHISEFGIICFESPTKAEKIVTGSLAAAA-QGMIFIE 187 +F +GSSIQV+TS R T+ LHISE G IC + P KA+++ TG+L A + + +IF E Sbjct: 145 YILFGHGSSIQVATSFRSGTVQRLHISEHGKICAKYPAKAKELRTGTLNAVSDECIIFDE 204 Query: 188 STAKGRDGAYYNMVMEALALAEAGKRLNRLQYRLHFASWWDADEYA--MDPHGVIIEPKD 245 STA+G G +Y M A + +G L Y+ HF +WW +Y+ + G+ + + Sbjct: 205 STAEGVGGDFYEMSNRAQEITASGLLLTAQDYKFHFYAWWQDPKYSARVPESGLKLSREK 264 Query: 246 HKYFDELEREIGRPISEAKRAWYVSTRRSDFADEDEKMWQEYPSTVREAFKVSVEGVILA 305 YF +E+ + +++ ++ WY++ ++ E+M QE+PST +EAF S V A Sbjct: 265 MTYFSAVEKAMNITLTDEQKQWYINKE----TEQREEMKQEFPSTPQEAFLTSGRRVFSA 320 Query: 306 KQMSIARS 313 + A S Sbjct: 321 ESTLQAES 328 >gi|25680|lcl|protein:vir:10116 Length: 568 # NCBI annotation: hypothetical protein # Family: family:all:147 # MgeID: mge:180 # MgeName: Stx2 converting bacteriophage II # Cross-refs: genbank:acc:NP_859246;genbank:gi:32171173;genbank:GeneID :2653342 Length = 568 Score = 202 bits (514), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 115/308 (37%), Positives = 175/308 (56%), Gaps = 11/308 (3%) Query: 13 LKAKFADPMWRIENLYYILDKNGDTVLFKPNEPQRKLLRRMWHRNIVPKARQRGFSTLIQ 72 + K ++P WR+ +LY I ++ G+ V F+ QR+L R M ++NI+ KARQ GFST I Sbjct: 25 IMTKLSNPWWRLNHLYKIQNEKGELVTFRMRPAQRQLFRSMHNKNIILKARQLGFSTAID 84 Query: 73 IIILDACLFNENQRAAIIAQDRVTASKIMRNKIEFAYDRLPPWLRQKVPIVTDNVEEK-- 130 I +LD LF + + I+AQD+ AS+I R KI +D LP WLR IV Sbjct: 85 IYLLDQALFIPHLKCGIVAQDKQAASEIFRTKIAVPFDHLPDWLRASFTIVERRSGASGG 144 Query: 131 --IFANGSSIQVSTSARGDTLNWLHISEFGIICFESPTKAEKIVTGSLAAAA-QGMIFIE 187 +F +GSSIQV+TS R T+ LHISE G IC + P KA+++ TG+L A + + +IF E Sbjct: 145 YILFGHGSSIQVATSFRSGTVQRLHISEHGKICAKYPAKAKELRTGTLNAVSDECIIFDE 204 Query: 188 STAKGRDGAYYNMVMEALALAEAGKRLNRLQYRLHFASWWDADEYA--MDPHGVIIEPKD 245 STA+G G +Y M A + +G L Y+ HF +WW +Y+ + G+ + + Sbjct: 205 STAEGVGGDFYEMSNRAQEITASGLLLTAQDYKFHFYAWWQDPKYSARVPESGLKLSREK 264 Query: 246 HKYFDELEREIGRPISEAKRAWYVSTRRSDFADEDEKMWQEYPSTVREAFKVSVEGVILA 305 YF +E+ + +++ ++ WY++ ++ E+M QE+PST +EAF S V A Sbjct: 265 MTYFSAVEKAMNITLTDEQKQWYINKE----TEQREEMKQEFPSTPQEAFLTSGRRVFSA 320 Query: 306 KQMSIARS 313 + A S Sbjct: 321 ESTLQAES 328 >gi|51|lcl|protein:vir:3295 Length: 568 # NCBI annotation: putative large subunit terminase # Family: family:all:147 # MgeID: mge:66 # MgeName: 933W # Cross-refs: genbank:acc:NP_049511;genbank:gi:9632517;genbank:GeneID: 1262002 Length = 568 Score = 202 bits (514), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 115/308 (37%), Positives = 175/308 (56%), Gaps = 11/308 (3%) Query: 13 LKAKFADPMWRIENLYYILDKNGDTVLFKPNEPQRKLLRRMWHRNIVPKARQRGFSTLIQ 72 + K ++P WR+ +LY I ++ G+ V F+ QR+L R M ++NI+ KARQ GFST I Sbjct: 25 IMTKLSNPWWRLNHLYKIQNEKGELVTFRMRPAQRQLFRSMHNKNIILKARQLGFSTAID 84 Query: 73 IIILDACLFNENQRAAIIAQDRVTASKIMRNKIEFAYDRLPPWLRQKVPIVTDNVEEK-- 130 I +LD LF + + I+AQD+ AS+I R KI +D LP WLR IV Sbjct: 85 IYLLDQALFIPHLKCGIVAQDKQAASEIFRTKIAVPFDHLPDWLRASFTIVERRSGASGG 144 Query: 131 --IFANGSSIQVSTSARGDTLNWLHISEFGIICFESPTKAEKIVTGSLAAAA-QGMIFIE 187 +F +GSSIQV+TS R T+ LHISE G IC + P KA+++ TG+L A + + +IF E Sbjct: 145 YILFGHGSSIQVATSFRSGTVQRLHISEHGKICAKYPAKAKELRTGTLNAVSDECIIFDE 204 Query: 188 STAKGRDGAYYNMVMEALALAEAGKRLNRLQYRLHFASWWDADEYA--MDPHGVIIEPKD 245 STA+G G +Y M A + +G L Y+ HF +WW +Y+ + G+ + + Sbjct: 205 STAEGVGGDFYEMSNRAQEITASGLLLTAQDYKFHFYAWWQDPKYSARVPESGLKLSREK 264 Query: 246 HKYFDELEREIGRPISEAKRAWYVSTRRSDFADEDEKMWQEYPSTVREAFKVSVEGVILA 305 YF +E+ + +++ ++ WY++ ++ E+M QE+PST +EAF S V A Sbjct: 265 MTYFSAVEKAMNITLTDEQKQWYINKE----TEQREEMKQEFPSTPQEAFLTSGRRVFSA 320 Query: 306 KQMSIARS 313 + A S Sbjct: 321 ESTLQAES 328 >gi|26240|lcl|protein:vir:2763 Length: 568 # NCBI annotation: hypothetical protein # Family: family:all:147 # MgeID: mge:59 # MgeName: Stx2 converting bacteriophage I # Cross-refs: genbank:acc:NP_612880;genbank:gi:20065962;genbank:GeneID :935714 Length = 568 Score = 202 bits (514), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 115/308 (37%), Positives = 175/308 (56%), Gaps = 11/308 (3%) Query: 13 LKAKFADPMWRIENLYYILDKNGDTVLFKPNEPQRKLLRRMWHRNIVPKARQRGFSTLIQ 72 + K ++P WR+ +LY I ++ G+ V F+ QR+L R M ++NI+ KARQ GFST I Sbjct: 25 IMTKLSNPWWRLNHLYKIQNEKGELVTFRMRPAQRQLFRSMHNKNIILKARQLGFSTAID 84 Query: 73 IIILDACLFNENQRAAIIAQDRVTASKIMRNKIEFAYDRLPPWLRQKVPIVTDNVEEK-- 130 I +LD LF + + I+AQD+ AS+I R KI +D LP WLR IV Sbjct: 85 IYLLDQALFIPHLKCGIVAQDKQAASEIFRTKIAVPFDHLPDWLRASFTIVERRSGASGG 144 Query: 131 --IFANGSSIQVSTSARGDTLNWLHISEFGIICFESPTKAEKIVTGSLAAAA-QGMIFIE 187 +F +GSSIQV+TS R T+ LHISE G IC + P KA+++ TG+L A + + +IF E Sbjct: 145 YILFGHGSSIQVATSFRSGTVQRLHISEHGKICAKYPAKAKELRTGTLNAVSDECIIFDE 204 Query: 188 STAKGRDGAYYNMVMEALALAEAGKRLNRLQYRLHFASWWDADEYA--MDPHGVIIEPKD 245 STA+G G +Y M A + +G L Y+ HF +WW +Y+ + G+ + + Sbjct: 205 STAEGVGGDFYEMSNRAQEITASGLLLTAQDYKFHFYAWWQDPKYSARVPESGLKLSREK 264 Query: 246 HKYFDELEREIGRPISEAKRAWYVSTRRSDFADEDEKMWQEYPSTVREAFKVSVEGVILA 305 YF +E+ + +++ ++ WY++ ++ E+M QE+PST +EAF S V A Sbjct: 265 MTYFSAVEKAMNITLTDEQKQWYINKE----TEQREEMKQEFPSTPQEAFLTSGRRVFSA 320 Query: 306 KQMSIARS 313 + A S Sbjct: 321 ESTLQAES 328 >gi|25849|lcl|protein:vir:9949 Length: 568 # NCBI annotation: hypothetical protein # Family: family:all:147 # MgeID: mge:179 # MgeName: Stx1 converting bacteriophage # Cross-refs: genbank:acc:NP_859079;genbank:gi:32171001;genbank:GeneID :2653280 Length = 568 Score = 202 bits (514), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 115/308 (37%), Positives = 175/308 (56%), Gaps = 11/308 (3%) Query: 13 LKAKFADPMWRIENLYYILDKNGDTVLFKPNEPQRKLLRRMWHRNIVPKARQRGFSTLIQ 72 + K ++P WR+ +LY I ++ G+ V F+ QR+L R M ++NI+ KARQ GFST I Sbjct: 25 IMTKLSNPWWRLNHLYKIQNEKGELVTFRMRPAQRQLFRSMHNKNIILKARQLGFSTAID 84 Query: 73 IIILDACLFNENQRAAIIAQDRVTASKIMRNKIEFAYDRLPPWLRQKVPIVTDNVEEK-- 130 I +LD LF + + I+AQD+ AS+I R KI +D LP WLR IV Sbjct: 85 IYLLDQALFIPHLKCGIVAQDKQAASEIFRTKIAVPFDHLPDWLRASFTIVERRSGASGG 144 Query: 131 --IFANGSSIQVSTSARGDTLNWLHISEFGIICFESPTKAEKIVTGSLAAAA-QGMIFIE 187 +F +GSSIQV+TS R T+ LHISE G IC + P KA+++ TG+L A + + +IF E Sbjct: 145 YILFGHGSSIQVATSFRSGTVQRLHISEHGKICAKYPAKAKELRTGTLNAVSDECIIFDE 204 Query: 188 STAKGRDGAYYNMVMEALALAEAGKRLNRLQYRLHFASWWDADEYA--MDPHGVIIEPKD 245 STA+G G +Y M A + +G L Y+ HF +WW +Y+ + G+ + + Sbjct: 205 STAEGVGGDFYEMSNRAQEITASGLLLTAQDYKFHFYAWWQDPKYSARVPESGLKLSREK 264 Query: 246 HKYFDELEREIGRPISEAKRAWYVSTRRSDFADEDEKMWQEYPSTVREAFKVSVEGVILA 305 YF +E+ + +++ ++ WY++ ++ E+M QE+PST +EAF S V A Sbjct: 265 MTYFSAVEKAMNITLTDEQKQWYINKE----TEQREEMKQEFPSTPQEAFLTSGRRVFSA 320 Query: 306 KQMSIARS 313 + A S Sbjct: 321 ESTLQAES 328 >gi|1476|lcl|protein:vir:104436 Length: 568 # NCBI annotation: putative terminase large subunit # Family: family:all:147 # MgeID: mge:1471 # MgeName: 86 # Cross-refs: genbank:acc:YP_794060;genbank:gi:116222005;genbank:GeneI D:4397501 Length = 568 Score = 202 bits (514), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 115/308 (37%), Positives = 175/308 (56%), Gaps = 11/308 (3%) Query: 13 LKAKFADPMWRIENLYYILDKNGDTVLFKPNEPQRKLLRRMWHRNIVPKARQRGFSTLIQ 72 + K ++P WR+ +LY I ++ G+ V F+ QR+L R M ++NI+ KARQ GFST I Sbjct: 25 IMTKLSNPWWRLNHLYKIQNEKGELVTFRMRPAQRQLFRSMHNKNIILKARQLGFSTAID 84 Query: 73 IIILDACLFNENQRAAIIAQDRVTASKIMRNKIEFAYDRLPPWLRQKVPIVTDNVEEK-- 130 I +LD LF + + I+AQD+ AS+I R KI +D LP WLR IV Sbjct: 85 IYLLDQALFIPHLKCGIVAQDKQAASEIFRTKIAVPFDHLPDWLRASFTIVERRSGASGG 144 Query: 131 --IFANGSSIQVSTSARGDTLNWLHISEFGIICFESPTKAEKIVTGSLAAAA-QGMIFIE 187 +F +GSSIQV+TS R T+ LHISE G IC + P KA+++ TG+L A + + +IF E Sbjct: 145 YILFGHGSSIQVATSFRSGTVQRLHISEHGKICAKYPAKAKELRTGTLNAVSDECIIFDE 204 Query: 188 STAKGRDGAYYNMVMEALALAEAGKRLNRLQYRLHFASWWDADEYA--MDPHGVIIEPKD 245 STA+G G +Y M A + +G L Y+ HF +WW +Y+ + G+ + + Sbjct: 205 STAEGVGGDFYEMSNRAQEITASGLLLTAQDYKFHFYAWWQDPKYSARVPESGLKLSREK 264 Query: 246 HKYFDELEREIGRPISEAKRAWYVSTRRSDFADEDEKMWQEYPSTVREAFKVSVEGVILA 305 YF +E+ + +++ ++ WY++ ++ E+M QE+PST +EAF S V A Sbjct: 265 MTYFSAVEKAMNITLTDEQKQWYINKE----TEQREEMKQEFPSTPQEAFLTSGRRVFSA 320 Query: 306 KQMSIARS 313 + A S Sbjct: 321 ESTLQAES 328 >gi|20113|lcl|protein:vir:108299 Length: 556 # NCBI annotation: hypothetical protein # Family: family:all:144 # MgeID: mge:2007 # MgeName: BA3 # Cross-refs: genbank:acc:YP_001552286;genbank:gi:160700611;genbank:Ge neID:5758815 Length = 556 Score = 67.4 bits (163), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 62/228 (27%), Positives = 95/228 (41%), Gaps = 30/228 (13%) Query: 300 EGVILAKQMSIARSQNRITRVPYRPELPVNTFWDLGVDDDIAIWFHQAVGLVDHFIDYFE 359 EGV+ K++ + R T +P P LPV T+WDLG +DD+ +W Q G I + Sbjct: 332 EGVVYKKEIERLLEEGRFTHIPVEPALPVYTYWDLGRNDDMVLWLMQPHGKELRLIACYS 391 Query: 360 CSSEP---YSFVMAQFQ-RTGYVFGHHFLPHDGDQRRPGALVIETPKDMLQGLGLKNIHI 415 E Y + FQ + FG H PHD + E+ D+ + +G+K + Sbjct: 392 NRDEGMEHYINWLKDFQAKYNIRFGEHLAPHDIAVH--DLMTNESRIDVAKKMGIK-FKL 448 Query: 416 VPRTPDLMAIGIPALKEDFGNYVFDEEKC-------------AQGILHLDNYRKKWNDNM 462 + R I ALK+ F D+ +C G L R++W+ N Sbjct: 449 IERCKSKRE-SINALKKLFPRIWIDKVRCDTDIAGNTGDLARKTGWKGLKALRREWDHNN 507 Query: 463 GVWSETPHKNGHQHGADALRQKA-QYREEVRRLVSVGGMLTRPVRRNR 509 V+ + + DAL+Q Y+E V+R +P RR R Sbjct: 508 EVFKDETGPKWATNFCDALQQMGLHYKEPVQR--------NKPKRRQR 547 Score = 23.5 bits (49), Expect = 6.4, Method: Compositional matrix adjust. Identities = 11/32 (34%), Positives = 17/32 (53%) Query: 474 HQHGADALRQKAQYREEVRRLVSVGGMLTRPV 505 Q DAL++ Y++E+ RL+ G PV Sbjct: 323 QQSPDDALQEGVVYKKEIERLLEEGRFTHIPV 354 >gi|24012|lcl|protein:vir:104946 Length: 547 # NCBI annotation: T4-like DNA packaging large subunit terminase # Family: family:all:147 # MgeID: mge:1630 # MgeName: P-SSM2 # Cross-refs: genbank:acc:YP_214360;genbank:gi:61806000;genbank:GeneID :3294466 Length = 547 Score = 62.4 bits (150), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 88/200 (44%), Gaps = 14/200 (7%) Query: 8 FSADE----LKAKFADPMWRIENLYYILDKNGDTVLFKPNEPQRKLLRRMWHR--NIVPK 61 FS D LK K DP++ N I+ + V F + Q KL+ R NI Sbjct: 20 FSKDNIREFLKCK-EDPVYFTRNYIKIVSLDEGLVPFNMYDFQEKLITRFHENRFNICKM 78 Query: 62 ARQRGFSTLIQIIILDACLFNENQRAAIIAQDRVTASKIMRNKIEFAYDRLPPWLRQKVP 121 RQ G ST +L +FN+N A++A TA ++ +++ AY+ LP W++Q Sbjct: 79 PRQTGKSTTCISYLLHYAVFNDNVNVAVLANKASTARDLL-GRLQLAYENLPRWMQQG-- 135 Query: 122 IVTDNVEEKIFANGSSIQV----STSARGDTLNWLHISEFGIICFESPTKAEKIVTGSLA 177 I++ N NGS I S++ RG + N + + EF I V ++ Sbjct: 136 IISWNKGSLELENGSKISANSTSSSAVRGGSYNVIFLDEFAFIPNHIADDFFASVYPTIT 195 Query: 178 AAAQGMIFIESTAKGRDGAY 197 + + I ST +G + Y Sbjct: 196 SGQSTKVIIVSTPRGMNHFY 215 >gi|23408|lcl|protein:vir:103169 Length: 549 # NCBI annotation: gp123 # Family: family:all:147 # MgeID: mge:1583 # MgeName: Syn9 # Cross-refs: genbank:acc:YP_717790;genbank:gi:113200627;genbank:GeneI D:4239178 Length = 549 Score = 58.2 bits (139), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/185 (27%), Positives = 88/185 (47%), Gaps = 9/185 (4%) Query: 19 DPMWRIENLYYILDKNGDTVLFKPNEPQRKLLRRMWHR--NIVPKARQRGFSTLIQIIIL 76 +P++ I+N I+ + + F Q +++++ NI RQ G ST++ +L Sbjct: 36 NPVYFIKNYIKIVSLDKGLIPFDMYYFQEEMVQKFHDNRFNIAKLPRQSGKSTIVTSYLL 95 Query: 77 DACLFNENQRAAIIAQDRVTASKIMRNKIEFAYDRLPPWLRQKVPIVTDNVEEKIFANGS 136 LFN N AI+A TA ++++ +++ +Y+ LP WL+Q I+ N NGS Sbjct: 96 WYVLFNANVNVAILANKAATAREMLQ-RLQLSYENLPKWLQQG--ILQWNRGSLELENGS 152 Query: 137 SI-QVSTSA---RGDTLNWLHISEFGIICFESPTKAEKIVTGSLAAAAQGMIFIESTAKG 192 I STSA RG + N + + EF + + V ++++ + I ST G Sbjct: 153 KILAASTSASAVRGMSFNVIFLDEFAFVPNHVADQFFSSVYPTISSGKSTKVIIISTPHG 212 Query: 193 RDGAY 197 + Y Sbjct: 213 MNMFY 217 >gi|20243|lcl|protein:vir:106989 Length: 548 # NCBI annotation: terminase large subunit gp17 # Family: family:all:147 # MgeID: mge:1459 # MgeName: S-PM2 # Cross-refs: genbank:acc:YP_195134;genbank:gi:58532911;uniprot:Q5GQN8 ;genbank:GeneID:3260486 Length = 548 Score = 58.2 bits (139), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 55/194 (28%), Positives = 93/194 (47%), Gaps = 14/194 (7%) Query: 19 DPMWRIENLYYILDKNGDTVLFKPNEPQRKLLRRMWHRN---IVPKARQRGFSTLIQIII 75 DP++ +N I+ + V FK + Q +L+ + +H+N I RQ G ST + + Sbjct: 36 DPVYFTKNYVKIVSLDEGLVPFKMWDFQEELIMK-FHKNRFNIAKLPRQTGKSTTVVSYL 94 Query: 76 LDACLFNENQRAAIIAQDRVTASKIMRNKIEFAYDRLPPWLRQKVPIVTD-NVEEKIFAN 134 L +FN+N I+A TA ++ ++ AY+ LP W++Q V + N+E N Sbjct: 95 LHYLIFNDNVNIGILANKASTARDLLA-RLATAYENLPKWIQQGVVVWNKGNIE---LEN 150 Query: 135 GSSI-QVSTSA---RGDTLNWLHISEFGIICFESPTKAEKIVTGSLAAAAQGMIFIESTA 190 GS I STSA RG + N + + EF + V ++ + + I ST Sbjct: 151 GSKILAASTSASAVRGMSFNIIFLDEFAFVPNHIADSFFASVYPTITSGKSTKVIIISTP 210 Query: 191 KGRDGAYYNMVMEA 204 +G + +Y M ++A Sbjct: 211 QGMN-HFYKMWVDA 223 >gi|22263|lcl|protein:vir:104536 Length: 550 # NCBI annotation: gp17 # Family: family:all:147 # MgeID: mge:1548 # MgeName: P-SSM4 # Cross-refs: genbank:acc:YP_214662;genbank:gi:61806303;genbank:GeneID :3294591 Length = 550 Score = 56.2 bits (134), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 84/185 (45%), Gaps = 9/185 (4%) Query: 19 DPMWRIENLYYILDKNGDTVLFKPNEPQRKLLRRM-WHR-NIVPKARQRGFSTLIQIIIL 76 DP++ I I+ + + F Q ++ + HR NI RQ G ST++ +L Sbjct: 37 DPVYFIRKYIRIVSLDEGVIPFDMYNFQEDMVTKFHQHRFNIAKLPRQSGKSTIVTAYLL 96 Query: 77 DACLFNENQRAAIIAQDRVTASKIMRNKIEFAYDRLPPWLRQKVPIVTDNVEEKIFANGS 136 LFN N AI+A TA + M +++ +Y+ LP W++Q I+ N NGS Sbjct: 97 WYVLFNANVNVAILANKAPTARE-MLGRLQLSYENLPKWMQQG--ILGWNKGSLELENGS 153 Query: 137 SIQVSTSA----RGDTLNWLHISEFGIICFESPTKAEKIVTGSLAAAAQGMIFIESTAKG 192 I S+++ RG + N + + EF + + V ++++ + I ST G Sbjct: 154 KILASSTSASAVRGMSFNIIFLDEFAFVPNHIAEQFFASVYPTISSGKSTKVIIISTPHG 213 Query: 193 RDGAY 197 + Y Sbjct: 214 MNQFY 218 >gi|360|lcl|protein:vir:344 Length: 482 # NCBI annotation: terminase # Family: family:all:147 # MgeID: mge:9 # MgeName: Mx8 # Cross-refs: genbank:acc:NP_203458;genbank:gi:15320614;genbank:GeneID :921717 Length = 482 Score = 55.1 bits (131), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/182 (25%), Positives = 76/182 (41%), Gaps = 19/182 (10%) Query: 328 VNTFWDLGVDDDIAIWFHQ----AVGLVDHFIDYFECSSEPYSFVMAQFQRTGYVFGHHF 383 + T WDLG D +IWF + V +VDH+ + E S + + GY + H Sbjct: 271 IFTIWDLGRADSTSIWFMRLRTGGVDIVDHYRNNGEPLSHYFGLLDGWASAKGYRYLKHV 330 Query: 384 LPHDGDQRRPGALVIETP--KDMLQGLGLKNIHIVPRTPDLMAIGIPALKEDFGNYVFDE 441 LPHD R LV + + L G + + P+ + GI A + + Sbjct: 331 LPHDA---RAKTLVTRSSVLEQFLAKYGPAAVVVGPQLS--LEDGIAAARALLERDIRFH 385 Query: 442 EKC--------AQGILHLDNYRKKWNDNMGVWSETPHKNGHQHGADALRQKAQYREEVRR 493 +C G+ L +YR ++N+ + +S P + H ADA R A + + + Sbjct: 386 ARCDVPQVAGLESGLEALRSYRYQYNEKLQTYSREPVHDWASHDADAFRYVATFAQVAQS 445 Query: 494 LV 495 LV Sbjct: 446 LV 447 >gi|16897|lcl|protein:vir:5867 Length: 508 # NCBI annotation: similar to terminase DNA packaging enzyme, large subunit # Family: family:all:147 # MgeID: mge:123 # MgeName: RM 378 # Cross-refs: genbank:acc:NP_835653;genbank:gi:30044056 Length = 508 Score = 43.9 bits (102), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 63/250 (25%), Positives = 99/250 (39%), Gaps = 35/250 (14%) Query: 12 ELKAKFADPMWRIENLYYILDKNGDTVLFKPNEPQRKLLRRMWHRN---IVPKARQRGFS 68 EL+ DP++ I I + F Q KL+ +H + I K RQ G + Sbjct: 10 ELEKCKNDPIYFIRKYVKIQHPIKRVIPFDLYPIQEKLIN-FYHTHRYVITEKPRQMGVT 68 Query: 69 TLIQIIILDACLFNENQRAAIIAQDRVTASKIMRNKIEFAYDRLPPWLRQKVPIVTDNVE 128 L +FN N + I A TA ++ +I+FAY++LP +L+ K Sbjct: 69 WCAVAYALHQMIFNSNYKVLIAANKEATAKNVLE-RIKFAYEQLPRFLQIKKRTWNKTYI 127 Query: 129 EKIFANGSSIQV----STSARGDTLNWLHISEFGIICFESPTKAEKIVTGSLAAAAQGMI 184 E F+N SS + S S R +++ L + E I E + A G Sbjct: 128 E--FSNYSSARAVSSKSDSGRSESITLLIVEEAAFIS----NMEELWASVQQTLATGGKC 181 Query: 185 FIESTAKGRDGAYYNMVMEALALAEAGKRLNRLQYRLHFASWWDADEYAMDPHGVIIEPK 244 + ST G G +Y + A A+ GK +++ W D E + Sbjct: 182 IVNSTYNGV-GNWYERTIRA---AKEGKS----EFKYFGIKWSDHPE------------R 221 Query: 245 DHKYFDELER 254 D K+F+E +R Sbjct: 222 DEKWFEEQKR 231 >gi|27123|lcl|protein:vir:6593 Length: 607 # NCBI annotation: terminase DNA packaging enzyme large subunit # Family: family:all:147 # MgeID: mge:139 # MgeName: RB49 # Cross-refs: genbank:acc:NP_891724;genbank:gi:33620526;genbank:GeneID :1725332 Length = 607 Score = 40.4 bits (93), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 68/138 (49%), Gaps = 16/138 (11%) Query: 37 TVLFKPNEPQRKLLRRMWHRNIVPK---ARQRGFSTLIQIIILDACLFNENQRAAIIAQD 93 T+ + + Q+ +L+ M H N + +RQ G +T + I + FN+++ I+A Sbjct: 132 TIKVQLRDYQKDMLKIM-HENRMSAHKLSRQLGKTTAVAIFLAHYVCFNKDKAVGILAHK 190 Query: 94 RVTASKIMRNKIEFAYDRLPPWLRQKVPIVTDNVEEKIFANGSSIQVSTSA----RGDTL 149 A +++ + + A + LP +L+ IV N + + NGSSI S+ RG++ Sbjct: 191 GSMAVEVLE-RTKQAIELLPDFLQP--GIVEWNKKSIVLENGSSIGAYASSPDAVRGNSF 247 Query: 150 NWLHISEFGII-----CF 162 ++++I E I CF Sbjct: 248 SFIYIDECAFIQNWTDCF 265 >gi|25348|lcl|protein:vir:80989 Length: 607 # NCBI annotation: gp17 terminase DNA packaging enzyme large subunit # Family: family:all:147 # MgeID: mge:1888 # MgeName: Phi1 # Cross-refs: genbank:acc:YP_001469498;genbank:gi:157311455;genbank:Ge neID:5602125 Length = 607 Score = 40.4 bits (93), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 68/138 (49%), Gaps = 16/138 (11%) Query: 37 TVLFKPNEPQRKLLRRMWHRNIVPK---ARQRGFSTLIQIIILDACLFNENQRAAIIAQD 93 T+ + + Q+ +L+ M H N + +RQ G +T + I + FN+++ I+A Sbjct: 132 TIKVQLRDYQKDMLKIM-HENRMSAHKLSRQLGKTTAVAIFLAHYVCFNKDKAVGILAHK 190 Query: 94 RVTASKIMRNKIEFAYDRLPPWLRQKVPIVTDNVEEKIFANGSSIQVSTSA----RGDTL 149 A +++ + + A + LP +L+ IV N + + NGSSI S+ RG++ Sbjct: 191 GSMAVEVLE-RTKQAIELLPDFLQPG--IVEWNKKSIVLENGSSIGAYASSPDAVRGNSF 247 Query: 150 NWLHISEFGII-----CF 162 ++++I E I CF Sbjct: 248 SFIYIDECAFIQNWTDCF 265 >gi|24596|lcl|protein:vir:98262 Length: 609 # NCBI annotation: gp17 terminase subunit, nuclease and ATPase # Family: family:all:147 # MgeID: mge:1667 # MgeName: RB43 # Cross-refs: genbank:acc:YP_239195;genbank:gi:66391670;genbank:GeneID :3416364 Length = 609 Score = 37.7 bits (86), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 41/169 (24%), Positives = 79/169 (46%), Gaps = 15/169 (8%) Query: 37 TVLFKPNEPQRKLLRRMWHRN---IVPKARQRGFSTLIQIIILDACLFNENQRAAIIAQD 93 T+ + + Q+++L M H+N +RQ G +T++ I + FNE++ ++A Sbjct: 132 TIKVQLRDYQKEMLIEM-HKNRMVTCNLSRQLGKTTVVAIFLAHFVCFNEDKYVGVLAHK 190 Query: 94 RVTASKIM---RNKIEFAYDRLPPWLRQ--KVPIVTDNVEEKIFANGSSIQVSTSARGDT 148 +++++ + IE D L P + + K I DN + KI A SS + RG++ Sbjct: 191 ASMSAEVLDRTKQAIELLPDFLQPGIVEWNKGSIELDN-KCKIGAFASS---PDAVRGNS 246 Query: 149 LNWLHISEFGIICFESPTKAEKIVTGSLAAAAQGMIFIESTAKGRDGAY 197 ++I E I + T A + +++ + I I +T G + Y Sbjct: 247 FAMIYIDECAFI--PNFTDAWLAIQPVISSGRKSKILITTTPNGLNHFY 293 >gi|27701|lcl|protein:vir:6893 Length: 611 # NCBI annotation: gp17 terminase DNA packaging enzyme, large subunit # Family: family:all:147 # MgeID: mge:140 # MgeName: RB69 # Cross-refs: genbank:acc:NP_861869;genbank:gi:32453660;genbank:GeneID :1494295 Length = 611 Score = 37.0 bits (84), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 32/130 (24%), Positives = 64/130 (49%), Gaps = 9/130 (6%) Query: 37 TVLFKPNEPQRKLLRRMWHR--NIVPKARQRGFSTLIQIIILDACLFNENQRAAIIAQDR 94 T+ + + QR +L+ M + + +RQ G +T++ I + FN+++ I+A Sbjct: 134 TIKVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKG 193 Query: 95 VTASKIMRNKIEFAYDRLPPWLRQKVPIVTDNVEEKIFANGSSIQVSTSA----RGDTLN 150 +++++ ++ + A + LP +L+ IV N NGSSI S+ RG++ Sbjct: 194 SMSAEVL-DRTKQAIELLPDFLQPG--IVEWNKGSIQLDNGSSIGAYASSPDAVRGNSFA 250 Query: 151 WLHISEFGII 160 ++I E I Sbjct: 251 MIYIDECAFI 260 >gi|22056|lcl|protein:vir:103455 Length: 610 # NCBI annotation: terminase subunit nuclease and ATPase # Family: family:all:147 # MgeID: mge:1542 # MgeName: RB32 # Cross-refs: genbank:acc:YP_803107;genbank:gi:116326387;genbank:GeneI D:4405484 Length = 610 Score = 37.0 bits (84), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 9/121 (7%) Query: 46 QRKLLRRMWHR--NIVPKARQRGFSTLIQIIILDACLFNENQRAAIIAQDRVTASKIMRN 103 QR +L+ M + + +RQ G +T++ I + FN+++ I+A +++++ + Sbjct: 143 QRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVL-D 201 Query: 104 KIEFAYDRLPPWLRQKVPIVTDNVEEKIFANGSSIQVSTSA----RGDTLNWLHISEFGI 159 + + A + LP +L+ IV N NGSSI S+ RG++ ++I E Sbjct: 202 RTKQAIELLPDFLQPG--IVEWNKGSIELDNGSSIGAYASSPDAVRGNSFAMIYIDECAF 259 Query: 160 I 160 I Sbjct: 260 I 260 >gi|27407|lcl|protein:vir:7202 Length: 610 # NCBI annotation: gp17 terminase DNA packaging enzyme, large subunit # Family: family:all:147 # MgeID: mge:142 # MgeName: T4 # Cross-refs: genbank:acc:NP_049776;genbank:gi:9632591;genbank:GeneID: 1258647 Length = 610 Score = 36.6 bits (83), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 9/121 (7%) Query: 46 QRKLLRRMWHR--NIVPKARQRGFSTLIQIIILDACLFNENQRAAIIAQDRVTASKIMRN 103 QR +L+ M + + +RQ G +T++ I + FN+++ I+A +++++ + Sbjct: 143 QRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVL-D 201 Query: 104 KIEFAYDRLPPWLRQKVPIVTDNVEEKIFANGSSIQVSTSA----RGDTLNWLHISEFGI 159 + + A + LP +L+ IV N NGSSI S+ RG++ ++I E Sbjct: 202 RTKQAIELLPDFLQPG--IVEWNKGSIELDNGSSIGAYASSPDAVRGNSFAMIYIDECAF 259 Query: 160 I 160 I Sbjct: 260 I 260 >gi|23191|lcl|protein:vir:101186 Length: 613 # NCBI annotation: terminase DNA packaging enzyme large subunit # Family: family:all:147 # MgeID: mge:1582 # MgeName: 44RR2.8t # Cross-refs: genbank:acc:NP_932508;genbank:gi:37651634;genbank:GeneID :2610679 Length = 613 Score = 35.4 bits (80), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/158 (21%), Positives = 73/158 (46%), Gaps = 11/158 (6%) Query: 46 QRKLLRRMWHRNIVPK--ARQRGFSTLIQIIILDACLFNENQRAAIIAQDRVTASKIMRN 103 Q+ +LR M ++ +RQ G +T++ I + FN + I+A +++++ + Sbjct: 134 QKDMLRIMAGNRLMAANLSRQLGKTTVVAIFLAHFVCFNSAKNVGILAHKASMSAEVL-H 192 Query: 104 KIEFAYDRLPPWLRQKVPIVTDNVEEKIFANGSSIQVSTSA----RGDTLNWLHISEFGI 159 + + A + LP +L+ IV N NG +I +S+ RG++ +++ E Sbjct: 193 RTKQALELLPDFLQPG--IVEWNKGSITLGNGCAIGAFSSSPDAVRGNSFALIYVDEVAF 250 Query: 160 ICFESPTKAEKIVTGSLAAAAQGMIFIESTAKGRDGAY 197 I + T A + +++ + I + +T G + Y Sbjct: 251 I--PNFTDAWMAIQPVISSGRRSKILMTTTPNGLNHWY 286 >gi|21077|lcl|protein:vir:100538 Length: 612 # NCBI annotation: gp17 terminase subunit # Family: family:all:147 # MgeID: mge:1488 # MgeName: 25 # Cross-refs: genbank:acc:YP_656379;genbank:gi:109290130;genbank:GeneI D:4156516 Length = 612 Score = 35.0 bits (79), Expect = 0.002, Method: Compositional matrix adjust. Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 9/121 (7%) Query: 46 QRKLLRRMWHRNIVPK--ARQRGFSTLIQIIILDACLFNENQRAAIIAQDRVTASKIMRN 103 Q+ +LR M ++ +RQ G +T++ I + FN + I+A +++++ + Sbjct: 133 QKDMLRIMAGNRLMAANLSRQLGKTTVVAIFLAHFVCFNSAKNVGILAHKASMSAEVL-H 191 Query: 104 KIEFAYDRLPPWLRQKVPIVTDNVEEKIFANGSSIQVSTSA----RGDTLNWLHISEFGI 159 + + A + LP +L+ IV N NG +I +S+ RG++ ++I E Sbjct: 192 RTKQALELLPDFLQPG--IVEWNKGSITLGNGCAIGAFSSSPDAVRGNSFALIYIDEVAF 249 Query: 160 I 160 I Sbjct: 250 I 250 >gi|22942|lcl|protein:vir:101803 Length: 613 # NCBI annotation: gp17 # Family: family:all:147 # MgeID: mge:1580 # MgeName: 31 # Cross-refs: genbank:acc:YP_238880;genbank:gi:66391955;genbank:GeneID :3416630 Length = 613 Score = 35.0 bits (79), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/158 (21%), Positives = 73/158 (46%), Gaps = 11/158 (6%) Query: 46 QRKLLRRMWHRNIVPK--ARQRGFSTLIQIIILDACLFNENQRAAIIAQDRVTASKIMRN 103 Q+ +LR M ++ +RQ G +T++ I + FN + I+A +++++ + Sbjct: 134 QKDMLRIMAGNRLMAANLSRQLGKTTVVAIFLAHFVCFNSAKNVGILAHKASMSAEVL-H 192 Query: 104 KIEFAYDRLPPWLRQKVPIVTDNVEEKIFANGSSIQVSTSA----RGDTLNWLHISEFGI 159 + + A + LP +L+ IV N NG +I +S+ RG++ +++ E Sbjct: 193 RTKQALELLPDFLQPG--IVEWNKGSITLGNGCAIGAFSSSPDAVRGNSFALIYVDEVAF 250 Query: 160 ICFESPTKAEKIVTGSLAAAAQGMIFIESTAKGRDGAY 197 I + T A + +++ + I + +T G + Y Sbjct: 251 I--PNFTDAWMAIQPVISSGRRSKILMTTTPNGLNHWY 286 >gi|28182|lcl|protein:vir:108053 Length: 611 # NCBI annotation: gp17 terminase DNA packaging enzyme large subunit # Family: family:all:147 # MgeID: mge:2002 # MgeName: JS98 # Cross-refs: genbank:acc:YP_001595293;genbank:gi:161622599;genbank:Ge neID:5783772 Length = 611 Score = 35.0 bits (79), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/130 (24%), Positives = 63/130 (48%), Gaps = 9/130 (6%) Query: 37 TVLFKPNEPQRKLLRRMWHRNIVPK--ARQRGFSTLIQIIILDACLFNENQRAAIIAQDR 94 T+ + + QR +L+ M + +RQ G +T++ I + FN+++ I+A Sbjct: 134 TIKVQLRDYQRDMLKIMSKNRMTTCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKG 193 Query: 95 VTASKIMRNKIEFAYDRLPPWLRQKVPIVTDNVEEKIFANGSSIQVSTSA----RGDTLN 150 +++++ ++ + A + LP +L+ IV N NGSSI S+ RG++ Sbjct: 194 SMSAEVL-DRTKQAIELLPDFLQPG--IVEWNKGSIELDNGSSIGAYASSPDAVRGNSFA 250 Query: 151 WLHISEFGII 160 ++I E I Sbjct: 251 MIYIDECAFI 260 >gi|14353|lcl|protein:vir:3149 Length: 554 # NCBI annotation: unknown # Family: family:all:28407 # MgeID: mge:316 # MgeName: PhiCh1 # Cross-refs: genbank:acc:NP_665920;genbank:gi:22091106;genbank:GeneID :951323 Length = 554 Score = 29.6 bits (65), Expect = 0.079, Method: Compositional matrix adjust. Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 12/118 (10%) Query: 25 ENLYYILDKNGDTVLFKPNEPQRKLLRRMWHRNIVPKARQRGFSTLIQIIILDACL-FNE 83 ++ YY+LD++ L K + R LL HR+ G T I + L A L + Sbjct: 65 DDPYYLLDEHHGLWLDKFDSGDRILL---CHRD--------GLKTTITLAYLIAGLEYKS 113 Query: 84 NQRAAIIAQDRVTASKIMRNKIEFAYDRLPPWLRQKVPIVTDNVEEKIFANGSSIQVS 141 R +++ K + DR P + P + V+ K+FANGS + Sbjct: 114 GFRGIWAMNNQIQVGKKADTEFWKMVDRNPWLINLNAPPEKEAVKAKVFANGSILNAG 171 >gi|15353|lcl|protein:vir:9921 Length: 425 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:178 # MgeName: 315.6 # Cross-refs: genbank:acc:NP_795683;genbank:gi:28876465;genbank:GeneID :1257982 Length = 425 Score = 29.6 bits (65), Expect = 0.084, Method: Compositional matrix adjust. Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 4/84 (4%) Query: 405 LQGLGLKNIHIVPRTPDLMAIGIPALKEDFGNYVFDEEKCAQGILHLDNYRKKWNDNMGV 464 L+ LG+ + V + P + GI L + +++ DE +C + I L+NY K + Sbjct: 328 LRNLGIPRMIDVTKGPGTVMQGIQYLLQ--YDWIVDE-RCVKTIEELENYTWKKDKKTNE 384 Query: 465 WSETPHKNGHQHGADALRQKAQYR 488 ++ P + + H DA+R Q R Sbjct: 385 YTNEP-VDSYNHCIDAIRYAVQDR 407 >gi|5208|lcl|protein:vir:106641 Length: 446 # NCBI annotation: ORF005 # Family: family:all:54 # MgeID: mge:1557 # MgeName: 187 # Cross-refs: genbank:acc:YP_239489;genbank:gi:66395220;genbank:GeneID :4555795 Length = 446 Score = 29.3 bits (64), Expect = 0.13, Method: Compositional matrix adjust. Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%) Query: 441 EEKCAQGILHLDNYRKKWNDNMGVWSETPHKNGHQHGADALR 482 +E+C + I DNY K + N G + P + + H DALR Sbjct: 379 DERCYKTIEEFDNYTWKKDKNTGEYYNEP-VDTYNHCIDALR 419 >gi|7643|lcl|protein:vir:96370 Length: 447 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1613 # MgeName: 53 # Cross-refs: genbank:acc:YP_239642;genbank:gi:66395379;genbank:GeneID :5132846 Length = 447 Score = 28.5 bits (62), Expect = 0.21, Method: Compositional matrix adjust. Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 5/96 (5%) Query: 405 LQGLGLKNIHIVPRTPDLMAIGIPALKEDFGNYVFDEEKCAQGILHLDNYRKKWNDNMGV 464 L+ LGLK I + + G+ L + F + +E+C + I DNY + + + G Sbjct: 346 LRNLGLKRILPTKKGKGSVVQGLQFLMQ-FE--IIVDERCFKTIEEFDNYTWQKDKDTGE 402 Query: 465 WSETPHKNGHQHGADALRQKAQ-YREEVRRLVSVGG 499 ++ P + + H D+LR + + VR+ +V Sbjct: 403 YTNEP-VDTYNHCIDSLRYSVERFYRPVRKRTNVSS 437 >gi|11588|lcl|protein:vir:78831 Length: 447 # NCBI annotation: terminase large subunit # Family: family:all:54 # MgeID: mge:1858 # MgeName: 80alpha # Cross-refs: genbank:acc:YP_001285355;genbank:gi:148717883;genbank:Ge neID:5246962 Length = 447 Score = 28.5 bits (62), Expect = 0.21, Method: Compositional matrix adjust. Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 5/96 (5%) Query: 405 LQGLGLKNIHIVPRTPDLMAIGIPALKEDFGNYVFDEEKCAQGILHLDNYRKKWNDNMGV 464 L+ LGLK I + + G+ L + F + +E+C + I DNY + + + G Sbjct: 346 LRNLGLKRILPTKKGKGSVVQGLQFLMQ-FE--IIVDERCFKTIEEFDNYTWQKDKDTGE 402 Query: 465 WSETPHKNGHQHGADALRQKAQ-YREEVRRLVSVGG 499 ++ P + + H D+LR + + VR+ +V Sbjct: 403 YTNEP-VDTYNHCIDSLRYSVERFYRPVRKRTNVSS 437 >gi|9829|lcl|protein:vir:103950 Length: 425 # NCBI annotation: phage terminase large subunit # Family: family:all:54 # MgeID: mge:1662 # MgeName: phiNM # Cross-refs: genbank:acc:YP_873987;genbank:gi:118430762;genbank:GeneI D:4525444 Length = 425 Score = 28.5 bits (62), Expect = 0.22, Method: Compositional matrix adjust. Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 5/96 (5%) Query: 405 LQGLGLKNIHIVPRTPDLMAIGIPALKEDFGNYVFDEEKCAQGILHLDNYRKKWNDNMGV 464 L+ LGLK I + + G+ L + F + +E+C + I DNY + + + G Sbjct: 324 LRNLGLKRILPTKKGKGSVVQGLQFLMQ-FE--IIVDERCFKTIEEFDNYTWQKDKDTGE 380 Query: 465 WSETPHKNGHQHGADALRQKAQ-YREEVRRLVSVGG 499 ++ P + + H D+LR + + VR+ +V Sbjct: 381 YTNEP-VDTYNHCIDSLRYSVERFYRPVRKRTNVSS 415 >gi|2779|lcl|protein:vir:99776 Length: 425 # NCBI annotation: large terminase # Family: family:all:54 # MgeID: mge:1497 # MgeName: phiETA2 # Cross-refs: genbank:acc:YP_001004302;genbank:gi:122891756;genbank:Ge neID:4712331 Length = 425 Score = 28.1 bits (61), Expect = 0.23, Method: Compositional matrix adjust. Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 5/96 (5%) Query: 405 LQGLGLKNIHIVPRTPDLMAIGIPALKEDFGNYVFDEEKCAQGILHLDNYRKKWNDNMGV 464 L+ LGLK I + + G+ L + + +E+C + I DNY + + + G Sbjct: 324 LRNLGLKRILPTKKGKGSVVQGLQFLMQ---FEIIVDERCFKTIEEFDNYTWQKDKDTGE 380 Query: 465 WSETPHKNGHQHGADALRQKAQ-YREEVRRLVSVGG 499 ++ P + + H D+LR + + VR+ +V Sbjct: 381 YTNEP-VDTYNHCIDSLRYSVERFYRPVRKRTNVSS 415 >gi|7301|lcl|protein:vir:96238 Length: 447 # NCBI annotation: ORF008 # Family: family:all:54 # MgeID: mge:1607 # MgeName: 69 # Cross-refs: genbank:acc:YP_239566;genbank:gi:66395301;genbank:GeneID :5132787 Length = 447 Score = 27.7 bits (60), Expect = 0.30, Method: Compositional matrix adjust. Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 4/82 (4%) Query: 405 LQGLGLKNIHIVPRTPDLMAIGIPALKEDFGNYVFDEEKCAQGILHLDNYRKKWNDNMGV 464 L+ LGLK I + + G+ L + F + +E+C + I DNY + + + G Sbjct: 346 LRNLGLKRILPTKKGKGSVVQGLQFLMQ-FE--IIVDERCFKTIEEFDNYTWQKDKDTGE 402 Query: 465 WSETPHKNGHQHGADALRQKAQ 486 ++ P + + H D+LR + Sbjct: 403 YTNEP-VDTYNHCIDSLRYSVE 423 >gi|17691|lcl|protein:vir:9305 Length: 447 # NCBI annotation: large terminase # Family: family:all:54 # MgeID: mge:165 # MgeName: phi 11 # Cross-refs: genbank:acc:NP_803283;genbank:gi:29028593;genbank:GeneID :1258039 Length = 447 Score = 27.7 bits (60), Expect = 0.30, Method: Compositional matrix adjust. Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 4/82 (4%) Query: 405 LQGLGLKNIHIVPRTPDLMAIGIPALKEDFGNYVFDEEKCAQGILHLDNYRKKWNDNMGV 464 L+ LGLK I + + G+ L + F + +E+C + I DNY + + + G Sbjct: 346 LRNLGLKRILPTKKGKGSVVQGLQFLMQ-FE--IIVDERCFKTIEEFDNYTWQKDKDTGE 402 Query: 465 WSETPHKNGHQHGADALRQKAQ 486 ++ P + + H D+LR + Sbjct: 403 YTNEP-VDTYNHCIDSLRYSVE 423 >gi|15492|lcl|protein:vir:732 Length: 402 # NCBI annotation: unknown # Family: family:all:144 # MgeID: mge:14 # MgeName: Tuc2009 # Cross-refs: genbank:acc:NP_108709;genbank:gi:13487831;genbank:GeneID :920905 Length = 402 Score = 25.4 bits (54), Expect = 1.5, Method: Compositional matrix adjust. Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 8/82 (9%) Query: 66 GFSTLIQIIILDACL-FNENQRAAIIAQDRVTASKIMRNKIEFAYDR-LPPWLRQKVPIV 123 GF+ ++ II + + EN A + +RV AS+I RN ++ R + ++ KV Sbjct: 262 GFADVLDIIYTQKPMEYTENAVANQLINNRVNASRIERNNGGRSFARSVRDKIQGKVACA 321 Query: 124 T------DNVEEKIFANGSSIQ 139 +N E +I++N I+ Sbjct: 322 VEDFFQGNNKEARIYSNSYWIE 343 >gi|9695|lcl|protein:vir:102601 Length: 545 # NCBI annotation: gp2 # Family: family:all:1551 # MgeID: mge:1661 # MgeName: Llij # Cross-refs: genbank:acc:YP_654998;genbank:gi:109392188;genbank:GeneI D:4157223 Length = 545 Score = 25.4 bits (54), Expect = 1.6, Method: Compositional matrix adjust. Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 6/96 (6%) Query: 281 EKMWQEYPSTVREAFKVSVEGVILAKQMSIARSQNRITRVPYRPELPVNTFWDLGVDDDI 340 E W Y ST + + S+E +LA+ SIAR + + P L W DD+ Sbjct: 220 EDPWTLYTSTAGQPGQGSIEEDVLAEAESIARGERQ------DPSLFFFRRWAGDEHDDL 273 Query: 341 AIWFHQAVGLVDHFIDYFECSSEPYSFVMAQFQRTG 376 + + + D E + + + RTG Sbjct: 274 STVEKRVAAVADATGPIGEWGPGQFERIAKDYDRTG 309 >gi|8440|lcl|protein:vir:105818 Length: 545 # NCBI annotation: gp2 # Family: family:all:1551 # MgeID: mge:1636 # MgeName: PMC # Cross-refs: genbank:acc:YP_655763;genbank:gi:109522086;genbank:GeneI D:4157626 Length = 545 Score = 25.4 bits (54), Expect = 1.6, Method: Compositional matrix adjust. Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 6/96 (6%) Query: 281 EKMWQEYPSTVREAFKVSVEGVILAKQMSIARSQNRITRVPYRPELPVNTFWDLGVDDDI 340 E W Y ST + + S+E +LA+ SIAR + + P L W DD+ Sbjct: 220 EDPWTLYTSTAGQPGQGSIEEDVLAEAESIARGERQ------DPSLFFFRRWAGDEHDDL 273 Query: 341 AIWFHQAVGLVDHFIDYFECSSEPYSFVMAQFQRTG 376 + + + D E + + + RTG Sbjct: 274 STVEKRVAAVADATGPIGEWGPGQFERIAKDYDRTG 309 >gi|18273|lcl|protein:vir:7986 Length: 545 # NCBI annotation: gp2 # Family: family:all:1551 # MgeID: mge:151 # MgeName: Che8 # Cross-refs: genbank:acc:NP_817340;genbank:gi:29565768;genbank:GeneID :1259002 Length = 545 Score = 25.4 bits (54), Expect = 1.6, Method: Compositional matrix adjust. Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 6/96 (6%) Query: 281 EKMWQEYPSTVREAFKVSVEGVILAKQMSIARSQNRITRVPYRPELPVNTFWDLGVDDDI 340 E W Y ST + + S+E +LA+ SIAR + + P L W DD+ Sbjct: 220 EDPWTLYTSTAGQPGQGSIEEDVLAEAESIARGERQ------DPSLFFFRRWAGDEHDDL 273 Query: 341 AIWFHQAVGLVDHFIDYFECSSEPYSFVMAQFQRTG 376 + + + D E + + + RTG Sbjct: 274 STVEKRVAAVADATGPIGEWGPGQFERIAKDYDRTG 309 >gi|291|lcl|protein:vir:3608 Length: 462 # NCBI annotation: TerL # Family: family:all:144 # MgeID: mge:74 # MgeName: TP901-1 # Cross-refs: genbank:acc:NP_112694;genbank:gi:13786562;genbank:GeneID :921033 Length = 462 Score = 25.4 bits (54), Expect = 1.8, Method: Compositional matrix adjust. Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%) Query: 66 GFSTLIQIIILDACL-FNENQRAAIIAQDRVTASKIMRN 103 GF+ ++ II + + EN A + +RV AS+I RN Sbjct: 322 GFADVLDIIYTQKPMEYTENAVANQLINNRVNASRIERN 360 >gi|13633|lcl|protein:vir:3963 Length: 462 # NCBI annotation: putative terminase large subunit # Family: family:all:144 # MgeID: mge:83 # MgeName: ul36 # Cross-refs: genbank:acc:NP_663671;genbank:gi:21716108;genbank:GeneID :951204 Length = 462 Score = 25.0 bits (53), Expect = 1.9, Method: Compositional matrix adjust. Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%) Query: 66 GFSTLIQIIILDACL-FNENQRAAIIAQDRVTASKIMRN 103 GF+ ++ II + + EN A + +RV AS+I RN Sbjct: 322 GFADVLDIIYTQKPMEYTENAVANQLINNRVNASRIERN 360 >gi|11420|lcl|protein:vir:78630 Length: 563 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1855 # MgeName: tp310-2 # Cross-refs: genbank:acc:YP_001429940;genbank:gi:156603994;genbank:Ge neID:5525376 Length = 563 Score = 24.6 bits (52), Expect = 2.5, Method: Compositional matrix adjust. Identities = 12/38 (31%), Positives = 23/38 (60%) Query: 263 AKRAWYVSTRRSDFADEDEKMWQEYPSTVREAFKVSVE 300 A+R +++ R + FA+ DE + +YP+ + VS+E Sbjct: 314 AERGDFITKRFNIFANNDEMSFIDYPTLQKNNEIVSLE 351 >gi|3108|lcl|protein:vir:94427 Length: 563 # NCBI annotation: ORF005 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1506 # MgeName: 47 # Cross-refs: genbank:acc:YP_240002;genbank:gi:66395661;genbank:GeneID :5133087 Length = 563 Score = 24.6 bits (52), Expect = 2.5, Method: Compositional matrix adjust. Identities = 12/38 (31%), Positives = 23/38 (60%) Query: 263 AKRAWYVSTRRSDFADEDEKMWQEYPSTVREAFKVSVE 300 A+R +++ R + FA+ DE + +YP+ + VS+E Sbjct: 314 AERGDFITKRFNIFANNDEMSFIDYPTLQKNNEIVSLE 351 >gi|2221|lcl|protein:vir:93883 Length: 563 # NCBI annotation: ORF005 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1485 # MgeName: 3A # Cross-refs: genbank:acc:YP_239935;genbank:gi:66395593;genbank:GeneID :5130949 Length = 563 Score = 24.6 bits (52), Expect = 2.5, Method: Compositional matrix adjust. Identities = 12/38 (31%), Positives = 23/38 (60%) Query: 263 AKRAWYVSTRRSDFADEDEKMWQEYPSTVREAFKVSVE 300 A+R +++ R + FA+ DE + +YP+ + VS+E Sbjct: 314 AERGDFITKRFNIFANNDEMSFIDYPTLQKNNEIVSLE 351 >gi|18074|lcl|protein:vir:5954 Length: 422 # NCBI annotation: hypothetical protein # Family: family:all:54 # MgeID: mge:125 # MgeName: SPP1 # Cross-refs: genbank:acc:NP_690654;genbank:geneid:6329138;genbank:gi: 22855048;goa:P54308;interpro:IPR006437;interpro:IPR00670 1;interpro:IPR011441;uniprot:P54308;genbank:GeneID:95525 4 Length = 422 Score = 24.3 bits (51), Expect = 3.4, Method: Compositional matrix adjust. Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 6/34 (17%) Query: 11 DELKAKFADPMW------RIENLYYILDKNGDTV 38 DEL A DP+ EN+ Y DKNGD + Sbjct: 358 DELDAIVIDPLRTPNIAREFENIDYQTDKNGDPI 391 >gi|3326|lcl|protein:vir:94525 Length: 440 # NCBI annotation: putative large subunit terminase # Family: family:all:54 # MgeID: mge:1510 # MgeName: phiJL-1 # Cross-refs: genbank:acc:YP_223885;genbank:gi:62327097;genbank:GeneID :5075541 Length = 440 Score = 23.9 bits (50), Expect = 5.0, Method: Compositional matrix adjust. Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 19/56 (33%) Query: 427 IPALKEDFGNYVFDEEKCAQGILHLDNYRKKWNDNMGVWSETPHKNGHQHGADALR 482 + L E+F YV+D +K G W P K+ + H DALR Sbjct: 375 VKGLMEEFNTYVYDMDK------------------EGNWLNKP-KDANNHAIDALR 411 >gi|17412|lcl|protein:vir:2682 Length: 563 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:57 # MgeName: phiSLT # Cross-refs: genbank:acc:NP_075501;genbank:gi:12719430;genbank:GeneID :920187 Length = 563 Score = 23.5 bits (49), Expect = 5.7, Method: Compositional matrix adjust. Identities = 47/202 (23%), Positives = 82/202 (40%), Gaps = 23/202 (11%) Query: 111 RLPPWLRQKVPIVTDNVEEKIFANGSSIQVSTSARGDTLNWLHISEFGIICFESPTKAEK 170 + P LR+ + D + + Q S S + D LN H+ F I K Sbjct: 161 KASPKLRENFRPLRDEIHYDATISKIMPQASDSDKLDGLN-THMGIFDEIHEFKDYKLIS 219 Query: 171 IVTGSLAAAAQGM-IFIESTAKGRDGAYYNMVMEALALAEAGKRLNRLQYRL-------- 221 ++ S AA Q + I+I + DG +MV + R Y L Sbjct: 220 VIKNSRAARLQPLLIYITTAGYQLDGPLVDMVEAGRDTLDQIIEDERTFYYLASLDDDDD 279 Query: 222 --HFASWWDADEYAMDPH-GVIIEPKDHKYFDELEREIGRPISEAKRAWYVSTRRSDFAD 278 ++W A+ P+ GV I+ + K +E E+ P A+R +++ R + FA+ Sbjct: 280 INDSSNWIKAN-----PNLGVSIDLDEMK--EEWEKAKRTP---AERGDFITKRFNIFAN 329 Query: 279 EDEKMWQEYPSTVREAFKVSVE 300 DE + +YP+ + +S++ Sbjct: 330 NDEMSFIDYPTLQKNNEIISLD 351 >gi|14327|lcl|protein:vir:9358 Length: 453 # NCBI annotation: terminase-large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:166 # MgeName: phi 12 # Cross-refs: genbank:acc:NP_803336;genbank:gi:29028647;genbank:GeneID :1258090 Length = 453 Score = 23.5 bits (49), Expect = 5.8, Method: Compositional matrix adjust. Identities = 51/209 (24%), Positives = 87/209 (41%), Gaps = 37/209 (17%) Query: 111 RLPPWLRQKVPIVTDNVEEKIFANGSSIQVSTSARGDTLNWLHISEFGIICFESPTKAEK 170 + P LR+ + D + + Q S S + D LN H+ F I K Sbjct: 51 KASPKLRENFRPLRDEIHYDATISKIMPQASDSDKLDGLN-THMGIFDEIHEFKDYKLIS 109 Query: 171 IVTGSLAAAAQGM-IFIESTAKGRDGAYYNMVMEALALAEAGK-RLNRL----QYRLHFA 224 ++ S AA Q + I+I + DG NMV EAG+ L+R+ + + A Sbjct: 110 VIKNSRAARLQPLLIYITTAGYQLDGPLVNMV-------EAGRDTLDRIIEDERTFYYLA 162 Query: 225 S------------WWDADEYAMDPH-GVIIEPKDHKYFDELEREIGRPISEAKRAWYVST 271 S W A+ P+ GV I+ + K +E E+ P +R +++ Sbjct: 163 SLDDDDDINDSSNWIKAN-----PNLGVSIDLAEMK--EEWEKAKRTP---DERGDFITK 212 Query: 272 RRSDFADEDEKMWQEYPSTVREAFKVSVE 300 R + FA+ DE + +YP+ + +S++ Sbjct: 213 RFNIFANNDEMSFIDYPTLQKNNDIISLD 241 >gi|8807|lcl|protein:vir:96981 Length: 563 # NCBI annotation: ORF003 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1643 # MgeName: 42e # Cross-refs: genbank:acc:YP_239856;genbank:gi:66395511;genbank:GeneID :5133014 Length = 563 Score = 23.5 bits (49), Expect = 7.1, Method: Compositional matrix adjust. Identities = 51/209 (24%), Positives = 87/209 (41%), Gaps = 37/209 (17%) Query: 111 RLPPWLRQKVPIVTDNVEEKIFANGSSIQVSTSARGDTLNWLHISEFGIICFESPTKAEK 170 + P LR+ + D + + Q S S + D LN H+ F I K Sbjct: 161 KASPKLRENFRPLRDEIHYDATISKIMPQASDSDKLDGLN-THMGIFDEIHEFKDYKLIS 219 Query: 171 IVTGSLAAAAQGM-IFIESTAKGRDGAYYNMVMEALALAEAGK-RLNRL----QYRLHFA 224 ++ S AA Q + I+I + DG NMV EAG+ L+R+ + + A Sbjct: 220 VIKNSRAARLQPLLIYITTAGYQLDGPLVNMV-------EAGRDTLDRIIEDERTFYYLA 272 Query: 225 S------------WWDADEYAMDPH-GVIIEPKDHKYFDELEREIGRPISEAKRAWYVST 271 S W A+ P+ GV I+ + K +E E+ P +R +++ Sbjct: 273 SLDDDDDINDSSNWIKAN-----PNLGVSIDLDEMK--EEWEKAKRTP---DERGDFITK 322 Query: 272 RRSDFADEDEKMWQEYPSTVREAFKVSVE 300 R + FA+ DE + +YP+ + +S++ Sbjct: 323 RFNIFANNDEMSFIDYPTLQKNNDIISLD 351 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.322 0.137 0.422 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 239,557 Number of Sequences: 514 Number of extensions: 11520 Number of successful extensions: 117 Number of sequences better than 100.0: 48 Number of HSP's better than 100.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 16 Number of HSP's that attempted gapping in prelim test: 30 Number of HSP's gapped (non-prelim): 63 length of query: 514 length of database: 206,069 effective HSP length: 76 effective length of query: 438 effective length of database: 167,005 effective search space: 73148190 effective search space used: 73148190 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 39 (19.6 bits)