BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|Aclame:protein:vir:1429|NCBI_annot:putative terminase (large subunit)|genbank:acc:NP_536358;genbank:gi:17975163;genbank:Gene ID:929161 (570 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|13932|lcl|protein:vir:1429 Length: 570 # NCBI annotation: put... 1191 0.0 gi|8562|lcl|protein:vir:100097 Length: 571 # NCBI annotation: gp... 1134 0.0 gi|12826|lcl|protein:vir:80335 Length: 571 # NCBI annotation: gp... 1057 0.0 gi|17922|lcl|protein:vir:4452 Length: 577 # NCBI annotation: Ter... 833 0.0 gi|19315|lcl|protein:vir:4508 Length: 577 # NCBI annotation: lar... 830 0.0 gi|593|lcl|protein:vir:481 Length: 570 # NCBI annotation: putati... 823 0.0 gi|1289|lcl|protein:vir:105086 Length: 569 # NCBI annotation: pu... 605 e-175 gi|986|lcl|protein:vir:5736 Length: 577 # NCBI annotation: termi... 587 e-169 gi|17978|lcl|protein:vir:4335 Length: 563 # NCBI annotation: ter... 454 e-129 gi|13199|lcl|protein:vir:81178 Length: 567 # NCBI annotation: pu... 272 9e-75 gi|8690|lcl|protein:vir:102145 Length: 581 # NCBI annotation: ph... 251 1e-68 gi|17128|lcl|protein:vir:1379 Length: 581 # NCBI annotation: put... 222 1e-59 gi|2959|lcl|protein:vir:102079 Length: 565 # NCBI annotation: te... 219 5e-59 gi|2423|lcl|protein:vir:107576 Length: 565 # NCBI annotation: ph... 218 1e-58 gi|2370|lcl|protein:vir:105001 Length: 565 # NCBI annotation: pu... 218 1e-58 gi|2476|lcl|protein:vir:102883 Length: 565 # NCBI annotation: ph... 218 1e-58 gi|11420|lcl|protein:vir:78630 Length: 563 # NCBI annotation: pu... 211 3e-56 gi|3108|lcl|protein:vir:94427 Length: 563 # NCBI annotation: ORF... 211 3e-56 gi|2221|lcl|protein:vir:93883 Length: 563 # NCBI annotation: ORF... 210 4e-56 gi|17412|lcl|protein:vir:2682 Length: 563 # NCBI annotation: ter... 207 3e-55 gi|8807|lcl|protein:vir:96981 Length: 563 # NCBI annotation: ORF... 204 2e-54 gi|967|lcl|protein:vir:6208 Length: 574 # NCBI annotation: Termi... 201 1e-53 gi|12641|lcl|protein:vir:80117 Length: 572 # NCBI annotation: Ph... 160 4e-41 gi|5726|lcl|protein:vir:95379 Length: 573 # NCBI annotation: pha... 160 5e-41 gi|6158|lcl|protein:vir:98395 Length: 564 # NCBI annotation: pha... 149 6e-38 gi|16578|lcl|protein:vir:9406 Length: 564 # NCBI annotation: ter... 149 6e-38 gi|13570|lcl|protein:vir:4696 Length: 564 # NCBI annotation: phi... 149 6e-38 gi|12519|lcl|protein:vir:79971 Length: 564 # NCBI annotation: te... 149 7e-38 gi|13171|lcl|protein:vir:81099 Length: 564 # NCBI annotation: pu... 149 7e-38 gi|13389|lcl|protein:vir:1263 Length: 416 # NCBI annotation: hyp... 149 1e-37 gi|15101|lcl|protein:vir:3867 Length: 563 # NCBI annotation: put... 147 4e-37 gi|17436|lcl|protein:vir:4596 Length: 564 # NCBI annotation: hyp... 146 6e-37 gi|14327|lcl|protein:vir:9358 Length: 453 # NCBI annotation: ter... 142 1e-35 gi|3559|lcl|protein:vir:101786 Length: 556 # NCBI annotation: gp... 142 1e-35 gi|16631|lcl|protein:vir:9699 Length: 584 # NCBI annotation: hyp... 137 3e-34 gi|17547|lcl|protein:vir:959 Length: 592 # NCBI annotation: term... 124 3e-30 gi|19384|lcl|protein:vir:7851 Length: 887 # NCBI annotation: gp8... 115 2e-27 gi|15611|lcl|protein:vir:188 Length: 504 # NCBI annotation: term... 113 6e-27 gi|16408|lcl|protein:vir:1883 Length: 504 # NCBI annotation: ter... 110 5e-26 gi|15774|lcl|protein:vir:6239 Length: 527 # NCBI annotation: gp3... 99 1e-22 gi|17903|lcl|protein:vir:1080 Length: 604 # NCBI annotation: ter... 97 6e-22 gi|15412|lcl|protein:vir:1325 Length: 519 # NCBI annotation: gp3... 94 3e-21 gi|19237|lcl|protein:vir:3842 Length: 624 # NCBI annotation: hyp... 85 2e-18 gi|17207|lcl|protein:vir:7405 Length: 646 # NCBI annotation: put... 80 5e-17 gi|15731|lcl|protein:vir:4950 Length: 623 # NCBI annotation: put... 79 1e-16 gi|13853|lcl|protein:vir:4826 Length: 625 # NCBI annotation: ORF... 78 2e-16 gi|18188|lcl|protein:vir:4993 Length: 623 # NCBI annotation: put... 78 3e-16 gi|830|lcl|protein:vir:93598 Length: 553 # NCBI annotation: puta... 78 3e-16 gi|14114|lcl|protein:vir:3986 Length: 657 # NCBI annotation: put... 75 3e-15 gi|14802|lcl|protein:vir:1021 Length: 660 # NCBI annotation: ter... 74 6e-15 gi|3997|lcl|protein:vir:100199 Length: 629 # NCBI annotation: pu... 73 1e-14 gi|6465|lcl|protein:vir:101288 Length: 553 # NCBI annotation: ph... 72 1e-14 gi|18552|lcl|protein:vir:9506 Length: 553 # NCBI annotation: hyp... 72 1e-14 gi|6615|lcl|protein:vir:95986 Length: 553 # NCBI annotation: ORF... 70 7e-14 gi|1545|lcl|protein:vir:100880 Length: 630 # NCBI annotation: pu... 69 2e-13 gi|1673|lcl|protein:vir:100634 Length: 553 # NCBI annotation: 77... 69 2e-13 gi|11068|lcl|protein:vir:78311 Length: 547 # NCBI annotation: pu... 64 4e-12 gi|9232|lcl|protein:vir:97071 Length: 561 # NCBI annotation: put... 61 3e-11 gi|19650|lcl|protein:vir:10361 Length: 561 # NCBI annotation: te... 60 7e-11 gi|8010|lcl|protein:vir:100250 Length: 570 # NCBI annotation: gp... 59 1e-10 gi|13082|lcl|protein:vir:81073 Length: 569 # NCBI annotation: p0... 59 1e-10 gi|19024|lcl|protein:vir:9640 Length: 576 # NCBI annotation: lar... 58 3e-10 gi|7042|lcl|protein:vir:98644 Length: 576 # NCBI annotation: put... 57 4e-10 gi|15547|lcl|protein:vir:856 Length: 540 # NCBI annotation: puta... 52 1e-08 gi|14824|lcl|protein:vir:4088 Length: 550 # NCBI annotation: ter... 51 4e-08 gi|4336|lcl|protein:vir:94893 Length: 540 # NCBI annotation: put... 50 5e-08 gi|1848|lcl|protein:vir:93873 Length: 540 # NCBI annotation: put... 49 1e-07 gi|19080|lcl|protein:vir:1659 Length: 540 # NCBI annotation: ter... 49 2e-07 gi|2310|lcl|protein:vir:93989 Length: 540 # NCBI annotation: put... 48 4e-07 gi|19608|lcl|protein:vir:4081 Length: 518 # NCBI annotation: ter... 45 3e-06 gi|16679|lcl|protein:vir:4222 Length: 593 # NCBI annotation: pre... 39 1e-04 gi|10890|lcl|protein:vir:78144 Length: 530 # NCBI annotation: pr... 39 2e-04 gi|17795|lcl|protein:vir:2426 Length: 595 # NCBI annotation: gp1... 37 5e-04 gi|9490|lcl|protein:vir:104081 Length: 594 # NCBI annotation: gp... 35 0.002 gi|13269|lcl|protein:vir:81252 Length: 542 # NCBI annotation: gp... 31 0.033 gi|16473|lcl|protein:vir:7767 Length: 566 # NCBI annotation: gp1... 30 0.055 gi|11235|lcl|protein:vir:78494 Length: 562 # NCBI annotation: Pu... 30 0.078 gi|10332|lcl|protein:vir:97407 Length: 514 # NCBI annotation: te... 30 0.081 gi|10991|lcl|protein:vir:78228 Length: 903 # NCBI annotation: Pu... 30 0.084 gi|19975|lcl|protein:vir:108214 Length: 544 # NCBI annotation: g... 28 0.32 gi|19929|lcl|protein:vir:4852 Length: 369 # NCBI annotation: put... 27 0.85 gi|24012|lcl|protein:vir:104946 Length: 547 # NCBI annotation: T... 26 1.5 gi|14207|lcl|protein:vir:8315 Length: 503 # NCBI annotation: gp3... 25 1.7 gi|6388|lcl|protein:vir:98470 Length: 536 # NCBI annotation: hyp... 25 3.1 gi|3478|lcl|protein:vir:101370 Length: 494 # NCBI annotation: Pa... 25 3.5 gi|23580|lcl|protein:vir:102747 Length: 622 # NCBI annotation: t... 24 4.2 gi|3859|lcl|protein:vir:107748 Length: 532 # NCBI annotation: gp... 24 5.9 >gi|13932|lcl|protein:vir:1429 Length: 570 # NCBI annotation: putative terminase (large subunit) # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:30 # MgeName: phiE125 # Cross-refs: genbank:acc:NP_536358;genbank:gi:17975163;genbank:GeneID :929161 Length = 570 Score = 1191 bits (3082), Expect = 0.0, Method: Compositional matrix adjust. Identities = 570/570 (100%), Positives = 570/570 (100%) Query: 1 MATNFPRVEQGLKFARDVVRGKRPACRYVQLACKRHLDDLAASRKKDFRWKFDPEAAERK 60 MATNFPRVEQGLKFARDVVRGKRPACRYVQLACKRHLDDLAASRKKDFRWKFDPEAAERK Sbjct: 1 MATNFPRVEQGLKFARDVVRGKRPACRYVQLACKRHLDDLAASRKKDFRWKFDPEAAERK 60 Query: 61 LALIELLPHTKGEWAFKGQLVTLEPWQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGK 120 LALIELLPHTKGEWAFKGQLVTLEPWQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGK Sbjct: 61 LALIELLPHTKGEWAFKGQLVTLEPWQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGK 120 Query: 121 SVTAAGVGIGMFVLDDEFGAEVYAGATTEKQAWEVFRPAQLMVKRSPMLIDSAGIEVNAS 180 SVTAAGVGIGMFVLDDEFGAEVYAGATTEKQAWEVFRPAQLMVKRSPMLIDSAGIEVNAS Sbjct: 121 SVTAAGVGIGMFVLDDEFGAEVYAGATTEKQAWEVFRPAQLMVKRSPMLIDSAGIEVNAS 180 Query: 181 NMNKPADGSRFEPIIGNPGDGASPSCAIVDEYHEHDSAALYETMLTGMGARRQPLMFIIT 240 NMNKPADGSRFEPIIGNPGDGASPSCAIVDEYHEHDSAALYETMLTGMGARRQPLMFIIT Sbjct: 181 NMNKPADGSRFEPIIGNPGDGASPSCAIVDEYHEHDSAALYETMLTGMGARRQPLMFIIT 240 Query: 241 TAGANIEGPCFDKRRQVIEMLEGTVPDDELFGWIWTIDEGDDWTDPRVLAKANPNIGISV 300 TAGANIEGPCFDKRRQVIEMLEGTVPDDELFGWIWTIDEGDDWTDPRVLAKANPNIGISV Sbjct: 241 TAGANIEGPCFDKRRQVIEMLEGTVPDDELFGWIWTIDEGDDWTDPRVLAKANPNIGISV 300 Query: 301 YQDYLESQQQRAIKSARFTNTFKTKHLNVWTSAKAGYFNLEDWKSCEDRSLTLEQFEGQD 360 YQDYLESQQQRAIKSARFTNTFKTKHLNVWTSAKAGYFNLEDWKSCEDRSLTLEQFEGQD Sbjct: 301 YQDYLESQQQRAIKSARFTNTFKTKHLNVWTSAKAGYFNLEDWKSCEDRSLTLEQFEGQD 360 Query: 361 CVLALDMARKLDLNSMARLFWHDIDGRRHYFCVAPRFWVPEDTVRNTENRRMAERYQAWV 420 CVLALDMARKLDLNSMARLFWHDIDGRRHYFCVAPRFWVPEDTVRNTENRRMAERYQAWV Sbjct: 361 CVLALDMARKLDLNSMARLFWHDIDGRRHYFCVAPRFWVPEDTVRNTENRRMAERYQAWV 420 Query: 421 NQGCLLETDGAEIDYRDILEEAKDANRLCPVQCTPLDPHGATNLSHQLADEGLTPVTIVQ 480 NQGCLLETDGAEIDYRDILEEAKDANRLCPVQCTPLDPHGATNLSHQLADEGLTPVTIVQ Sbjct: 421 NQGCLLETDGAEIDYRDILEEAKDANRLCPVQCTPLDPHGATNLSHQLADEGLTPVTIVQ 480 Query: 481 NYTNMSDPMKELEAAITSGRFHHDGNPIMTWCVSNVIGKNLPGNDDVVRPIKQGNDNKID 540 NYTNMSDPMKELEAAITSGRFHHDGNPIMTWCVSNVIGKNLPGNDDVVRPIKQGNDNKID Sbjct: 481 NYTNMSDPMKELEAAITSGRFHHDGNPIMTWCVSNVIGKNLPGNDDVVRPIKQGNDNKID 540 Query: 541 GAVALIMAVGRAMLADRVDSESIYDQGVGV 570 GAVALIMAVGRAMLADRVDSESIYDQGVGV Sbjct: 541 GAVALIMAVGRAMLADRVDSESIYDQGVGV 570 >gi|8562|lcl|protein:vir:100097 Length: 571 # NCBI annotation: gp2 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1639 # MgeName: phi1026b # Cross-refs: genbank:acc:NP_945032;genbank:gi:38707892;genbank:GeneID :2744144 Length = 571 Score = 1134 bits (2934), Expect = 0.0, Method: Compositional matrix adjust. Identities = 540/560 (96%), Positives = 549/560 (98%) Query: 1 MATNFPRVEQGLKFARDVVRGKRPACRYVQLACKRHLDDLAASRKKDFRWKFDPEAAERK 60 MATNFPRVEQGLKFARDVVRGKRPACRYVQLACKRHLDDLAASRKKDFRWKFDPEAAERK Sbjct: 1 MATNFPRVEQGLKFARDVVRGKRPACRYVQLACKRHLDDLAASRKKDFRWKFDPEAAERK 60 Query: 61 LALIELLPHTKGEWAFKGQLVTLEPWQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGK 120 LALIELLPHTKGEWAF+ QLVTLEPWQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGK Sbjct: 61 LALIELLPHTKGEWAFRKQLVTLEPWQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGK 120 Query: 121 SVTAAGVGIGMFVLDDEFGAEVYAGATTEKQAWEVFRPAQLMVKRSPMLIDSAGIEVNAS 180 SV AAGVGIGMFVLDDEFGAEVYAGATTEKQAWEVFRPA+LMVKRSP LI +A IEVNAS Sbjct: 121 SVIAAGVGIGMFVLDDEFGAEVYAGATTEKQAWEVFRPARLMVKRSPELIVAADIEVNAS 180 Query: 181 NMNKPADGSRFEPIIGNPGDGASPSCAIVDEYHEHDSAALYETMLTGMGARRQPLMFIIT 240 NMNKP DGSRFEP+IGNPGDGASPSC+IVDEYHEHDSAALYETMLTGMGARRQPLMFIIT Sbjct: 181 NMNKPEDGSRFEPLIGNPGDGASPSCSIVDEYHEHDSAALYETMLTGMGARRQPLMFIIT 240 Query: 241 TAGANIEGPCFDKRRQVIEMLEGTVPDDELFGWIWTIDEGDDWTDPRVLAKANPNIGISV 300 TAGANIEGPCFDKRRQVIEMLEGTVPDDELFGWIWTIDEGDDWTDPRVLAKANPNIGISV Sbjct: 241 TAGANIEGPCFDKRRQVIEMLEGTVPDDELFGWIWTIDEGDDWTDPRVLAKANPNIGISV 300 Query: 301 YQDYLESQQQRAIKSARFTNTFKTKHLNVWTSAKAGYFNLEDWKSCEDRSLTLEQFEGQD 360 YQDYLESQQQRAIKSARFTNTFKTKHLNVWTSAKAGYFNLEDWKSCEDRSLTLEQFEGQD Sbjct: 301 YQDYLESQQQRAIKSARFTNTFKTKHLNVWTSAKAGYFNLEDWKSCEDRSLTLEQFEGQD 360 Query: 361 CVLALDMARKLDLNSMARLFWHDIDGRRHYFCVAPRFWVPEDTVRNTENRRMAERYQAWV 420 CVLALDMARKLDLNSMARLFWHDIDGRRHYFCVAPRFWVPE+TVRNTENRRMAERYQAWV Sbjct: 361 CVLALDMARKLDLNSMARLFWHDIDGRRHYFCVAPRFWVPEETVRNTENRRMAERYQAWV 420 Query: 421 NQGCLLETDGAEIDYRDILEEAKDANRLCPVQCTPLDPHGATNLSHQLADEGLTPVTIVQ 480 NQGCLLETDGAEIDYRDILEEAKDANRLCPVQCTPLDPHGATNLSHQL DEGLTPVTIVQ Sbjct: 421 NQGCLLETDGAEIDYRDILEEAKDANRLCPVQCTPLDPHGATNLSHQLEDEGLTPVTIVQ 480 Query: 481 NYTNMSDPMKELEAAITSGRFHHDGNPIMTWCVSNVIGKNLPGNDDVVRPIKQGNDNKID 540 NYTNMSDPMKELEAAIT+GRFHHDGNPIMTWCVSNVIGKNLPGNDDVVRPIKQGNDNKID Sbjct: 481 NYTNMSDPMKELEAAITAGRFHHDGNPIMTWCVSNVIGKNLPGNDDVVRPIKQGNDNKID 540 Query: 541 GAVALIMAVGRAMLADRVDS 560 GAVALIMA+GRAML + S Sbjct: 541 GAVALIMAIGRAMLENHAGS 560 >gi|12826|lcl|protein:vir:80335 Length: 571 # NCBI annotation: gp2, phage terminase, large subunit, putative # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1881 # MgeName: phi644-2 # Cross-refs: genbank:acc:YP_001111081;genbank:gi:134288625;genbank:Ge neID:4960582 Length = 571 Score = 1057 bits (2733), Expect = 0.0, Method: Compositional matrix adjust. Identities = 500/567 (88%), Positives = 530/567 (93%) Query: 4 NFPRVEQGLKFARDVVRGKRPACRYVQLACKRHLDDLAASRKKDFRWKFDPEAAERKLAL 63 +FP V + +FARDVVRGK PACR+V LAC+RHLDDLAAS+ F++KFDP AE+KL L Sbjct: 5 SFPLVARANQFARDVVRGKVPACRWVILACQRHLDDLAASKSAAFKYKFDPAKAEKKLRL 64 Query: 64 IELLPHTKGEWAFKGQLVTLEPWQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGKSVT 123 I+LLPHTKGEWA+K QLVTLEPWQ FGL TFGW+ K+TG RRFRESYWEVPRKNGKSV Sbjct: 65 IQLLPHTKGEWAYKRQLVTLEPWQLFGLACTFGWVRKKTGFRRFRESYWEVPRKNGKSVI 124 Query: 124 AAGVGIGMFVLDDEFGAEVYAGATTEKQAWEVFRPAQLMVKRSPMLIDSAGIEVNASNMN 183 AAGVGI MF DDEFGAEVY GATTE+QAWEVFRPA+LMVKRSP+LI+ GIEVNA +N Sbjct: 125 AAGVGIAMFTADDEFGAEVYCGATTERQAWEVFRPARLMVKRSPLLIEHLGIEVNAQALN 184 Query: 184 KPADGSRFEPIIGNPGDGASPSCAIVDEYHEHDSAALYETMLTGMGARRQPLMFIITTAG 243 +P DGSRFEPIIGNPGDGASPSCAI DEYHEHD+ A YETMLTGMGARRQPLMF+ITTAG Sbjct: 185 RPEDGSRFEPIIGNPGDGASPSCAIEDEYHEHDTNAQYETMLTGMGARRQPLMFVITTAG 244 Query: 244 ANIEGPCFDKRRQVIEMLEGTVPDDELFGWIWTIDEGDDWTDPRVLAKANPNIGISVYQD 303 ANIEGPC+DKRRQVIEMLEGTVPDDELFGWIWTIDE DDWTDPRVLAKANPNIGISVYQ+ Sbjct: 245 ANIEGPCYDKRRQVIEMLEGTVPDDELFGWIWTIDEDDDWTDPRVLAKANPNIGISVYQE 304 Query: 304 YLESQQQRAIKSARFTNTFKTKHLNVWTSAKAGYFNLEDWKSCEDRSLTLEQFEGQDCVL 363 YLESQQQRAIKSARFTNTFKTKHLNVWTSAKAGYFNLEDWK+CEDRSL+LEQFEGQDCVL Sbjct: 305 YLESQQQRAIKSARFTNTFKTKHLNVWTSAKAGYFNLEDWKACEDRSLSLEQFEGQDCVL 364 Query: 364 ALDMARKLDLNSMARLFWHDIDGRRHYFCVAPRFWVPEDTVRNTENRRMAERYQAWVNQG 423 ALDMARKLDLNSMARLFW DIDGRRHYFCVAPRFWVPEDTVRNTENRRMAERYQAWVN G Sbjct: 365 ALDMARKLDLNSMARLFWRDIDGRRHYFCVAPRFWVPEDTVRNTENRRMAERYQAWVNHG 424 Query: 424 CLLETDGAEIDYRDILEEAKDANRLCPVQCTPLDPHGATNLSHQLADEGLTPVTIVQNYT 483 L+ETDGAEIDYR+ILEEAK+ANR CPVQCTPLDPHGATNLSHQLADEGLTPVTIVQNYT Sbjct: 425 FLIETDGAEIDYREILEEAKEANRRCPVQCTPLDPHGATNLSHQLADEGLTPVTIVQNYT 484 Query: 484 NMSDPMKELEAAITSGRFHHDGNPIMTWCVSNVIGKNLPGNDDVVRPIKQGNDNKIDGAV 543 NMSDPMKELEAAITS RFHHDGNPIMTWC+SNVIGKNLPGNDDVVRP+KQGNDNKIDGAV Sbjct: 485 NMSDPMKELEAAITSRRFHHDGNPIMTWCISNVIGKNLPGNDDVVRPVKQGNDNKIDGAV 544 Query: 544 ALIMAVGRAMLADRVDSESIYDQGVGV 570 ALIMAVGRAMLADRVDSESIYDQGVGV Sbjct: 545 ALIMAVGRAMLADRVDSESIYDQGVGV 571 >gi|17922|lcl|protein:vir:4452 Length: 577 # NCBI annotation: Terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:96 # MgeName: ST64B # Cross-refs: genbank:acc:NP_700375;genbank:gi:23505447;genbank:GeneID :955654 Length = 577 Score = 833 bits (2151), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/570 (67%), Positives = 467/570 (81%), Gaps = 3/570 (0%) Query: 4 NFPRVEQGLKFARDVVRGKRPACRYVQLACKRHLDDLAASRKKDFRWKFDPEAAERKLAL 63 ++P V ++AR+VVRGK AC+YV AC+RH+DD+AA + K FR++FD + AE+ Sbjct: 5 SYPNVNAANQYARNVVRGKITACQYVIQACQRHIDDMAAEKSKRFRYRFDKDMAEKAAKF 64 Query: 64 IELLPHTKGEWAFKGQLVTLEPWQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGKSVT 123 I+LLPHTKGEWAFK L+TLEPWQ F + FGW+ K T RRFRE Y E+PRKNGKS Sbjct: 65 IQLLPHTKGEWAFKRMLITLEPWQLFIVCCAFGWVQKGTKLRRFREVYTEIPRKNGKSAI 124 Query: 124 AAGVGIGMFVLDDEFGAEVYAGATTEKQAWEVFRPAQLMVKRSPMLIDSAGIEVNASNMN 183 +AGV + F D+EFGAEVY+GATTEKQAWEVFRPA+LM KR+P+L+++ GIEVNASN+N Sbjct: 125 SAGVALYCFTCDNEFGAEVYSGATTEKQAWEVFRPARLMCKRTPLLVEAFGIEVNASNLN 184 Query: 184 KPADGSRFEPIIGNPGDGASPSCAIVDEYHEHDSAALYETMLTGMGARRQPLMFIITTAG 243 +P DG+RFEP+IGNPGDGASP CAIVDEYHEH + ALY TMLTGMGARRQPLM+ ITTAG Sbjct: 185 RPEDGARFEPLIGNPGDGASPHCAIVDEYHEHPTDALYTTMLTGMGARRQPLMWAITTAG 244 Query: 244 ANIEGPCFDKRRQVIEMLEGTVPDDELFGWIWTIDEGDDWTDPRVLAKANPNIGISVYQD 303 NIEGPC+DKRR+VIEML G+VP++ELFG I+T+DEGDDWTDP+VL KANPNIG+SVY+D Sbjct: 245 YNIEGPCYDKRREVIEMLNGSVPNNELFGVIYTVDEGDDWTDPKVLEKANPNIGVSVYRD 304 Query: 304 YLESQQQRAIKSARFTNTFKTKHLNVWTSAKAGYFNLEDWKSCEDRSLTLEQFEGQDCVL 363 +L SQQQRAI +AR FKTKHLNVW +A+ +FNL W++CED++LTLE FEGQ CVL Sbjct: 305 FLLSQQQRAINNARHAGVFKTKHLNVWVAARTAFFNLVSWQNCEDKTLTLELFEGQPCVL 364 Query: 364 ALDMARKLDLNSMARLFWHDIDGRRHYFCVAPRFWVPEDTVRNT---ENRRMAERYQAWV 420 A D+ARKLD+NSMARLF +IDG+ H++ VAPRFWVP DTV + E+RR AER+Q WV Sbjct: 365 AFDLARKLDMNSMARLFTREIDGKTHFYSVAPRFWVPYDTVYSVEKNEDRRTAERFQKWV 424 Query: 421 NQGCLLETDGAEIDYRDILEEAKDANRLCPVQCTPLDPHGATNLSHQLADEGLTPVTIVQ 480 G L TDGAE+DYR ILEEAK AN+L PV +P+DP GAT LSH LADE L PVTI+Q Sbjct: 425 EMGFLTVTDGAEVDYRYILEEAKAANKLNPVSESPIDPFGATGLSHDLADENLNPVTIIQ 484 Query: 481 NYTNMSDPMKELEAAITSGRFHHDGNPIMTWCVSNVIGKNLPGNDDVVRPIKQGNDNKID 540 NYTNMSDPMKELEAAI SGRFHHDGNPIMTWC+ NV+GK +PGNDDVV+PIK+ +NKID Sbjct: 485 NYTNMSDPMKELEAAIESGRFHHDGNPIMTWCIGNVVGKTIPGNDDVVKPIKEQAENKID 544 Query: 541 GAVALIMAVGRAMLADRVDSESIYDQGVGV 570 GAVALIMAVGRAML ++ D+ S + + G+ Sbjct: 545 GAVALIMAVGRAMLYEKEDTLSDHIESYGI 574 >gi|19315|lcl|protein:vir:4508 Length: 577 # NCBI annotation: large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:97 # MgeName: V # Cross-refs: genbank:acc:NP_599034;genbank:gi:19548992;genbank:GeneID :935222 Length = 577 Score = 830 bits (2144), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/556 (68%), Positives = 458/556 (82%), Gaps = 3/556 (0%) Query: 4 NFPRVEQGLKFARDVVRGKRPACRYVQLACKRHLDDLAASRKKDFRWKFDPEAAERKLAL 63 ++P V ++ARDVVRGK AC++V AC+RHLDDL A + K FR++FD + AER Sbjct: 5 SYPNVNAANQYARDVVRGKIVACQFVIQACQRHLDDLMAEKSKSFRYRFDKDLAERVAKF 64 Query: 64 IELLPHTKGEWAFKGQLVTLEPWQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGKSVT 123 I+LLPHTKGEWAFK +TLEPWQ F + FGW+NK + RRFRE Y E+PRKNGKS Sbjct: 65 IQLLPHTKGEWAFKRMPITLEPWQLFVICCAFGWVNKGSRLRRFREVYTEIPRKNGKSAI 124 Query: 124 AAGVGIGMFVLDDEFGAEVYAGATTEKQAWEVFRPAQLMVKRSPMLIDSAGIEVNASNMN 183 +AGV + F D+EFGAEVY+GATTEKQAWEVFRPA+LM KR+PML ++ GIEVNASNMN Sbjct: 125 SAGVALYCFACDNEFGAEVYSGATTEKQAWEVFRPARLMCKRTPMLTEAFGIEVNASNMN 184 Query: 184 KPADGSRFEPIIGNPGDGASPSCAIVDEYHEHDSAALYETMLTGMGARRQPLMFIITTAG 243 +P DG+RFEP+IGNPGDG+SP CA+VDEYHEH + ALY TMLTGMGARRQPLM+ ITTAG Sbjct: 185 RPEDGARFEPLIGNPGDGSSPHCAVVDEYHEHATDALYTTMLTGMGARRQPLMWAITTAG 244 Query: 244 ANIEGPCFDKRRQVIEMLEGTVPDDELFGWIWTIDEGDDWTDPRVLAKANPNIGISVYQD 303 NIEGPC+DKRR+VIEML G+VP+DELFG I+T+DEGDDWTDP+VL KANPNIG+SVY++ Sbjct: 245 YNIEGPCYDKRREVIEMLNGSVPNDELFGIIYTVDEGDDWTDPQVLEKANPNIGVSVYRE 304 Query: 304 YLESQQQRAIKSARFTNTFKTKHLNVWTSAKAGYFNLEDWKSCEDRSLTLEQFEGQDCVL 363 +L SQQQRA +AR N FKTKHLN+W SA++ YFNL W+SCED+SLTLEQFEGQ C+L Sbjct: 305 FLLSQQQRAKNNARLANVFKTKHLNIWVSARSAYFNLVSWQSCEDKSLTLEQFEGQPCIL 364 Query: 364 ALDMARKLDLNSMARLFWHDIDGRRHYFCVAPRFWVPEDTVRNT---ENRRMAERYQAWV 420 A D+ARKLD+NSMARL+ +IDG+ HY+ VAPRFWVP DTV + E+RR AER+Q WV Sbjct: 365 AFDLARKLDMNSMARLYTREIDGKTHYYSVAPRFWVPYDTVYSVEKNEDRRTAERFQKWV 424 Query: 421 NQGCLLETDGAEIDYRDILEEAKDANRLCPVQCTPLDPHGATNLSHQLADEGLTPVTIVQ 480 G L TDGAE+DYR ILEEAK AN++ PV +P+DP GAT LSH LADE L PVTIVQ Sbjct: 425 EMGVLTVTDGAEVDYRYILEEAKAANKISPVSESPIDPFGATGLSHDLADEDLNPVTIVQ 484 Query: 481 NYTNMSDPMKELEAAITSGRFHHDGNPIMTWCVSNVIGKNLPGNDDVVRPIKQGNDNKID 540 N+ NMSDPMKELEAAI SGRFHHDGNPIMTWC+ NV+GKN+PGNDD+V+P+K+ +NKID Sbjct: 485 NFANMSDPMKELEAAIESGRFHHDGNPIMTWCIGNVVGKNMPGNDDLVKPVKEQAENKID 544 Query: 541 GAVALIMAVGRAMLAD 556 GAVALIM +GRAML + Sbjct: 545 GAVALIMTIGRAMLKE 560 >gi|593|lcl|protein:vir:481 Length: 570 # NCBI annotation: putative terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:11 # MgeName: P27 # Cross-refs: genbank:acc:NP_543088;swissprot:trembl:q8w631;genbank:gi :18249900;uniprot:Q8W631;genbank:GeneID:929687 Length = 570 Score = 823 bits (2125), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/560 (68%), Positives = 464/560 (82%), Gaps = 2/560 (0%) Query: 13 KFARDVVRGKRPACRYVQLACKRHLDDLAASRKKDFRWKFDPEAAERKLALIELLPHTKG 72 ++ARDVVRGK CRYV LAC+RHLDDL S KK++ +KFD + AER I+LLPHTKG Sbjct: 8 QYARDVVRGKIQVCRYVVLACQRHLDDLENSAKKNYPFKFDKDKAERVAKFIQLLPHTKG 67 Query: 73 EWAFKGQLVTLEPWQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGKSVTAAGVGIGMF 132 EWAFK +TLEPWQ F + FGW+ K++G RRFRE+Y E+PRKNGKS +AGVG+ MF Sbjct: 68 EWAFKRMPITLEPWQLFCICVVFGWVRKKSGLRRFREAYNEIPRKNGKSAMSAGVGLYMF 127 Query: 133 VLDDEFGAEVYAGATTEKQAWEVFRPAQLMVKRSPMLIDSAGIEVNASNMNKPADGSRFE 192 DDEFGAEVY+GATTEKQAWEVFRPA+LM +R+ L ++ GIEV+A +M++P DG+RFE Sbjct: 128 ACDDEFGAEVYSGATTEKQAWEVFRPARLMAQRTEPLREAFGIEVHAQSMSRPEDGARFE 187 Query: 193 PIIGNPGDGASPSCAIVDEYHEHDSAALYETMLTGMGARRQPLMFIITTAGANIEGPCFD 252 P+IG+PGDGASPSCA++DEYHEH + ALY+TM TGMGARRQPL+F ITTAG NIEGPC+D Sbjct: 188 PLIGDPGDGASPSCALIDEYHEHQTDALYQTMQTGMGARRQPLIFGITTAGYNIEGPCYD 247 Query: 253 KRRQVIEMLEGTVPDDELFGWIWTIDEGDDWTDPRVLAKANPNIGISVYQDYLESQQQRA 312 KRR+VIEMLEG VP+DELFG I+TID+GDDWTDP VL KANPN+GISVY DYL SQQ+ A Sbjct: 248 KRREVIEMLEGIVPNDELFGIIYTIDDGDDWTDPAVLRKANPNMGISVYSDYLLSQQRAA 307 Query: 313 IKSARFTNTFKTKHLNVWTSAKAGYFNLEDWKSCEDRSLTLEQFEGQDCVLALDMARKLD 372 I + R FKTKHLN+W +AK +FNL +W+ CEDRSLTLE+FEG C+LA D+ARKLD Sbjct: 308 INNPRKVGVFKTKHLNIWVAAKDAFFNLVNWQKCEDRSLTLERFEGHTCILAFDLARKLD 367 Query: 373 LNSMARLFWHDIDGRRHYFCVAPRFWVPEDTVRNTE--NRRMAERYQAWVNQGCLLETDG 430 LN+M RLF +IDG+ HY+CVAP+F+VP DT+ + + + R AERYQ WV G + TDG Sbjct: 368 LNAMVRLFTREIDGKTHYYCVAPKFFVPYDTIYSADVTDSRTAERYQKWVEGGFITVTDG 427 Query: 431 AEIDYRDILEEAKDANRLCPVQCTPLDPHGATNLSHQLADEGLTPVTIVQNYTNMSDPMK 490 AEIDYR+ILE AK+ANRL V+ +P+DPHGATNLSH LADE L P+TI+QNYTNMSDPMK Sbjct: 428 AEIDYREILESAKEANRLNAVEESPIDPHGATNLSHHLADENLNPITIIQNYTNMSDPMK 487 Query: 491 ELEAAITSGRFHHDGNPIMTWCVSNVIGKNLPGNDDVVRPIKQGNDNKIDGAVALIMAVG 550 ELEAAI +GRFHHDGNP+MTWC+SNVIGK++PG+DDVVRPIKQGN+NKIDGAVALIMA+G Sbjct: 488 ELEAAIEAGRFHHDGNPVMTWCISNVIGKHIPGDDDVVRPIKQGNENKIDGAVALIMAIG 547 Query: 551 RAMLADRVDSESIYDQGVGV 570 R ML ++ D+ S + + G+ Sbjct: 548 RCMLFEKEDTLSDHIESYGI 567 >gi|1289|lcl|protein:vir:105086 Length: 569 # NCBI annotation: putative large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1465 # MgeName: phiKO2 # Cross-refs: genbank:acc:YP_006582;genbank:gi:46402088;genbank:GeneID :2777952 Length = 569 Score = 605 bits (1561), Expect = e-175, Method: Compositional matrix adjust. Identities = 295/564 (52%), Positives = 379/564 (67%), Gaps = 5/564 (0%) Query: 5 FPRVEQGLKFARDVVRGKRPACRYVQLACKRHLDDLAASRKKDFRWKFDPEAAERKLALI 64 +P V K+ARD+V GK ACR+++LAC+RH DDL S K++ +KFD + AER + Sbjct: 4 YPNVSVANKYARDIVDGKIVACRFIRLACQRHFDDLKKSLDKNYPYKFDRDLAERACKFV 63 Query: 65 ELLPHTKGEWAFKGQLVTLEPWQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGKSVTA 124 +LLPH+ GE A GQ + LEPWQ F + FGW+ K+ KRRFRE+Y V RKNGKS A Sbjct: 64 QLLPHSSGELA--GQKLKLEPWQSFIFCSIFGWVTKKDKKRRFREAYIRVARKNGKSFFA 121 Query: 125 AGVGIGMFVLDDEFGAEVYAGATTEKQAWEVFRPAQLMVKRSPMLIDSAGIEVNASNMNK 184 AGVGI F D E AEVY GATT QA +VF PA+ M R P L I V ++ + Sbjct: 122 AGVGIYTFCADGENSAEVYCGATTMAQAKKVFTPARQMASRLPALRSRFDISVWTDSLTR 181 Query: 185 PADGSRFEPIIGNPGDGASPSCAIVDEYHEHDSAALYETMLTGMGARRQPLMFIITTAGA 244 P DGS F P+ G PGDG SP CAI+DEYHEHD+ +YE M GMGAR QPL IITTAG+ Sbjct: 182 P-DGSVFAPMAGKPGDGDSPHCAIIDEYHEHDTDHMYEAMTMGMGARSQPLTLIITTAGS 240 Query: 245 NIEGPCFDKRRQVIEMLEGTVPDDELFGWIWTIDEGDDWTDPRVLAKANPNIGISVYQDY 304 ++E PC+DK ++V E +EG ++ LFG I+ +D GDDWTDP+ L KANPN+ +SV Sbjct: 241 SLESPCYDKDKEVKEAIEGITCNERLFGMIYELDVGDDWTDPKNLIKANPNLNVSVKYSD 300 Query: 305 LESQQQRAIKSARFTNTFKTKHLNVWTSAKAGYFNLEDWKSCEDRSLTLEQFEGQDCVLA 364 L + A + R N FKTK LN+W S K+ ++N+E WK+ ED++L LE F C + Sbjct: 301 LVELLEVAKQVPRKVNAFKTKRLNIWVSGKSAFYNMEQWKAAEDKNLKLEDFANDTCNVG 360 Query: 365 LDMARKLDLNSMARLFWHDIDGRRHYFCVAPRFWVPEDTVRNTENR--RMAERYQAWVNQ 422 LD+A+KLD+N+ RLF +I+G+RHY+C+ P+FWVPEDT+ T+ + + A+RYQ + Sbjct: 361 LDLAKKLDMNAGIRLFTREIEGKRHYYCIKPKFWVPEDTIHTTDPKLLKTADRYQKFYEM 420 Query: 423 GCLLETDGAEIDYRDILEEAKDANRLCPVQCTPLDPHGATNLSHQLADEGLTPVTIVQNY 482 G L TDGAE DYR+IL D + +DP GAT L HQL D G T V I Q+Y Sbjct: 421 GALEATDGAEADYREILASILDMQGENRIDEIDIDPAGATALRHQLEDYGFTVVDIRQDY 480 Query: 483 TNMSDPMKELEAAITSGRFHHDGNPIMTWCVSNVIGKNLPGNDDVVRPIKQGNDNKIDGA 542 TNMS MKELEAA+ GRFHHDGNPI+TWC+SNVIGK +PG+DD+VRP K N +KIDGA Sbjct: 481 TNMSPAMKELEAALAGGRFHHDGNPILTWCISNVIGKFIPGSDDLVRPTKGDNQSKIDGA 540 Query: 543 VALIMAVGRAMLADRVDSESIYDQ 566 AL A+ RAML + S+YD+ Sbjct: 541 TALFNAMTRAMLNESSGGTSVYDE 564 >gi|986|lcl|protein:vir:5736 Length: 577 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:122 # MgeName: PY54 # Cross-refs: genbank:acc:NP_892047;genbank:gi:33770510;interpro:IPR00 5021;uniprot:Q7Y413;genbank:GeneID:1732947 Length = 577 Score = 587 bits (1512), Expect = e-169, Method: Compositional matrix adjust. Identities = 292/573 (50%), Positives = 383/573 (66%), Gaps = 13/573 (2%) Query: 4 NFPRVEQGLKFARDVVRGKRPACRYVQLACKRHLDDLAAS-RKKDFRWKFDPEAAERKLA 62 ++P V ++ARD++ GK A +Y++LAC+RHLDDL S K++ ++FD + AER Sbjct: 3 SYPNVNAAQQYARDILSGKILAGKYIKLACQRHLDDLKNSVNDKNYPYRFDRDLAERACC 62 Query: 63 LIELLPHTKGEWAFKGQLVTLEPWQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGKSV 122 ++LLPH+ G+ KGQ + EPWQ F + FGW+ K+ KRRF+E+Y V RKNGKS Sbjct: 63 FVQLLPHSSGD--LKGQKLKAEPWQLFIFSSIFGWVTKKGKKRRFKETYIRVGRKNGKSF 120 Query: 123 TAAGVGIGMFVLDDEFGAEVYAGATTEKQAWEVFRPAQLMVKRSPMLIDSAGIEVNASNM 182 AAG+G+ MF D E AEVY GAT QA +VF PA M K P L + V A + Sbjct: 121 FAAGIGMYMFCADGENAAEVYCGATKMAQAKKVFTPASQMAKLLPDLRSRFNVSVWAEKL 180 Query: 183 NKPADGSRFEPIIGNPGDGASPSCAIVDEYHEHDSAALYETMLTGMGARRQPLMFIITTA 242 + DGS F P++GNPGDG SPSCAI+DEYHEH + LY TM TGMGAR QPL IITTA Sbjct: 181 TR-EDGSVFAPVVGNPGDGDSPSCAIIDEYHEHPTDILYSTMTTGMGARSQPLTLIITTA 239 Query: 243 GANIEGPCFDKRRQVIEMLEGTVPDDELFGWIWTIDEGDDWTDPRVLAKANPNIGISVYQ 302 G +IE PC+DK +V + L+ +P++ LFG I+ +D D+W DP L KANPN+G+SV+ Sbjct: 240 GKDIESPCYDKDNEVKQCLDKMLPNERLFGMIYELDALDNWQDPCNLIKANPNLGVSVFY 299 Query: 303 DYLESQQQRAIKSARFTNTFKTKHLNVWTSAKAGYFNLEDWKSCEDRSLTLEQFEGQDCV 362 + L + A R TN KTKHLN+W S K +FN++ W ED++L L F+G++ Sbjct: 300 EDLVEKLHLAKTVPRMTNDIKTKHLNMWVSGKTAFFNMDHWAKAEDKNLKLSNFKGEESH 359 Query: 363 LALDMARKLDLNSMARLFWHDIDGRRHYFCVAPRFWVPEDTVRNTENR--RMAERYQAWV 420 L LD+A KLDLN+ +F +I+G+RHY+CV +FWVPEDTV + + + + A+RYQ WV Sbjct: 360 LGLDLAAKLDLNAGVPVFTREIEGKRHYYCVGSKFWVPEDTVHSIDPKIAKTAKRYQKWV 419 Query: 421 NQ----GCLL-ETDGAEIDYRDILEEAKDANRLCPVQCT--PLDPHGATNLSHQLADEGL 473 N G LL +TDGAE DYR+IL D V+ P+DP GAT LSH+LAD G Sbjct: 420 NMQWAGGSLLNDTDGAEADYREILASVIDMTERDGVRIASIPIDPTGATALSHELADNGF 479 Query: 474 TPVTIVQNYTNMSDPMKELEAAITSGRFHHDGNPIMTWCVSNVIGKNLPGNDDVVRPIKQ 533 P+ I Q++TNMS PMKELEAA+ GRFHHDGNPI+ WC+SNV+G +PG+DD VRP K Sbjct: 480 EPINIRQDFTNMSPPMKELEAALAGGRFHHDGNPILAWCISNVLGTFVPGSDDRVRPTKG 539 Query: 534 GNDNKIDGAVALIMAVGRAMLADRVDSESIYDQ 566 +KIDGA AL+MA+GRAML + S SIYD Sbjct: 540 DKQSKIDGATALLMAIGRAMLHGQDSSHSIYDN 572 >gi|17978|lcl|protein:vir:4335 Length: 563 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:93 # MgeName: D3 # Cross-refs: genbank:acc:NP_061498;genbank:gi:9635588;genbank:GeneID: 1262853 Length = 563 Score = 454 bits (1168), Expect = e-129, Method: Compositional matrix adjust. Identities = 251/552 (45%), Positives = 339/552 (61%), Gaps = 24/552 (4%) Query: 13 KFARDVVRGKRPACRYVQLACKRHLDDLAASRKKDFRWKFDPEAAERKLALIELLPHTKG 72 ++A DVV G ACRYV LAC+R L+DL D+ + FD A+R + ++L+PHTKG Sbjct: 9 QYASDVVGGAIVACRYVALACQRFLNDLDRQSDDDWPYVFDEAKADRAVKFMQLMPHTKG 68 Query: 73 EWAFKGQLVTLEPWQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGKSVTAAGVGIGMF 132 +W+ + EPWQ F FGW+ + TGKRRFRE+Y E+PRKNGKS A GI +F Sbjct: 69 KWSASKSKLVFEPWQVFIEANIFGWVKRDTGKRRFREAYEEIPRKNGKSARLAARGIYLF 128 Query: 133 VLDDEFGAEVYAGATTEKQAWEVFRPAQLMVKRSPMLIDSAGIEVNASNMNKPA-----D 187 D E GAEVY+GATTEKQA+EVFRPA +M + L + GIE++ + N D Sbjct: 129 AADGESGAEVYSGATTEKQAFEVFRPAWMMAHKLENLRNRFGIELSGNQKNPGPMFVMED 188 Query: 188 GSRFEPIIGNPGDGASPSCAIVDEYHEHDSAALYETMLTGMGARRQPLMFIITTAGANIE 247 S+FE +IGNPGDGASP A+VDEYHEHD+ AL +TM TGMGAR QPL+ IITTAG+N+ Sbjct: 189 MSKFETVIGNPGDGASPHAALVDEYHEHDTDALVDTMQTGMGAREQPLLSIITTAGSNLG 248 Query: 248 GPCFDKRRQVIEMLEGTVPDDELFGWIWTIDEGDDWTDPRVLAKANPNIGISVYQDYLES 307 GPC +KRR VI +LEG D+ +FG I+TIDE D W DP L KANPN G+SV+ D+L + Sbjct: 249 GPCHEKRRDVIRILEGQTIDETIFGIIYTIDEDDPWDDPASLIKANPNYGVSVFPDFLLA 308 Query: 308 QQQRAIKSARFTNTFKTKHLNVWTSAKAGYFNLEDWKSCEDRSLTLEQFEGQDCVLALDM 367 Q Q+A +SA N F+TKHLN W A+ + N+ W+ + R T+ G C +ALD+ Sbjct: 309 QLQQAKRSASKQNAFRTKHLNQWVGARTVWMNMLAWQR-QKRDFTIADMAGCRCWMALDL 367 Query: 368 ARKLDLNSMARLFWHDIDGRRHYFCVAPRFWVPEDTVRNTENRRMAERYQAWVNQGCLLE 427 A K D+ ++ LF + ++C+ PRF+ E+YQ + +G L+ Sbjct: 368 ASKKDVAALVMLF----EKAGQFYCI-PRFYA------PEAAAEENEKYQNFALEGHLVL 416 Query: 428 TDGAEIDYRDILEEAKDANRLCPVQCTPLDPHGATNLSHQLADEGLTPVTIVQNYTNMSD 487 T G+ DY I + D + +Q D A L +L++ + V Q NMSD Sbjct: 417 TPGSMTDYAFIEADILDLAKQIDLQDAAFDDWQANYLITRLSNTSIPVVDFNQTVKNMSD 476 Query: 488 PMKELEAAITSGRFHHDGNPIMTWCVSNVIGKNLPGNDDVVRPIKQGNDN----KIDGAV 543 PMKE+EA + + HDGNP+MTW + NV K + +++ P K+ NDN KIDG V Sbjct: 477 PMKEVEARVIARTLWHDGNPVMTWMMGNVAAK-IDAKENIY-PRKE-NDNDPNCKIDGPV 533 Query: 544 ALIMAVGRAMLA 555 LIMA+GRA++A Sbjct: 534 TLIMAMGRALVA 545 >gi|13199|lcl|protein:vir:81178 Length: 567 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1892 # MgeName: Geobacillus virus E2 # Cross-refs: genbank:acc:YP_001285808;genbank:gi:148747729;genbank:Ge neID:5247221 Length = 567 Score = 272 bits (695), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 183/573 (31%), Positives = 301/573 (52%), Gaps = 38/573 (6%) Query: 8 VEQGLKFARDVVRGKRPACRYVQLACKRHLDDLAASRKKDFRWKFDPEAAERKLALIELL 67 +E+ + +A+DVV G+ AC+ + AC+R L+D+ + DF + FD E R + Sbjct: 6 LERIVHYAQDVVDGRTIACQKHKWACERFLNDIERITEDDFPYYFDGEELYRFYRWARMF 65 Query: 68 PHTKGEWAFKGQLVTLEPWQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGKSVTAAGV 127 H KG A GQ + L +Q F + FGW K G RRFR++Y ++ RKN KS A + Sbjct: 66 KHNKGILA--GQPIELTDFQLFIVGNIFGWKRKENGLRRFRKAYIQLARKNAKSQLLALI 123 Query: 128 GIGMFVLDDEFGAEVYAGATTEKQAWEVFRPAQLMVKRSPML----IDSAGIEVNASNMN 183 L E +EVY +Q+ V+ V+ +L DS G + Sbjct: 124 ASYECFLSPE-QSEVYIAGWGREQSSIVYNEVLAQVQACDLLKGKYTDSYG------RIR 176 Query: 184 KPADGSRFEPIIG---NPGDGASPSCAIVDEYHEHDSAALYETMLTGMGARRQPLMFIIT 240 GS +P+ GDG +PS A++DEYH H+++ +Y+ +++GM AR+ PL+ IIT Sbjct: 177 HKKSGSIIQPLSKEARKTGDGKNPSLAVIDEYHTHETSEIYDVLVSGMVARQNPLIVIIT 236 Query: 241 TAGANIEGPCFDKRRQVIEMLEGTVP--DDELFGWIWTIDEGDDWTDPRVLAKANPNIGI 298 TAG N+ PC+ + + V ++++ P ++E F I +D+ DD D R KANP + Sbjct: 237 TAGFNLASPCYTEYQYVSKVIDPGSPIENEEYFVMICELDKDDDIKDERNWVKANP--IV 294 Query: 299 SVYQD---YLESQQQRAIKSARFTNTFKTKHLNVWTSAK-AGYFNLEDWKSCEDRSLTLE 354 + Y++ +L S+ Q A+ +F TK++N+W K GY L+ W++C + Sbjct: 295 ATYEEGMNFLRSELQTALDVPEKMRSFLTKNMNIWVDQKDNGYLPLDKWRACAIKEQI-- 352 Query: 355 QFEGQDCVLALDMARKLDLNSMARLFWHDIDGRRHYFCVAPRFWVPEDTVRNTENRRMAE 414 + +DC + +D++ ++DL S++ + D DGR F V ++PEDT+ E RR + Sbjct: 353 DLDVRDCYVGIDLSMRIDLTSVSGIVPMD-DGR---FYVWSHSFIPEDTL--AEKRRTDK 406 Query: 415 R-YQAWVNQGCLLETDGAEIDYRDILEEAKD--ANRLCPVQCTPLDPHGATNLSHQLADE 471 Y WV QG + T GA +DY+ I K +++ ++ DP+ AT+ +H++ E Sbjct: 407 VPYDLWVKQGWITVTPGAVVDYQFIQAYIKRLAEDKMWNIKEICYDPYNATHFAHEMEAE 466 Query: 472 GLTPVTIVQNYTNMSDPMKELEAAITSGRFHHDGNPIMTWCVSNVIGKNLPGNDDVVRPI 531 G V I Q + +S+P K + SG+ HD NP++ W + N + K N++++ Sbjct: 467 GYVMVEIRQGFRTLSEPTKRFRELVLSGKILHDDNPVLNWAIGNAVVKQ-DHNENIMLD- 524 Query: 532 KQGNDNKIDGAVALIMAVGRAML-ADRVDSESI 563 K + +ID ALI A+ RA+L +D VD + Sbjct: 525 KDKSTGRIDPIAALINAMVRAILKSDEVDINEV 557 >gi|8690|lcl|protein:vir:102145 Length: 581 # NCBI annotation: phage terminase, large subunit, putative # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1641 # MgeName: phiSM101 # Cross-refs: genbank:acc:YP_699944;genbank:gi:110804033;genbank:GeneI D:4206689 Length = 581 Score = 251 bits (641), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 177/575 (30%), Positives = 291/575 (50%), Gaps = 43/575 (7%) Query: 13 KFARDVVRGKRPACRYVQLACKRHLDDLAASRKKDFRWKFDPEAAERKLALIELLPHTKG 72 ++A DV+ GK A RYV+LAC+RH+DDL S+ ++++FD E A + E L T G Sbjct: 7 RYAIDVLEGKEVAGRYVKLACQRHIDDLERSKLAPYKYEFDLEKALESIDFFEDLRFTDG 66 Query: 73 EWAFKGQLVTLEPWQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGKSVTAAGVGIGMF 132 E A GQ V L +Q F + + FGW+ K TG RRF++SY ++ RKN KS+ +G+GI + Sbjct: 67 EIA--GQQVKLFGFQDFIVGSIFGWVCKGTGYRRFKKSYVQLARKNAKSLLNSGIGIKLA 124 Query: 133 VLDDEFGAEVYAGATTEKQAWEVFRPAQLMVKRSPMLIDSAGIEVNASNMNKPADGSRFE 192 D A+VY AT KQA V++ A+ ++ P L + I+ + + + +G Sbjct: 125 AFDKYPNAQVYCTATKMKQARIVWKQARKFIEIEPDLREIFKIKDHDAIIESLINGGEIM 184 Query: 193 PIIGNPG--DGASPSCAIVDEYHEHDSAALYETMLTGMGARRQPLMFIITTAGANIEGPC 250 + + G DG P I+DEYH H + + + + G + + L+ IITTAG N+ GPC Sbjct: 185 ALGRDTGTIDGFDPHGGIIDEYHSHKTNQMVKLLEDGSVNQAESLISIITTAGFNLNGPC 244 Query: 251 FDKRRQVIEMLEGTVPDDELFGWIWTIDEGDDWTDPRVLAKANPNI-----GISVYQDYL 305 + + +LEG V +DE F +I +D DD DP KANP + G+ + + Sbjct: 245 YKEWEYCKNVLEGIVNNDEYFIYIAQMDVEDDIWDPNNWLKANPLVAKLPKGLENLKRFA 304 Query: 306 ESQQQRAIKSARFTNTFKTKHLNVWTS-AKAGYFNLEDWKSCEDRSLTLEQFEGQDCVLA 364 E +Q+ + F TK LN+W + Y WK + LTLE F+G+ C Sbjct: 305 EESKQKGGDDLK---NFLTKSLNIWYEFSNDQYIGPSVWKVGASK-LTLENFKGKTCYAG 360 Query: 365 LDMARKLDLNSMARLFWHDIDGR-----RHYFCVAPRFWVPEDTVRNTENRRMAER---- 415 LD++ DL S+A +F ++ + R YF + F +P+ RR+AE Sbjct: 361 LDLSSGGDLTSLALIFPYEFEKENGEKVRKYFIHSHSF-IPK--------RRVAEHIQSD 411 Query: 416 ---YQAWVNQGCLLETD---GAEIDYRDILEEAKDANRLCPVQCTPL--DPHGATNLSHQ 467 Y W+ G L T+ G + DY+ I++ +D ++ L DPH A Sbjct: 412 DVPYDVWIENGLLTVTETLGGIKTDYKYIIKYLRDLIEEFQLKIIQLGYDPHNADTFLQD 471 Query: 468 LADEGLTPVTIVQNYTNMSDPMKELEAAITSGRF-HHDGNPIMTWCVSNVIGKNLPGNDD 526 L + G V I Q+ ++DP ++ + +G +++ N +++W V N K + ++ Sbjct: 472 LEELGFDCVEIFQSCKWLNDPTEDFKLECEAGNIEYNEENELLSWSVVN--AKLVSNSNG 529 Query: 527 VVRPIKQGNDNKIDGAVALIMAVGRAMLADRVDSE 561 ++ K + +ID A+I A A +++++++ Sbjct: 530 EIKIDKNLQEKRIDPVDAVIDAYKLAFKSEKLNTK 564 >gi|17128|lcl|protein:vir:1379 Length: 581 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612831;genbank:gi:20065965;genbank:GeneID :935781 Length = 581 Score = 222 bits (565), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 163/563 (28%), Positives = 272/563 (48%), Gaps = 30/563 (5%) Query: 8 VEQGLKFARDVVRGKRPACRYVQLACKRHLDDLAASRKKDFRWKFDPEAAERKLALIELL 67 +E+ + ++ ++ GK AC+ + ACKR L+DL DF + +D E A+R + Sbjct: 6 LEELIDYSNSILDGKINACKRHKQACKRFLNDLERMESDDFEYYWDEEEAQRIVKWYGHC 65 Query: 68 PHTKGEWAFKGQLVTLEPWQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGKSVTAAGV 127 H+KG +G+ + L W KF + W +K T RRFR ++ +V RKN KS AG+ Sbjct: 66 RHSKG--VLEGKPIILNSWAKFVVCNIEAWKHKDTNYRRFRFAFIQVARKNQKSQLEAGM 123 Query: 128 GIGMFVLDDEFGAEVYAGATTEKQAWEVFRPAQLMVKRSPMLIDSAGIEVNASNMNKPAD 187 AEVY QA VF +LM + P+ + + + Sbjct: 124 AGYEIGAKGYNAAEVYTLGVERDQAKIVFEEWELMASK-PLKKRFKFTQKVIKHKKSNSF 182 Query: 188 GSRFEPIIGNPGDGASPSCAIVDEYHEHDSAALYETMLTGMGARRQPLMFIITTAGANI- 246 G GDG +P A++DEYH H ++ +Y+ M +GM AR +PL+ IITTAG + Sbjct: 183 IKHLSKKAGKTGDGKNPQMAVIDEYHAHPNSKMYDVMKSGMMARTEPLLVIITTAGEDYE 242 Query: 247 EGPCFDKRRQVIEMLEGTVPDDELFGWIWTIDEGDDWTDPRVLAKANPNIGISVYQDYLE 306 E C+ + +L+GT +++ F I +++ DD D + KANP + Y++ +E Sbjct: 243 ETACYYEYLDCCSILDGTFENEKYFVMICELEDEDDPFDEKAWIKANP--VLCTYEEGIE 300 Query: 307 SQQQRAIKSARFTN-----TFKTKHLNVWTSA-KAGYFNLEDWKSCEDRSLTLEQFEGQD 360 S +Q A + +N F TK+ N++ +A + Y ++E WK+C++ ++TLE+F G D Sbjct: 301 SMRQNANLAKNTSNEEKRIEFLTKNCNIYVAAGEKKYVDVEFWKACKE-NITLEKFRGHD 359 Query: 361 CVLALDMARKLDLNSMARLFWHDIDGRRHYFCVAPRFWVPEDTVR---NTENRRMAERYQ 417 C + +D+++ DL S+A F + +G R Y F +P + V+ T+N Y Sbjct: 360 CYIGMDLSKSGDLTSIAFEFPYLDEGIRKYALFGKSF-IPAEVVKEKMKTDNV----PYN 414 Query: 418 AWVN--QGCLLETDGAE---IDYRDILEEAKDANRLCPVQCTPL--DPHGATNLSHQLAD 470 W + +G L++T+ E +D IL + + + + DPHGA L +L Sbjct: 415 IWSSKEKGWLIKTEANEGQIVDLWAILNTIESIVKEYELNVIEVSYDPHGAAMLVSELER 474 Query: 471 EGLTPVTIVQNYTNMSDPMKELEAAITSGRFHHDGNPIMTWCVSNVIGKNLPGNDDVVRP 530 V Q+ +++ + + HD N +MTWCV N + + ++ Sbjct: 475 RDYNCVECGQSCAKLNEATVNFRDLMKIKQIVHDENNLMTWCVQN--AEKDTNSFGEIKI 532 Query: 531 IKQGNDNKIDGAVALIMAVGRAM 553 K+ +ID + I A RAM Sbjct: 533 SKKSRFKRIDPLASCIFAHNRAM 555 >gi|2959|lcl|protein:vir:102079 Length: 565 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1503 # MgeName: Fah # Cross-refs: genbank:acc:YP_512312;genbank:gi:89152481;genbank:GeneID :3953072 Length = 565 Score = 219 bits (559), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 164/563 (29%), Positives = 269/563 (47%), Gaps = 32/563 (5%) Query: 8 VEQGLKFARDVVRGKRPACRYVQLACKRHLDDLAASRKKDFRWKFDPEAAERKLALIELL 67 +E+ + D++ GK +C+ + A +R + D + +D + FD E AE + Sbjct: 5 MERVFAYCEDILNGKINSCKKHRWAIERFIRDYEECQSEDSPFYFDGEIAEDFYWFAKEF 64 Query: 68 PHTKGEWAFKGQLVTLEPWQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGKSVTAAGV 127 H +G A G+ V L +Q F FG+ K G RRFR+ + ++ RKN KS A V Sbjct: 65 KHVEGILA--GESVELTDFQLFLAANIFGFKKKINGARRFRKVFIQLARKNAKSQFLAIV 122 Query: 128 GIGMFVLDDEFGAEVYAGATTEKQAWEVFRPAQLMVKRSPMLIDSAGIEVNASNMNKPAD 187 L DE Y T Q+ EV+ + + S +L + S + + Sbjct: 123 AAFCTFLGDE-KQRAYIAGWTRDQSSEVYEAVKTGISSSELL--EGKWKEAYSTIEIFKN 179 Query: 188 GSRFEPIIG---NPGDGASPSCAIVDEYHEHDSAALYETMLTGMGARRQPLMFIITTAGA 244 GS P+ GDG +PS IVDEYH H++ +Y+ + +GM AR++PLMFIITTAG Sbjct: 180 GSVVVPLSKEARKTGDGKNPSLGIVDEYHAHETDEIYDVLSSGMVARKEPLMFIITTAGF 239 Query: 245 NIEGPCFDKRRQVIEMLEGT--VPDDELFGWIWTIDEGDDWTDPRVLAKANPNIGISVYQ 302 ++ PC+ + V ++L+ + V +D+ F I +++ DD D KANP ++ Y+ Sbjct: 240 DLSRPCYREYEYVSDILDPSKNVENDDYFVMICELEKNDDIKDESNWIKANP--IVATYE 297 Query: 303 DYLE---SQQQRAIKSARFTNTFKTKHLNVWTSAK-AGYFNLEDWKSCEDRSLTLEQFEG 358 + LE S + A+ F TK++N+W K GY ++ W+ CE +L F G Sbjct: 298 EGLEGIRSDLKVALDRPEKMRAFLTKNMNIWVDKKDNGYMDMSKWQKCEVDTL---DFSG 354 Query: 359 QDCVLALDMARKLDLNSMARLFWHDIDGRRHYFCVAPRFWVPEDTVRNTENRRMA---ER 415 + D++ DL S+ W +D F V ++PE ++ +MA R Sbjct: 355 ATLWIGGDLSMTTDLTSVG---WVGMDDEGD-FIVGQHSFMPEARLK----EKMAIDKVR 406 Query: 416 YQAWVNQGCLLETDGAEIDYRDILEEAKDANRLCPVQCTPLDPHGATNLSHQLADEGLTP 475 Y W QG L T G +DY + ++ ++ +Q D A +L+ L ++G Sbjct: 407 YDLWAEQGYLTLTPGEMVDYTIVESWIENFSKDKEIQEFDYDKWNALHLAQNLENKGFVC 466 Query: 476 VTIVQNYTNMSDPMKELEAAITSGRFHHDGNPIMTWCVSNVIGKNLPGNDDVVRPIKQGN 535 V I Q N+S P K + + H+G+P++ W ++N + K + + + K+ + Sbjct: 467 VEIPQRIANLSIPTKNFREKVYEKKVKHNGDPVLFWALNNAVVK--MDDQENIMISKKIS 524 Query: 536 DNKIDGAVALIMAVGRAMLADRV 558 N+ID A A++ A RAM V Sbjct: 525 KNRIDPAAAVLNAFARAMYGASV 547 >gi|2423|lcl|protein:vir:107576 Length: 565 # NCBI annotation: phage terminase, large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1491 # MgeName: Gamma # Cross-refs: genbank:acc:YP_338185;genbank:gi:77020155;genbank:GeneID :3703707 Length = 565 Score = 218 bits (556), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 163/563 (28%), Positives = 268/563 (47%), Gaps = 32/563 (5%) Query: 8 VEQGLKFARDVVRGKRPACRYVQLACKRHLDDLAASRKKDFRWKFDPEAAERKLALIELL 67 +E+ + D++ GK +C+ + A +R + D + +D + FD E AE + Sbjct: 5 MERVFAYCEDILNGKINSCKKHRWAIERFIRDYEECQSEDSPFYFDGEIAEDFYWFAKEF 64 Query: 68 PHTKGEWAFKGQLVTLEPWQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGKSVTAAGV 127 H +G A G+ V L +Q F FG+ K G RRFR+ + ++ RKN KS A V Sbjct: 65 KHVEGILA--GESVELTDFQLFLAANIFGFKKKINGARRFRKVFIQLARKNAKSQFLAIV 122 Query: 128 GIGMFVLDDEFGAEVYAGATTEKQAWEVFRPAQLMVKRSPMLIDSAGIEVNASNMNKPAD 187 L DE Y T Q+ EV+ + + S +L + S + + Sbjct: 123 AAFCTFLGDE-KQRAYIAGWTRDQSSEVYEAVKTGISSSELL--EGKWKEAYSTIEIFKN 179 Query: 188 GSRFEPIIG---NPGDGASPSCAIVDEYHEHDSAALYETMLTGMGARRQPLMFIITTAGA 244 GS P+ GDG +PS IVDEYH H++ +Y+ + +GM AR++PLMFIITTAG Sbjct: 180 GSVVVPLSKEARKTGDGKNPSLGIVDEYHAHETDEIYDVLSSGMVARKEPLMFIITTAGF 239 Query: 245 NIEGPCFDKRRQVIEMLEGT--VPDDELFGWIWTIDEGDDWTDPRVLAKANPNIGISVYQ 302 ++ PC+ + V ++L+ + V +D+ F I +++ DD D KANP ++ Y+ Sbjct: 240 DLSRPCYREYEYVSDILDPSKNVENDDYFVMICELEKNDDIKDESNWIKANP--IVATYE 297 Query: 303 DYLE---SQQQRAIKSARFTNTFKTKHLNVWTSAK-AGYFNLEDWKSCEDRSLTLEQFEG 358 + LE S + A+ F TK++N+W K GY ++ W+ CE + F G Sbjct: 298 EGLEGIRSDLKVALDRPEKMRAFLTKNMNIWVDKKDNGYMDMSKWQKCEVDTF---DFSG 354 Query: 359 QDCVLALDMARKLDLNSMARLFWHDIDGRRHYFCVAPRFWVPEDTVRNTENRRMA---ER 415 + D++ DL S+ W +D F V ++PE ++ +MA R Sbjct: 355 ATLWIGGDLSMTTDLTSVG---WVGMDDEGD-FIVGQHSFMPEARLK----EKMAIDKVR 406 Query: 416 YQAWVNQGCLLETDGAEIDYRDILEEAKDANRLCPVQCTPLDPHGATNLSHQLADEGLTP 475 Y W QG L T G +DY + ++ ++ +Q D A +L+ L ++G Sbjct: 407 YDLWAEQGYLTLTPGEMVDYTIVESWIENFSKDKEIQEFDYDKWNALHLAQNLENKGFVC 466 Query: 476 VTIVQNYTNMSDPMKELEAAITSGRFHHDGNPIMTWCVSNVIGKNLPGNDDVVRPIKQGN 535 V I Q N+S P K + + H+G+P++ W ++N + K + + + K+ + Sbjct: 467 VEIPQRIANLSIPTKNFREKVYEKKVKHNGDPVLFWALNNAVVK--MDDQENIMISKKIS 524 Query: 536 DNKIDGAVALIMAVGRAMLADRV 558 N+ID A A++ A RAM V Sbjct: 525 KNRIDPAAAVLNAFSRAMYGASV 547 >gi|2370|lcl|protein:vir:105001 Length: 565 # NCBI annotation: putative phage terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1490 # MgeName: W Beta # Cross-refs: genbank:acc:YP_459966;genbank:gi:85701381;genbank:GeneID :3882142 Length = 565 Score = 218 bits (556), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 163/563 (28%), Positives = 268/563 (47%), Gaps = 32/563 (5%) Query: 8 VEQGLKFARDVVRGKRPACRYVQLACKRHLDDLAASRKKDFRWKFDPEAAERKLALIELL 67 +E+ + D++ GK +C+ + A +R + D + +D + FD E AE + Sbjct: 5 MERVFAYCEDILNGKINSCKKHRWAIERFIRDYEECQSEDSPFYFDGEIAEDFYWFAKEF 64 Query: 68 PHTKGEWAFKGQLVTLEPWQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGKSVTAAGV 127 H +G A G+ V L +Q F FG+ K G RRFR+ + ++ RKN KS A V Sbjct: 65 KHVEGILA--GESVELTDFQLFLAANIFGFKKKINGARRFRKVFIQLARKNAKSQFLAIV 122 Query: 128 GIGMFVLDDEFGAEVYAGATTEKQAWEVFRPAQLMVKRSPMLIDSAGIEVNASNMNKPAD 187 L DE Y T Q+ EV+ + + S +L + S + + Sbjct: 123 AAFCTFLGDE-KQRAYIAGWTRDQSSEVYEAVKTGISSSELL--EGKWKEAYSTIEIFKN 179 Query: 188 GSRFEPIIG---NPGDGASPSCAIVDEYHEHDSAALYETMLTGMGARRQPLMFIITTAGA 244 GS P+ GDG +PS IVDEYH H++ +Y+ + +GM AR++PLMFIITTAG Sbjct: 180 GSVVVPLSKEARKTGDGKNPSLGIVDEYHAHETDEIYDVLSSGMVARKEPLMFIITTAGF 239 Query: 245 NIEGPCFDKRRQVIEMLEGT--VPDDELFGWIWTIDEGDDWTDPRVLAKANPNIGISVYQ 302 ++ PC+ + V ++L+ + V +D+ F I +++ DD D KANP ++ Y+ Sbjct: 240 DLSRPCYREYEYVSDILDPSKNVENDDYFVMICELEKNDDIKDESNWIKANP--IVATYE 297 Query: 303 DYLE---SQQQRAIKSARFTNTFKTKHLNVWTSAK-AGYFNLEDWKSCEDRSLTLEQFEG 358 + LE S + A+ F TK++N+W K GY ++ W+ CE + F G Sbjct: 298 EGLEGIRSDLKVALDRPEKMRAFLTKNMNIWVDKKDNGYMDMSKWQKCEVDTF---DFSG 354 Query: 359 QDCVLALDMARKLDLNSMARLFWHDIDGRRHYFCVAPRFWVPEDTVRNTENRRMA---ER 415 + D++ DL S+ W +D F V ++PE ++ +MA R Sbjct: 355 ATLWIGGDLSMTTDLTSVG---WVGMDDEGD-FIVGQHSFMPEARLK----EKMAIDKVR 406 Query: 416 YQAWVNQGCLLETDGAEIDYRDILEEAKDANRLCPVQCTPLDPHGATNLSHQLADEGLTP 475 Y W QG L T G +DY + ++ ++ +Q D A +L+ L ++G Sbjct: 407 YDLWAEQGYLTLTPGEMVDYTIVESWIENFSKDKEIQEFDYDKWNALHLAQNLENKGFVC 466 Query: 476 VTIVQNYTNMSDPMKELEAAITSGRFHHDGNPIMTWCVSNVIGKNLPGNDDVVRPIKQGN 535 V I Q N+S P K + + H+G+P++ W ++N + K + + + K+ + Sbjct: 467 VEIPQRIANLSIPTKNFREKVYEKKVKHNGDPVLFWALNNAVVK--MDDQENIMISKKIS 524 Query: 536 DNKIDGAVALIMAVGRAMLADRV 558 N+ID A A++ A RAM V Sbjct: 525 KNRIDPAAAVLNAFARAMYGASV 547 >gi|2476|lcl|protein:vir:102883 Length: 565 # NCBI annotation: phage terminase, large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1492 # MgeName: Cherry # Cross-refs: genbank:acc:YP_338134;genbank:gi:77020208;genbank:GeneID :3703792 Length = 565 Score = 218 bits (555), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 163/563 (28%), Positives = 268/563 (47%), Gaps = 32/563 (5%) Query: 8 VEQGLKFARDVVRGKRPACRYVQLACKRHLDDLAASRKKDFRWKFDPEAAERKLALIELL 67 +E+ + D++ GK +C+ + A +R + D + +D + FD E AE + Sbjct: 5 MERVFAYCEDILNGKINSCKKHRWAIERFIRDYEECQSEDSPFYFDGEIAEDFYWFAKEF 64 Query: 68 PHTKGEWAFKGQLVTLEPWQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGKSVTAAGV 127 H +G A G+ V L +Q F FG+ K G RRFR+ + ++ RKN KS A V Sbjct: 65 KHVEGILA--GESVELTDFQLFLAANIFGFKKKINGARRFRKVFIQLARKNAKSQFLAIV 122 Query: 128 GIGMFVLDDEFGAEVYAGATTEKQAWEVFRPAQLMVKRSPMLIDSAGIEVNASNMNKPAD 187 L DE Y T Q+ EV+ + + S +L + S + + Sbjct: 123 AAFCTFLGDE-KQRAYIAGWTRDQSSEVYEAVKTGISSSELL--EGKWKEAYSTIEIFKN 179 Query: 188 GSRFEPIIG---NPGDGASPSCAIVDEYHEHDSAALYETMLTGMGARRQPLMFIITTAGA 244 GS P+ GDG +PS IVDEYH H++ +Y+ + +GM AR++PLMFIITTAG Sbjct: 180 GSVVVPLSKEARKTGDGKNPSLGIVDEYHAHETDEIYDVLSSGMVARKEPLMFIITTAGF 239 Query: 245 NIEGPCFDKRRQVIEMLEGT--VPDDELFGWIWTIDEGDDWTDPRVLAKANPNIGISVYQ 302 ++ PC+ + V ++L+ + V +D+ F I +++ DD D KANP ++ Y+ Sbjct: 240 DLSRPCYREYEYVSDILDPSKNVENDDYFVMICELEKNDDIKDESNWIKANP--IVATYE 297 Query: 303 DYLE---SQQQRAIKSARFTNTFKTKHLNVWTSAK-AGYFNLEDWKSCEDRSLTLEQFEG 358 + LE S + A+ F TK++N+W K GY ++ W+ CE + F G Sbjct: 298 EGLEGIRSDLKVALDRPEKMRAFLTKNMNIWVDKKDNGYMDMSKWQKCE---VDTXDFSG 354 Query: 359 QDCVLALDMARKLDLNSMARLFWHDIDGRRHYFCVAPRFWVPEDTVRNTENRRMA---ER 415 + D++ DL S+ W +D F V ++PE ++ +MA R Sbjct: 355 ATLWIGGDLSMTTDLTSVG---WVGMDDEGD-FIVGQHSFMPEARLK----EKMAIDKVR 406 Query: 416 YQAWVNQGCLLETDGAEIDYRDILEEAKDANRLCPVQCTPLDPHGATNLSHQLADEGLTP 475 Y W QG L T G +DY + ++ ++ +Q D A +L+ L ++G Sbjct: 407 YDLWAEQGYLTLTPGEMVDYTIVESWIENFSKDKEIQEFDYDKWNALHLAQNLENKGFVC 466 Query: 476 VTIVQNYTNMSDPMKELEAAITSGRFHHDGNPIMTWCVSNVIGKNLPGNDDVVRPIKQGN 535 V I Q N+S P K + + H+G+P++ W ++N + K + + + K+ + Sbjct: 467 VEIPQRIANLSIPTKNFREKVYEKKVKHNGDPVLFWALNNAVVK--MDDQENIMISKKIS 524 Query: 536 DNKIDGAVALIMAVGRAMLADRV 558 N+ID A A++ A RAM V Sbjct: 525 KNRIDPAAAVLNAFXRAMYGASV 547 >gi|11420|lcl|protein:vir:78630 Length: 563 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1855 # MgeName: tp310-2 # Cross-refs: genbank:acc:YP_001429940;genbank:gi:156603994;genbank:Ge neID:5525376 Length = 563 Score = 211 bits (536), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 163/538 (30%), Positives = 255/538 (47%), Gaps = 26/538 (4%) Query: 14 FARDVVRGKRPACRYVQLACKRHLDDLAASRKKDFRWKFDPEAAERKLALIE-LLPHTKG 72 +A V +GK +YV+ C+RHL L K W FD E A R + IE +KG Sbjct: 18 YAEQVTQGKIKTSKYVKKECERHLRYLENGGK----WVFDEELAHRPIRFIEKFCKPSKG 73 Query: 73 EWAFKGQLVTLEPWQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGKSVTAAGVGIGMF 132 K QLV L+PWQ F + + FGW++K T RRF+E+ + RKNGK+ T +GV Sbjct: 74 S---KRQLV-LQPWQHFIIGSLFGWVHKETKLRRFKEALIFMGRKNGKTTTISGVANYAV 129 Query: 133 VLDDEFGAEVYAGATTEKQAWEVFRPAQLMVKRSPMLIDSAGIEVNASNMNKPADGSRFE 192 D E GAE++ A KQA +F ++ M+K SP L ++ A S+ Sbjct: 130 SQDGENGAEIHLLANVMKQARILFDESKAMIKASPKL--DKNFRTLRDEIHYDATISKIM 187 Query: 193 PIIGNPG--DGASPSCAIVDEYHEHDSAALYETMLTGMGARRQPLMFIITTAGANIEGPC 250 P + DG + I DE HE L + AR QPL+ ITTAG ++GP Sbjct: 188 PQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITTAGYQLDGPL 247 Query: 251 FDKRRQVIEMLEGTVPDDELFGWIWTIDEGDDWTDPRVLAKANPNIGISVYQDYLESQQQ 310 D + L+ + D+ F ++ ++D+ DD D KANPN+G+S+ D ++ + + Sbjct: 248 VDMVEAGRDTLDQIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGVSINLDEMKEEWE 307 Query: 311 RAIKSARFTNTFKTKHLNVWTSAKAGYFNLEDWKSCEDRS--LTLEQFEGQDCVLALDMA 368 +A ++ F TK N++ A + D+ + + + ++LE+ EG+ C + D++ Sbjct: 308 KAKRTPAERGDFITKRFNIF--ANNDEMSFIDYPTLQKNNEIVSLEELEGRPCTIGYDLS 365 Query: 369 RKLDLNSMARLFWHDIDGRRHYFCVAPRFWVPEDTVRNTENRRMAERYQAWVNQGCLLET 428 D + F D +G+ V W+P+ V + N ++ Y+ W G L Sbjct: 366 ETEDFTAACATFALD-NGK---VAVLSHSWIPKHKVEYS-NEKIP--YREWEEDGLLTVQ 418 Query: 429 DGAEIDYRDILEEAKDANRLCPVQCTPLDPHGATNLSHQLADEGLTPVTIVQNYTNMSDP 488 D IDY+D+L N V+ D A L+ +L + G Q +S Sbjct: 419 DKPYIDYQDVLNWIIKMNEHYVVEKITYDRANAFKLNQELKNYGFETEETRQGALTLSPA 478 Query: 489 MKELEAAITSGRFHHDGNPIMTWCVSNVIGKNLPGNDDVVRPIKQGNDNKIDGAVALI 546 +K+L+ G+ + NP+M W ++NV K L N + + P KQ KIDG A + Sbjct: 479 LKDLKEMFLDGKIIFNNNPLMKWYINNVQLK-LDRNGNWL-PSKQSRYRKIDGFAAFL 534 >gi|3108|lcl|protein:vir:94427 Length: 563 # NCBI annotation: ORF005 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1506 # MgeName: 47 # Cross-refs: genbank:acc:YP_240002;genbank:gi:66395661;genbank:GeneID :5133087 Length = 563 Score = 211 bits (536), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 163/538 (30%), Positives = 255/538 (47%), Gaps = 26/538 (4%) Query: 14 FARDVVRGKRPACRYVQLACKRHLDDLAASRKKDFRWKFDPEAAERKLALIE-LLPHTKG 72 +A V +GK +YV+ C+RHL L K W FD E A R + IE +KG Sbjct: 18 YAEQVTQGKIKTSKYVKKECERHLRYLENGGK----WVFDEELAHRPIRFIEKFCKPSKG 73 Query: 73 EWAFKGQLVTLEPWQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGKSVTAAGVGIGMF 132 K QLV L+PWQ F + + FGW++K T RRF+E+ + RKNGK+ T +GV Sbjct: 74 S---KRQLV-LQPWQHFIIGSLFGWVHKETKLRRFKEALIFMGRKNGKTTTISGVANYAV 129 Query: 133 VLDDEFGAEVYAGATTEKQAWEVFRPAQLMVKRSPMLIDSAGIEVNASNMNKPADGSRFE 192 D E GAE++ A KQA +F ++ M+K SP L ++ A S+ Sbjct: 130 SQDGENGAEIHLLANVMKQARILFDESKAMIKASPKL--DKNFRTLRDEIHYDATISKIM 187 Query: 193 PIIGNPG--DGASPSCAIVDEYHEHDSAALYETMLTGMGARRQPLMFIITTAGANIEGPC 250 P + DG + I DE HE L + AR QPL+ ITTAG ++GP Sbjct: 188 PQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITTAGYQLDGPL 247 Query: 251 FDKRRQVIEMLEGTVPDDELFGWIWTIDEGDDWTDPRVLAKANPNIGISVYQDYLESQQQ 310 D + L+ + D+ F ++ ++D+ DD D KANPN+G+S+ D ++ + + Sbjct: 248 VDMVEAGRDTLDQIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGVSINLDEMKEEWE 307 Query: 311 RAIKSARFTNTFKTKHLNVWTSAKAGYFNLEDWKSCEDRS--LTLEQFEGQDCVLALDMA 368 +A ++ F TK N++ A + D+ + + + ++LE+ EG+ C + D++ Sbjct: 308 KAKRTPAERGDFITKRFNIF--ANNDEMSFIDYPTLQKNNEIVSLEELEGRPCTIGYDLS 365 Query: 369 RKLDLNSMARLFWHDIDGRRHYFCVAPRFWVPEDTVRNTENRRMAERYQAWVNQGCLLET 428 D + F D +G+ V W+P+ V + N ++ Y+ W G L Sbjct: 366 ETEDFTAACATFALD-NGK---VAVLSHSWIPKHKVEYS-NEKIP--YREWEEDGLLTVQ 418 Query: 429 DGAEIDYRDILEEAKDANRLCPVQCTPLDPHGATNLSHQLADEGLTPVTIVQNYTNMSDP 488 D IDY+D+L N V+ D A L+ +L + G Q +S Sbjct: 419 DKPYIDYQDVLNWIIKMNEHYVVEKITYDRANAFKLNQELKNYGFETEETRQGALTLSPA 478 Query: 489 MKELEAAITSGRFHHDGNPIMTWCVSNVIGKNLPGNDDVVRPIKQGNDNKIDGAVALI 546 +K+L+ G+ + NP+M W ++NV K L N + + P KQ KIDG A + Sbjct: 479 LKDLKEMFLDGKIIFNNNPLMKWYINNVQLK-LDRNGNWL-PSKQSRYRKIDGFAAFL 534 >gi|2221|lcl|protein:vir:93883 Length: 563 # NCBI annotation: ORF005 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1485 # MgeName: 3A # Cross-refs: genbank:acc:YP_239935;genbank:gi:66395593;genbank:GeneID :5130949 Length = 563 Score = 210 bits (534), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 163/538 (30%), Positives = 255/538 (47%), Gaps = 26/538 (4%) Query: 14 FARDVVRGKRPACRYVQLACKRHLDDLAASRKKDFRWKFDPEAAERKLALIE-LLPHTKG 72 +A V +GK +YV+ C+RHL L K W FD E A R + IE +KG Sbjct: 18 YAEQVTQGKIKTSKYVRKECERHLRYLENGGK----WVFDEELAHRPIRFIEKFCKPSKG 73 Query: 73 EWAFKGQLVTLEPWQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGKSVTAAGVGIGMF 132 K QLV L+PWQ F + + FGW++K T RRF+E+ + RKNGK+ T +GV Sbjct: 74 S---KRQLV-LQPWQHFIIGSLFGWVHKETKLRRFKEALIFMGRKNGKTTTISGVANYAV 129 Query: 133 VLDDEFGAEVYAGATTEKQAWEVFRPAQLMVKRSPMLIDSAGIEVNASNMNKPADGSRFE 192 D E GAE++ A KQA +F ++ M+K SP L ++ A S+ Sbjct: 130 SQDGENGAEIHLLANVMKQARILFDESKAMIKASPKL--DKNFRTLRDEIHYDATISKIM 187 Query: 193 PIIGNPG--DGASPSCAIVDEYHEHDSAALYETMLTGMGARRQPLMFIITTAGANIEGPC 250 P + DG + I DE HE L + AR QPL+ ITTAG ++GP Sbjct: 188 PQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITTAGYQLDGPL 247 Query: 251 FDKRRQVIEMLEGTVPDDELFGWIWTIDEGDDWTDPRVLAKANPNIGISVYQDYLESQQQ 310 D + L+ + D+ F ++ ++D+ DD D KANPN+G+S+ D ++ + + Sbjct: 248 VDMVEAGRDTLDQIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGVSINLDEMKEEWE 307 Query: 311 RAIKSARFTNTFKTKHLNVWTSAKAGYFNLEDWKSCEDRS--LTLEQFEGQDCVLALDMA 368 +A ++ F TK N++ A + D+ + + + ++LE+ EG+ C + D++ Sbjct: 308 KAKRTPAERGDFITKRFNIF--ANNDEMSFIDYPTLQKNNEIVSLEELEGRPCTIGYDLS 365 Query: 369 RKLDLNSMARLFWHDIDGRRHYFCVAPRFWVPEDTVRNTENRRMAERYQAWVNQGCLLET 428 D + F D +G+ V W+P+ V + N ++ Y+ W G L Sbjct: 366 ETEDFTAACATFALD-NGK---VAVLSHSWIPKHKVEYS-NEKIP--YREWEEDGLLTVQ 418 Query: 429 DGAEIDYRDILEEAKDANRLCPVQCTPLDPHGATNLSHQLADEGLTPVTIVQNYTNMSDP 488 D IDY+D+L N V+ D A L+ +L + G Q +S Sbjct: 419 DKPYIDYQDVLNWIIKMNEHYVVEKITYDRANAFKLNQELKNYGFETEETRQGALTLSPA 478 Query: 489 MKELEAAITSGRFHHDGNPIMTWCVSNVIGKNLPGNDDVVRPIKQGNDNKIDGAVALI 546 +K+L+ G+ + NP+M W ++NV K L N + + P KQ KIDG A + Sbjct: 479 LKDLKEMFLDGKIIFNNNPLMKWYINNVQLK-LDRNGNWL-PSKQSRYRKIDGFAAFL 534 >gi|17412|lcl|protein:vir:2682 Length: 563 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:57 # MgeName: phiSLT # Cross-refs: genbank:acc:NP_075501;genbank:gi:12719430;genbank:GeneID :920187 Length = 563 Score = 207 bits (526), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 162/538 (30%), Positives = 257/538 (47%), Gaps = 26/538 (4%) Query: 14 FARDVVRGKRPACRYVQLACKRHLDDLAASRKKDFRWKFDPEAAERKLALIE-LLPHTKG 72 +A V +GK +YV+ C+RHL L K W FD E A R + IE +KG Sbjct: 18 YAEQVTQGKIKTSKYVKKECERHLRYLENGGK----WVFDEELAHRPIRFIEKFCKPSKG 73 Query: 73 EWAFKGQLVTLEPWQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGKSVTAAGVGIGMF 132 K QLV L+PWQ F + + FGW++K T RRF+E+ + RKNGK+ T +GV Sbjct: 74 S---KRQLV-LQPWQHFIIGSLFGWVHKETKLRRFKEALIFMGRKNGKTTTISGVANYAV 129 Query: 133 VLDDEFGAEVYAGATTEKQAWEVFRPAQLMVKRSPMLIDSAGIEVNASNMNKPADGSRFE 192 D E GAE++ A KQA +F ++ M+K SP L ++ ++ A S+ Sbjct: 130 SQDGENGAEIHLLANVMKQARILFDESKAMIKASPKLREN--FRPLRDEIHYDATISKIM 187 Query: 193 PIIGNPG--DGASPSCAIVDEYHEHDSAALYETMLTGMGARRQPLMFIITTAGANIEGPC 250 P + DG + I DE HE L + AR QPL+ ITTAG ++GP Sbjct: 188 PQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITTAGYQLDGPL 247 Query: 251 FDKRRQVIEMLEGTVPDDELFGWIWTIDEGDDWTDPRVLAKANPNIGISVYQDYLESQQQ 310 D + L+ + D+ F ++ ++D+ DD D KANPN+G+S+ D ++ + + Sbjct: 248 VDMVEAGRDTLDQIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGVSIDLDEMKEEWE 307 Query: 311 RAIKSARFTNTFKTKHLNVWTSAKAGYFNLEDWKSCEDRS--LTLEQFEGQDCVLALDMA 368 +A ++ F TK N++ A + D+ + + + ++L++ EG+ C + D++ Sbjct: 308 KAKRTPAERGDFITKRFNIF--ANNDEMSFIDYPTLQKNNEIISLDELEGRPCTIGYDLS 365 Query: 369 RKLDLNSMARLFWHDIDGRRHYFCVAPRFWVPEDTVRNTENRRMAERYQAWVNQGCLLET 428 D + F D +G+ V W+P+ V + N ++ Y+ W G L Sbjct: 366 ETEDFTAACATFALD-NGK---VAVLTHSWIPKHKVEYS-NEKIP--YREWEEDGLLTIQ 418 Query: 429 DGAEIDYRDILEEAKDANRLCPVQCTPLDPHGATNLSHQLADEGLTPVTIVQNYTNMSDP 488 D IDY+D+L N V+ D A L+ +L + G Q +S Sbjct: 419 DKPYIDYQDVLNWIIKMNEHYVVEKITYDRANAFKLNQELKNYGFETEETRQGALTLSPA 478 Query: 489 MKELEAAITSGRFHHDGNPIMTWCVSNVIGKNLPGNDDVVRPIKQGNDNKIDGAVALI 546 +K+L+ G+ + NP+M W ++NV K L N + + P KQ KIDG A + Sbjct: 479 LKDLKEMFLDGKIIFNNNPLMKWYINNVQLK-LDRNGNWL-PSKQSRYRKIDGFAAFL 534 >gi|8807|lcl|protein:vir:96981 Length: 563 # NCBI annotation: ORF003 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1643 # MgeName: 42e # Cross-refs: genbank:acc:YP_239856;genbank:gi:66395511;genbank:GeneID :5133014 Length = 563 Score = 204 bits (519), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 161/538 (29%), Positives = 256/538 (47%), Gaps = 26/538 (4%) Query: 14 FARDVVRGKRPACRYVQLACKRHLDDLAASRKKDFRWKFDPEAAERKLALIE-LLPHTKG 72 +A V +GK +YV+ C+RHL L K W FD E A R + IE +KG Sbjct: 18 YAEQVTQGKIKTSKYVKKECERHLRYLENGGK----WVFDEELAHRPIRFIEKFCKPSKG 73 Query: 73 EWAFKGQLVTLEPWQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGKSVTAAGVGIGMF 132 K QLV L+PWQ F + + FGW++K T RRF+E+ + RKNGK+ T +GV Sbjct: 74 S---KRQLV-LQPWQHFIIGSLFGWVHKETKLRRFKEALIFMGRKNGKTTTISGVANYAV 129 Query: 133 VLDDEFGAEVYAGATTEKQAWEVFRPAQLMVKRSPMLIDSAGIEVNASNMNKPADGSRFE 192 D E GAE++ A KQA +F ++ M+K SP L ++ ++ A S+ Sbjct: 130 SQDGENGAEIHLLANVMKQARILFDESKAMIKASPKLREN--FRPLRDEIHYDATISKIM 187 Query: 193 PIIGNPG--DGASPSCAIVDEYHEHDSAALYETMLTGMGARRQPLMFIITTAGANIEGPC 250 P + DG + I DE HE L + AR QPL+ ITTAG ++GP Sbjct: 188 PQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITTAGYQLDGPL 247 Query: 251 FDKRRQVIEMLEGTVPDDELFGWIWTIDEGDDWTDPRVLAKANPNIGISVYQDYLESQQQ 310 + + L+ + D+ F ++ ++D+ DD D KANPN+G+S+ D ++ + + Sbjct: 248 VNMVEAGRDTLDRIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGVSIDLDEMKEEWE 307 Query: 311 RAIKSARFTNTFKTKHLNVWTSAKAGYFNLEDWKSCEDRS--LTLEQFEGQDCVLALDMA 368 +A ++ F TK N++ A + D+ + + + ++L++ EG+ C + D++ Sbjct: 308 KAKRTPDERGDFITKRFNIF--ANNDEMSFIDYPTLQKNNDIISLDELEGRPCTIGYDLS 365 Query: 369 RKLDLNSMARLFWHDIDGRRHYFCVAPRFWVPEDTVRNTENRRMAERYQAWVNQGCLLET 428 D + F D +G+ V W+P+ V + N ++ Y W G L Sbjct: 366 ETEDFTAACATFALD-NGK---VAVLTHSWIPKHKVEYS-NEKIP--YIEWEEDGLLTIQ 418 Query: 429 DGAEIDYRDILEEAKDANRLCPVQCTPLDPHGATNLSHQLADEGLTPVTIVQNYTNMSDP 488 D IDY+D+L N V+ D A L+ +L + G Q +S Sbjct: 419 DNPYIDYQDVLNWIIKMNEHYVVEKITYDRANAFKLNQELKNYGFETEETRQGALTLSPA 478 Query: 489 MKELEAAITSGRFHHDGNPIMTWCVSNVIGKNLPGNDDVVRPIKQGNDNKIDGAVALI 546 +K+L+ G+ + NP+M W ++NV K L N + + P KQ KIDG A + Sbjct: 479 LKDLKEMFLDGKIIFNNNPLMKWYINNVQLK-LDRNGNWL-PSKQSRYRKIDGFAAFL 534 >gi|967|lcl|protein:vir:6208 Length: 574 # NCBI annotation: Terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:128 # MgeName: phBC6A52 # Cross-refs: genbank:acc:NP_852588;genbank:gi:31415848;genbank:GeneID :1489206 Length = 574 Score = 201 bits (512), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 169/582 (29%), Positives = 269/582 (46%), Gaps = 34/582 (5%) Query: 6 PRVEQGLKFARDVVRGKRPACRYVQLACKRHLDDLAASRKKDFRWKFDPEAAERKLALIE 65 P V K+A +V+R K+ + + LA +R+ +K+ W FD + A L ++ Sbjct: 5 PGVNYADKYANNVMRNKKKYPKSIILAVERY----KKWKKRKEIW-FDVDRANEMLDFVQ 59 Query: 66 -LLPHTKGEWAFKGQLVTLEPWQKFGLMATFGWLNK-RTGK--RRFRESYWEVPRKNGKS 121 + H KG A GQL+ LE W+ F +GW +K GK R RESY +VP+KNGK+ Sbjct: 60 SFIRHVKGPLA--GQLMELELWEMFVFANMYGWYHKNEKGKTVRVIRESYVQVPKKNGKT 117 Query: 122 VTAAGVGIGMFVLDDEFGAEVYAGATTEKQAWEVFRPAQLMVKRSPMLIDSAGIE--VNA 179 + AAG + + E GA+ Y A+ +QA P ++ S L I VN Sbjct: 118 IIAAGALLYAMYGELELGADCYCAASDYEQAQNAAEPIAQAIENSEPLARHTQIYKGVNG 177 Query: 180 S--------NMNKPADGSRFEPIIGNPG--DGASPSCAIVDEYHEHDSAALYETMLTGMG 229 + ++N A ++F+ + N +G +P + DE H ++ +Y+ + + Sbjct: 178 TVSGAMYRYSINGIAYQNKFKVLTKNTKGLEGKNPYFVLNDELHAQENMDMYDNLKSAQI 237 Query: 230 ARRQPLMFIITTAGANIEGPCFDKRRQVIEMLEGTVPDDELFGWIWTIDEGDDWTDPRVL 289 +R QP+M I+TAG + +LE DD LF IW ++ DW D +V Sbjct: 238 SREQPMMLNISTAGKGASSVGMRVYKYAKLVLEND-DDDSLFVAIWEPNKNYDWEDRKVW 296 Query: 290 AKANPNIGISVYQDYLESQQQRAIKSARFTNTFKTKHLNVWTSAKAGYFNLEDWKSCEDR 349 NPNIG+SV + LE + ++A +SA F +KHLNV+ + YF + + + Sbjct: 297 KMVNPNIGVSVTMEQLEIEFKKAKQSAHSKAEFLSKHLNVFVNGADNYFEHDQVQHVLVK 356 Query: 350 SLTLEQFEGQDCVLALDMARKLDLNSMARLF-WHDIDGRRHYFCVAPRFWVPEDTVRNTE 408 L G+ C L LD+++ DL ++ F HD +GR V +++P + + E Sbjct: 357 DLG--DLTGEICYLGLDLSKTTDLTCVSLNFPSHDDEGRS-IIKVKQMYFLPNENIDFKE 413 Query: 409 NRRMAERYQAWVNQGCLLETDGAEIDYRDILEEAKDANRLCPVQCTPLDPHGATNLSHQL 468 Y V +G DG ID I+E + L VQ DP + L +L Sbjct: 414 KEDNVP-YTDMVERGFATFCDGKMIDQDQIMEYIVECMDLYDVQQINYDPAMSQKLIEKL 472 Query: 469 ADEGLTPVTIVQNYTNMSDPMKELEAAITSGRFHHDGNPIMTWCVSN-VIGKNLPGNDDV 527 + GL + + Q M+ + + E I R D NP+ +C N V+ N+ G + Sbjct: 473 ENLGLECIAVNQYPNVMNAMLDDSEILIYEKRLITD-NPLFVYCALNVVVVTNING---M 528 Query: 528 VRPIKQGNDNKIDGAVALIMAVGRAMLADRVDSESIYDQGVG 569 P K+ + KIDG VA + A M+ +E D+ +G Sbjct: 529 KAPSKRQSKKKIDGFVAFLCAHKETMMVMDSITEEGMDELIG 570 >gi|12641|lcl|protein:vir:80117 Length: 572 # NCBI annotation: Phage terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1877 # MgeName: bacteriophage bv1 # Cross-refs: genbank:acc:YP_001425601;genbank:gi:155042934;genbank:Ge neID:5469543 Length = 572 Score = 160 bits (405), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 142/562 (25%), Positives = 257/562 (45%), Gaps = 35/562 (6%) Query: 12 LKFARDVVRGKRPACRYVQLACKRHLDDLAASRKKDFRWKFDPEAAERKLALIE-LLPHT 70 +++A+ +V G++ ACR + A KR DL + + F+P AE + +IE H Sbjct: 11 MEYAKSIVDGRKVACRELIQAAKRFFKDLENPK-----YDFNPREAEFVIQIIEKTFVHD 65 Query: 71 KGE----WAFKGQLVTLEPWQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGKSVTAAG 126 +GE +G+ LEPWQKF + G+ K T RRF+E++ +PRKNGK+ A Sbjct: 66 QGERLDGTPLRGEPFLLEPWQKFIIYNLLGFYLKGTKIRRFKEAFIFIPRKNGKTRLIAA 125 Query: 127 VGIGMFVLDDEFGAEVYAGATTEKQAWEVFRPAQLMVKRSPMLIDSAGIEVNASN--MNK 184 + + +L+ + G+++Y + +Q+ + F +++ + + N N + Sbjct: 126 LAWALALLERQSGSKIYITSAALQQSLQSFEFILFNLRQMGEEQNFRILNNNQENSISGE 185 Query: 185 PADGSRF-EPIIGNPGDGASPSC--AIVDEYHEHDSAALYETMLTGMGARRQPLMFIITT 241 +DGS + + NP S +C I DE H + + Y + M A LM ITT Sbjct: 186 FSDGSIYIRALAANPDKQDSLNCNVGIADEMHAYKTPKQYNIIKEAMKAYTNKLMIGITT 245 Query: 242 AGANIEGPCFDKRRQVIEMLEGTVPDDELFGWIWTIDEGD----DWTDPRVLAKANPNIG 297 AG ++ C+ + + ++L+ TV D+ F +I DE + D+T+P KANPN G Sbjct: 246 AGDDMTSFCYQRLQYCKKILDETVTDEAYFVFICKADEDENGEVDYTNPIEHEKANPNYG 305 Query: 298 ISVYQDYLESQQQRAIKSARFTNTFKTKHLNVWTSAKAGYFNLEDWKSCEDR-SLTLEQF 356 +++ D + + +A + F K LN++TS YFN++++K + + T+EQ Sbjct: 306 VTIRPDDIMNDALQAQNDPQQRKDFLAKSLNIYTSPMKAYFNIDEFKKSDRKYDWTIEQL 365 Query: 357 E--GQDCVLALDMARKLDLNSMARLFWHDIDGRRHYFCVAPRFWVP-EDTVRNTENRRMA 413 G D D+++ DL + A + + +G A W P R E + Sbjct: 366 AKLGIDWFGGADLSKLHDLTAAA--LYGNYNGVDIAITHA---WFPIVAATRKAEEDNIP 420 Query: 414 ERYQAWVNQGCLLETDGAEIDYRDILE--EAKDANRLCPVQCTPLDPHGATNLSHQLADE 471 W + G L T+ +++ D+++ E A ++ D + + Sbjct: 421 --LFGWRDDGWLTMTNTPTVNFSDVVKWFETMRAKGF-KIKQVGFDRKFGREFFMAMKQK 477 Query: 472 GLTPVTIVQNYTNMSDPMKELEAAITSGRFHHDGNPIMTWCVSNVIGKNLPGNDDVVRPI 531 V Q Y S+ + +E + G+F++ + +CV NV + DD+++ Sbjct: 478 RFNIVDQPQYYYKKSEGFRRIEKQVKDGKFYYLHSQAFEYCVQNVHA--IEKTDDMIQFE 535 Query: 532 KQGNDNKIDGAVALIMAVGRAM 553 K + ++ID A + A R + Sbjct: 536 KIEDKHRIDIFDATVFAAIRML 557 >gi|5726|lcl|protein:vir:95379 Length: 573 # NCBI annotation: phage terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1567 # MgeName: GBSV1 # Cross-refs: genbank:acc:YP_764473;genbank:gi:115334627;genbank:GeneI D:5179266 Length = 573 Score = 160 bits (404), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 142/562 (25%), Positives = 257/562 (45%), Gaps = 35/562 (6%) Query: 12 LKFARDVVRGKRPACRYVQLACKRHLDDLAASRKKDFRWKFDPEAAERKLALIE-LLPHT 70 +++A+ +V G++ ACR + A KR DL + + F+P AE + +IE H Sbjct: 11 MEYAKSIVDGRKVACRELIQAAKRFFKDLENPK-----YDFNPREAEFVIQIIEKTFVHD 65 Query: 71 KGE----WAFKGQLVTLEPWQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGKSVTAAG 126 +GE +G+ LEPWQKF + G+ K T RRF+E++ +PRKNGK+ A Sbjct: 66 QGERLDGTPLRGEPFLLEPWQKFIIYNLLGFYLKGTKIRRFKEAFIFIPRKNGKTRLIAA 125 Query: 127 VGIGMFVLDDEFGAEVYAGATTEKQAWEVFRPAQLMVKRSPMLIDSAGIEVNASN--MNK 184 + + +L+ + G+++Y + +Q+ + F +++ + + N N + Sbjct: 126 LAWALALLERQSGSKIYITSAALQQSLQSFEFILFNLRQMGEEQNFRILNNNQENSISGE 185 Query: 185 PADGSRF-EPIIGNPGDGASPSC--AIVDEYHEHDSAALYETMLTGMGARRQPLMFIITT 241 +DGS + + NP S +C I DE H + + Y + M A LM ITT Sbjct: 186 FSDGSIYIRALAANPDKQDSLNCNVGIADEMHAYKTPKQYNIIKEAMKAYTNKLMIGITT 245 Query: 242 AGANIEGPCFDKRRQVIEMLEGTVPDDELFGWIWTIDEGD----DWTDPRVLAKANPNIG 297 AG ++ C+ + + ++L+ TV D+ F +I DE + D+T+P KANPN G Sbjct: 246 AGDDMTSFCYQRLQYCKKILDETVTDEAYFVFICKADEDENGEVDYTNPIEHEKANPNYG 305 Query: 298 ISVYQDYLESQQQRAIKSARFTNTFKTKHLNVWTSAKAGYFNLEDWKSCEDR-SLTLEQF 356 +++ D + + +A + F K LN++TS YFN++++K + + T+EQ Sbjct: 306 VTIRPDDIMNDALQAQNDPQQRKDFLAKSLNIYTSPMKAYFNIDEFKKSDRKYDWTIEQL 365 Query: 357 E--GQDCVLALDMARKLDLNSMARLFWHDIDGRRHYFCVAPRFWVP-EDTVRNTENRRMA 413 G D D+++ DL + A + + +G A W P R E + Sbjct: 366 AKLGIDWFGGADLSKLHDLTAAA--LYGNYNGVDIAITHA---WFPIVAATRKAEEDNIP 420 Query: 414 ERYQAWVNQGCLLETDGAEIDYRDILE--EAKDANRLCPVQCTPLDPHGATNLSHQLADE 471 W + G L T+ +++ D+++ E A ++ D + + Sbjct: 421 --LFGWRDDGWLTMTNTPTVNFSDVVKWFETMRAKGF-KIKQVGFDRKFGREFFMAMKQK 477 Query: 472 GLTPVTIVQNYTNMSDPMKELEAAITSGRFHHDGNPIMTWCVSNVIGKNLPGNDDVVRPI 531 V Q Y S+ + +E + G+F++ + +CV NV + DD+++ Sbjct: 478 RFNIVDQPQYYYKKSEGFRRIEKQVKDGKFYYLHSQAFEYCVQNVHA--IEKTDDMIQFE 535 Query: 532 KQGNDNKIDGAVALIMAVGRAM 553 K + ++ID A + A R + Sbjct: 536 KIEDKHRIDIFDATVFAAIRML 557 >gi|6158|lcl|protein:vir:98395 Length: 564 # NCBI annotation: phage terminase-large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1581 # MgeName: phiPVL(108) # Cross-refs: genbank:acc:YP_918928;genbank:gi:119443690;genbank:GeneI D:4594557 Length = 564 Score = 149 bits (377), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 135/567 (23%), Positives = 250/567 (44%), Gaps = 48/567 (8%) Query: 13 KFARDVVRGKRPACRYVQLACKRHLDDLAASRKKDFRWKFDPEAAERKLALIELLPHTKG 72 K+A+ VV G+ A CKRHL + W D + + + +E+LP K Sbjct: 7 KYAKKVVSGEILASLKNIQVCKRHLS-FMENPPNGCHW--DNHLSNKAIKFVEMLPDPKT 63 Query: 73 EWAFKGQLVTLEPWQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGKSVTAAGVGIGMF 132 Q + L +QKF + + +GW +R R F ++Y + RK GKS+ +G+ + Sbjct: 64 -----NQPMPLMEFQKFIVGSLYGW--RRGQYRMFTKAYISMARKQGKSLIVSGMSVNEL 116 Query: 133 VLDD--EFGAEVYAGATTEKQAWEVFRPA--QLMVKRSPMLIDSAGIEVNASNMNKPADG 188 + +F ++Y ++T KQA +F+ A Q+ + RS +V +++ Sbjct: 117 LFGQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSS 176 Query: 189 SRFEPIIGNPG--DGASPSCAIVDEYHEHDSAALYETMLTGMGARRQPLMFIITTAGANI 246 S F P+ NP DG P+ AI+DE +Y TGM ++ PL +++TAG N+ Sbjct: 177 SVFAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNL 236 Query: 247 EGPCFDKRRQVIEMLEGTVPDDELFGWIWTIDEGDDWTDPRVLAKANPNIGISVYQDYL- 305 + + + + +L V D F + +D ++ D KA P + ++ + Sbjct: 237 NSQMYQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTIL 296 Query: 306 ---ESQQQRAIKSARFTNTFKTKHLNVWTSAKA-GYFNLEDWKSCEDRSLTLEQFEGQDC 361 ++ Q ++ + K+ N+W + + ++ DW E + G+D Sbjct: 297 QNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDW---EQVITPMPNINGKDV 353 Query: 362 VLALDMARKLDLNSMARLFWHD---IDGRRHYFCVAPRFWVPEDTVRNTENRRMA-ERYQ 417 + +D++R DL S+ +F +D + H F + R + + + R+ N +A ER + Sbjct: 354 YIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSF-IGLRTNLEQKSKRDKINYELAIERGE 412 Query: 418 AWVNQGCLLETDGAEIDYRDILE------EAKDANRLCPVQCTPLDPHGATNLSHQLADE 471 A Q +D IDY+ +++ D N VQ DP A + + Sbjct: 413 AETTQ-----SDSGMIDYKQVIDFIVKFITTHDLN----VQAVCYDPWNAQSFITTIESM 463 Query: 472 GLT--PVTIVQNYTNMSDPMKELEAAITSGRFHHDGNPIMTWCVSNVIGKNLPGNDDVVR 529 L + + Q++ +S +KE + R H+ N ++T V+N + + +D V+ Sbjct: 464 ALDWPLIEVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVL--IRDGEDNVK 521 Query: 530 PIKQGNDNKIDGAVALIMAVGRAMLAD 556 K+ N KID +++I A A + + Sbjct: 522 INKKMNRQKIDPIISIITAFTEARMHE 548 >gi|16578|lcl|protein:vir:9406 Length: 564 # NCBI annotation: terminase-large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:167 # MgeName: phi 13 # Cross-refs: genbank:acc:NP_803384;genbank:gi:29028696;genbank:GeneID :1258137 Length = 564 Score = 149 bits (377), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 135/567 (23%), Positives = 250/567 (44%), Gaps = 48/567 (8%) Query: 13 KFARDVVRGKRPACRYVQLACKRHLDDLAASRKKDFRWKFDPEAAERKLALIELLPHTKG 72 K+A+ VV G+ A CKRHL + W D + + + +E+LP K Sbjct: 7 KYAKKVVSGEILASLKNIQVCKRHLS-FMENPPNGCHW--DNHLSNKAIKFVEMLPDPKT 63 Query: 73 EWAFKGQLVTLEPWQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGKSVTAAGVGIGMF 132 Q + L +QKF + + +GW +R R F ++Y + RK GKS+ +G+ + Sbjct: 64 -----NQPMPLMEFQKFIVGSLYGW--RRGQYRMFTKAYISMARKQGKSLIVSGMSVNEL 116 Query: 133 VLDD--EFGAEVYAGATTEKQAWEVFRPA--QLMVKRSPMLIDSAGIEVNASNMNKPADG 188 + +F ++Y ++T KQA +F+ A Q+ + RS +V +++ Sbjct: 117 LFGQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSS 176 Query: 189 SRFEPIIGNPG--DGASPSCAIVDEYHEHDSAALYETMLTGMGARRQPLMFIITTAGANI 246 S F P+ NP DG P+ AI+DE +Y TGM ++ PL +++TAG N+ Sbjct: 177 SVFAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNL 236 Query: 247 EGPCFDKRRQVIEMLEGTVPDDELFGWIWTIDEGDDWTDPRVLAKANPNIGISVYQDYL- 305 + + + + +L V D F + +D ++ D KA P + ++ + Sbjct: 237 NSQMYQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTIL 296 Query: 306 ---ESQQQRAIKSARFTNTFKTKHLNVWTSAKA-GYFNLEDWKSCEDRSLTLEQFEGQDC 361 ++ Q ++ + K+ N+W + + ++ DW E + G+D Sbjct: 297 QNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDW---EQVITPMPNINGKDV 353 Query: 362 VLALDMARKLDLNSMARLFWHD---IDGRRHYFCVAPRFWVPEDTVRNTENRRMA-ERYQ 417 + +D++R DL S+ +F +D + H F + R + + + R+ N +A ER + Sbjct: 354 YIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSF-IGLRTNLEQKSKRDKINYELAIERGE 412 Query: 418 AWVNQGCLLETDGAEIDYRDILE------EAKDANRLCPVQCTPLDPHGATNLSHQLADE 471 A Q +D IDY+ +++ D N VQ DP A + + Sbjct: 413 AETTQ-----SDSGMIDYKQVIDFIVKFITTHDLN----VQAVCYDPWNAQSFITTIESM 463 Query: 472 GLT--PVTIVQNYTNMSDPMKELEAAITSGRFHHDGNPIMTWCVSNVIGKNLPGNDDVVR 529 L + + Q++ +S +KE + R H+ N ++T V+N + + +D V+ Sbjct: 464 ALDWPLIEVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVL--IRDGEDNVK 521 Query: 530 PIKQGNDNKIDGAVALIMAVGRAMLAD 556 K+ N KID +++I A A + + Sbjct: 522 INKKMNRQKIDPIISIITAFTEARMHE 548 >gi|13570|lcl|protein:vir:4696 Length: 564 # NCBI annotation: phi PVL ORF 2 homologue # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:102 # MgeName: phiPV83 # Cross-refs: genbank:acc:NP_061628;genbank:gi:9635715;genbank:GeneID: 1263009 Length = 564 Score = 149 bits (377), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 135/567 (23%), Positives = 250/567 (44%), Gaps = 48/567 (8%) Query: 13 KFARDVVRGKRPACRYVQLACKRHLDDLAASRKKDFRWKFDPEAAERKLALIELLPHTKG 72 K+A+ VV G+ A CKRHL + W D + + + +E+LP K Sbjct: 7 KYAKKVVSGEILASLKNIQVCKRHLS-FMENPPNGCHW--DNHLSNKAIKFVEMLPDPKT 63 Query: 73 EWAFKGQLVTLEPWQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGKSVTAAGVGIGMF 132 Q + L +QKF + + +GW +R R F ++Y + RK GKS+ +G+ + Sbjct: 64 -----NQPMPLMEFQKFIVGSLYGW--RRGQYRMFTKAYISMARKQGKSLIVSGMSVNEL 116 Query: 133 VLDD--EFGAEVYAGATTEKQAWEVFRPA--QLMVKRSPMLIDSAGIEVNASNMNKPADG 188 + +F ++Y ++T KQA +F+ A Q+ + RS +V +++ Sbjct: 117 LFGQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSS 176 Query: 189 SRFEPIIGNPG--DGASPSCAIVDEYHEHDSAALYETMLTGMGARRQPLMFIITTAGANI 246 S F P+ NP DG P+ AI+DE +Y TGM ++ PL +++TAG N+ Sbjct: 177 SVFAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNL 236 Query: 247 EGPCFDKRRQVIEMLEGTVPDDELFGWIWTIDEGDDWTDPRVLAKANPNIGISVYQDYL- 305 + + + + +L V D F + +D ++ D KA P + ++ + Sbjct: 237 NSQMYQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTIL 296 Query: 306 ---ESQQQRAIKSARFTNTFKTKHLNVWTSAKA-GYFNLEDWKSCEDRSLTLEQFEGQDC 361 ++ Q ++ + K+ N+W + + ++ DW E + G+D Sbjct: 297 QNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDW---EQVITPMPNINGKDV 353 Query: 362 VLALDMARKLDLNSMARLFWHD---IDGRRHYFCVAPRFWVPEDTVRNTENRRMA-ERYQ 417 + +D++R DL S+ +F +D + H F + R + + + R+ N +A ER + Sbjct: 354 YIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSF-IGLRTNLEQKSKRDKINYELAIERGE 412 Query: 418 AWVNQGCLLETDGAEIDYRDILE------EAKDANRLCPVQCTPLDPHGATNLSHQLADE 471 A Q +D IDY+ +++ D N VQ DP A + + Sbjct: 413 AETTQ-----SDSGMIDYKQVIDFIVKFITTHDLN----VQAVCYDPWNAQSFITTIESM 463 Query: 472 GLT--PVTIVQNYTNMSDPMKELEAAITSGRFHHDGNPIMTWCVSNVIGKNLPGNDDVVR 529 L + + Q++ +S +KE + R H+ N ++T V+N + + +D V+ Sbjct: 464 ALDWPLIEVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVL--IRDGEDNVK 521 Query: 530 PIKQGNDNKIDGAVALIMAVGRAMLAD 556 K+ N KID +++I A A + + Sbjct: 522 INKKMNRQKIDPIISIITAFTEARMHE 548 >gi|12519|lcl|protein:vir:79971 Length: 564 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1875 # MgeName: tp310-3 # Cross-refs: genbank:acc:YP_001429998;genbank:gi:156604053;genbank:Ge neID:5525431 Length = 564 Score = 149 bits (377), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 135/567 (23%), Positives = 250/567 (44%), Gaps = 48/567 (8%) Query: 13 KFARDVVRGKRPACRYVQLACKRHLDDLAASRKKDFRWKFDPEAAERKLALIELLPHTKG 72 K+A+ VV G+ A CKRHL + W D + + + +E+LP K Sbjct: 7 KYAKKVVSGEILASLKNIQVCKRHLS-FMENPPNGCHW--DNHLSNKAIKFVEMLPDPKT 63 Query: 73 EWAFKGQLVTLEPWQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGKSVTAAGVGIGMF 132 Q + L +QKF + + +GW +R R F ++Y + RK GKS+ +G+ + Sbjct: 64 -----NQPMPLMEFQKFIVGSLYGW--RRGQYRMFTKAYISMARKQGKSLIVSGMSVNEL 116 Query: 133 VLDD--EFGAEVYAGATTEKQAWEVFRPA--QLMVKRSPMLIDSAGIEVNASNMNKPADG 188 + +F ++Y ++T KQA +F+ A Q+ + RS +V +++ Sbjct: 117 LFGQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSS 176 Query: 189 SRFEPIIGNPG--DGASPSCAIVDEYHEHDSAALYETMLTGMGARRQPLMFIITTAGANI 246 S F P+ NP DG P+ AI+DE +Y TGM ++ PL +++TAG N+ Sbjct: 177 SVFAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNL 236 Query: 247 EGPCFDKRRQVIEMLEGTVPDDELFGWIWTIDEGDDWTDPRVLAKANPNIGISVYQDYL- 305 + + + + +L V D F + +D ++ D KA P + ++ + Sbjct: 237 NSQMYQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTIL 296 Query: 306 ---ESQQQRAIKSARFTNTFKTKHLNVWTSAKA-GYFNLEDWKSCEDRSLTLEQFEGQDC 361 ++ Q ++ + K+ N+W + + ++ DW E + G+D Sbjct: 297 QNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDW---EQVITPMPNINGKDV 353 Query: 362 VLALDMARKLDLNSMARLFWHD---IDGRRHYFCVAPRFWVPEDTVRNTENRRMA-ERYQ 417 + +D++R DL S+ +F +D + H F + R + + + R+ N +A ER + Sbjct: 354 YIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSF-IGLRTNLEQKSKRDKINYELAIERGE 412 Query: 418 AWVNQGCLLETDGAEIDYRDILE------EAKDANRLCPVQCTPLDPHGATNLSHQLADE 471 A Q +D IDY+ +++ D N VQ DP A + + Sbjct: 413 AETTQ-----SDSGMIDYKQVIDFIVKFITTHDLN----VQAVCYDPWNAQSFITTIESM 463 Query: 472 GLT--PVTIVQNYTNMSDPMKELEAAITSGRFHHDGNPIMTWCVSNVIGKNLPGNDDVVR 529 L + + Q++ +S +KE + R H+ N ++T V+N + + +D V+ Sbjct: 464 ALDWPLIELGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVL--IRDGEDNVK 521 Query: 530 PIKQGNDNKIDGAVALIMAVGRAMLAD 556 K+ N KID +++I A A + + Sbjct: 522 INKKMNRQKIDPIISIITAFTEARMHE 548 >gi|13171|lcl|protein:vir:81099 Length: 564 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1891 # MgeName: tp310-1 # Cross-refs: genbank:acc:YP_001429870;genbank:gi:156603923;genbank:Ge neID:5525319 Length = 564 Score = 149 bits (377), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 135/567 (23%), Positives = 250/567 (44%), Gaps = 48/567 (8%) Query: 13 KFARDVVRGKRPACRYVQLACKRHLDDLAASRKKDFRWKFDPEAAERKLALIELLPHTKG 72 K+A+ VV G+ A CKRHL + W D + + + +E+LP K Sbjct: 7 KYAKKVVSGEILASLKNIQVCKRHLS-FMENPPNGCHW--DNHLSNKAIKFVEMLPDPKT 63 Query: 73 EWAFKGQLVTLEPWQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGKSVTAAGVGIGMF 132 Q + L +QKF + + +GW +R R F ++Y + RK GKS+ +G+ + Sbjct: 64 -----NQPMPLMEFQKFIVGSLYGW--RRGQYRMFTKAYISMARKQGKSLIVSGMSVNEL 116 Query: 133 VLDD--EFGAEVYAGATTEKQAWEVFRPA--QLMVKRSPMLIDSAGIEVNASNMNKPADG 188 + +F ++Y ++T KQA +F+ A Q+ + RS +V +++ Sbjct: 117 LFGQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSS 176 Query: 189 SRFEPIIGNPG--DGASPSCAIVDEYHEHDSAALYETMLTGMGARRQPLMFIITTAGANI 246 S F P+ NP DG P+ AI+DE +Y TGM ++ PL +++TAG N+ Sbjct: 177 SVFAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNL 236 Query: 247 EGPCFDKRRQVIEMLEGTVPDDELFGWIWTIDEGDDWTDPRVLAKANPNIGISVYQDYL- 305 + + + + +L V D F + +D ++ D KA P + ++ + Sbjct: 237 NSQMYQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTIL 296 Query: 306 ---ESQQQRAIKSARFTNTFKTKHLNVWTSAKA-GYFNLEDWKSCEDRSLTLEQFEGQDC 361 ++ Q ++ + K+ N+W + + ++ DW E + G+D Sbjct: 297 QNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDW---EQVITPMPNINGKDV 353 Query: 362 VLALDMARKLDLNSMARLFWHD---IDGRRHYFCVAPRFWVPEDTVRNTENRRMA-ERYQ 417 + +D++R DL S+ +F +D + H F + R + + + R+ N +A ER + Sbjct: 354 YIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSF-IGLRTNLEQKSKRDKINYELAIERGE 412 Query: 418 AWVNQGCLLETDGAEIDYRDILE------EAKDANRLCPVQCTPLDPHGATNLSHQLADE 471 A Q +D IDY+ +++ D N VQ DP A + + Sbjct: 413 AETTQ-----SDSGMIDYKQVIDFIVKFITTHDLN----VQAVCYDPWNAQSFITTIESM 463 Query: 472 GLT--PVTIVQNYTNMSDPMKELEAAITSGRFHHDGNPIMTWCVSNVIGKNLPGNDDVVR 529 L + + Q++ +S +KE + R H+ N ++T V+N + + +D V+ Sbjct: 464 ALDWPLIELGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVL--IRDGEDNVK 521 Query: 530 PIKQGNDNKIDGAVALIMAVGRAMLAD 556 K+ N KID +++I A A + + Sbjct: 522 INKKMNRQKIDPIISIITAFTEARMHE 548 >gi|13389|lcl|protein:vir:1263 Length: 416 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:329 # MgeName: phi-105 # Cross-refs: genbank:acc:NP_690755;genbank:gi:22854995;genbank:GeneID :955207 Length = 416 Score = 149 bits (376), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 119/415 (28%), Positives = 195/415 (46%), Gaps = 33/415 (7%) Query: 32 ACKRHLDDLAASRKKDFRWKFDPEAAERKLALIELLPHTKGEWAFKGQLVTLEPWQKFGL 91 A +R D+ + D + FD EA H +G A GQ + L +Q F Sbjct: 19 AVERFFKDVDRLAEDDCPYYFDAEAVVDFYEWSRQFNHVEGILA--GQPIELTDFQLFIA 76 Query: 92 MATFGWLNKRTGKRRFRESYWEVPRKNGKSVTAAGVGIGMFVLDDEFGAEVYAGATTEKQ 151 +G+ K G RRFR++Y ++ RKN KS A + + + V+ + +Q Sbjct: 77 ANIYGFYKKENGARRFRKAYIQLARKNAKSQFLALIA-SYEIFPTQEKHRVFIAGWSREQ 135 Query: 152 AWEVFRPAQLMVKRSPMLIDSAGIEVNASN-MNKPADGSRFEPIIGNP---GDGASPSCA 207 + EV++ + +P+L G +A+ + K S +P+ GDG +PS Sbjct: 136 SDEVYQAILEQLHHAPIL---KGKYTSANGRVKKYKTNSIIQPLSREARKLGDGKNPSLG 192 Query: 208 IVDEYHEHDSAALYETMLTGMGARRQPLMFIITTAGANIEGPCFDKRRQVIEMLEGTV-- 265 IVDEYH H+++ +Y+ + +GM ARR PLM +ITTAG N+E PCF + + ++L+ + Sbjct: 193 IVDEYHAHETSEIYDVLDSGMVARRSPLMAVITTAGFNMERPCFKEYQYTSKILDPDIDT 252 Query: 266 PDDELFGWIWTIDEGDDWTDPRVLAKANPNIGISVYQDYLESQQ---QRAIKSARFTNTF 322 +D+ F I +D DD D KANP ++ Y + +ES + + A++ +F Sbjct: 253 ENDDYFVMICELDPEDDIKDESNWIKANPI--VATYPEGMESLRSALKVALEVPEKMRSF 310 Query: 323 KTKHLNVWTSAK-AGYFNLEDWKSCEDRSLTLEQFEGQDCVLALDMARKLDLNSMARLFW 381 TK++N W K GY + W++C S + +G L LD++ DL S+ + Sbjct: 311 LTKNMNRWVDQKDNGYMKMTKWRAC---SGEIPDLQGLPVYLGLDLSMTTDLTSVGYVAV 367 Query: 382 HDIDGRRHYFCVAPRFWVPEDTVRNTENRRMAER---YQAWVNQGCLLETDGAEI 433 D +F V ++P+ N +MA Y W G + T G E+ Sbjct: 368 QD-----GFFYVGQHSFMPDARA----NEKMATDKVPYDLWREMGFITYTSGEEL 413 >gi|15101|lcl|protein:vir:3867 Length: 563 # NCBI annotation: putative large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:82 # MgeName: A2 # Cross-refs: genbank:acc:NP_680484;swissprot:trembl:q8ltc3;genbank:gi :22296524;interpro:IPR005021;uniprot:Q8LTC3;genbank:Gene ID:951698 Length = 563 Score = 147 bits (370), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 153/587 (26%), Positives = 256/587 (43%), Gaps = 59/587 (10%) Query: 14 FARDVVRGKRPACRYVQLACKRHLDDLAASRKKDFRWKFDPEAAERKLALIELLPHTKGE 73 F + V+ G+ + V LA KRH +DL ++ D+RW +DP A + + +E+LP K Sbjct: 4 FIKRVLDGRLITSKAVNLAVKRHQEDL---KRTDWRWHYDPNLAGKAVKFMEILPEPKS- 59 Query: 74 WAFKGQLVTLEPWQKFGLMATFGWLNKR-TGKRRFRESYWEVPRKNGKSVTAAGVGIGMF 132 G+ L P+QKF + + +GW++K + RRF + + + RKNGKS+ +GV + F Sbjct: 60 ----GKPQPLAPFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGVILYEF 115 Query: 133 VLDDEFGA------EVYAGATTEKQAWEVFRPAQ----LMVKRSPMLIDSAGIEVNASNM 182 + FG ++Y A KQA VF + ++++ P + +++ + Sbjct: 116 L----FGKNPANKRQLYTAANDRKQAGIVFGMVKDRLRALMRKDPGI--KRMVKITRDEL 169 Query: 183 NKPADGSRFEPIIGNPG--DGASPSCAIVDEYHEHDSAALYETMLTGMGARRQPLMFIIT 240 DGS + G DG P A+VDEY + + ET+ +G L FII+ Sbjct: 170 VNLDDGSTIRSFSRDTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIIS 229 Query: 241 TAGANIEGPCFDKRRQVI-EMLEGTVPDDELFGWIWTIDEGDDWTDPRVLAKANPNIGI- 298 TAG ++ P F + ++L G + F +I D + DP K+NP + + Sbjct: 230 TAGFDMNVPMFQQNYPYAKKVLSGEEKAERYFAFIAEQDNVQEVDDPNSWIKSNPLLDVD 289 Query: 299 ---SVYQDYLESQQQRAIKSARFTNTFKTKHLNVWTSA-KAGYFNLEDWKSCEDRSLTLE 354 S DYL ++ +A N K+ N+W A + Y + + WK+ E LT + Sbjct: 290 TLHSQISDYLTTKLAQARADGSL-NAKLVKNFNIWRQATEDSYLDFDAWKAAE---LTDK 345 Query: 355 -QFEGQDCVLALDMARKLDLNSMARLF----WHDIDGRRHYFCVAPRFWVPEDTVRNTEN 409 GQ + +D+ R DL +++ L W +DG Y VA + + + + Sbjct: 346 PDIRGQRAWIGIDVGRTSDLFAISWLIPQEGWWWLDG---YAFVASKGGIDNKIKTDRID 402 Query: 410 RRMAERYQAWVNQGCLLETDGAEIDYRDILEEAKD--ANRLCPVQCTPLDPH--GATNLS 465 AE++ +G + + ID + E +D VQ DP+ G + Sbjct: 403 YLAAEQH----GEGEISSLESGIIDNDRVYEWLEDFIERNDIDVQGIMYDPYQFGPMLTA 458 Query: 466 HQLADEGLTPVTIVQNYTNMSDPMKELEAAITSGRFHHDGNPIMTWCVSNVIGKNLPGND 525 + V + Q +S P K+ + GR H N IM N + L ++ Sbjct: 459 IEKNHPEWPMVQVRQGTLTLSMPTKQFRDDVIGGRIKHSDNRIMQAAAMNAV---LMSDN 515 Query: 526 DVVRPIKQGNDNKIDGAVALIMAVGRAM---LADRVDSESIYDQGVG 569 + VR K NKID A + A A L + +D + ++ G Sbjct: 516 NGVRINKNKYANKIDMIDATLDAYAIAFKEDLDNYLDDDRVFSDDFG 562 >gi|17436|lcl|protein:vir:4596 Length: 564 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:101 # MgeName: PVL # Cross-refs: genbank:acc:NP_058441;genbank:gi:9635167;genbank:GeneID: 1262735 Length = 564 Score = 146 bits (369), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 134/565 (23%), Positives = 248/565 (43%), Gaps = 48/565 (8%) Query: 13 KFARDVVRGKRPACRYVQLACKRHLDDLAASRKKDFRWKFDPEAAERKLALIELLPHTKG 72 K+A+ VV G+ A CKRHL + W D + + + +E+LP K Sbjct: 7 KYAKKVVSGEILASLKNIQVCKRHLS-FMENPPNGCHW--DNHLSNKAIKFVEMLPDPKT 63 Query: 73 EWAFKGQLVTLEPWQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGKSVTAAGVGIGMF 132 Q + L +QKF + + +GW +R R F ++Y + RK GKS+ +G+ + Sbjct: 64 -----NQPMPLMEFQKFIVGSLYGW--RRGQYRMFTKAYISMARKQGKSLIVSGMSVNEL 116 Query: 133 VLDD--EFGAEVYAGATTEKQAWEVFRPA--QLMVKRSPMLIDSAGIEVNASNMNKPADG 188 + +F ++Y ++T KQA +F+ A Q+ + RS +V +++ Sbjct: 117 LFGQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSS 176 Query: 189 SRFEPIIGNPG--DGASPSCAIVDEYHEHDSAALYETMLTGMGARRQPLMFIITTAGANI 246 S F P+ NP DG P+ AI+DE +Y TGM ++ PL +++TAG N+ Sbjct: 177 SVFAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNL 236 Query: 247 EGPCFDKRRQVIEMLEGTVPDDELFGWIWTIDEGDDWTDPRVLAKANPNIGISVYQDYL- 305 + + + + +L V D F + +D ++ D KA P + ++ + Sbjct: 237 NSQMYQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTIL 296 Query: 306 ---ESQQQRAIKSARFTNTFKTKHLNVWTSAKA-GYFNLEDWKSCEDRSLTLEQFEGQDC 361 ++ Q ++ + K+ N+W + + ++ DW E + G+D Sbjct: 297 QNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDW---EQVITPMPNINGKDV 353 Query: 362 VLALDMARKLDLNSMARLFWHD---IDGRRHYFCVAPRFWVPEDTVRNTENRRMA-ERYQ 417 + +D++R DL S+ +F +D + H F + R + + + R+ N +A ER + Sbjct: 354 YIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSF-IGLRTNLEQKSKRDKINYELAIERGE 412 Query: 418 AWVNQGCLLETDGAEIDYRDILE------EAKDANRLCPVQCTPLDPHGATNLSHQLADE 471 A Q +D ID + +++ D N VQ DP A + + Sbjct: 413 AETTQ-----SDSGMIDSKQVIDFIVKFITTHDLN----VQAVCYDPWNAQSFITTIESM 463 Query: 472 GLT--PVTIVQNYTNMSDPMKELEAAITSGRFHHDGNPIMTWCVSNVIGKNLPGNDDVVR 529 L + + Q++ +S +KE + R H+ N ++T V+N + + +D V+ Sbjct: 464 ALDWPLIEVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVL--IRDGEDNVK 521 Query: 530 PIKQGNDNKIDGAVALIMAVGRAML 554 K+ N KID +++I A A + Sbjct: 522 INKKMNRQKIDPIISIITAFTEARM 546 >gi|14327|lcl|protein:vir:9358 Length: 453 # NCBI annotation: terminase-large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:166 # MgeName: phi 12 # Cross-refs: genbank:acc:NP_803336;genbank:gi:29028647;genbank:GeneID :1258090 Length = 453 Score = 142 bits (357), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 120/435 (27%), Positives = 198/435 (45%), Gaps = 17/435 (3%) Query: 116 RKNGKSVTAAGVGIGMFVLDDEFGAEVYAGATTEKQAWEVFRPAQLMVKRSPMLIDSAGI 175 RKNGK+ T +GV D E GAE++ A KQA +F ++ M+K SP L Sbjct: 3 RKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQARILFDESKAMIKASPKL--RENF 60 Query: 176 EVNASNMNKPADGSRFEPIIGNPG--DGASPSCAIVDEYHEHDSAALYETMLTGMGARRQ 233 ++ A S+ P + DG + I DE HE L + AR Q Sbjct: 61 RPLRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQ 120 Query: 234 PLMFIITTAGANIEGPCFDKRRQVIEMLEGTVPDDELFGWIWTIDEGDDWTDPRVLAKAN 293 PL+ ITTAG ++GP + + L+ + D+ F ++ ++D+ DD D KAN Sbjct: 121 PLLIYITTAGYQLDGPLVNMVEAGRDTLDRIIEDERTFYYLASLDDDDDINDSSNWIKAN 180 Query: 294 PNIGISVYQDYLESQQQRAIKSARFTNTFKTKHLNVWTSAKAGYFNLEDWKSCEDRS--L 351 PN+G+S+ ++ + ++A ++ F TK N++ A + D+ + + + + Sbjct: 181 PNLGVSIDLAEMKEEWEKAKRTPDERGDFITKRFNIF--ANNDEMSFIDYPTLQKNNDII 238 Query: 352 TLEQFEGQDCVLALDMARKLDLNSMARLFWHDIDGRRHYFCVAPRFWVPEDTVRNTENRR 411 +L++ EG+ C + D++ D + F D +G+ V W+P+ V + N + Sbjct: 239 SLDELEGRPCTIGYDLSETEDFTAACATFALD-NGK---VAVLTHSWIPKHKVEYS-NEK 293 Query: 412 MAERYQAWVNQGCLLETDGAEIDYRDILEEAKDANRLCPVQCTPLDPHGATNLSHQLADE 471 + Y W G L D IDY+D+L N V+ D A L+ +L + Sbjct: 294 IP--YIEWEEDGLLTIQDNPYIDYQDVLNWIIKMNEHYVVEKITYDRANAFKLNQELKNY 351 Query: 472 GLTPVTIVQNYTNMSDPMKELEAAITSGRFHHDGNPIMTWCVSNVIGKNLPGNDDVVRPI 531 G Q +S +K+L+ G+ + NP+M W ++NV K L N + + P Sbjct: 352 GFETEETRQGALTLSPALKDLKEMFLDGKIIFNNNPLMKWYINNVQLK-LDRNGNWL-PS 409 Query: 532 KQGNDNKIDGAVALI 546 KQ KIDG A + Sbjct: 410 KQSRYRKIDGFAAFL 424 >gi|3559|lcl|protein:vir:101786 Length: 556 # NCBI annotation: gp9 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1515 # MgeName: 244 # Cross-refs: genbank:acc:YP_654764;genbank:gi:109302762;genbank:GeneI D:4156221 Length = 556 Score = 142 bits (357), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 137/538 (25%), Positives = 229/538 (42%), Gaps = 35/538 (6%) Query: 54 PEAAERKLALIELLPHTKGEWAFKGQLVTLEPWQKFGLM-ATFGWLNKR----TGKRRFR 108 P A + + E+L HTKG++ K LE WQ+ ++ FG + KRR+ Sbjct: 23 PRANKAQAFFEEILVHTKGQYTRKK--FILEDWQRDDIVRPLFGRVEYSDEFGCYKRRYE 80 Query: 109 ESYWEVPRKNGKSVTAAGVGIGMFVLDDEFGAEVYAGATTEKQAWEVFRPAQLMVKRSPM 168 ++ E+ RKNGK+ AG+ + + V D E E+Y A +KQA F A MVK SP+ Sbjct: 81 IAWIELARKNGKTELLAGIMLYLLVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPI 140 Query: 169 LIDSAGIEVNASNMNKPADGSRFEPIIGNPGD--GASPSCAIVDEYHEHDSAALYETMLT 226 L + + S ++ I + G++PS DE +++++ T Sbjct: 141 LSKRLKVVDYKKRIYDAKTNSFYDVIAADAKSALGSNPSGCGADEILAWQDGGMWDSLRT 200 Query: 227 GM--GARRQPLMFIITTAGANIEGPCFDKRRQVIEMLEGTVPDDELFGWIW-----TIDE 279 GM GAR QPLM TTAG + EG K R++ ++E PD+ F I+ T E Sbjct: 201 GMGSGARVQPLMVASTTAGNDTEGFAGLKHREMERVMED--PDNPDFKHIFVYMRNTPME 258 Query: 280 GDDWTDPRVLAKANPNIGISVYQDYLESQQQRAIKSARFTNTFKTKHLNVWTSAKAGYFN 339 D W + ANP +G + + + Q A + F+ LN W ++ + Sbjct: 259 EDPWNE-ECWPHANPALGRFLSWEAMRKQAAEARNNPIAEMAFRQFKLNQWQNSTIRWMR 317 Query: 340 LEDWKSCEDRSLT-----LEQFEGQDCVLALDMARKLDLNSMARLFWHDIDGRRHYFCVA 394 + W C+ + F GQ C LD+A + DL S+ LF DG Sbjct: 318 MPAWDECKGTVFKSNKDLFDAFAGQSCWFGLDLAARRDLCSICYLFPQS-DGSVDLLW-- 374 Query: 395 PRFWVPEDTVRNTENRRMAERYQAWVNQGCLLETDGAEIDYRDILEEAKDANRLCPVQCT 454 R W+PE + + + +V G L T+G +D+ + ++ + ++ + Sbjct: 375 -RHWIPESALAKLDRLNDGRFAKEFVPGGWLKVTEGDVLDFDVVYDDIEADSKRFTILGG 433 Query: 455 PLDPHGATNLSHQLADEGLTPVTIV---QNYTNMSDPMKELEAAITSGRFHHDGNPIMTW 511 D + + ++ I ++ +MSD M + + H GNP+ + Sbjct: 434 DADQWSSDPVIQEIEKRTYLYEDIFAYKNDFAHMSDSMHRIFEWTLAKNLRHHGNPLARF 493 Query: 512 CVSNVIGKNLPGNDDVVRPIKQGND---NKIDGAVALIMAVGRAMLADRVDSESIYDQ 566 C S + + +++RP K D +ID +MA A D +S+Y++ Sbjct: 494 CFSACEARVAAYDPNLIRPDKPDRDMAAKRIDAVPTAVMATN-AFYTRGNDYDSVYEE 550 >gi|16631|lcl|protein:vir:9699 Length: 584 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:174 # MgeName: 315.2 # Cross-refs: genbank:acc:NP_795461;genbank:gi:28876230;genbank:GeneID :1257775 Length = 584 Score = 137 bits (346), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 138/563 (24%), Positives = 247/563 (43%), Gaps = 60/563 (10%) Query: 9 EQGLKFARDVVRGKRPACRYVQLACKRHLDDLAASRKKDFRWKFDPEAAERKLALIELLP 68 + +A+ VV + + + V AC RHL+DL +DF++ + PE A + IE+LP Sbjct: 16 DDAFYYAKMVVDEQIKSSKKVFKACLRHLNDLKRIDDEDFKFVYLPEKAADPINFIEILP 75 Query: 69 HTKGEWAFKGQLVTLEPWQKFGLMATFGWLNKRTGK-RRFRESYWEVPRKNGKSVTAAGV 127 K G+ L +QKF + +GW K RRFR++ V RKNGK++ AG+ Sbjct: 76 DVK-----TGKPYPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGKTILIAGI 130 Query: 128 GIGMFVL--DDEFGAEVYAGA---TTEKQAWEVFRPAQLMVKRSPMLIDSAGIEVNASNM 182 + F+ + +++ A T K AW++ + QL R+ + ++ + Sbjct: 131 LLYEFLFGHNPSMSRQLFCTANDRTQAKIAWDMAK-KQLSSLRAKDVDVRKATKIVRDEL 189 Query: 183 NKPADGSRFEPIIGNPG--DGASPSCAIVDEYHEHDSAALYETMLTGMGARRQPLMFIIT 240 D S + + G DG P ++DE+ + + E + +G G P + II+ Sbjct: 190 KNLHDESYIRALSRDTGAVDGFEPYVGVLDEFAASKTNEMLELLESGQGQLDNPFILIIS 249 Query: 241 TAGANIEGPCFDKRRQVI-EMLEGTVPDDELFGWIWTIDEGDDWTDPRVLAKANPNIGIS 299 TAG ++ P I ++L+G + D+ FG++ D ++ D K+NP + + Sbjct: 250 TAGMDLNVPMHTIEYPYITKILDGEITDEGYFGYVAEQDNEEEIKDESNWIKSNPILEVE 309 Query: 300 VYQ----DYLESQQQRAIKSARFTNTFKTKHLNVW-TSAKAGYFNLEDWKSCEDRSLTLE 354 DYL ++++ ++++ N K+ N+W S++ Y + + W+ L Sbjct: 310 ALHDKLMDYLRTRRRVSLETGEI-NKVLIKNFNMWRQSSEESYIDKQSWE--------LA 360 Query: 355 QFEGQDCV-----LALDMARKLDLNSMARLFWHDIDGRRHYFCVAPRFWVPEDTVRNTEN 409 Q + D L +D+ R DL +++ + D Y+ + +V + Sbjct: 361 QIDKPDTYKRRVWLGVDVGRVSDLFAISSVIMMD-----DYWYLDSFSFVATKYGLTAKE 415 Query: 410 RRMAERYQAWVNQG-CLLET-DGAEIDYRDILEEAK--------DANRLC--PVQCTPLD 457 +R Y QG C + T + ID +LE+ + + N +C P Q L Sbjct: 416 KRDGVSYSNLERQGYCEITTLESGVIDDERVLEKIEEMVYTNEWEVNGICFDPYQFGTL- 474 Query: 458 PHGATNLSHQLADEGLTPVTIVQNYTNMSDPMKELEAAITSGRFHHDGNPIMTWCVSNVI 517 T + + + L V+ NM P K+ + G+ H GNP++T V+N Sbjct: 475 ---LTMIEKRHPEWPLIEVSQTTMVLNM--PTKQFRDDLKKGKIKHSGNPLLTMAVNNAY 529 Query: 518 GKNLPGNDDVVRPIKQGNDNKID 540 K +++ +R K N NKID Sbjct: 530 IKT---DNNGMRIDKNKNSNKID 549 >gi|17547|lcl|protein:vir:959 Length: 592 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:19 # MgeName: bIL285 # Cross-refs: genbank:acc:NP_076613;genbank:gi:13095721;genbank:GeneID :920277 Length = 592 Score = 124 bits (311), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 134/584 (22%), Positives = 248/584 (42%), Gaps = 47/584 (8%) Query: 9 EQGLKFARDVVRGKRPACRYVQLACKRHLDDLAASRKKDFRWKFDPEAAERKLALIE-LL 67 E +++++DV+ G A + A +R LDDL + + W F + + LIE + Sbjct: 8 ETAIQWSKDVISGNTLANIEQKQAAQRFLDDLESDK-----WDFKHHQFDFVIGLIEGTI 62 Query: 68 PHTKGE----WAFKGQLVTLEPWQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGKSVT 123 H +GE +FK + L+PWQKF + FG+ K T RRF E+ +PRK GK+ Sbjct: 63 VHVQGENKEGKSFKDTPMYLQPWQKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKTAF 122 Query: 124 AAGVGIGMFVLDDEFGAEVYAGATTEKQAWEVFRPAQLMVKRSPMLIDSAGIEVNASNMN 183 AA + ++D G++ Y A + KQ E F V++ + I N + Sbjct: 123 AASLTWAKNIVDRASGSKTYIVANSLKQTQESFGFLTYNVEKIRNDVKKMRIRDNNQEHS 182 Query: 184 KPAD-GSRFEPIIG-----NPGDGASPSCAIVDEYH--EHDSAALYETMLTGMGARRQPL 235 D G + I + D + + I+DE H + A Y M A R L Sbjct: 183 VHVDFGDGYCDIFAIANQDDKLDSLNGNALILDEIHSWKKAGAKKYILMKNSQKAYRNKL 242 Query: 236 MFIITTAGANIEGPCFDKRRQVIEMLEGTVPD---DELFGWIWTIDEGDDWT-------- 284 + I+TAG G + + ++L GT+ D D F ++ T ++ + Sbjct: 243 LMGISTAGDIANGFLAQRVTTLKKVLSGTIKDKAYDSYFIFLCTAEQDEKGNIINPVTRE 302 Query: 285 -----DPRVLAKANPNIGISVYQDYLESQQQRAIKSARFTNTFKTKHLNVWTSAKAGYFN 339 DP VLA P++ ++V D L ++ ++A+ + F K LN++T++ YF+ Sbjct: 303 ITTIDDPEVLASVTPSLDVTVTLDDLITEARQALLEPQLKAEFLNKSLNIFTNSMDAYFD 362 Query: 340 LEDWK-SCEDRSLTLEQFEGQDCVL--ALDMARKLDLNSMARLFWHDIDGRRHYFCVAPR 396 +++++ S + S T+E+ D+++ DL + A ++ G+ + Sbjct: 363 IDEFRFSNKQHSWTMEELSKLPITWYGGADLSKMHDLTASALYGNYEYKGKSIDIVITHA 422 Query: 397 FWVPEDTVRNTENRRMAERYQAWVNQGCLLETDGAEIDYRDILE---EAKDANRLCPVQC 453 F+ + + + W +G ++ + Y DI++ E +D + ++ Sbjct: 423 FFPKSRAIEKAQEDDIP--LFEWQEEGWATLSNTETVLYDDIVKWFMEMRD--KGFKIKS 478 Query: 454 TPLDPHGATNLSHQLADEGLTPVTIVQNYTNMSDPMKELEAAITSGRFHHDGNPIMTWCV 513 D + + V Q + S+ + +E + ++ N +CV Sbjct: 479 VHFDKKFGREFFMMMKKQKFKMVDAPQQFWKKSEGFRRIEFKAKNKELYYVNNMAYEYCV 538 Query: 514 SNVIGKNLPGNDDVVRPIKQGNDNKIDGAVALIMAVGRAMLADR 557 +NV K + DD ++ K + +ID A + A R ML ++ Sbjct: 539 ANV--KAIEKTDDAIQFEKVMPNQRIDLFDASVFA-SRGMLEEK 579 >gi|19384|lcl|protein:vir:7851 Length: 887 # NCBI annotation: gp8 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:150 # MgeName: CJW1 # Cross-refs: genbank:acc:NP_817458;genbank:gi:29565887;genbank:GeneID :1259165 Length = 887 Score = 115 bits (287), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 117/475 (24%), Positives = 195/475 (41%), Gaps = 35/475 (7%) Query: 119 GKSVTA-------AGVGIGMFVLDDEFGAEVYAGATTEKQAWEVFRPAQLMVKRSPMLID 171 GKS+T AG+ + + V D E E+Y A +KQA F A MVK SP+L Sbjct: 415 GKSLTPTHNTELLAGIMLYLLVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSK 474 Query: 172 SAGIEVNASNMNKPADGSRFEPIIGNPGD--GASPSCAIVDEYHEHDSAALYETMLTGM- 228 + + S ++ I + G++PS DE +++++ TGM Sbjct: 475 RLKVVDYKKRIYDAKTNSFYDVIAADAKSALGSNPSGCGADEILAWQDGGMWDSLRTGMG 534 Query: 229 -GARRQPLMFIITTAGANIEGPCFDKRRQVIEMLEGTVPDDELFGWIW-----TIDEGDD 282 GAR QPLM TTAG + EG K R++ ++E PD+ F I+ T E D Sbjct: 535 SGARVQPLMVASTTAGNDTEGFAGLKHREMERVMED--PDNPDFKHIFVYMRNTPMEEDP 592 Query: 283 WTDPRVLAKANPNIGISVYQDYLESQQQRAIKSARFTNTFKTKHLNVWTSAKAGYFNLED 342 W + ANP +G + + + Q A + F+ LN W ++ + + Sbjct: 593 WNE-ECWPHANPALGRFLSWEAMRKQAAEARNNPIAEMAFRQFKLNQWQNSTIRWMRMPA 651 Query: 343 WKSCEDRSLT-----LEQFEGQDCVLALDMARKLDLNSMARLFWHDIDGRRHYFCVAPRF 397 W C+ + F GQ C LD+A + DL S+ LF DG R Sbjct: 652 WDECKGTVFKSNKDLFDAFAGQSCWFGLDLAARRDLCSICYLFPQS-DGSVDLLW---RH 707 Query: 398 WVPEDTVRNTENRRMAERYQAWVNQGCLLETDGAEIDYRDILEEAKDANRLCPVQCTPLD 457 W+PE + + + +V G L T+G +D+ + ++ + + + D Sbjct: 708 WIPESALAKLDRLNDGRFAKEFVPGGWLKVTEGDVLDFDVVYDDIEADAKRFTILGGDAD 767 Query: 458 PHGATNLSHQLADEGLTPVTIV---QNYTNMSDPMKELEAAITSGRFHHDGNPIMTWCVS 514 + + ++ I ++ +MSD M + + H GNP+ +C S Sbjct: 768 QWSSDPVIQEIEKRTYLYEDIFAYKNDFAHMSDSMHRIFEWTLAKNLRHHGNPLARFCFS 827 Query: 515 NVIGKNLPGNDDVVRPIKQGND---NKIDGAVALIMAVGRAMLADRVDSESIYDQ 566 + + +++RP K D +ID +MA A D +S+Y++ Sbjct: 828 ACEARVAAYDPNLIRPDKPDRDMAAKRIDAVPTAVMATN-AFYTRGNDYDSVYEE 881 Score = 33.1 bits (74), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 7/74 (9%) Query: 54 PEAAERKLALIELLPHTKGEWAFKGQLVTLEPWQKFGLM-ATFGWLNKR----TGKRRFR 108 P A + + E+L HTKG++ K + LE WQ+ ++ FG + KRR+ Sbjct: 23 PRANKAQAFFEEILVHTKGQYTRKKFI--LEDWQRDDIVRPLFGRVEYSDEFGCYKRRYE 80 Query: 109 ESYWEVPRKNGKSV 122 ++ E+ RKNGK++ Sbjct: 81 IAWIELARKNGKAL 94 >gi|15611|lcl|protein:vir:188 Length: 504 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:6 # MgeName: HK97 # Cross-refs: genbank:acc:NP_037698;genbank:gi:9634166;genbank:GeneID: 1262528 Length = 504 Score = 113 bits (283), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 133/535 (24%), Positives = 220/535 (41%), Gaps = 96/535 (17%) Query: 58 ERKLALIE---LLPHTKGEWAFKGQLVTLEPWQKFGLMATFGWLNKRTGKRRFRESYWEV 114 ER +A IE ++P K GQ + L+P+QK ++A + + G + + Sbjct: 5 ERVIAFIERFCIVPEGK----LIGQPMRLDPFQKDFILAVY---DNPAGTDM---AILSI 54 Query: 115 PRKNGKSVTAAGVGIGMFVLDDEF-GAEVYAGATTEKQAWEVFRPAQLMVKRSPMLIDSA 173 RKNGK+ AG+ + V + ++ +GA + +QA VF A MV +P L + Sbjct: 55 ARKNGKTGLIAGILLAHLVGPEAVQNTQIVSGALSREQAAIVFNLAVKMVNLNPKLQEIV 114 Query: 174 GIEVNASNMNKPADGSRFEPII--GNPGDGASPSCAIVDEYHEHDSAA--LYETMLTGMG 229 I + + ++ + G G SP AI+DE + + + T G Sbjct: 115 HITPSGKKLIGLPCNVEYKALSAEGKTTHGLSPILAILDETGQVRGPQDDFIDAITTAQG 174 Query: 230 ARRQPLMFIITTAGANIEGPCFDKRRQVIEMLEGTVPDDELFGWIWTIDEGDDWTDPRVL 289 A PL+ +I+T AN D +L IW ID+ DP ++ Sbjct: 175 AHENPLLIVISTQAAN---------------------DADLLS-IW-IDDAVKSKDPHIV 211 Query: 290 AK------------------ANPNIGISVYQDYLESQQQRAIKSARFTNTFKTKHLNVWT 331 ANP +G + + Q ++A + F NTF+ +LN Sbjct: 212 CHVYEAPKDADISKRESWLAANPALGTFRSEKDMARQAEKAGRMPSFENTFRNLNLNQRV 271 Query: 332 SAKAGYFNLEDWKSCEDRSLTLEQ--FEGQDCVLALDMARKLDLNSMARLFWHDIDGRRH 389 S + + + W+ C + + + + G LD++ + DL ++ D DG Sbjct: 272 STVSPFISRSVWELCGEMPINTPRKWYAG------LDLSARNDLTALVIAGEAD-DGVWD 324 Query: 390 YFCVAPRFWVPEDTVRNTENRRMAER--YQAWVNQGCLLETDGAEIDYRDILEEAKDANR 447 F P FW P+ T+ E R +R Y WV +G L T GA +DY ++ + + Sbjct: 325 VF---PFFWTPQKTL---EERTKTDRAPYDVWVREGLLRTTPGASVDYSFVVADIAEIIG 378 Query: 448 LCPVQCTPLD---------PHGATNLSHQLADEGLTPVTIVQNYTNMSDPMKELEAAITS 498 + D A LS L + G Q + +M + LE+ + + Sbjct: 379 DFDLTSMAFDRWRIDQFRKDADAIGLSLPLVEFG-------QGFKDMGPAVDTLESLMLN 431 Query: 499 GRFHHDGNPIMTWCVSN-VIGKNLPGNDDVVRPIKQGNDNKIDGAVALIMAVGRA 552 GR H +P++T C N V+ K+ GN + + G +IDG VA+ M+VG A Sbjct: 432 GRVRHGMHPVLTMCAVNAVVVKDAAGNRKLDKSKATG---RIDGMVAMTMSVGAA 483 >gi|16408|lcl|protein:vir:1883 Length: 504 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:41 # MgeName: HK022 # Cross-refs: genbank:acc:NP_037663;genbank:gi:9634121;genbank:GeneID: 1262500 Length = 504 Score = 110 bits (275), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 132/535 (24%), Positives = 219/535 (40%), Gaps = 96/535 (17%) Query: 58 ERKLALIE---LLPHTKGEWAFKGQLVTLEPWQKFGLMATFGWLNKRTGKRRFRESYWEV 114 ER +A IE ++P K GQ + L+ +QK ++A + + G + + Sbjct: 5 ERVIAFIERFCIVPEGK----LIGQPMRLDTFQKEFILAVY---DNPAGTDM---AILSI 54 Query: 115 PRKNGKSVTAAGVGIGMFVLDDEF-GAEVYAGATTEKQAWEVFRPAQLMVKRSPMLIDSA 173 RKNGK+ AG+ + V + ++ +GA + +QA VF A MV +P L + Sbjct: 55 ARKNGKTGLIAGILLAHLVGPEAVQNTQIVSGALSREQAAIVFNLAVKMVNLNPKLQEIV 114 Query: 174 GIEVNASNMNKPADGSRFEPII--GNPGDGASPSCAIVDEYHEHDSAA--LYETMLTGMG 229 I + + ++ + G G SP AI+DE + + + T G Sbjct: 115 HITPSGKKLIGLPCNVEYKALSAEGKTTHGLSPILAILDETGQVRGPQDDFIDAITTAQG 174 Query: 230 ARRQPLMFIITTAGANIEGPCFDKRRQVIEMLEGTVPDDELFGWIWTIDEGDDWTDPRVL 289 A PL+ +I+T AN D +L IW ID+ DP ++ Sbjct: 175 AHENPLLIVISTQAAN---------------------DADLLS-IW-IDDAVKSKDPHIV 211 Query: 290 AK------------------ANPNIGISVYQDYLESQQQRAIKSARFTNTFKTKHLNVWT 331 ANP +G + + Q ++A + F NTF+ +LN Sbjct: 212 CHVYEAPKDADISKRESWLAANPALGTFRSEKDMARQAEKAGRMPSFENTFRNLNLNQRV 271 Query: 332 SAKAGYFNLEDWKSCEDRSLTLEQ--FEGQDCVLALDMARKLDLNSMARLFWHDIDGRRH 389 S + + + W+ C + + + + G LD++ + DL ++ D DG Sbjct: 272 STVSPFISRSVWELCGEMPINTPRKWYAG------LDLSARNDLTALVIAGEAD-DGVWD 324 Query: 390 YFCVAPRFWVPEDTVRNTENRRMAER--YQAWVNQGCLLETDGAEIDYRDILEEAKDANR 447 F P FW P+ T+ E R +R Y WV +G L T GA +DY ++ + + Sbjct: 325 VF---PFFWTPQKTL---EERTKTDRAPYDVWVREGLLRTTPGASVDYSFVVADIAEIIG 378 Query: 448 LCPVQCTPLD---------PHGATNLSHQLADEGLTPVTIVQNYTNMSDPMKELEAAITS 498 + D A LS L + G Q + +M + LE+ + + Sbjct: 379 DFDLTSIAFDRWRIDQFRKDADAIGLSLPLVEFG-------QGFKDMGPAVDTLESLMLN 431 Query: 499 GRFHHDGNPIMTWCVSN-VIGKNLPGNDDVVRPIKQGNDNKIDGAVALIMAVGRA 552 GR H +P++T C N V+ K+ GN + + G +IDG VA+ M+VG A Sbjct: 432 GRVRHGMHPVLTMCAVNAVVVKDAAGNRKLDKSKATG---RIDGMVAMTMSVGAA 483 >gi|15774|lcl|protein:vir:6239 Length: 527 # NCBI annotation: gp33 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:131 # MgeName: phi-BT1 # Cross-refs: genbank:acc:NP_813693;swissprot:trembl:q859c4;genbank:gi :29366753;interpro:IPR005021;uniprot:Q859C4;genbank:Gene ID:1258893 Length = 527 Score = 99.0 bits (245), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 130/509 (25%), Positives = 197/509 (38%), Gaps = 52/509 (10%) Query: 54 PEAAERKLALIELLPHTKGEWAFKGQLVTLEPWQKFGLMATFGWLNKRTGK--RRFRESY 111 P R IE + G +F GQ L PWQ+ L+ + G+ R+ R Sbjct: 25 PSEGYRVAKWIEEFCYLTG--SFAGQPFRLLPWQRTLLIDAYELTQDTFGRWRRKHRTVV 82 Query: 112 WEVPRKNGKSVTAAGVGIGMFVLD-DEFGAEVYAGATTEKQAWEVFRPAQLMVKRSPMLI 170 V RKNGKS AA + + + D + +V A A QA VF A+ MV SP L Sbjct: 83 VCVARKNGKSTIAAAIMLYHLIADRGDAQRQVIAAANDRNQARMVFDSAKQMVNASPKL- 141 Query: 171 DSAGIEVNASNMNKPADGSRFEPIIGNPGDGASPSCAIVDEYHEHDSAALYETMLTGMGA 230 +A V + + R G +P+ +DEY S+ L++ + G A Sbjct: 142 -AAVCNVQRDVIRYKDNTYRVVSADAGRQQGLNPAAVSLDEYAFSKSSDLFDALTLGSAA 200 Query: 231 RRQPLMFIITTAGANIEGPCFDKRRQVIEMLEGTVPDDELF--GWIWTIDEGDDWTDPRV 288 R QP+ II+TAG + +GP Q + G D LF W + E D DP V Sbjct: 201 RNQPMFLIISTAGPDPDGPFAALCEQGERVNSGEADDPTLFYRSWGPKLGETVDHLDPEV 260 Query: 289 LAKANPNIGISVYQDYLESQQQRAIKSARFTNTFKTKHLNVWTSAKAGYFNLEDWKS-CE 347 A+ NP+ I + D ++ QR+ ++ +F+ L+ + + + W S Sbjct: 261 WARCNPSYDI-LNPDDFKAAAQRSTEA-----SFRIYRLSQFVRGASTWLPHGLWDSLAA 314 Query: 348 DRSLTLEQFEGQDCVLALDMARKLDLNSMARLFWHDIDGRRHYFCVAPRFWVPEDTVRNT 407 D LE G + V D + K D ++ D+ V + P D + Sbjct: 315 DDDDPLE--PGDEVVCGFDGSWKGDSTALVACRVRDL-----RVFVLGHWEAPADDIH-- 365 Query: 408 ENRRMAERYQAWVNQGCLLETDGAEIDYRDILEEAKDANRLCPVQCTPLDPHGATNLSHQ 467 W D R+ L A D R V+ DP+ Sbjct: 366 -----------WRVPMA---------DVREALHSALDTYR---VRNLVADPYRWEETLDN 402 Query: 468 LADEGLTPVTI--VQNYTNMSDPMKELEAAITSGRFHHDGNPIMTWCVSNVIGKNLPGND 525 L EG PV + M + + A GR HDGNP + + N + K Sbjct: 403 LEAEGF-PVEAFPTNSLARMVPATQAVYDACRDGRLSHDGNPALARHIGNAVLKEDARGA 461 Query: 526 DVVRPIKQGNDNKIDGAVALIMAVGRAML 554 + + + KID AVA+++AV A++ Sbjct: 462 RITKEFG-ASRRKIDLAVAMVLAVWGAVM 489 >gi|17903|lcl|protein:vir:1080 Length: 604 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:21 # MgeName: bIL309 # Cross-refs: genbank:acc:NP_076734;genbank:gi:13095844;genbank:GeneID :920385 Length = 604 Score = 96.7 bits (239), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 133/573 (23%), Positives = 231/573 (40%), Gaps = 58/573 (10%) Query: 11 GLKFARDVVRGKRPACRYVQLACKRHLDDLAASRKKD-FRWKFDPEAAERKLALIELLPH 69 L +A V+ G + ++ ACKRH+DDL K D F + +D E A++ + LL Sbjct: 16 ALSYAIGVLDGTIISGEKIKQACKRHIDDLRRIDKDDAFIYIYDSEQAKKIVEFSTLLKD 75 Query: 70 TKGEWAFKGQLVTLEPWQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGKSVTAAGVGI 129 G+ P+QKF L + GW N T RF+ + + R NGK+ A + Sbjct: 76 VTS-----GEPFEASPYQKFILASVQGWRNPETKGMRFKTIFISMARTNGKTQVLATYAL 130 Query: 130 GMFVLDDEFGA----------EVYAGATTEKQAWEVFRPAQLMVKRSPMLIDSAGIEVNA 179 F+ FG+ + T + F QL L + I N+ Sbjct: 131 YNFL----FGSPKINRQLAVSSIDIAHTHNLFNYMRFNWIQLKDGVFKKLAKALDINDNS 186 Query: 180 SNMNKPADGSRFEPII--GNPGDGASPSCAIVDEYH--EHDSAALYETMLTGMGARRQPL 235 M + + + G+P D + IVDEYH +M +GM Sbjct: 187 QVMEIKKQSAVMKKLSAQGSPADSDHYTTGIVDEYHLFGQKQRDFISSMTSGMVNNPLAQ 246 Query: 236 MFIITTAGANIEGPCFDKRRQVIEMLEG---TVPDDELFGWIWTIDEGDDWTDPRVLAKA 292 MF I+TAG + P F+ ++ +MLE + + +L IW D D+ K+ Sbjct: 247 MFFISTAGVDPTVPMFEDYKRYSKMLESGDWSSSEKDLV-LIWEQDSEDEAYLIETWPKS 305 Query: 293 NPNIGISVYQDYLES---QQQRAIKSARFTNTFKTKHLNVWTSAKA-GYFNLEDWKSCED 348 NP + I + L ++ ++ S F K++N+W +AK Y L+ +D Sbjct: 306 NPLMEIESMRKNLTEGMITERDSLNSQGRIRDFYVKNMNLWQNAKKNAYLPLD---LVQD 362 Query: 349 RSLTLEQFEGQDCVLALDMARKLDLNSMARLFWHDIDGRRHYFCVAPRFWVP-------- 400 + + G+D + D ++ D S+A +F H G + F + W+P Sbjct: 363 AIVDEFDYFGRDVFIGFDYSQTNDDTSLAFVFPH--SGSK--FHLYQHSWIPIAKAGSIE 418 Query: 401 -EDTVRNTENRRMAERYQAWVNQGCLLETDGAEIDYRDILEEAKDANRLCPVQCTPLDPH 459 ++ N + R + E+ A + + D E+ + + + N L V+ D Sbjct: 419 AKEQRDNIDYRAVQEKGFATITRDRFGLIDEDEV--FNWMLNFIEKNEL-RVKAILYDQW 475 Query: 460 GATNLSHQLAD--EGLTPVTIVQNYTNMSDPMKELEAAITSGRFHH-DGNPIMTWCVSNV 516 G N +L + E + + Q ++++P K L+++ D ++ V+ V Sbjct: 476 GTGNFIRRLDEVKEEYLLIPVRQGIKSLNEPTKFLQSSFIKHNITMLDDQALIQGLVNAV 535 Query: 517 IGKNLPGNDDVVRPIKQGNDNKIDGAVALIMAV 549 + G ++ K N KID A A++ A+ Sbjct: 536 TVSDNNG----IKLDKNVNSQKIDAADAIVNAL 564 >gi|15412|lcl|protein:vir:1325 Length: 519 # NCBI annotation: gp33 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:28 # MgeName: phi-C31 # Cross-refs: genbank:acc:NP_047924;swissprot:trembl:q9t214;genbank:gi :9631142;uniprot:Q9T214;genbank:GeneID:2715903 Length = 519 Score = 94.4 bits (233), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 124/508 (24%), Positives = 194/508 (38%), Gaps = 51/508 (10%) Query: 54 PEAAERKLALIELLPHTKGEWAFKGQLVTLEPWQKFGLMATFGWLNKRTGK--RRFRESY 111 P R IE + G +F GQ L PWQ+ L+ + G+ R+ R Sbjct: 22 PSEGYRVAKWIEEFCYLTG--SFAGQPFRLLPWQRELLIDAYVLTQDTFGRWRRKHRTVV 79 Query: 112 WEVPRKNGKSVTAAGVGIGMFVLD-DEFGAEVYAGATTEKQAWEVFRPAQLMVKRSPMLI 170 V RKNGKS AA + + + D + ++ A A QA VF A+ MV SP L Sbjct: 80 VCVARKNGKSTIAAAIMLYHLIADRGDAQRQIIAAANDRNQARMVFDSAKQMVNASPKL- 138 Query: 171 DSAGIEVNASNMNKPADGSRFEPIIGNPGDGASPSCAIVDEYHEHDSAALYETMLTGMGA 230 +A +V + + R G +P+ +DEY + L++ + G A Sbjct: 139 -AAVCDVQRDVIRYKDNTYRVVSADAGRQQGLNPAAVSLDEYAFSKHSDLFDALTLGSAA 197 Query: 231 RRQPLMFIITTAGANIEGPCFDKRRQVIEMLEGTVPDDELF--GWIWTIDEGDDWTDPRV 288 R QP+ II+TAG + +GP Q + G D LF W + E D DP V Sbjct: 198 RNQPMFLIISTAGPDPDGPFAALCEQGERVNSGEADDPTLFYRSWGPKLGETVDHLDPDV 257 Query: 289 LAKANPNIGISVYQDYLESQQQRAIKSARFTNTFKTKHLNVWTSAKAGYFNLEDWKSCED 348 NP+ I + D ++ QR+ ++ +F+ L+ + + + W S Sbjct: 258 WRACNPSYDI-LNPDDFKAAAQRSTEA-----SFRIYRLSQFVRGASTWLPHGLWDSLAA 311 Query: 349 RSLTLEQFEGQDCVLALDMARKLDLNSMARLFWHDIDGRRHYFCVAPRFWVPEDTVRNTE 408 LE G + VL D + K D ++ D+ V + P D Sbjct: 312 DDDPLE--PGDEVVLGFDGSWKGDSTALVACRIRDLK-----VFVLGHWEAPADDAH--- 361 Query: 409 NRRMAERYQAWVNQGCLLETDGAEIDYRDILEEAKDANRLCPVQCTPLDPHGATNLSHQL 468 W + D+ EE A + V+ DP+ L Sbjct: 362 ----------W------------RVPMADVREELHTALDVYRVRNLVADPYRWEETLDNL 399 Query: 469 ADEGLTPVTI--VQNYTNMSDPMKELEAAITSGRFHHDGNPIMTWCVSNVIGKNLPGNDD 526 +G PV + M + + A GR HDGNP + + N + K Sbjct: 400 EADGF-PVEAFPTNSLARMVPATQAVYDACRDGRLSHDGNPALGRHIGNAVLKEDARGAR 458 Query: 527 VVRPIKQGNDNKIDGAVALIMAVGRAML 554 + + + KID AVA+++AV A++ Sbjct: 459 ITKE-HASSRRKIDLAVAMVLAVHGAVM 485 >gi|19237|lcl|protein:vir:3842 Length: 624 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:322 # MgeName: phi adh # Cross-refs: genbank:acc:NP_050148;swissprot:trembl:q9t1f9;genbank:gi :9633040;uniprot:Q9T1F9;genbank:GeneID:1262205 Length = 624 Score = 85.1 bits (209), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 95/392 (24%), Positives = 159/392 (40%), Gaps = 26/392 (6%) Query: 14 FARDVVRGKRPACRYVQLACKRHLDDLAASRKKDFRWKFDPEAAERKLALIELLPHTKGE 73 +A V+ G + A ++LA RHL DL + DF + +D + A R L ++ P+ Sbjct: 34 YAFSVLNGTKLAGYKIKLASFRHLMDLRRQGQPDFPYHYDVDEANRLLRFAKICPNVD-- 91 Query: 74 WAFKGQLVTLEPWQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGKSVTAAGVGIGMFV 133 G+ L WQ+F FGW +K K RF V R GK+ A + F+ Sbjct: 92 ---TGEPTKLMEWQEFTFALMFGWRDKDNNK-RFTRVIDSVARGQGKTYQMAILVCYSFL 147 Query: 134 LDDE-FGAEVYAGATTE-KQAWEVFRPAQLMVKRSPML--IDSAGIEVNAS------NMN 183 ++ + Y A+ KQ ++F M+++ + S EVN M Sbjct: 148 IESVGLSNQDYLVASINFKQTMKLFGYVASMMRKIIQIEPFKSYANEVNLYIQSDQIIMK 207 Query: 184 KPADGSRFEPIIGNPGDGASPSCAIVDEYHEHDSAALYETMLTGMGARRQPLMFIITTAG 243 K + R + D AI DE E S +++G I+T+ Sbjct: 208 KNNNVLRAISLEAGQYDSYHFRTAIFDEIGEVKSRETVSKIISGQVKVSNHQFIQISTSY 267 Query: 244 ANIEGPCFDKRRQVIEMLEG--TVPDDELFGWIWTIDEGDDWTDPRVLAKANPNIGISVY 301 + P + ++ +I+ +E D G IW+ D D+ P K+NP + + Sbjct: 268 PDPTVPFHEDQKMIIQAMEQDWKRDADSYLGLIWSQDSLDETYKPETWVKSNPLLDLPDQ 327 Query: 302 QDYLESQQQRAIKSARFT---NTFKTKHLNVWTSAKA-GYFNLEDWKSCEDRSLTLEQFE 357 +D L S T + F+TK+LN+W Y NL+D ED + Sbjct: 328 RDNLLKGLTDKRDSDLLTGNISDFQTKNLNLWLKQSTDSYLNLKD---VEDAVYNDFNID 384 Query: 358 GQDCVLALDMARKLDLNSMARLFWHDIDGRRH 389 G + + D + D +++ ++ +D DG+ H Sbjct: 385 GHEVFIGFDYSMFSDNTALSFVYPYD-DGKFH 415 >gi|17207|lcl|protein:vir:7405 Length: 646 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:146 # MgeName: P335 # Cross-refs: genbank:acc:NP_839922;genbank:gi:30089892;genbank:GeneID :1260673 Length = 646 Score = 80.5 bits (197), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 91/391 (23%), Positives = 157/391 (40%), Gaps = 39/391 (9%) Query: 13 KFARDVVRGKRPACRYVQLACKRHLDDLAASRKKDFRWKFDPEAAERKLALIELLPHTKG 72 K+A DV+ K +QLAC RHL DL +DF + ++ + +R + ++ P+ Sbjct: 43 KYAFDVLDEKYTTGYLMQLACFRHLQDLKRIGNEDFPFNYEVKHVKRLMKFSKMAPNVD- 101 Query: 73 EWAFKGQLVTLEP-----WQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGKSVTAAGV 127 T+EP WQKF L GW NK GK RF + V R GK+ A + Sbjct: 102 ---------TMEPTKLMEWQKFMLSLLIGWRNKEGGK-RFSRAIISVGRGQGKTYMLAIL 151 Query: 128 GIGMFVLDDE--FGAEVYAGATTEKQAWEVFRPAQLMVK--RS----PMLIDSAGIEVNA 179 F ++ + + KQ +++ + M+ R+ + D + + A Sbjct: 152 MAYSFFVESRGLSNQDFLVSSINAKQTGKLYGYLKSMINVLRTINPWKNIADKTDLSLQA 211 Query: 180 SNMNKPADGSRFEPIIGNPG--DGASPSCAIVDEYHEHDSAALYETMLTGMGARRQPLMF 237 + + PI G D + AI DE E S +++G Sbjct: 212 DKIIMRNHNNVIRPISHEAGQYDSYHFTTAIFDEIGEVKSREKISKIVSGQVKVPNRQFV 271 Query: 238 IITTAGANIEGPCFDKRRQVIEMLEGTV--PDDELFGWIWTIDEGDDWTDPRVLAKANPN 295 I+TA + P + + + + +E D IW+ D D+ P K+NP Sbjct: 272 QISTAYPDPTVPFHEDEKMLQQAMEQDFLRDADTYLCLIWSNDSLDETYKPETWVKSNPL 331 Query: 296 IGIS-----VYQDYLESQQQRAIKSARFTNTFKTKHLNVWTSAKA-GYFNLEDWKSCEDR 349 + ++ + Q L+ + + A + F+ K+LN+W S+ Y NL D E Sbjct: 332 LDLASEHDNLMQGLLDKRDNDVLTGA--VHDFQCKNLNMWLSSDIDSYLNLAD---VEKA 386 Query: 350 SLTLEQFEGQDCVLALDMARKLDLNSMARLF 380 + GQ C + +D + D ++A ++ Sbjct: 387 IVPEFNIYGQRCYVGVDYSMSSDNTAVAFVY 417 >gi|15731|lcl|protein:vir:4950 Length: 623 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:108 # MgeName: Sfi19 # Cross-refs: genbank:acc:NP_049926;genbank:gi:9632897;genbank:GeneID: 1262073 Length = 623 Score = 79.3 bits (194), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 128/595 (21%), Positives = 226/595 (37%), Gaps = 85/595 (14%) Query: 9 EQGLKFARDVVRGKRPACRYVQLACKRHLDDLAASRKKDFRWKFDPEAAERKLALIELLP 68 + G K+ DV+ G+ A ++LAC RHL DL DF + +D + A R L + P Sbjct: 29 DDGTKYCFDVLEGRITAGYMIKLACFRHLRDLQRQGNDDFPYSYDTDEAARLLRFARICP 88 Query: 69 HTKGEWAFKGQLVTLEPWQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGKS-VTAAGV 127 + G+ L WQKF L FGW N GK RF + V R GK+ + A Sbjct: 89 NVD-----TGEPTKLMAWQKFILCMLFGWRNANGGK-RFSRAIVSVGRGQGKTYLMAILT 142 Query: 128 GIGMFVLDDEFGAEVYAGATTE-KQAWEVFRPAQLMVKR----SPM--LIDSAGIEVNAS 180 F+ + Y + KQ ++ + M+K+ P L + + +++ Sbjct: 143 AYSYFIESLGLSNQDYLVTSINFKQTNKLLGYIKSMMKQIIQNEPFKSLANETELGLHSD 202 Query: 181 NMNKPADGSRFEPIIGNPG--DGASPSCAIVDEYHEHDSAALYETMLTGMGARRQPLMFI 238 + A+ + I G D + AI DE E ++ +++G Sbjct: 203 QVIMKANNNVLRAISAESGQYDSFHFTTAIFDEIGEIETRDAVSKIVSGQVKVPNRQFIQ 262 Query: 239 ITTAGANIEGPCFDKRRQVIEMLE--GTVPDDELFGWIWTIDEGDDWTDPRVLAKANPNI 296 I+TA N P + +R + + +E + D +W+ D ++ P AK+NP + Sbjct: 263 ISTAYPNPSVPFREDQRIMQQAMEDDDSRDADTYLCLVWSQDNLEEVFKPETWAKSNPLL 322 Query: 297 GISVYQDYLESQQQRAIKSARFTNT---FKTKHLNVWTSAKAGYFNLEDWKSCEDRSLTL 353 + ++ L S + F+ K++N W A + F D K E+ + Sbjct: 323 DLEQERENLMKGLMDKRDSDLLSGNIADFQVKNMNCWLLADSNSF--LDLKDIENAVIPE 380 Query: 354 EQFEGQDCVLALDMARKLDLNSMARLFWHDIDGRRHYFCVAPRFWVPEDTVRNTENRRMA 413 G+ + LD + D ++ ++ + + + V ++P Sbjct: 381 FDRRGKRVYVGLDASMFSDNTAIGFVYPYLGEDGSQKWHVEQHSFIP------------- 427 Query: 414 ERYQAWVNQGCL---LETDGAEIDYRDILEEAKDANRLCPVQCTP---LDP--------- 458 W G L +E DG ++YRD+ +A C + P ++P Sbjct: 428 -----WQQAGSLEAKMEQDG--VNYRDL-----EAKGFCTITSHPQGLINPEEVYRWFVD 475 Query: 459 -------------HGATNLSHQL----ADEGLTPVTIVQNYTNMSDPMKELEAAITSGRF 501 + A ++ + ++ L + I Q + + DP K L+ G Sbjct: 476 YVEDNALDVVFFGYDAMMINKIIKALESNTSLPLMPIRQRTSELKDPTKFLQTLFIEGNI 535 Query: 502 HHDGNPIMTWCVSNVIGKNLPGNDDV-VRPIKQGNDNKIDGAVALIMAVGRAMLA 555 + IM + N + K D++ ++ K + KID ALI A M A Sbjct: 536 TRLDDEIMRKALINAVIK----EDNIGIQVDKMKSTYKIDVVDALIDAFYDGMYA 586 >gi|13853|lcl|protein:vir:4826 Length: 625 # NCBI annotation: ORF22 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:105 # MgeName: 7201 # Cross-refs: genbank:acc:NP_038323;genbank:gi:9634649;genbank:GeneID: 1262609 Length = 625 Score = 78.2 bits (191), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 128/598 (21%), Positives = 224/598 (37%), Gaps = 94/598 (15%) Query: 11 GLKFARDVVRGKRPACRYVQLACKRHLDDLAASRKKDFRWKFDPEAAERKLALIELLPHT 70 G ++ DV+ GK A ++LAC RHL DL KDF + + EA R L + L+P+ Sbjct: 32 GTRYCFDVLDGKIVAGYNIRLACFRHLRDLQRQGNKDFPYVYSIEAFNRFLKFLSLVPNV 91 Query: 71 KGEWAFKGQLVTLEP--WQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGKSVTAAGVG 128 LEP WQ F F W + RF + R GK++ AG+ Sbjct: 92 DDLSQ------KLEPMDWQLFIFSQIFAWFD-LDNVPRFSNIIISIARSQGKTMI-AGIC 143 Query: 129 IGMFVLDDEFG---AEVYAGATTEKQAWEVFRPAQLMVKR----SPM--LIDSAGIEVNA 179 + L + G + + T Q ++F + M+ R P L + +++ + Sbjct: 144 LNFSYLIEIIGQSNQDFLVSSLTFDQTMKLFTYVKSMMARIIENEPFKSLAEETQLQLYS 203 Query: 180 SNMNKPADGSRFEPIIGNPG--DGASPSCAIVDEYHEHDSAALYETMLTGMGARRQPLMF 237 + D + I G D A+ DE E + + +G Sbjct: 204 REIKSLLDANTINTISFESGKFDSKHFKLAVADEVGELRTDEGISKITSGQVNTEGSRFI 263 Query: 238 IITTAGANIEGPCFDKRRQVIEMLEGTVP---DDELFGWIWTIDEGDDWTDPRVLAKANP 294 I+T+ + P +++++IE++E DD+L IW+ D ++ P AK+NP Sbjct: 264 EISTSYQTPDVPFHQEQKKLIEIMERDFDRSGDDQL-CLIWSQDNLEEVFKPETWAKSNP 322 Query: 295 NIGISVYQDYLE----SQQQRAIKSARFTNTFKTKHLNVWTSAKAGYFNLEDWKSCEDRS 350 + ++ L S++ + + + + F+ K++N W A + F D E+ Sbjct: 323 LLNHPELKEGLMKGLLSERDKKLLMGKLAD-FQVKNMNCWLLADSNSF--LDLTDIENAV 379 Query: 351 LTLEQFEGQDCVLALDMARKLDLNSMARLFWHDIDGRRHYFCVAPRFWVPEDTVRNTENR 410 + G+ + LD + D ++ ++ + + + V ++P Sbjct: 380 IPEFDIRGKRVYVGLDASMFSDNTAIGFVYPYLGEDGSQKWHVEQHSFIP---------- 429 Query: 411 RMAERYQAWVNQGCL---LETDGAEIDYRDILEEAKDANRLCPVQCTP------------ 455 W G L +E DG ++YRD+ E+ C + P Sbjct: 430 --------WQQAGSLEAKMEQDG--VNYRDLEEKG-----YCTITSHPQGLINPEEVYRW 474 Query: 456 ----------------LDPHGATNLSHQLADEGLTPVT-IVQNYTNMSDPMKELEAAITS 498 D G + + L P+ I Q + + DP K L+ Sbjct: 475 FCDYVEDNALDVVFFGYDAMGVSKIIKALESNTSFPLMPIRQRTSELKDPTKFLQTLFIE 534 Query: 499 GRFHHDGNPIMTWCVSNVIGKNLPGNDDV-VRPIKQGNDNKIDGAVALIMAVGRAMLA 555 G + IM + N + K D++ ++ K + KID ALI A AM A Sbjct: 535 GNITRLDDEIMRKALINAVIK----EDNIGIQVDKMKSTYKIDVVDALIDAFYDAMYA 588 >gi|18188|lcl|protein:vir:4993 Length: 623 # NCBI annotation: putative large subunit terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:109 # MgeName: Sfi21 # Cross-refs: genbank:acc:NP_049967;genbank:gi:9632939;genbank:GeneID: 1262101 Length = 623 Score = 78.2 bits (191), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 88/391 (22%), Positives = 157/391 (40%), Gaps = 31/391 (7%) Query: 9 EQGLKFARDVVRGKRPACRYVQLACKRHLDDLAASRKKDFRWKFDPEAAERKLALIELLP 68 + G K+ D + G+ ++LAC RHL DL DF + +D A++ L + P Sbjct: 29 DDGTKYCFDALEGRIVTGYMIKLACFRHLRDLQRQGNDDFPYTYDTAEADKLLRFARICP 88 Query: 69 HTKGEWAFKGQLVTLEPWQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGKS-----VT 123 + G+ L PWQKF L FGW N GK RF + V R GK+ +T Sbjct: 89 NVD-----TGEPTQLMPWQKFILCMLFGWRNANGGK-RFSRAIVSVGRGQGKTYLMAILT 142 Query: 124 AAGVGIGMFVLDDE-FGAEVYAGATTEKQAWEVFRPAQLMVKRSPM--LIDSAGIEVNAS 180 A I F L ++ + T K + + ++++ P L + + +++ Sbjct: 143 AYSYFIESFGLSNQDYLVTSIKFKQTNKLLGYIKSMMKQIIQKEPFKSLANETELGLHSD 202 Query: 181 NMNKPADGSRFEPIIGNPG--DGASPSCAIVDEYHEHDSAALYETMLTGMGARRQPLMFI 238 + A+ + I G D + AI DE E ++ +++G Sbjct: 203 QVIMKANNNILRAISAESGQYDSFHFTTAIFDEMGEIETRNAVSKIVSGQVKVPNRQFIQ 262 Query: 239 ITTAGANIEGPCFDKRRQVIEMLEGTVPDDE-----LFGWIWTIDEGDDWTDPRVLAKAN 293 I+TA N P R + M + DD +W+ D ++ P K+N Sbjct: 263 ISTAYPN---PSVPFREDQMIMQQAMEDDDNREADTYLCLVWSQDNLEEVFQPETWMKSN 319 Query: 294 PNIGISVYQDYLES----QQQRAIKSARFTNTFKTKHLNVWTSAKAGYFNLEDWKSCEDR 349 P + + +D L ++ + S ++ F+ K++N W A + F D K E+ Sbjct: 320 PLLDLEQERDNLMKGLLDKRDSDLLSGNLSD-FQVKNMNCWLLADSNSF--LDLKDIENA 376 Query: 350 SLTLEQFEGQDCVLALDMARKLDLNSMARLF 380 + +G+ + LD + D ++ ++ Sbjct: 377 VIDDFDIKGKRVYVGLDASMFSDNTALGFVY 407 >gi|830|lcl|protein:vir:93598 Length: 553 # NCBI annotation: putative large subunit terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:157 # MgeName: phi 4795 # Cross-refs: genbank:acc:YP_001449292;genbank:gi:157166040;goa:Q6H9U9 ;interpro:IPR001453;interpro:IPR005021;uniprot:Q6H9U9;ge nbank:GeneID:5580420 Length = 553 Score = 77.8 bits (190), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 101/477 (21%), Positives = 195/477 (40%), Gaps = 25/477 (5%) Query: 91 LMATFGWLNKRTGKRRFRESYWEVPRKNGKSVTAAGVGIGMFVLDDEFGAEVYAGATTEK 150 + A FG + +TG R +E + +P+KN KS AAG+ + +L+ A A T + Sbjct: 65 VAALFGSYDAQTGVRHIKEVFILIPKKNSKSTLAAGIMMTALLLNWRQAAGYTILAPTVE 124 Query: 151 QAWEVFRPAQLMVKRSPMLIDSAGIEVNASNMNKPADGSRFEPIIGNPG--DGASPSCAI 208 A F PA+ MV+R L D ++ + + + + + +P G + Sbjct: 125 VAANAFNPARDMVRRDDDLDDLCQVQTHIRTITHRVTDTTLKVVAADPNTVSGIKSVGTL 184 Query: 209 VDEY----HEHDSAALYETMLTGMGARRQPLMFIITTAGANIEGPCFDKRRQVI-EMLEG 263 +DE ++ + + + G+ +R + + TT F ++ Q ++ +G Sbjct: 185 IDELWLFGKQYKAEDMLREAIGGLASRPEGFVVYTTTQSNEPPAGVFRQKLQYARDVRDG 244 Query: 264 TVPDDELFGWIW-----TIDEGDDWTDPRVLAKANPNIGISVYQDYLESQQQRAIKSARF 318 + D I+ ++ G LA NPN+G SV + +L + ++A ++ Sbjct: 245 KIHDPHFLPVIFEHPPEMVESGAHLLMEN-LAMVNPNLGYSVDEAFLYREYRKAREAGEE 303 Query: 319 T-NTFKTKHLNV--WTSAKAGYFNLEDWKSCEDRSLTLEQFEGQDCVLALDMARKLDLNS 375 F +KH NV + ++ + D+ + R ++L+ + V+ + + L+ Sbjct: 304 AFRGFMSKHANVEIGLALRSDRWTGADFWEQQGRRVSLDDILQRADVVTVGIDGG-GLDD 362 Query: 376 MARLFWHDIDGRRHYFCVAPRFWVPEDTVRNTENRRMAERYQAWVNQGCLLETDGAEIDY 435 + ++ D + W E V + A R+Q +V G + D Sbjct: 363 LLGMYVIGRDRETREWLGWGHAWAHETAV--VRRKSEASRFQDFVACGDMTIVRRVGDDT 420 Query: 436 RDILEEAKDANRLCPVQCTPLDPHGATNLSHQLADEGL---TPVTIVQNYTNMSDPMKEL 492 ++ E + + ++ +DP G + LA+ G+ V I Q + + +K Sbjct: 421 AEVAEYVRRIHEAELLEHIGIDPSGVGQILDSLAEAGIPDGIVVGISQGW-KLGGAIKTT 479 Query: 493 EAAITSGRFHHDGNPIMTWCVSNVIGKNLPGNDDVVRPIKQGNDNKIDGAVALIMAV 549 E + G H G P+M WCV N + P + ++ + KID +AL AV Sbjct: 480 ERKLAEGVLVHGGQPLMAWCVGN--ARVEPKGNAILITKQASGRGKIDPLMALFNAV 534 >gi|14114|lcl|protein:vir:3986 Length: 657 # NCBI annotation: putative large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:319 # MgeName: BK5-T # Cross-refs: genbank:acc:NP_116494;genbank:gi:14251127;genbank:GeneID :921256 Length = 657 Score = 74.7 bits (182), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 128/577 (22%), Positives = 217/577 (37%), Gaps = 54/577 (9%) Query: 11 GLKFARDVVRGKRPACRYVQLACKRHLDDLAASRKKDFRWKFDPEAAERKLALIELLPHT 70 G ++A V+ G + +LA RHL DL ++DF +++ + + L + ++P+ Sbjct: 49 GTRYAFAVLDGITKSGYLTKLAAFRHLRDLQRIGREDFPYRYSKKEIKNLLKVASVVPNV 108 Query: 71 KGEWAFKGQLVTLEPWQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGKSVTAAGVGIG 130 G+ L PWQKF + GW N GK RF + V R GK+ A + + Sbjct: 109 D-----TGEPTELMPWQKFIMCMLIGWRNSEGGK-RFTVAIISVSRGQGKTYILAILMVY 162 Query: 131 MFVLDD--EFGAEVYAGATTEKQAWEVFRPAQLM----VKRSPM--------LIDSAGI- 175 F+ + + + KQ ++F + M +K P L D + + Sbjct: 163 SFLFESLGLSNQDFLVSSINFKQTSKLFGYVKTMLKTVIKIEPFKTIAAETGLTDRSILN 222 Query: 176 -EVNASNMNKPADGSRFEPIIGNPGDGASPSCAIVDEYHEHDSAALYETMLTGMGARRQP 234 EV MN E D + AI DE E + +++G + Sbjct: 223 DEVVMKKMNNKIRAISHE---AGQYDSFHFTTAIFDEIGEVTNREKISKIVSGQVLVKNH 279 Query: 235 LMFIITTAGANIEGPCFDKRRQVIEMLEG--TVPDDELFGWIWTIDEGDDWTDPRVLAKA 292 I+T+ + P ++ + E +E D +W D+ + +P K+ Sbjct: 280 QFVQISTSYPDPSVPFRKDQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFEPETWVKS 339 Query: 293 NPNIGISVYQDYLESQQQRAIKSARFTNT---FKTKHLNVWTSAKA-GYFNLEDWKSCED 348 NP + + +D L S T F+TK+LN+W Y NL D E Sbjct: 340 NPLLELEDKKDILLKGLIDKRNSDLLQGTLHDFQTKNLNMWLQQDVDSYLNLAD---VEK 396 Query: 349 RSLTLEQFEGQDCVLALDMARKLDLNSMARLFWHDIDGRRHYFCVAPRFWVPEDTVRNTE 408 + GQ C + +D + D ++A +F + D + + V +VP + + Sbjct: 397 AIIPEFSIHGQRCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHVEQHSFVPFQRAGSID 456 Query: 409 --------NRRMAERY---QAWVNQGCLLETDGAEIDYRDILEEAKDANRLCPVQCTPLD 457 N R E+Y +Q L+ D Y I+ +D V D Sbjct: 457 AKEKQDGINYRELEKYGFCTVTSHQQGLINDDEV---YEWIVNYIED--NALDVIFFGYD 511 Query: 458 PHGATNLSHQLADE-GLTPVTIVQNYTNMSDPMKELEAAITSGRFHHDGNPIMTWCVSNV 516 G T + L + G I Q + + DP K L+ G + IM + N Sbjct: 512 AMGITKVIQMLMNNTGYNLQPIRQRTSELKDPTKFLQKLFVEGSISRLDDKIMEKSLLNA 571 Query: 517 IGKNLPGNDDVVRPIKQGNDNKIDGAVALIMAVGRAM 553 + L + ++ K+ KID A+I A+ + M Sbjct: 572 V---LREDSIGIQVDKRKATLKIDVVDAIIDALFQGM 605 >gi|14802|lcl|protein:vir:1021 Length: 660 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:20 # MgeName: bIL286 # Cross-refs: genbank:acc:NP_076675;genbank:gi:13095784;genbank:GeneID :920366 Length = 660 Score = 73.6 bits (179), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 128/577 (22%), Positives = 216/577 (37%), Gaps = 54/577 (9%) Query: 11 GLKFARDVVRGKRPACRYVQLACKRHLDDLAASRKKDFRWKFDPEAAERKLALIELLPHT 70 G ++A V+ G + +LA RHL DL ++DF +++ + + L + ++P+ Sbjct: 52 GTRYAFAVLDGITKSGYLTKLAAFRHLRDLQRIGREDFPYRYSKKEIKNLLKVASVVPNV 111 Query: 71 KGEWAFKGQLVTLEPWQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGKSVTAAGVGIG 130 G+ L PWQKF + GW N GK RF + V R GK+ A + + Sbjct: 112 D-----TGEPTELMPWQKFIMCMLIGWRNSEGGK-RFTVAIISVSRGQGKTYILAILMVY 165 Query: 131 MFVLDD--EFGAEVYAGATTEKQAWEVFRPAQLM----VKRSPM--------LIDSAGI- 175 F+ + + + KQ ++F + M +K P L D + + Sbjct: 166 SFLFESLGLSNQDFLVSSINFKQTSKLFGYVKTMLKTVIKIEPFKTIAAETGLTDRSILN 225 Query: 176 -EVNASNMNKPADGSRFEPIIGNPGDGASPSCAIVDEYHEHDSAALYETMLTGMGARRQP 234 EV MN E D + AI DE E + +++G Sbjct: 226 DEVVMKKMNNKIRAISHE---AGQYDSFHFTTAIFDEIGEVTNREKISKIVSGQVMVENH 282 Query: 235 LMFIITTAGANIEGPCFDKRRQVIEMLEG--TVPDDELFGWIWTIDEGDDWTDPRVLAKA 292 I+T+ + P ++ + E +E D +W D+ + +P K+ Sbjct: 283 QFVQISTSYPDPSVPFRKDQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFEPETWVKS 342 Query: 293 NPNIGISVYQDYLESQQQRAIKSARFTNT---FKTKHLNVWTSAKA-GYFNLEDWKSCED 348 NP + + +D L S T F+TK+LN+W Y NL D E Sbjct: 343 NPLLELEDKKDILLKGLIDKRNSDLLQGTLHDFQTKNLNMWLQQDVDSYLNLAD---VEK 399 Query: 349 RSLTLEQFEGQDCVLALDMARKLDLNSMARLFWHDIDGRRHYFCVAPRFWVPEDTVRNTE 408 + GQ C + +D + D ++A +F + D + + V +VP + + Sbjct: 400 AIIPEFSIHGQRCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHVEQHSFVPFQRAGSID 459 Query: 409 --------NRRMAERY---QAWVNQGCLLETDGAEIDYRDILEEAKDANRLCPVQCTPLD 457 N R E+Y +Q L+ D Y I+ +D V D Sbjct: 460 AKEKQDGINYRELEKYGFCTVTSHQQGLINDDEV---YEWIVNYIED--NALDVIFFGYD 514 Query: 458 PHGATNLSHQLADE-GLTPVTIVQNYTNMSDPMKELEAAITSGRFHHDGNPIMTWCVSNV 516 G T + L + G I Q + + DP K L+ G + IM + N Sbjct: 515 AMGITKVIQMLMNNTGYNLQPIRQRTSELKDPTKFLQKLFVEGSISRLDDKIMEKSLLNA 574 Query: 517 IGKNLPGNDDVVRPIKQGNDNKIDGAVALIMAVGRAM 553 + L + ++ K+ KID A+I A+ + M Sbjct: 575 V---LREDSIGIQVDKRKATLKIDVVDAIIDALFQGM 608 >gi|3997|lcl|protein:vir:100199 Length: 629 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1524 # MgeName: phi AT3 # Cross-refs: genbank:acc:YP_025027;genbank:gi:48697260;genbank:GeneID :2948297 Length = 629 Score = 72.8 bits (177), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 106/427 (24%), Positives = 176/427 (41%), Gaps = 62/427 (14%) Query: 11 GLKFARDVV-RGKRPACRYVQLACKRHLDDLAASRKKDFRWKFDPEAAERKLALIELLPH 69 G ++A DV+ K R VQLAC RHL+DL DF ++++ + LLP+ Sbjct: 34 GTRYAYDVMFTNKYMTGRDVQLACIRHLNDLLRIGNDDFPYQYNSDMVNAIEYFSRLLPN 93 Query: 70 ----TKGEWAFKGQLVTLEPWQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGKS-VTA 124 +K FK WQ F L + GW G RF S + R+ GK+ + + Sbjct: 94 PDDTSKKIQPFK--------WQSFILDSLIGWRTIDNGT-RFTTSNISIARQQGKTWLAS 144 Query: 125 AGVGIGMFVLD-DEFGAEVYAGATTEKQAWEVFRPAQLMVKRSPMLIDSA------GIEV 177 + FV+ + ++ + + A ++F L K L D A G+E Sbjct: 145 ILINFYYFVVCWNATSQDLLVASYDSEHATKLFNDVSLQAKTILSLPDFADDARERGVEA 204 Query: 178 NASNM--NKPADGSRFEPIIGNPGDGASPSCAIVDEYHEHDSAALYETM---LTGMGARR 232 + + + R G D + A+ DE AL ET+ +G + Sbjct: 205 QTTQVIAKNTKNTIRKGTSQGGGFDSFHNAIAVYDEIGNL-RPALNETLKQITSGQNGIK 263 Query: 233 QPLMFIITTAGANIEGPCF---DKRRQVIEMLEGTVPDDELFGWIWTIDEGDDWTDPRVL 289 + I+TA +I+ D R IE + D +F I+ D D+ +P Sbjct: 264 NRMFVKISTAYPDIKVKFKNDEDVTRAAIEH-DAVRDADNVFQVIYAQDSEDEVFEPETW 322 Query: 290 AKANPNIGISVYQDYLESQQ------QRAIKSARFTN-------TFKTKHLNVWTSA-KA 335 AK+NPN+ LE Q+ Q+A+ R N TF K LN+W+ + Sbjct: 323 AKSNPNL--------LELQKSKRDNLQKALNQDRNDNEREGTLETFVNKSLNLWSRRFQN 374 Query: 336 GYFNLEDWKSCEDRSLTLEQFE--GQDCVLALDMARKLDLNSMARLFWHDIDGRRHYFCV 393 Y +L++ + RS+ ++ F+ G+D + D ++ D S ++ + D +H F V Sbjct: 375 SYLSLDNIQ----RSI-IDHFDVNGRDVFIGFDGSQTNDNTSFGFIYPY-TDHDKHMFHV 428 Query: 394 APRFWVP 400 ++P Sbjct: 429 QQHSFIP 435 >gi|6465|lcl|protein:vir:101288 Length: 553 # NCBI annotation: phage terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1591 # MgeName: phiNM3 # Cross-refs: genbank:acc:YP_908828;genbank:gi:118725092;genbank:GeneI D:4555859 Length = 553 Score = 72.4 bits (176), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 118/520 (22%), Positives = 199/520 (38%), Gaps = 49/520 (9%) Query: 52 FDPEAAERKLALIELLPHTKGEWAFKGQLVTLEPWQKFGLMATFGWLNKRTGKRRFRESY 111 FD + E + IE +W F TL P+Q+F ++A ++K T + F E Sbjct: 44 FDEQKIEDCIKFIE-------KWYFP----TL-PFQRF-IIANIFLIDKNTDEAFFTEFA 90 Query: 112 WEVPRKNGKSVTAAGVGIGMFVLDDEFGAEVY---AGATTEKQAWEVF---RPAQLMVKR 165 + R GK+ + I F+ G + Y A +E QA F R + KR Sbjct: 91 IFMGRGGGKNGLISA--ISDFLSTPLHGVKEYHISIVANSEDQAKTSFDEIRTVLMDNKR 148 Query: 166 SPM-LIDSAGIEVNASNMNKPADGS--RFEPIIGNPGDGASPSCAIVDEYHEHDSAALYE 222 + A EV+ + + A S R+ DG C I DE H + Sbjct: 149 NKTGKTPKAPYEVSKAKIINRATKSVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVN 208 Query: 223 TMLTGMGARRQPLMFIITTAGANIEGPCFDKRRQVIEMLEGTVPDDELFGWIWTIDEGDD 282 G+G ++ F I+T G EG + ++ +L G V + LF + +D+ + Sbjct: 209 VKRGGLGKKKNRRTFYISTDGFVREGYIDAMKHKIASVLSGKVKNSRLFAFYCKLDDPKE 268 Query: 283 WTDPRVLAKANPNIG--ISVYQDYLESQQQRAIKSARFTNT----FKTKHLNVWTSAKAG 336 D + KANP + +S Y L S + F + F TK +N+ Sbjct: 269 VDDRQTWEKANPMLHKPLSEYAKTLLSTIEEEYNDLPFNRSNKPEFMTKRMNLPEVDLEK 328 Query: 337 YFNLEDWKSCEDRSLTLEQFEGQDCVLALDMARKLDLNSMARLFWHDIDGRRHYFCVAPR 396 + WK + + + Q C+ LD A D S+ LF + D Sbjct: 329 V--IAPWKEILATNREIPNLDNQMCIGGLDFANIRDFASVGLLFRKNDD----------Y 376 Query: 397 FWVPEDTVRN--TENRRMAERYQAWVNQGCLLETDGAEIDYRDILEEAKDANRLCPVQCT 454 W+ VR ++ ++ + W G L D I+ I++ A ++ Sbjct: 377 IWLGHSFVRQGFLDDVKLEPPIKEWEKMGLLTIVDDDVIEIEYIVDWFLKAREKYGLEKV 436 Query: 455 PLDPHGATNLSHQLADEGLTPVTIVQNYTNMSDPMK-ELEAAITSGRFHHDGNPIMTWCV 513 D + + D G+ + +++N + + ++ + NP+M W Sbjct: 437 IADNYRTDIVRRAFEDAGIK-LEVLRNPKAIHGLLAPRIDTMFAKHNVIYGDNPLMRWFT 495 Query: 514 SNVIGKNLP-GNDDVVRPIKQGNDNKIDGAVALIMAVGRA 552 +NV K P GN + ++ K N K DG +A + A+ RA Sbjct: 496 NNVAVKVKPDGNKEYIK--KDENRRKTDGFMAFVHALYRA 533 >gi|18552|lcl|protein:vir:9506 Length: 553 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:170 # MgeName: phiN315 # Cross-refs: genbank:acc:NP_835553;genbank:gi:30043954;genbank:GeneID :1260583 Length = 553 Score = 72.4 bits (176), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 118/520 (22%), Positives = 199/520 (38%), Gaps = 49/520 (9%) Query: 52 FDPEAAERKLALIELLPHTKGEWAFKGQLVTLEPWQKFGLMATFGWLNKRTGKRRFRESY 111 FD + E + IE +W F TL P+Q+F ++A ++K T + F E Sbjct: 44 FDEQKIEDCIKFIE-------KWYFP----TL-PFQRF-IIANIFLIDKNTDEAFFTEFA 90 Query: 112 WEVPRKNGKSVTAAGVGIGMFVLDDEFGAEVY---AGATTEKQAWEVF---RPAQLMVKR 165 + R GK+ + I F+ G + Y A +E QA F R + KR Sbjct: 91 IFMGRGGGKNGLISA--ISDFLSTPLHGVKEYHISIVANSEDQAKTSFDEIRTVLMDNKR 148 Query: 166 SPM-LIDSAGIEVNASNMNKPADGS--RFEPIIGNPGDGASPSCAIVDEYHEHDSAALYE 222 + A EV+ + + A S R+ DG C I DE H + Sbjct: 149 NKTGKTPKAPYEVSKAKIINRATKSVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVN 208 Query: 223 TMLTGMGARRQPLMFIITTAGANIEGPCFDKRRQVIEMLEGTVPDDELFGWIWTIDEGDD 282 G+G ++ F I+T G EG + ++ +L G V + LF + +D+ + Sbjct: 209 VKRGGLGKKKNRRTFYISTDGFVREGYIDAMKHKIASVLSGKVKNSRLFAFYCKLDDPKE 268 Query: 283 WTDPRVLAKANPNIG--ISVYQDYLESQQQRAIKSARFTNT----FKTKHLNVWTSAKAG 336 D + KANP + +S Y L S + F + F TK +N+ Sbjct: 269 VDDRQTWEKANPMLHKPLSEYAKTLLSTIEEEYNDLPFNRSNKPEFMTKRMNLPEVDLEK 328 Query: 337 YFNLEDWKSCEDRSLTLEQFEGQDCVLALDMARKLDLNSMARLFWHDIDGRRHYFCVAPR 396 + WK + + + Q C+ LD A D S+ LF + D Sbjct: 329 V--IAPWKEILATNREIPNLDNQMCIGGLDFANIRDFASVGLLFRKNDD----------Y 376 Query: 397 FWVPEDTVRN--TENRRMAERYQAWVNQGCLLETDGAEIDYRDILEEAKDANRLCPVQCT 454 W+ VR ++ ++ + W G L D I+ I++ A ++ Sbjct: 377 IWLGHSFVRQGFLDDVKLEPPIKEWEKMGLLTIVDDDVIEIEYIVDWFLKAREKYGLEKV 436 Query: 455 PLDPHGATNLSHQLADEGLTPVTIVQNYTNMSDPMK-ELEAAITSGRFHHDGNPIMTWCV 513 D + + D G+ + +++N + + ++ + NP+M W Sbjct: 437 IADNYRTDIVRRAFEDAGIK-LEVLRNPKAIHGLLAPRIDTMFAKHNVIYGDNPLMRWFT 495 Query: 514 SNVIGKNLP-GNDDVVRPIKQGNDNKIDGAVALIMAVGRA 552 +NV K P GN + ++ K N K DG +A + A+ RA Sbjct: 496 NNVAVKVKPDGNKEYIK--KDENRRKTDGFMAFVHALYRA 533 >gi|6615|lcl|protein:vir:95986 Length: 553 # NCBI annotation: ORF005 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1594 # MgeName: 2638A # Cross-refs: genbank:acc:YP_239799;genbank:gi:66395455;genbank:GeneID :5132903 Length = 553 Score = 70.1 bits (170), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 114/498 (22%), Positives = 188/498 (37%), Gaps = 55/498 (11%) Query: 83 LEPWQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGKSVTAAGVGIGMFVLDDEFGAEV 142 ++ +QKF F + T F E + + R GK+ + +G F L G Sbjct: 63 IQDFQKFITCFVFLY-EADTLTPYFSEFFISMARGGGKNGYIST--LGAFFLTPLHGIPK 119 Query: 143 Y---AGATTEKQAWEVFRPAQLMVKRSPMLIDSAGIEVNASNMNKPADGSR--------- 190 Y A +EKQA F+ M I+S + V N P + S+ Sbjct: 120 YNMSVVANSEKQAQVSFQEIYDM-------IESNDLYVRKDKPNNPFNISKVLIEGISMK 172 Query: 191 ----FEPIIGNPGDGASPSCAIVDEYHEHDSAALYETMLTGMGARRQPLMFIITTAGANI 246 F+ DGA C DE H ++ + +G+G P F I T G Sbjct: 173 AQFVFDTSNEKTKDGAREGCVFFDEIHAYEKDTIINVKRSGLGKVAHPRTFYIGTDGHVR 232 Query: 247 EGPCFDKRRQVIEMLEGTVPDDELFGWIWTIDEGDDWTDPRVLAKANP-------NIGIS 299 EG + + +L G P+D LF +I ID+ ++ D + KANP + G Sbjct: 233 EGFLDKLKERAANVLIGESPEDRLFPFICKIDDKEELHDFDMWQKANPMFEAPMNDYGRQ 292 Query: 300 VYQDYLESQQQRAIK---SARFTNTFKTKHLNVWTSAKAGYFNLEDWKSCEDRSLTLEQF 356 ++Q+ QQ ++K S R F TK +N+ + + W + + Sbjct: 293 LFQEV--KQQYLSLKFNPSGR--TEFMTKRMNLPETDSQSV--VAPWDDILATNRDMPSL 346 Query: 357 EGQDCVLALDMARKLDLNSMARLFWHDIDGRRHYFCVAPRFWVPEDTVRNTENRRMAERY 416 + +C+ LD A D ++ LF D + A + ++ E ++ Sbjct: 347 DNHECIGGLDYASLKDFAAVGLLFKVDDEYIWKTHSFARKAFLDE--------YQLKPPI 398 Query: 417 QAWVNQGCLLETDGAEIDYRDILEEAKDANRLCPVQCTPLDPHGATNLSHQLADEGLTPV 476 W +G L D I + I++ +A + ++ D + +L L +E Sbjct: 399 HEWAEKGLLTIVDEPTISPKHIIDWFLEAQKHYGLKKVIAD-NFRMDLLRPLFEENDIDY 457 Query: 477 TIVQNYTNMSDPMK-ELEAAITSGRFHHDGNPIMTWCVSNVIGK-NLPGNDDVVRPIKQG 534 +V+N + + +E NP+M W NV K + GN + K+ Sbjct: 458 EVVKNTRAIQSLLAPRVEDMFAQQNIIFGDNPLMRWYTGNVAVKIDKYGNKTYEK--KEP 515 Query: 535 NDNKIDGAVALIMAVGRA 552 K DG ALI A+ RA Sbjct: 516 VRRKTDGFQALIHALYRA 533 >gi|1545|lcl|protein:vir:100880 Length: 630 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1473 # MgeName: Lc-Nu # Cross-refs: genbank:acc:YP_358760;genbank:gi:78000026;genbank:GeneID :3726151 Length = 630 Score = 68.9 bits (167), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 105/427 (24%), Positives = 174/427 (40%), Gaps = 62/427 (14%) Query: 11 GLKFARDVV-RGKRPACRYVQLACKRHLDDLAASRKKDFRWKFDPEAAERKLALIELLPH 69 G ++A DV+ K R VQLAC RHL+DL DF +++ + LLP+ Sbjct: 35 GTRYAYDVMFTDKYMTGRDVQLACIRHLNDLLRIGNDDFPYQYSSDMVNAIEYFSRLLPN 94 Query: 70 ----TKGEWAFKGQLVTLEPWQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGKS-VTA 124 +K FK WQ F L + GW G RF S + R+ GK+ + + Sbjct: 95 PDDTSKKIQPFK--------WQSFILDSLIGWRTVDNGT-RFTTSNISIARQQGKTWLAS 145 Query: 125 AGVGIGMFVLD-DEFGAEVYAGATTEKQAWEVFRPAQLMVK---RSPMLIDSA---GIEV 177 + FV+ + ++ + + A ++F L K P D A G+E Sbjct: 146 ILINFYYFVVCWNATSQDLLVASYDSEHATKLFNDVSLQAKTILSLPEFADDARERGVEA 205 Query: 178 NASNM--NKPADGSRFEPIIGNPGDGASPSCAIVDEYHEHDSAALYETM---LTGMGARR 232 + + + R G D + A+ DE AL ET+ +G + Sbjct: 206 QTTQVIAKNTKNTIRKGTSQGGGFDSFHNAIAVYDEIGNL-RPALNETLKQITSGQNGIK 264 Query: 233 QPLMFIITTAGANIEGPCF---DKRRQVIEMLEGTVPDDELFGWIWTIDEGDDWTDPRVL 289 + I+TA +I+ D R IE + D +F I++ D D+ +P Sbjct: 265 NRMFVKISTAYPDIKVKFKNDEDVTRAAIEH-DAVRDADNVFQVIYSQDSEDEVFEPETW 323 Query: 290 AKANPNIGISVYQDYLE------SQQQRAIKSARFTN-------TFKTKHLNVWTSA-KA 335 AK+NPN+ LE Q A+ R N TF K LN+W+ + Sbjct: 324 AKSNPNL--------LELPKSKRDNLQNALNQDRNDNEREGTLETFVNKSLNLWSRRFQN 375 Query: 336 GYFNLEDWKSCEDRSLTLEQFE--GQDCVLALDMARKLDLNSMARLFWHDIDGRRHYFCV 393 Y +L++ + RS+ +++F+ G+D + D ++ D S ++ + D +H F V Sbjct: 376 SYLSLDNIQ----RSI-IDRFDVNGRDVFIGFDGSQTNDNTSFGFIYPY-TDHDKHMFHV 429 Query: 394 APRFWVP 400 ++P Sbjct: 430 QQHSFIP 436 >gi|1673|lcl|protein:vir:100634 Length: 553 # NCBI annotation: 77ORF003 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1476 # MgeName: 77 # Cross-refs: genbank:acc:NP_958603;genbank:gi:41189518;genbank:GeneID :2743780 Length = 553 Score = 68.9 bits (167), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 117/520 (22%), Positives = 198/520 (38%), Gaps = 49/520 (9%) Query: 52 FDPEAAERKLALIELLPHTKGEWAFKGQLVTLEPWQKFGLMATFGWLNKRTGKRRFRESY 111 FD + E + IE +W F TL P+Q+F ++A ++K T + F E Sbjct: 44 FDEQKIEDCIKFIE-------KWYFP----TL-PFQRF-IIANIFLIDKNTDEAFFTEFA 90 Query: 112 WEVPRKNGKSVTAAGVGIGMFVLDDEFGAEVY---AGATTEKQAWEVF---RPAQLMVKR 165 + R GK+ + I F+ G + Y A +E QA F R + KR Sbjct: 91 IFMGRGGGKNGLISA--ISDFLSTPLHGVKEYHISIVANSEDQAKTSFDEIRTVLMDNKR 148 Query: 166 SPM-LIDSAGIEVNASNMNKPADGS--RFEPIIGNPGDGASPSCAIVDEYHEHDSAALYE 222 + A EV+ + + A S R+ DG C I DE H + Sbjct: 149 NKTGKTPKAPYEVSKAKIINRATKSVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVN 208 Query: 223 TMLTGMGARRQPLMFIITTAGANIEGPCFDKRRQVIEMLEGTVPDDELFGWIWTIDEGDD 282 G+G ++ F I+T G EG + ++ +L G V + LF + +D+ + Sbjct: 209 VKRGGLGKKKNRRTFYISTDGFVREGYIDAMKHKIASVLSGKVKNSRLFAFYCKLDDPKE 268 Query: 283 WTDPRVLAKANPNIG--ISVYQDYLESQQQRAIKSARFTNT----FKTKHLNVWTSAKAG 336 D + KANP + +S Y L S + F + F TK +N+ Sbjct: 269 VDDRQTWEKANPMLHKPLSEYAKTLLSTIEEEYNDLPFNRSNKPEFMTKRMNLPEVDLEK 328 Query: 337 YFNLEDWKSCEDRSLTLEQFEGQDCVLALDMARKLDLNSMARLFWHDIDGRRHYFCVAPR 396 + WK + + + Q C+ LD A D S+ LF + D Sbjct: 329 V--IAPWKEILATNREIPNLDNQMCIGGLDFANIRDFASVGLLFRKNDD----------Y 376 Query: 397 FWVPEDTVRN--TENRRMAERYQAWVNQGCLLETDGAEIDYRDILEEAKDANRLCPVQCT 454 W+ VR ++ ++ + W G L D I+ I++ A ++ Sbjct: 377 IWLGHSFVRQGFLDDVKLEPPIKEWEKMGLLTIVDDDVIEIEYIVDWFLKAREKYGLEKV 436 Query: 455 PLDPHGATNLSHQLADEGLTPVTIVQNYTNMSDPMK-ELEAAITSGRFHHDGNPIMTWCV 513 D + + D G+ + +++N + + ++ + NP+M W Sbjct: 437 IADNYRTDIVRRAFEDAGIK-LEVLRNPKAIHGLLAPRIDTMFAKHNVIYGDNPLMRWFT 495 Query: 514 SNVIGKNLP-GNDDVVRPIKQGNDNKIDGAVALIMAVGRA 552 +NV K P GN + ++ K K DG +A + A+ RA Sbjct: 496 NNVAVKIKPDGNKEYIK--KDEVRRKTDGFMAFVHALYRA 533 >gi|11068|lcl|protein:vir:78311 Length: 547 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1850 # MgeName: B025 # Cross-refs: genbank:acc:YP_001468641;genbank:gi:157325219;genbank:Ge neID:5601657 Length = 547 Score = 64.3 bits (155), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 123/561 (21%), Positives = 202/561 (36%), Gaps = 86/561 (15%) Query: 36 HLDDLAASRKKDFRWKFDPEAAERKLALIELLPHTKGEWAFKGQLVTLEPWQKFGLMATF 95 HL + SR + FD E ++ E +W F L+ W+KF +A F Sbjct: 31 HLQEHVLSRDDIY---FDETQIENYISFSE-------KWYF-----PLDNWEKF--IAPF 73 Query: 96 GWLNKRTGKRRFRESYWEVPRKNGKSVTAAGVGIGMFV--LDDEFGAEVYAGATTEKQAW 153 +L + F E ++ + G F+ L +V A +E QA Sbjct: 74 IFLYFKEDDELFYEEFFITLGRGGGKNGFISTLSNYFISPLHGINNYDVSVVANSEDQAK 133 Query: 154 EVFRPAQLMVKRSPMLIDS-----AGIEVNASNMNKPADGSRFEPIIGNPGDGASPSCAI 208 F+ + +P L S A I A+N +F+ DG C I Sbjct: 134 VSFKEVFNTIDGNPKLEGSFDAWKAQIIGKATN-----SVFKFQTSNAKTKDGGREGCVI 188 Query: 209 VDEYHEHDSAALYETMLTGMGARRQPLMFIITTAGANIEGPCFDKRRQVIE-MLEGTVPD 267 DE HE++ + + G+G P F I T G + +DK + + +L G + Sbjct: 189 YDETHEYEDRQIIDVFSGGLGKVANPREFFIGTNGF-VRAGFYDKLEERSKAILSGENLN 247 Query: 268 DELFGWIWTIDEGDDWTDPRVLAKANPNIGISVYQDYLESQQQRAIKSAR-----FTNT- 321 D +F +I +D+ + + + KANP ++ L + +R + R TN Sbjct: 248 DRMFPFICKLDDPAEVKNEAMWEKANP-----AFEKPLSPRSKRLLNKVRKQYEALTNNP 302 Query: 322 -----FKTKHLNVWTSAKAGYFNLED----WKSCEDRSLTLEQFEGQDCVLALDMARKLD 372 F TK +N+ +LE W+ + + + + + C+ A D A D Sbjct: 303 SGREAFMTKRMNL------PEVDLEKVVAPWEDILATNREMPELQNRACIGAFDYASVKD 356 Query: 373 LNSMARLF-------W--HDIDGRRHYFCVAPRFWVPEDTVRNTENRRMAERYQAWVNQG 423 ++ LF W H R+ Y +A + + W QG Sbjct: 357 FAAVGLLFRVGDDYIWKTHSF-ARKGYLDIA----------------NLKPPIKEWEKQG 399 Query: 424 CLLETDGAEIDYRDILEEAKDANRLCPVQCTPLDPHGATNLSHQLADEGLTPVTIVQNYT 483 L D ID R ++ + +Q D + EG I Sbjct: 400 LLTIVDEPTIDPRHVVNWFVEMRETHGIQKVIGDNFRMDLMRPLFEAEGFELEIIRNPRA 459 Query: 484 NMSDPMKELEAAITSGRFHHDGNPIMTWCVSNVIGKNLP-GNDDVVRPIKQGNDNKIDGA 542 S +E + R NP+M W +NV K P GN + ++ K + K DG Sbjct: 460 AHSLLAPRIETLFANHRIVFGDNPLMRWYTNNVAVKIKPDGNKEYLK--KDEHRRKTDGF 517 Query: 543 VALIMAVGRAMLADRVDSESI 563 A + A+ RA + +D E + Sbjct: 518 QAFVHALWRADEIEDMDVEEV 538 >gi|9232|lcl|protein:vir:97071 Length: 561 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1653 # MgeName: OP1 # Cross-refs: genbank:acc:YP_453562;genbank:gi:84662597;genbank:GeneID :5142486 Length = 561 Score = 61.2 bits (147), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 61/260 (23%), Positives = 109/260 (41%), Gaps = 18/260 (6%) Query: 85 PWQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGKSVTAAGVGIGMFVLDDEFGAEVYA 144 PW + FG + TG +E + VP+K+ KS A+G+ + ++ A Sbjct: 60 PWILDFVRYVFGAYDADTGNNLLKELFLLVPKKSAKSSLASGIMLTALIIGWRKSASYII 119 Query: 145 GATTEKQAWEVFRPAQLMVKRSPMLIDSAGIEVNASNMNKPADGSRFEPIIG--NPGDGA 202 + T + A F+PA V+ P L + + + G+ + + + G+ Sbjct: 120 ISPTIEIAGNSFKPAADSVRADPELSKLLQVSAHTRTITNRVTGAVLKVLAAAEDTVTGS 179 Query: 203 SPSCAIVDEYH-----EHDSAALYETMLTGMGARRQPLMFIITTAGANIEGPCFDKRRQV 257 S ++DE H E+ S+ L E G+ AR + + +TT + F + Sbjct: 180 KASVLLIDELHLMGLKENGSSMLREAA-GGLAARPEGFVLKLTTQSSQAPAGVFKSDLDL 238 Query: 258 IEML-EGTVPDDELFGWIWT-----IDEGDDWTDPRVLAKANPNIGISVYQDYLESQ--Q 309 + +G V D FG ++ ID+G T + NP++G SV ++YLE + Sbjct: 239 FRNVRDGIVVDKRRFGLLYEHPKSWIDDGRAQTLEGI-ELVNPSLGYSVDRNYLEDSYNK 297 Query: 310 QRAIKSARFTNTFKTKHLNV 329 +A+ + F KH N+ Sbjct: 298 AKAVGGGELLD-FLAKHANI 316 >gi|19650|lcl|protein:vir:10361 Length: 561 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:183 # MgeName: Xp10 # Cross-refs: genbank:acc:NP_858953;genbank:gi:32128418;genbank:GeneID :2648405 Length = 561 Score = 60.1 bits (144), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 68/289 (23%), Positives = 117/289 (40%), Gaps = 19/289 (6%) Query: 85 PWQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGKSVTAAGVGIGMFVLDDEFGAEVYA 144 PW + FG N TG +E + VP+K+ KS A+GV + ++ A Sbjct: 60 PWVLDFVRYIFGSYNAETGHNLIKEFFCLVPKKSSKSSIASGVMLTQLIMGWRKSASYLI 119 Query: 145 GATTEKQAWEVFRPAQLMVKRSPMLIDSAGIEVNASNMNKPADGSRFEPIIG--NPGDGA 202 A T + A F+PA V+ P L I + + G+ + I N G+ Sbjct: 120 VAPTIEVAQASFKPASDSVRADPQLSKLINISTHTRTLTNRVSGAVLKVIAADENSVTGS 179 Query: 203 SPSCAIVDEYH----EHDSAALYETMLTGMGARRQPLMFIITTAGANIEGPCFDKRRQVI 258 S +VDE H + +++++ G+ AR + + ++T + F + Sbjct: 180 KASVLLVDECHRLGTKENASSMLREAAGGLAARPEGFIIKLSTQASEPPAGVFKDDLDLF 239 Query: 259 EML-EGTVPDDELFGWIWT-----IDEGDDWTDPRVLAKANPNIGISVYQDYLESQQQRA 312 + +G V D FG ++ +++G T + NP++G SV +YLE +RA Sbjct: 240 RSIRDGIVVDKRRFGVLYEHPKAWLEDGRAMTLEGI-KLVNPSLGYSVDMNYLEDAYERA 298 Query: 313 --IKSARFTNTFKTKHLNVWTSAKA---GYFNLEDWKSCEDRSLTLEQF 356 I + + KH NV + + W D +LTL+ Sbjct: 299 KNIGGGELLD-YLAKHANVQIGMNLRNDRFAGADFWAQNADPTLTLDTL 346 >gi|8010|lcl|protein:vir:100250 Length: 570 # NCBI annotation: gp79 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1619 # MgeName: Bcep176 # Cross-refs: genbank:acc:YP_355415;genbank:gi:77864705;genbank:GeneID :3725972 Length = 570 Score = 59.3 bits (142), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 60/258 (23%), Positives = 109/258 (42%), Gaps = 12/258 (4%) Query: 84 EPWQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGKSVTAAGVGIGMFVLDDEFGAEVY 143 E W + A FG + TGK+ RE + + +KN KS AAG+ + +L E Sbjct: 56 EQWVFDFVAAIFGAYDAETGKQLIREFFLLISKKNTKSTIAAGIMLTAVILCWREEEEHL 115 Query: 144 AGATTEKQAWEVFRPAQLMVKRSPMLIDSAGIEVNASNMNKPADGSRFEPIIGNPG--DG 201 A T++ A F+PA M++ L + ++ + + + + + + G Sbjct: 116 ILAPTKEVADNSFKPAAGMIRADAELSELFHVQDHIRTITHRVSRASLKVVAADTDTVSG 175 Query: 202 ASPSCAIVDEY----HEHDSAALYETMLTGMGARRQPLMFIITTAGANIEGPCFDKRRQV 257 ++DE+ ++ A++ G +R + + I+TT F ++ Q Sbjct: 176 KKSGKILIDEHWVFGKRANAEAMFMEATGGQVSRDEGWVIILTTQSDEPPAGVFKEKLQY 235 Query: 258 I-EMLEGTVPDDELFGWIWTIDE----GDDWTDPRVLAKANPNIGISVYQDYLESQQQRA 312 ++ +G + D + G ++ E + DP NPN+G SV ++LE Q + Sbjct: 236 YRDVRDGKIVDRKSLGVLYEFPEEMVKSKAYLDPANYYITNPNLGRSVSAEWLEDQLNKI 295 Query: 313 -IKSARFTNTFKTKHLNV 329 K+ F KHLNV Sbjct: 296 RTKTDGSFQQFIAKHLNV 313 >gi|13082|lcl|protein:vir:81073 Length: 569 # NCBI annotation: p06 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1889 # MgeName: Xop411 # Cross-refs: genbank:acc:YP_001285676;genbank:gi:148727184;genbank:Ge neID:5247118 Length = 569 Score = 58.9 bits (141), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 69/289 (23%), Positives = 115/289 (39%), Gaps = 19/289 (6%) Query: 85 PWQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGKSVTAAGVGIGMFVLDDEFGAEVYA 144 PW FG N TG +E + VP+K+ KS A+GV + M + A Sbjct: 68 PWVLDFCRYVFGSYNADTGHNLIKEFFCLVPKKSSKSSIASGVMLTMLITGWRKSATYMI 127 Query: 145 GATTEKQAWEVFRPAQLMVKRSPMLIDSAGIEVNASNMNKPADGSRFEPIIG--NPGDGA 202 A T + A F+PA V+ P L I + + G+ + + N G+ Sbjct: 128 VAPTIEVAQASFKPAADSVRADPQLSKLIQISAHTKTLTNRVSGAVLKIVAADENTVTGS 187 Query: 203 SPSCAIVDEYH----EHDSAALYETMLTGMGARRQPLMFIITTAGANIEGPCFDKRRQVI 258 S +VDE H + + ++ G+ AR + + ++T + F ++ Sbjct: 188 KASVLLVDECHRLGTKENGGSMLREAAGGLAARPEGFIIKLSTQSSEPPAGVFKDDLELF 247 Query: 259 EML-EGTVPDDELFGWIWT-----IDEGDDWTDPRVLAKANPNIGISVYQDYLESQQQRA 312 + +G V D FG ++ +++G T + NP++G SV +YLE +RA Sbjct: 248 RNVRDGVVTDKRRFGVLYEHPKAWLEDGRAMTLEGI-KLVNPSLGYSVDMNYLEDAYERA 306 Query: 313 --IKSARFTNTFKTKHLNVWTSAKA---GYFNLEDWKSCEDRSLTLEQF 356 I + + KH NV + + W D SLTL+ Sbjct: 307 KNIGGGELLD-YLAKHANVQIGMNLRNDRFAGADFWAQNADPSLTLDTL 354 >gi|19024|lcl|protein:vir:9640 Length: 576 # NCBI annotation: large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:173 # MgeName: 315.1 # Cross-refs: genbank:acc:NP_795402;genbank:gi:28876175;genbank:GeneID :1257725 Length = 576 Score = 57.8 bits (138), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 124/538 (23%), Positives = 203/538 (37%), Gaps = 71/538 (13%) Query: 73 EWAFKGQLVTLEPWQKFGLMATFGWLN-KRTGKRRFRESYWEVPRKNGKSVTAAGVGIGM 131 +W FK LE +QKF + +F +L T + +++ + R GK+ +G I Sbjct: 59 KWFFK-----LENFQKF--IISFVFLRYSETNRNVYKKILIMMGRGGGKNGLISG--IIA 109 Query: 132 FVLDDEFGAEVY---AGATTEKQAWEVFRPAQLMVKRSPMLID---SAGIEVNASNMNKP 185 ++L G + Y A +E QA F V+ +P L + + E+ + + N Sbjct: 110 YLLSPFHGIKNYNVSLVANSEDQAKTSFDEIYNTVESNPKLKEIYYNTKSEIKSIHTNSV 169 Query: 186 ADGSRFEPIIGNPGDGASPSCAIVDEYHEHDSAALYETMLTGMGARRQPLMFIITTAGAN 245 RF GN DG + DE H+++S +G+G + F I T G Sbjct: 170 M---RFRTSNGNTKDGLRDGMVVFDEIHQYESNKDVRVHKSGLGKVKNAREFYIGTDGYV 226 Query: 246 IEGPCFDKRRQVIEMLEGTVPDDELFGWIWTIDEGDDWTDPRVLAKANPNIG--ISVYQ- 302 EG + + ++L G + +F +I IDE + D KANP +S Y Sbjct: 227 REGFIDSMKDKAKKVLSGNARWNSMFPFICKIDEEHEVDDKEKWQKANPMFHEPMSDYAQ 286 Query: 303 ---DYLESQQQRAIKSARFTNTFKTKHLNVWTSAKAGYFNLEDWK----SCEDRSLT--- 352 D + Q + ++ F TK ++ F + D + S E+ T Sbjct: 287 ELFDMVCEQYEEMVEDPSNREEFMTKRMD---------FPVMDVERSVASHEELVATKRE 337 Query: 353 LEQFEGQDCVLALDMARKLDLNSMARLFWHDIDGRRHYFCVAPRFWVPE--DTVRNTENR 410 L G+ C+ LD A D ++ LF + D Y ++ F E DT R Sbjct: 338 LPDMRGEVCIGGLDYAAIRDFAAVGLLFKNGAD----YVWLSHSFVRKEFVDTYYGYSKR 393 Query: 411 -------RMAERYQAWVNQGCLLETDGAEIDYRDIL--------EEAKDANRLCP--VQC 453 R + W +G L D A I+ + I+ EE D R+ + Sbjct: 394 KDSINGKRQFAPIKKWEQEGLLTVIDEASINPQYIVDWFVKMRDEEGYDLQRIVSDNFRM 453 Query: 454 TPLDPHGATNLSHQLADEGLTP-----VTIVQNYTNMSDPMK-ELEAAITSGRFHHDGNP 507 L P L+ T + IV+N + + +E A + + N Sbjct: 454 EILKPLFEREGFEVLSKNTFTAPPGYQIEIVRNPRAIDSLLAPRIETAFANHKVIFGHND 513 Query: 508 IMTWCVSNVIGKNLPGNDDVVRPIKQGNDNKIDGAVALIMAVGRAMLADRVDSESIYD 565 +M W N++ + L + +V K+ K DG A A+ RA + YD Sbjct: 514 MMRWYTHNIL-RRLKSDGNVEYVKKEDTRRKTDGFKAFEYAMYRADTLEITSDADFYD 570 >gi|7042|lcl|protein:vir:98644 Length: 576 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1601 # MgeName: phi3396 # Cross-refs: genbank:acc:YP_001039919;genbank:gi:126011094;genbank:Ge neID:4818480 Length = 576 Score = 57.4 bits (137), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 125/538 (23%), Positives = 202/538 (37%), Gaps = 71/538 (13%) Query: 73 EWAFKGQLVTLEPWQKFGLMATFGWLN-KRTGKRRFRESYWEVPRKNGKSVTAAGVGIGM 131 +W FK LE +QKF + +F +L T + +++ + R GK+ +G I Sbjct: 59 KWFFK-----LENFQKF--IISFVFLRYSETNRNVYKKILIMMGRGGGKNGLISG--IIA 109 Query: 132 FVLDDEFGAEVY---AGATTEKQAWEVFRPAQLMVKRSPMLID---SAGIEVNASNMNKP 185 +++ G + Y A +E QA F V+ +P L + + E+ + + N Sbjct: 110 YLISPFHGIKNYNVSLVANSEDQAKTSFDEIYNTVESNPKLKEIYYNTKSEIKSIHTNSV 169 Query: 186 ADGSRFEPIIGNPGDGASPSCAIVDEYHEHDSAALYETMLTGMGARRQPLMFIITTAGAN 245 RF GN DG + DE H+++S +G+G + F I T G Sbjct: 170 M---RFRTSNGNTKDGLRDGMVVFDEIHQYESNKDVRVHKSGLGKVKNAREFYIGTDGYV 226 Query: 246 IEGPCFDKRRQVIEMLEGTVPDDELFGWIWTIDEGDDWTDPRVLAKANPNIG--ISVYQ- 302 EG + + ++L G + +F +I IDE + D KANP +S Y Sbjct: 227 REGFIDSMKDKAKKVLSGAARWNSMFPFICKIDEEHEVDDKEKWQKANPMFHQPMSDYAQ 286 Query: 303 ---DYLESQQQRAIKSARFTNTFKTKHLNVWTSAKAGYFNLEDWK----SCEDRSLT--- 352 D + Q + I+ F TK ++ F + D + S E+ T Sbjct: 287 ELFDMVCEQYEEMIEDPSNREEFMTKRMD---------FPVMDVERSVASHEELVATKRE 337 Query: 353 LEQFEGQDCVLALDMARKLDLNSMARLFWHDIDGRRHYFCVAPRFWVPE--DTVRNTENR 410 L G+ C+ LD A D ++ LF R Y ++ F E DT R Sbjct: 338 LPDMRGEVCIGGLDYAAIRDFAAVGLLF----KDRDDYVWLSHSFVRKEFVDTYYGYSKR 393 Query: 411 -------RMAERYQAWVNQGCLLETDGAEIDYRDIL--------EEAKDANRLCP--VQC 453 R + W +G L D A I+ + I+ EE D R+ + Sbjct: 394 KDSINGKRQFAPIKKWEQEGLLTVIDEASINPQYIVDWFVKMRDEEGYDLQRIVSDNFRM 453 Query: 454 TPLDPHGATNLSHQLADEGLTP-----VTIVQNYTNMSDPMK-ELEAAITSGRFHHDGNP 507 L P L+ + + IV+N + + +E A + R N Sbjct: 454 EILKPLFEREGFEVLSKNTFSAPPGYQIEIVRNPRAIDSLLAPRIETAFANHRVVFGHND 513 Query: 508 IMTWCVSNVIGKNLPGNDDVVRPIKQGNDNKIDGAVALIMAVGRAMLADRVDSESIYD 565 +M W NV+ + L + +V K+ K DG A A+ RA + YD Sbjct: 514 MMRWYTHNVL-RRLKSDGNVEYVKKEDTRRKTDGFKAFEYAMYRADTLEITSDADFYD 570 >gi|15547|lcl|protein:vir:856 Length: 540 # NCBI annotation: putative terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:18 # MgeName: bIL170 # Cross-refs: genbank:acc:NP_047115;genbank:gi:9630568;genbank:GeneID: 1261755 Length = 540 Score = 52.4 bits (124), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 103/496 (20%), Positives = 199/496 (40%), Gaps = 46/496 (9%) Query: 81 VTLEPWQKF--GLMATFGWLNKRTGKRRF-RESYWEVPRKNGKSVTAAGVGIGMFVLDDE 137 + L P QK+ LM + ++++ + E + + R +GKS A + +L + Sbjct: 64 IKLHPTQKYWYELMLGYDMVDEKGVQVNLINEIFLNLGRGSGKSSLMATRVLNWMILGGQ 123 Query: 138 FGAEVYAGATTEKQAWEVFRPAQLMVKRSPML---IDSAGIEVNASNMNKPADGSRFEPI 194 +G E A QA VF + + S L ++ + + A + F+ Sbjct: 124 YGGESLVIAYDNTQARHVFDQVRNQTEASDTLRVYNENKIFKSTKQGLEFTAFKTTFKKQ 183 Query: 195 IGNP--GDGASPSCAIVDEYHEHDSAALYETMLTGMGARRQPLMFIITTAGANIEGPCFD 252 + G + S I DE H + + E++ G ++ I T+G +D Sbjct: 184 TNDTLRAQGGNSSLNIFDEVHTY-GEDITESVNKGSRQKQDNWQSIYITSGGLKRDGLYD 242 Query: 253 KRRQVIEMLEGTVPDDELFGWIWTIDEGDDWTDPRVLAKANPNIG-----ISVYQDYLES 307 K + + E +D FG ++ ++ + D + A P IG V ++Y + Sbjct: 243 KLVERFKS-EEEFYNDRSFGLLYMLENHEQVKDKKNWTMALPLIGDVPKWSGVIEEYELA 301 Query: 308 QQQRAIKSARFTNTFKTKHLNVWTSAKAGYFNLEDWKSCEDRSLTLEQFEGQDCVLALDM 367 Q A++ N F ++ + A YF +D K E L F + +D+ Sbjct: 302 QGDPALQ-----NKFLAFNMGLPMQDTAYYFTPQDTKLTE---FNLSVFNKNRTYVGIDL 353 Query: 368 ARKLDLNSMARLFWHDIDGRRHYFCVAPRFWVPEDTVRNTENRRMAERYQAW---VNQGC 424 + DL +++ F +++G+ + + +VR+ + E+ + W V++G Sbjct: 354 SLIGDLTAVS--FVCELEGKTYSHTLTF-------SVRSQYEQLDTEQQELWTEFVDRGE 404 Query: 425 LLETDGAEIDYRDILEEAKD--ANRLCPVQCTPLDPHGATNLS-----HQLADEGLTPVT 477 L+ D I+ D++ D + C ++ DP L + +G Sbjct: 405 LILLDTEYINVNDLIPYINDFRSKTGCRLRKIGYDPARYEILKGLIERYFFDKDGDNQRA 464 Query: 478 IVQNYTNMSDPMKELEAAITSGRFHHDGNPIMTWCVSNVIGKNLPGNDDVVRPIKQGNDN 537 I Q ++ M+D +K L++ + + H+ +M W ++N K G K+ + Sbjct: 465 IRQGFS-MNDYIKLLKSKLVENKLIHN-QKVMQWALNNTAVK--IGQSGDYMYTKKLEKD 520 Query: 538 KIDGAVALIMAVGRAM 553 KID VAL MA+ A+ Sbjct: 521 KIDPTVALTMALEMAV 536 >gi|14824|lcl|protein:vir:4088 Length: 550 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:86 # MgeName: 2389 # Cross-refs: genbank:acc:NP_510983;swissprot:trembl:q8w607;genbank:gi :17488505;uniprot:Q8W607;genbank:GeneID:1260359 Length = 550 Score = 50.8 bits (120), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 2/98 (2%) Query: 200 DGASPSCAIVDEYHEHDSAALYETMLTGMGARRQPLMFIITTAGANIEGPCFDKRRQVI- 258 DG+ P DE H ++ + Y +G+G + + F +TT G + G D R+ + Sbjct: 191 DGSRPGAVAFDEEHAYEDYSNYAVHTSGLGKKERSRRFHLTTDGY-VRGSVLDDRKVLAQ 249 Query: 259 EMLEGTVPDDELFGWIWTIDEGDDWTDPRVLAKANPNI 296 ++L G P+ ++F +I +D D+ + AKANP I Sbjct: 250 QVLNGEKPNSKMFPFICKLDSPDEVQNKTKWAKANPMI 287 >gi|4336|lcl|protein:vir:94893 Length: 540 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1532 # MgeName: P008 # Cross-refs: genbank:acc:YP_762513;genbank:gi:115304212;genbank:GeneI D:5141206 Length = 540 Score = 50.4 bits (119), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 95/465 (20%), Positives = 186/465 (40%), Gaps = 43/465 (9%) Query: 109 ESYWEVPRKNGKSVTAAGVGIGMFVLDDEFGAEVYAGATTEKQAWEVFRPAQLMVKRSPM 168 E + + R +GKS A + +L ++G E A QA VF + + S Sbjct: 95 EIFLNLGRGSGKSSLMATRVLNWMILGGQYGGESLVIAYDNTQARHVFDQVRNQTEASDT 154 Query: 169 L---IDSAGIEVNASNMNKPADGSRFEPIIGNP--GDGASPSCAIVDEYHEHDSAALYET 223 L ++ + + + + F+ + G + S I DE H + + E+ Sbjct: 155 LRVYNENKIFKSTKQGLEFTSFKTTFKKQTNDTLRAQGGNSSLNIFDEVHTY-GEDITES 213 Query: 224 MLTGMGARRQPLMFIITTAGANIEGPCFDKRRQVIEMLEGTVPDDELFGWIWTIDEGDDW 283 + G ++ I T+G +DK + + E +D FG ++ ++ + Sbjct: 214 VNKGSRQKQDNWQSIYITSGGLKRDGLYDKLVERFKS-EEEFYNDRSFGLLYMLENHEQV 272 Query: 284 TDPRVLAKANPNIG-----ISVYQDYLESQQQRAIKSARFTNTFKTKHLNVWTSAKAGYF 338 D + A P IG V ++Y +Q A++ N F ++ + A YF Sbjct: 273 KDKKNWTMALPLIGDVPKWSGVIEEYELAQGDPALQ-----NKFLAFNMGLPMQDTAYYF 327 Query: 339 NLEDWKSCEDRSLTLEQFEGQDCVLALDMARKLDLNSMARLFWHDIDGRRHYFCVAPRFW 398 +D K + L F + +D++ DL +++ F +++G+ + + + Sbjct: 328 TPQDTKLTD---FNLSVFNKNRTYVGIDLSLIGDLTAVS--FVCELEGKTYSYTLTF--- 379 Query: 399 VPEDTVRNTENRRMAERYQAW---VNQGCLLETDGAEIDYRDILEEAKD--ANRLCPVQC 453 +VR+ + E+ + W V++G L+ D I+ D++ D + C ++ Sbjct: 380 ----SVRSQYEQLDTEQQELWTEFVDRGELILLDTEYINVNDLIPYINDFRSKTGCRLRK 435 Query: 454 TPLDPHGATNLS-----HQLADEGLTPVTIVQNYTNMSDPMKELEAAITSGRFHHDGNPI 508 DP L + +G I Q ++ M+D +K L++ + + H+ + Sbjct: 436 IGYDPARYEILKGLIERYFFDKDGDNQRAIRQGFS-MNDYIKLLKSKLVENKLIHN-QKV 493 Query: 509 MTWCVSNVIGKNLPGNDDVVRPIKQGNDNKIDGAVALIMAVGRAM 553 M W ++N K G K+ +KID VAL MA+ A+ Sbjct: 494 MQWALNNTAVK--IGQSGDYMYTKKLEKDKIDPTVALTMALEMAV 536 >gi|1848|lcl|protein:vir:93873 Length: 540 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1479 # MgeName: 712 # Cross-refs: genbank:acc:YP_764262;genbank:gi:115315575;genbank:GeneI D:5141567 Length = 540 Score = 49.3 bits (116), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 101/496 (20%), Positives = 198/496 (39%), Gaps = 46/496 (9%) Query: 81 VTLEPWQK--FGLMATFGWLNKRTGKRRF-RESYWEVPRKNGKSVTAAGVGIGMFVLDDE 137 + L P QK + LM + ++++ + E + + R +GKS A + +L + Sbjct: 64 IKLHPVQKWWYELMLGYDMVDEKGIQVNLVNEIFLNLGRGSGKSSLMATRVLNWMILGGQ 123 Query: 138 FGAEVYAGATTEKQAWEVFRPAQLMVKRSPML---IDSAGIEVNASNMNKPADGSRFEPI 194 +G E A QA VF + + S L ++ + + + + F+ Sbjct: 124 YGGESLVIAYDNTQARHVFDQVRNQTEASDTLRVYNENKIFKSTKQGLEFTSFKTTFKKQ 183 Query: 195 IGNP--GDGASPSCAIVDEYHEHDSAALYETMLTGMGARRQPLMFIITTAGANIEGPCFD 252 + G + S I DE H + + E++ G ++ I T+G +D Sbjct: 184 TNDTLRAQGGNSSLNIFDEVHTY-GEDITESVNKGSRQKQDNWQSIYITSGGLKRDGLYD 242 Query: 253 KRRQVIEMLEGTVPDDELFGWIWTIDEGDDWTDPRVLAKANPNIG-----ISVYQDYLES 307 K + + E +D FG ++ ++ + D + A P IG V ++Y + Sbjct: 243 KLVERFKS-EEEFYNDRSFGLLYMLENHEQVKDKKNWTMALPLIGDVPKWSGVIEEYELA 301 Query: 308 QQQRAIKSARFTNTFKTKHLNVWTSAKAGYFNLEDWKSCEDRSLTLEQFEGQDCVLALDM 367 Q A++ N F ++ + A YF +D K + L F + +D+ Sbjct: 302 QGDPALQ-----NKFLAFNMGLPMQDTAYYFTPQDTKLTD---FNLSVFNKNRTYVGIDL 353 Query: 368 ARKLDLNSMARLFWHDIDGRRHYFCVAPRFWVPEDTVRNTENRRMAERYQAW---VNQGC 424 + DL +++ F +++G+ + + +VR+ + E+ + W V++G Sbjct: 354 SLIGDLTAVS--FVCELEGKTYSHTLTF-------SVRSQYEQLDTEQQELWTEFVDRGE 404 Query: 425 LLETDGAEIDYRDILEEAKD--ANRLCPVQCTPLDPHGATNLS-----HQLADEGLTPVT 477 L+ D I+ D++ D C ++ DP L + +G Sbjct: 405 LILLDTEYINVNDLIPYINDFRTKTGCRLRKIGYDPARYEILKGLIERYFFDKDGDNQRA 464 Query: 478 IVQNYTNMSDPMKELEAAITSGRFHHDGNPIMTWCVSNVIGKNLPGNDDVVRPIKQGNDN 537 I Q ++ M+D +K L++ + + H+ +M W ++N K G K+ + Sbjct: 465 IRQGFS-MNDYIKLLKSKLVENKLIHN-QKVMQWALNNTAVK--IGQSGDYMYTKKLEKD 520 Query: 538 KIDGAVALIMAVGRAM 553 KID VAL MA+ A+ Sbjct: 521 KIDPTVALTMALEMAV 536 >gi|19080|lcl|protein:vir:1659 Length: 540 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:34 # MgeName: sk1 # Cross-refs: genbank:acc:NP_044948;genbank:gi:9629655;genbank:GeneID: 1261297 Length = 540 Score = 48.9 bits (115), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 95/465 (20%), Positives = 184/465 (39%), Gaps = 43/465 (9%) Query: 109 ESYWEVPRKNGKSVTAAGVGIGMFVLDDEFGAEVYAGATTEKQAWEVFRPAQLMVKRSPM 168 E + + R +GKS A + +L ++G E A QA VF + + S Sbjct: 95 EIFLNLGRGSGKSSLMATRVLNWMILGGQYGGESLVIAYDNTQARHVFDQVRNQTEASDT 154 Query: 169 L---IDSAGIEVNASNMNKPADGSRFEPIIGNP--GDGASPSCAIVDEYHEHDSAALYET 223 L ++ + + + + F+ + G + S I DE H + + E+ Sbjct: 155 LRVYNENKIFKSTKQGLEFASFKTTFKKQTNDTLRAQGGNSSLNIFDEVHTY-GEDITES 213 Query: 224 MLTGMGARRQPLMFIITTAGANIEGPCFDKRRQVIEMLEGTVPDDELFGWIWTIDEGDDW 283 + G ++ I T+G +DK + + E +D FG ++ ++ + Sbjct: 214 VNKGSRQKQDNWQSIYITSGGLKRDGLYDKLVERFKS-EEEFYNDRSFGLLYMLENHEQV 272 Query: 284 TDPRVLAKANPNIG-----ISVYQDYLESQQQRAIKSARFTNTFKTKHLNVWTSAKAGYF 338 D + A P IG V ++Y +Q A++ N F ++ + A YF Sbjct: 273 KDKKNWTMALPLIGSVPKWSGVIEEYELAQGDPALQ-----NKFLAFNMGLPMQDTAYYF 327 Query: 339 NLEDWKSCEDRSLTLEQFEGQDCVLALDMARKLDLNSMARLFWHDIDGRRHYFCVAPRFW 398 +D K + L F + +D++ DL +++ F +++G+ + + Sbjct: 328 TPQDTKLTD---FNLSVFNKNRTYVGIDLSLIGDLTAVS--FVCELEGKTYSHTLTF--- 379 Query: 399 VPEDTVRNTENRRMAERYQAW---VNQGCLLETDGAEIDYRDILEEAKD--ANRLCPVQC 453 +VR+ + E+ + W V++G L+ D I+ D++ D C ++ Sbjct: 380 ----SVRSQYEQLDTEQQELWTEFVDRGELILLDTEYINVNDLIPHINDFRTKTGCRLRK 435 Query: 454 TPLDPHGATNLS-----HQLADEGLTPVTIVQNYTNMSDPMKELEAAITSGRFHHDGNPI 508 DP L + +G I Q ++ M+D +K L++ + + H+ + Sbjct: 436 IGYDPARYEILKGLIERYFFDKDGDNQRAIRQGFS-MNDYIKLLKSKLVENKLIHN-QKV 493 Query: 509 MTWCVSNVIGKNLPGNDDVVRPIKQGNDNKIDGAVALIMAVGRAM 553 M W ++N K G K+ +KID VAL MA+ A+ Sbjct: 494 MQWALNNTAVK--IGQSGDYMYTKKLEKDKIDPTVALTMALEMAV 536 >gi|2310|lcl|protein:vir:93989 Length: 540 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1487 # MgeName: jj50 # Cross-refs: genbank:acc:YP_764316;genbank:gi:115315630;genbank:GeneI D:5176576 Length = 540 Score = 47.8 bits (112), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 95/465 (20%), Positives = 184/465 (39%), Gaps = 43/465 (9%) Query: 109 ESYWEVPRKNGKSVTAAGVGIGMFVLDDEFGAEVYAGATTEKQAWEVFRPAQLMVKRSPM 168 E + + R +GKS A + +L ++G E A QA VF + + S Sbjct: 95 EIFLNLGRGSGKSSLMATRVLNWMILGGQYGGESLVIAYDNTQARHVFDQVRNQTEASDT 154 Query: 169 L---IDSAGIEVNASNMNKPADGSRFEPIIGNP--GDGASPSCAIVDEYHEHDSAALYET 223 L ++ + + + + F+ + G + S I DE H + + E+ Sbjct: 155 LRVYNENKIFKSTKQGLEFTSFKTTFKKQTNDTLRAQGGNSSLNIFDEVHTY-GEDITES 213 Query: 224 MLTGMGARRQPLMFIITTAGANIEGPCFDKRRQVIEMLEGTVPDDELFGWIWTIDEGDDW 283 + G ++ I T+G +DK + + E +D FG ++ ++ + Sbjct: 214 VNKGSRQKQDNWQSIYITSGGLKRDGLYDKLVERFKS-EEEFYNDRSFGLLYMLENHEQV 272 Query: 284 TDPRVLAKANPNIG-----ISVYQDYLESQQQRAIKSARFTNTFKTKHLNVWTSAKAGYF 338 D + A P IG V ++Y +Q A++ N F ++ + A YF Sbjct: 273 KDKKNWTMALPLIGSVPKWSGVIEEYELAQGDPALQ-----NKFLAFNMGLPMQDTAYYF 327 Query: 339 NLEDWKSCEDRSLTLEQFEGQDCVLALDMARKLDLNSMARLFWHDIDGRRHYFCVAPRFW 398 +D K + L F + +D++ DL +++ F +++G+ + + Sbjct: 328 TPQDTKLTD---FNLSVFNKNRTYVGIDLSLIGDLTAVS--FVCELEGKTYSHTLTF--- 379 Query: 399 VPEDTVRNTENRRMAERYQAW---VNQGCLLETDGAEIDYRDILEEAKD--ANRLCPVQC 453 +VR+ + E+ + W V++G L+ D I+ D++ D C ++ Sbjct: 380 ----SVRSQYEQLDTEQQELWTEFVDRGELILLDTEYINVNDLIPYINDFRTKTGCRLRK 435 Query: 454 TPLDPHGATNLS-----HQLADEGLTPVTIVQNYTNMSDPMKELEAAITSGRFHHDGNPI 508 DP L + +G I Q ++ M+D +K L++ + + H+ + Sbjct: 436 IGYDPARYEILKGLIERYFFDKDGDNQRAIRQGFS-MNDYIKLLKSKLAENKLIHN-QKV 493 Query: 509 MTWCVSNVIGKNLPGNDDVVRPIKQGNDNKIDGAVALIMAVGRAM 553 M W ++N K G K+ +KID VAL MA+ A+ Sbjct: 494 MQWALNNTAVK--IGQSGDYMYTKKLEKDKIDPTVALTMALEMAV 536 >gi|19608|lcl|protein:vir:4081 Length: 518 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:85 # MgeName: c2 # Cross-refs: genbank:acc:NP_043560;genbank:gi:9628694;genbank:GeneID: 1261154 Length = 518 Score = 44.7 bits (104), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 84/400 (21%), Positives = 152/400 (38%), Gaps = 64/400 (16%) Query: 160 QLMVKRSPMLIDSAGIEVNASNMNKPADGSRFEPIIGNPGDGASPSCAIVDEYHEHDSAA 219 Q++VK + +L S G E++ N+ + DG I+DE+ Sbjct: 153 QILVKDNSIL-KSKGTEISIYASNE------------DTLDGGREQLVIIDEFGAFKKNP 199 Query: 220 LYETMLTGMGARRQPLMFIITTAGANIEGPCFDKRRQVIEMLEGTVPDDELFGWI--WTI 277 L + G R+ I+T I G +D +E + V DD+ W+ + + Sbjct: 200 L---ITIRQGLRKNKGTLFISTTNNVIRGGAYDDE---LESWKEWVKDDDFSHWVFYYAL 253 Query: 278 DEGDDWTDPRVLAKANPNIGISVYQDYLESQQQRAIKSARFTNTFKTKHLNVWTSAKAGY 337 D+ D+ D KANP +G ++ + ++ AI + TK N+ + Sbjct: 254 DDYDEVKDSSKYIKANPALGYTLSLEDIQKDFIGAIGNPVKMAKIITKRFNLSMTDSTTI 313 Query: 338 FNLEDWKSCEDRSLTLEQFEGQDCVLALDMARKLDLNSMARLFWHDIDGRR----HYFCV 393 F+ + C L F G+ + D + + D+ W + G R +YF Sbjct: 314 FSKQLVDKCLVPPL---DFSGRLVAIGSDFSVRGDV-------WGTVIGYRENGHYYFKA 363 Query: 394 APRFWVPEDTVRNTENRRMAERYQAWVNQGCLLETDGAEIDYRDILEEAKDA-----NRL 448 P +PE + + + ++G ++ +EA DA N Sbjct: 364 IPV--MPE-----SAEDKFKHLGETITHEGI-----------NNMTDEAWDAFMSAMNGS 405 Query: 449 CPVQCTPLDPHGATNLSHQLADEGLTPV--TIVQNYTNMSDPMKELEAAITSGRFHHDGN 506 P+ DP+ A N + ++QN +S+ ++ + + G+ H D Sbjct: 406 VPIALN-YDPNYAKNFIDKFEQTYDIEFYNKVMQNSFKLSNTLEATQKLMEEGKIHFDSK 464 Query: 507 PIMTWCVSNVIGKNLPGNDDVVRPIKQGNDNKIDGAVALI 546 + ++ N G ++R IK+G +KID A ALI Sbjct: 465 LLAVHLMNAETKINDFG---LMRIIKKGYTDKIDLADALI 501 >gi|16679|lcl|protein:vir:4222 Length: 593 # NCBI annotation: predicted 66.2Kd protein # Family: family:all:1551 # MgeID: mge:89 # MgeName: L5 # Cross-refs: genbank:acc:NP_039677;swissprot:sw:q05219;genbank:gi:962 5443;uniprot:Q05219;genbank:GeneID:2942932;interpro:IPR0 05021 Length = 593 Score = 39.3 bits (90), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 4/63 (6%) Query: 490 KELEAAITSGRFHHDGNPIMTWCVSNVIGKNLPGNDD--VVRPIKQGNDNKIDGAVALIM 547 + LE A+ G HDGNP++ V N K P N D +R + + + KID AV ++ Sbjct: 513 ERLEDAVLEGEVWHDGNPVLRQHVLN--AKRHPTNYDAIAIRKVTKDSSKKIDAAVCAVL 570 Query: 548 AVG 550 A G Sbjct: 571 AFG 573 >gi|10890|lcl|protein:vir:78144 Length: 530 # NCBI annotation: probable terminase # Family: family:all:523 # MgeID: mge:1847 # MgeName: Min1 # Cross-refs: genbank:acc:YP_001294797;genbank:gi:149882818;genbank:Ge neID:5309172 Length = 530 Score = 38.9 bits (89), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 81/342 (23%), Positives = 124/342 (36%), Gaps = 49/342 (14%) Query: 63 LIELLPHTKG-----EWAFKGQLVTLEPWQKFGLMATFGWLNKRTGKRRFRESYWEVPRK 117 L EL P T E+A V L PWQK+ L+ G+ RFR++ V R+ Sbjct: 16 LCELTPQTSRGFDVIEFAEDVLKVCLFPWQKWLLIHMLE--LDAFGRLRFRKALVIVGRQ 73 Query: 118 NGKSVTAAGVGIGMFVLD-----DEFGAE--VYAGATTE----KQAWEVFR--------P 158 NGK++ AA + +D D+ + + GA + + W R Sbjct: 74 NGKTLIAAVLAAYWLYVDAGRWPDQLPEQDFIVVGAAQKLDIAMKPWRQVRRWGAPDDPK 133 Query: 159 AQLMVKRSPML--IDSAGIEVNASNMNKPADGSRFEPIIGNPGDGASPSCAIVDEYHEHD 216 + R P L N + G+ + P G S + I+DE E Sbjct: 134 VGIARDRVPDLQAFTYPPRTTNGETELRTHGGAAYLPRTFEGARGQSAARLILDELREQY 193 Query: 217 SAALYETMLTGMGARRQPLMFIITTAGANIEGPCFDKRRQVIEMLEGTVPDDELFGWI-- 274 + + A L+ + AG D R+ E + DD W Sbjct: 194 DYEGWSAIEKSANAMFDSLLVAFSNAGTKRSRVLRDVRQIGHEGV-----DDRETQWFIA 248 Query: 275 -WTIDEGDDWTDPRVLAKANPNIGISVYQDYLESQQ----QRAIKSARFTNTFKTKHLNV 329 W+ + D R A+ANP+ G YL RA A+ N + + L Sbjct: 249 EWSAEPDASLDDERAFAQANPSAG------YLAGMTIAGLMRAAAEAKEKNVERIEVLGQ 302 Query: 330 WTSAKA-GYFNLEDWKS--CEDRSLTLEQFEGQDCVLALDMA 368 W +AK + + E+WKS + S+ G V A+DM+ Sbjct: 303 WVTAKVDNFIDSEEWKSRHRDVASIFARIPNGARTVWAIDMS 344 >gi|17795|lcl|protein:vir:2426 Length: 595 # NCBI annotation: gp13 # Family: family:all:1551 # MgeID: mge:52 # MgeName: D29 # Cross-refs: genbank:acc:NP_046828;genbank:gi:9630396;genbank:GeneID: 1261617 Length = 595 Score = 37.4 bits (85), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Query: 490 KELEAAITSGRFHHDGNPIMTWCVSNVIGKNLPGNDD--VVRPIKQGNDNKIDGAVALIM 547 + LE A+ G HDGNP++ V N K P D +R + + + KID AV ++ Sbjct: 515 ERLEDAVLEGEVWHDGNPVLRQHVLN--AKRHPTTYDAIAIRKVTKDSSKKIDAAVCAVL 572 Query: 548 AVG 550 A G Sbjct: 573 AFG 575 >gi|9490|lcl|protein:vir:104081 Length: 594 # NCBI annotation: gp13 # Family: family:all:1551 # MgeID: mge:1656 # MgeName: Che12 # Cross-refs: genbank:acc:YP_655592;genbank:gi:109392463;genbank:GeneI D:4156949 Length = 594 Score = 35.0 bits (79), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Query: 490 KELEAAITSGRFHHDGNPIMTWCVSNVIGKNLPGNDD--VVRPIKQGNDNKIDGAVALIM 547 + LE A+ G HDGN +++ V N K P D +R + + + KID AV ++ Sbjct: 514 ERLEDAVLEGEVWHDGNAVLSQHVMN--AKRHPTTYDAIAIRKVTKDSSKKIDAAVCAVL 571 Query: 548 AVG 550 A G Sbjct: 572 AFG 574 >gi|13269|lcl|protein:vir:81252 Length: 542 # NCBI annotation: gp2, terminase # Family: family:all:523 # MgeID: mge:1893 # MgeName: BFK20 # Cross-refs: genbank:acc:YP_001456732;genbank:gi:157168375;interpro:I PR005021;uniprot:Q9MBK3;genbank:GeneID:5580375 Length = 542 Score = 31.2 bits (69), Expect = 0.033, Method: Compositional matrix adjust. Identities = 65/307 (21%), Positives = 119/307 (38%), Gaps = 47/307 (15%) Query: 81 VTLEPWQK-FGLMATFGWLNKRTGKRRFRESYWEVPRKNGKSVTAAGVGIGMFVLDDEFG 139 + L PWQ+ F + A K RFR+ V R+NGK++ +G+ +D Sbjct: 43 IELRPWQEWFFIHALELDPEKNYEDFRFRQLVLLVGRQNGKTLVMVILGLWKLFIDG--C 100 Query: 140 AEVYAGATTEKQAWEVFRPAQLMVKRSPMLIDSAGIEVNASNM---NKPADGSR-----F 191 +E+ A A A ++ K +P L + M + A+GS + Sbjct: 101 SEIVTAAQDLSVAEATLSNAFMLAKANPDLNQWLPWRMERGEMVPFMRTANGSNQIELAY 160 Query: 192 EP----------------IIGNPGDGASPSC--AIVDEYHEHDSAALYETMLTGMGARRQ 233 P + N G G S S A++DE EH + + + R + Sbjct: 161 APVPEALDVFGAMPKWFVVATNRGGGRSHSAELAMLDELREHTDFQSWGAITPAVAERPR 220 Query: 234 PLMFIITTAGANIEGPCFDKRRQVI--EMLEGTVPDDELFGWIWTIDEGDDWTDPRVLAK 291 ++ + AG + + K+R + E+ +G +L + W+ E D A Sbjct: 221 NQVYGFSNAG-DEKSVVLRKQRNICLKEISDGITDQSQLAIFEWSAPEECSIFDRDGWAA 279 Query: 292 ANPNIG---------ISVYQDYLESQQQRAIKSARFTNTFKTKHLNVWT-SAKAGYFNLE 341 ANP++G +S+ + L+ + A + N F+ ++L W + + G + Sbjct: 280 ANPSLGYGNRDEKTMLSLARAALDPEDDEADE-----NLFRIEYLCQWVKTLEQGKVKRD 334 Query: 342 DWKSCED 348 W + +D Sbjct: 335 TWDALKD 341 >gi|16473|lcl|protein:vir:7767 Length: 566 # NCBI annotation: gp13 # Family: family:all:1551 # MgeID: mge:149 # MgeName: Bxz2 # Cross-refs: genbank:acc:NP_817601;genbank:gi:29566031;genbank:GeneID :1259225 Length = 566 Score = 30.4 bits (67), Expect = 0.055, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Query: 492 LEAAITSGRFHHDGNPIMTWCVSNVIGKNLPGNDDVVRPIKQGNDNKIDGAVALIMAVG 550 L+A I FH DGNP++ V N + +R + + KID AV ++A G Sbjct: 489 LDAVIEQEVFH-DGNPVLKQHVCNARRHPTTYDAIAIRKASKDSGKKIDAAVCAVLAFG 546 >gi|11235|lcl|protein:vir:78494 Length: 562 # NCBI annotation: Putative terminase # Family: family:all:1551 # MgeID: mge:1853 # MgeName: U2 # Cross-refs: genbank:acc:YP_001491581;genbank:gi:157786404;genbank:Ge neID:5625646 Length = 562 Score = 30.0 bits (66), Expect = 0.078, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 6/78 (7%) Query: 495 AITSGRFHHDGNPIMTWCVSNVIGKNLPGNDDVVRPIKQGNDN--KIDGAVALIMAVGRA 552 A+ +G HD NP++ ++N P D + K G ++ KID AV ++A G Sbjct: 487 AVLAGEVKHDNNPVLKAHITN--AHQHPTIYDAISIRKPGKESKRKIDAAVTAVLAWGSR 544 Query: 553 MLADRVDSESIYDQGVGV 570 D + S+S +G G+ Sbjct: 545 Q--DFLLSKSNTGKGAGL 560 >gi|10332|lcl|protein:vir:97407 Length: 514 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1675 # MgeName: Q54 # Cross-refs: genbank:acc:YP_762597;genbank:gi:115304298;genbank:GeneI D:5130610 Length = 514 Score = 30.0 bits (66), Expect = 0.081, Method: Compositional matrix adjust. Identities = 32/152 (21%), Positives = 60/152 (39%), Gaps = 6/152 (3%) Query: 200 DGASPSCAIVDEYHEHDSAALYETMLTGMGARRQPLMFIITTAGANIEGPCFDKRRQVIE 259 +G A+VDE+ + L T+ G+ L+ I T+ + G +D+ Sbjct: 160 NGGREKLAVVDEFGTFPNNPL-PTIREGLEKNEGLLLTI--TSNNKVRGGAYDEELDTFR 216 Query: 260 MLEGTVPDDELFGWIWTIDEGDDWTDPRVLAKANPNIGI---SVYQDYLESQQQRAIKSA 316 + + + +G I+ +D+ DP KANP + +V + + + A S Sbjct: 217 GYNDEMDNFKQWGLIFELDDYSQIEDPNEWYKANPALDEAKGTVSTETITRELNAARHST 276 Query: 317 RFTNTFKTKHLNVWTSAKAGYFNLEDWKSCED 348 N +K N +A +F E+ + D Sbjct: 277 IKANNLFSKRFNFSVNAVTSFFTAEEIEIVTD 308 >gi|10991|lcl|protein:vir:78228 Length: 903 # NCBI annotation: Putative terminase # Family: family:all:1551 # MgeID: mge:1849 # MgeName: Bethlehem # Cross-refs: genbank:acc:YP_001491662;genbank:gi:157786486;genbank:Ge neID:5625706 Length = 903 Score = 30.0 bits (66), Expect = 0.084, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 6/78 (7%) Query: 495 AITSGRFHHDGNPIMTWCVSNVIGKNLPGNDDVVRPIKQGNDN--KIDGAVALIMAVGRA 552 A+ +G HD NP++ ++N P D + K G ++ KID AV ++A G Sbjct: 828 AVLAGEVKHDNNPVLKAHITN--AHQHPTIYDAISIRKPGKESKRKIDAAVTAVLAWGSR 885 Query: 553 MLADRVDSESIYDQGVGV 570 D + S+S +G G+ Sbjct: 886 Q--DFLLSKSNTGKGAGL 901 >gi|19975|lcl|protein:vir:108214 Length: 544 # NCBI annotation: gp5 # Family: family:all:523 # MgeID: mge:2004 # MgeName: Giles # Cross-refs: genbank:acc:YP_001552334;genbank:gi:160700654;genbank:Ge neID:5758934 Length = 544 Score = 28.1 bits (61), Expect = 0.32, Method: Compositional matrix adjust. Identities = 54/236 (22%), Positives = 88/236 (37%), Gaps = 36/236 (15%) Query: 114 VPRKNGKS-VTAAGVGIGMFVLDDEFGAEVYAGATTEKQAWEVFRPAQLMVKRSPMLI-- 170 +PR+NGK+ + A + G+F L G ++ A + +V+ ++KR P L+ Sbjct: 104 IPRQNGKTQLIALRIIYGLFFL----GEKIVYTAQRWQTVKDVYDRIVEIIKRRPSLLRR 159 Query: 171 -----------DSAGI--EVNASNMNKPADGSRFEPIIGNPGDGASP-SCAIVDEYHEHD 216 AG E+ +N G R + + G G + AI DE ++ Sbjct: 160 LKPMPGVPDGYSEAGQHGEIYTTNGGSLDMGPRTKAV----GRGQTKIDLAIFDEAYDIK 215 Query: 217 SAALYETMLTGMGARRQPLMFIITTAGANIEGP----CFDKRRQVIEMLEGTVPDDELFG 272 L + A P I+TA E P RR G + +L+ Sbjct: 216 DV-LVGGLTGAQKAATNPQTIYISTAAVASEHPDCGVLAGMRRN------GQRKEPDLYA 268 Query: 273 WIWTIDEGDDWTDPRVLAKANPNIGISVYQDYLESQQQRAIKSARFTNTFKTKHLN 328 W G DP A P+ GI+V + L + + A +AR + +L Sbjct: 269 AEWCAPPGMARDDPEAWRLACPSFGITVRERDLAREYRMARANARLLAIYDADYLG 324 >gi|19929|lcl|protein:vir:4852 Length: 369 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:106 # MgeName: DT1 # Cross-refs: genbank:acc:NP_049392;genbank:gi:9632420;genbank:GeneID: 1258503 Length = 369 Score = 26.6 bits (57), Expect = 0.85, Method: Compositional matrix adjust. Identities = 34/147 (23%), Positives = 60/147 (40%), Gaps = 31/147 (21%) Query: 239 ITTAGANIEGPCFDKRRQVIEMLEGTVPDDE------LFGWIWTIDEGDDWTDPRVLAKA 292 I+TA N P R+ ++L+ + DD+ +W+ D D+ P AK+ Sbjct: 9 ISTAYPNPSVPF----REDQKILQQAMEDDDNRDADTYLCLVWSQDNLDEVFQPETWAKS 64 Query: 293 NPNIGISVYQDYLESQQQRAIK-----------SARFTNTFKTKHLNVWTSAKAGYFNLE 341 NP + LES+++ +K S + F+ K++N W A + F Sbjct: 65 NPLLD-------LESERENLMKGLMDKRDSDLLSGNLAD-FQVKNMNCWLLADSNSF--L 114 Query: 342 DWKSCEDRSLTLEQFEGQDCVLALDMA 368 D K E+ + G+ + LD + Sbjct: 115 DLKDIENAVIPEFDIRGKRVYVGLDAS 141 >gi|24012|lcl|protein:vir:104946 Length: 547 # NCBI annotation: T4-like DNA packaging large subunit terminase # Family: family:all:147 # MgeID: mge:1630 # MgeName: P-SSM2 # Cross-refs: genbank:acc:YP_214360;genbank:gi:61806000;genbank:GeneID :3294466 Length = 547 Score = 25.8 bits (55), Expect = 1.5, Method: Compositional matrix adjust. Identities = 34/152 (22%), Positives = 62/152 (40%), Gaps = 18/152 (11%) Query: 106 RFRESYWEV---PRKNGKSVTAAGVGIGMFVLDDEFGAEVYAGATTEKQAWEVFRPAQLM 162 RF E+ + + PR+ GKS T + V +D V A + A ++ QL Sbjct: 67 RFHENRFNICKMPRQTGKSTTCISYLLHYAVFNDNVNVAVLANKAS--TARDLLGRLQLA 124 Query: 163 VKRSPMLIDSAGIEVNASNMNKPADGSRFE--PIIGNPGDGASPSCAIVDEY-----HEH 215 + P + I N ++ + +GS+ + G S + +DE+ H Sbjct: 125 YENLPRWMQQGIISWNKGSL-ELENGSKISANSTSSSAVRGGSYNVIFLDEFAFIPNHIA 183 Query: 216 DS--AALYETMLTGMGARRQPLMFIITTAGAN 245 D A++Y T+ +G + ++ + T G N Sbjct: 184 DDFFASVYPTITSGQSTK---VIIVSTPRGMN 212 >gi|14207|lcl|protein:vir:8315 Length: 503 # NCBI annotation: gp32 # Family: family:all:523 # MgeID: mge:154 # MgeName: Corndog # Cross-refs: genbank:acc:NP_817883;genbank:gi:29566316;genbank:GeneID :1259511 Length = 503 Score = 25.4 bits (54), Expect = 1.7, Method: Compositional matrix adjust. Identities = 8/30 (26%), Positives = 17/30 (56%) Query: 322 FKTKHLNVWTSAKAGYFNLEDWKSCEDRSL 351 F+ + L +W ++++ F+L W DR + Sbjct: 305 FRREALGIWDASESSSFDLAAWSDLGDRGV 334 >gi|6388|lcl|protein:vir:98470 Length: 536 # NCBI annotation: hypothetical protein # Family: family:all:1551 # MgeID: mge:1589 # MgeName: VWB # Cross-refs: genbank:acc:NP_958275;genbank:gi:41057249;genbank:GeneID :2732854 Length = 536 Score = 24.6 bits (52), Expect = 3.1, Method: Compositional matrix adjust. Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 5/62 (8%) Query: 489 MKELEAAITSGRFHHDGNPIMTWCVSNVIGKNLPGNDDVVRPIKQGND--NKIDGAVALI 546 +++ A+T HDG+ + V +++ ++ +K+ D NKID AVA + Sbjct: 454 LEKFHTALTECELTHDGSSAL---VRHLLNSRRRKTRSGIQIMKENPDSPNKIDAAVAAV 510 Query: 547 MA 548 +A Sbjct: 511 LA 512 >gi|3478|lcl|protein:vir:101370 Length: 494 # NCBI annotation: PacB # Family: family:all:144 # MgeID: mge:1512 # MgeName: P1 # Cross-refs: genbank:acc:YP_006576;genbank:gi:46401730;genbank:GeneID :2777432 Length = 494 Score = 24.6 bits (52), Expect = 3.5, Method: Compositional matrix adjust. Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 8/57 (14%) Query: 366 DMARKLDLNSMARLFWHDIDGRRHYFCVAPRFWVPEDTVRNTENRRMAERYQAWVNQ 422 DM +KL+L H D Y +VP+D V + E+ + AW+N+ Sbjct: 446 DMKKKLNL--------HSPDHWDTYCFAMLANYVPQDEVLSVEDEAQVDEALAWLNE 494 >gi|23580|lcl|protein:vir:102747 Length: 622 # NCBI annotation: terminase large subunit # Family: family:all:11211 # MgeID: mge:1610 # MgeName: YS40 # Cross-refs: genbank:acc:YP_874075;genbank:gi:118197682;genbank:GeneI D:4495939 Length = 622 Score = 24.3 bits (51), Expect = 4.2, Method: Compositional matrix adjust. Identities = 12/50 (24%), Positives = 22/50 (44%) Query: 349 RSLTLEQFEGQDCVLALDMARKLDLNSMARLFWHDIDGRRHYFCVAPRFW 398 RS + +F G++ + A+ R + N M + + + G H F W Sbjct: 221 RSSSRSRFNGKEKIFAISYMRYSESNGMIQKLYKEHLGLPHSFVAKYPTW 270 >gi|3859|lcl|protein:vir:107748 Length: 532 # NCBI annotation: gp33 TerL # Family: family:all:54 # MgeID: mge:1520 # MgeName: BcepB1A # Cross-refs: genbank:acc:YP_024878;genbank:gi:48697520;genbank:GeneI D:2948367 Length = 532 Score = 23.9 bits (50), Expect = 5.9, Method: Compositional matrix adjust. Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Query: 32 ACKRHLDDLAASRKKDFRWKFDPEAAE-RKLALIELLP 68 A K + + +D+ W FDP A E ++ A++ +P Sbjct: 37 AVKHYYKENPIDMVRDWGWTFDPRAIEVKRAAVMPFIP 74 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.320 0.135 0.423 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 278,940 Number of Sequences: 514 Number of extensions: 13674 Number of successful extensions: 305 Number of sequences better than 100.0: 87 Number of HSP's better than 100.0 without gapping: 74 Number of HSP's successfully gapped in prelim test: 13 Number of HSP's that attempted gapping in prelim test: 30 Number of HSP's gapped (non-prelim): 103 length of query: 570 length of database: 206,069 effective HSP length: 76 effective length of query: 494 effective length of database: 167,005 effective search space: 82500470 effective search space used: 82500470 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 40 (20.0 bits)