Query lcl|Aclame:protein:vir:3419|NCBI_annot:head-tail joining protein|genbank:acc:NP_040582;genbank:gi:9626246;genbank:GeneID:2703525 Match_columns 68 No_of_seqs 39 out of 54 Neff 4.0 Searched_HMMs 1612 Date Fri Nov 29 20:18:12 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_3 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_3_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:3419 Length: 68 # 100.0 2.7E-33 1.7E-36 199.1 8.5 68 1-68 1-68 (68) 2 protein:vir:388 Length: 68 # N 100.0 3.8E-33 2.3E-36 198.3 8.5 68 1-68 1-68 (68) 3 protein:vir:6383 Length: 76 # 99.7 1.1E-20 6.9E-24 130.0 4.0 68 1-68 2-76 (76) 4 protein:vir:79544 Length: 70 # 90.8 0.0031 2E-06 34.3 6.2 63 1-68 1-67 (70) 5 protein:vir:94507 Length: 113 38.7 1.1 0.00065 20.5 6.0 65 1-67 20-113 (113) 6 protein:vir:95774 Length: 115 26.1 1.5 0.0009 19.7 4.5 66 1-67 24-115 (115) 7 protein:vir:105776 Length: 133 18.4 3.2 0.002 17.8 4.8 68 1-68 31-122 (133) 8 protein:vir:96750 Length: 176 15.7 3.9 0.0024 17.4 6.0 65 1-68 100-171 (176) 9 protein:vir:6378 Length: 346 # 12.6 5 0.0031 16.7 5.9 63 1-68 102-201 (346) 10 protein:vir:106596 Length: 128 11.2 5.7 0.0035 16.4 4.8 63 1-67 38-128 (128) No 1 >protein:vir:3419 Length: 68 # NCBI annotation: head-tail joining protein # Family: family:all:1709 # MgeID: mge:70 # MgeName: lambda # Cross-refs: genbank:acc:NP_040582;genbank:gi:9626246;genbank:GeneID:2703525 Probab=99.96 E-value=2.7e-33 Score=199.12 Aligned_cols=68 Identities=100% Similarity=1.323 Sum_probs=67.9 Q ss_pred CcHHHHHHHHHHHHHHHhhCCeeEEEEcCCeEEEeeccchHHHHHHHHHHHHHhCCCCCCCCCccccC Q lcl|Aclame:pro 1 MTRQEELAAARAALHDLMTGKRVATVQKDGRRVEFTATSVSDLKKYIAELEVQTGMTQRRRGPAGFYV 68 (68) Q Consensus 1 mtl~~~L~eA~~A~h~L~tG~~vv~v~~~gr~V~Yt~An~~~L~~YI~~L~~~lg~~~~rR~Pag~~~ 68 (68) ||++++|+|||+|||+|+||++||||+||||+|+|++||+++|++||++||.+||.++|||+|+|||| T Consensus 1 M~~~~~L~eAr~AlH~LltGk~Vv~v~~dGr~V~ys~Asi~~L~~YI~~Le~~LG~~~r~R~Pagv~v 68 (68) T protein:vir:34 1 MTRQEELAAARAALHDLMTGKRVATVQKDGRRVEFTATSVSDLKKYIAELEVQTGMTQRRRGPAGFYV 68 (68) T ss_pred CcHHHHHHHHHHHHHHhhhcceeEEEeeCCcEEEeeecCHHHHHHHHHHHHHHhccCCCccCcccccC Confidence 99999999999999999999999999999999999999999999999999999999999999999999 No 2 >protein:vir:388 Length: 68 # NCBI annotation: gp3 # Family: family:all:1709 # MgeID: mge:325 # MgeName: N15 # Cross-refs: genbank:acc:NP_046898;genbank:gi:9630467;genbank:GeneID:1261642 Probab=99.96 E-value=3.8e-33 Score=198.34 Aligned_cols=68 Identities=85% Similarity=1.169 Sum_probs=67.8 Q ss_pred CcHHHHHHHHHHHHHHHhhCCeeEEEEcCCeEEEeeccchHHHHHHHHHHHHHhCCCCCCCCCccccC Q lcl|Aclame:pro 1 MTRQEELAAARAALHDLMTGKRVATVQKDGRRVEFTATSVSDLKKYIAELEVQTGMTQRRRGPAGFYV 68 (68) Q Consensus 1 mtl~~~L~eA~~A~h~L~tG~~vv~v~~~gr~V~Yt~An~~~L~~YI~~L~~~lg~~~~rR~Pag~~~ 68 (68) ||+++||+|||+|||+|+||++||||+||||+|+|++||+++|++||++||++||.+++||+|+||+| T Consensus 1 M~~~~~L~eAr~AlH~LltG~~Vvsv~~dGr~V~ys~Asi~~L~~YI~~Le~~LG~~~rrR~PaGv~v 68 (68) T protein:vir:38 1 MATQTELDAARAALHDLMMGKRVATVQKDGRRVEFTATSVSDLKKYIADLESQVGTTSRRRGPAGFYV 68 (68) T ss_pred CcHHHHHHHHHHHHHHhhhCceeEEEeeCCcEEEeeecCHHHHHHHHHHHHHHhccCCCccCcccccC Confidence 99999999999999999999999999999999999999999999999999999999999999999999 No 3 >protein:vir:6383 Length: 76 # NCBI annotation: head-tail joining protein Lambda W # Family: family:all:29422 # MgeID: mge:133 # MgeName: BcepNazgul # Cross-refs: genbank:acc:NP_918996;genbank:gi:34610171;genbank:GeneID:2559595 Probab=99.67 E-value=1.1e-20 Score=129.99 Aligned_cols=68 Identities=38% Similarity=0.570 Sum_probs=57.9 Q ss_pred CcHHH-HHHHHHHHHHHHhhCCeeE-EEEcCCeEEEeeccchHHHHHHHHHHHHHhCC-----CCCCCCCccccC Q lcl|Aclame:pro 1 MTRQE-ELAAARAALHDLMTGKRVA-TVQKDGRRVEFTATSVSDLKKYIAELEVQTGM-----TQRRRGPAGFYV 68 (68) Q Consensus 1 mtl~~-~L~eA~~A~h~L~tG~~vv-~v~~~gr~V~Yt~An~~~L~~YI~~L~~~lg~-----~~~rR~Pag~~~ 68 (68) |--.- --..-++|||+||||++|+ .|++||++||||+||.++|.+||++||+|+|. ++|+|+|++||. T Consensus 2 ~~~~~~~~~~~R~A~H~LmtGkav~~iV~qnG~rVeft~an~q~L~~Yi~~Leaq~g~~~~~gt~r~rGPl~F~~ 76 (76) T protein:vir:63 2 MQPAGSTSRRRRDAYHKLLTGRSARVIVDQNGERVEFTAANQQALVTYIRQLEAQCGDCGPCGGGRSNGPLQFTF 76 (76) T ss_pred CCCCccchhhHHHHHHHhhhhHHHHHHHhcCCCEEeeehhcHHHHHHHHHHHHHhhccccccCCCcccCcccccC Confidence 21111 1123589999999999997 57999999999999999999999999999996 789999999999 No 4 >protein:vir:79544 Length: 70 # NCBI annotation: hypothetical protein # Family: family:all:1547 # MgeID: mge:1871 # MgeName: cdtI # Cross-refs: genbank:acc:YP_001272516;genbank:gi:148609385;genbank:GeneID:5204380 Probab=90.75 E-value=0.0031 Score=34.30 Aligned_cols=63 Identities=24% Similarity=0.424 Sum_probs=48.2 Q ss_pred CcH---HHHHHHHHHHHHHHhhCCeeEEEEcCCeEEEeeccchHHHHHHHHHHHHHhC-CCCCCCCCccccC Q lcl|Aclame:pro 1 MTR---QEELAAARAALHDLMTGKRVATVQKDGRRVEFTATSVSDLKKYIAELEVQTG-MTQRRRGPAGFYV 68 (68) Q Consensus 1 mtl---~~~L~eA~~A~h~L~tG~~vv~v~~~gr~V~Yt~An~~~L~~YI~~L~~~lg-~~~~rR~Pag~~~ 68 (68) ||. +++|+.=.+|.-++++||++ +.||+++ |.+|+++++.=|...|+.|. +.+++|++-||=| T Consensus 1 mt~e~~~~ml~~yleAE~avl~GkS~---ti~gr~l--Tre~LseIRkgr~~We~rl~~~~~~r~g~~~~kv 67 (70) T protein:vir:79 1 MNQNDIEAMIQRYTEAEMAVLDGKSV---TFNGQQM--TMENLSEIRQGRQEWERRLAALITRRRGHPGYRL 67 (70) T ss_pred CCHHHHHHHHHHHHHHHHHHHcCCce---eeCCeee--cccCHHHHHHHHHHHHHHHHHHhcccCCCCCccc Confidence 765 56788889999999999965 5599986 57999999999999998883 3444444444444 No 5 >protein:vir:94507 Length: 113 # NCBI annotation: putative DNA packaging protein # Family: family:all:372 # MgeID: mge:1510 # MgeName: phiJL-1 # Cross-refs: genbank:acc:YP_223891;genbank:gi:62327103;genbank:GeneID:5075523 Probab=38.69 E-value=1.1 Score=20.46 Aligned_cols=65 Identities=15% Similarity=0.219 Sum_probs=41.2 Q ss_pred CcHHHHHHHHHHHHHHHhh----------------------------C-CeeEEEEcCCeEEEeeccchHHHHHHHHHHH Q lcl|Aclame:pro 1 MTRQEELAAARAALHDLMT----------------------------G-KRVATVQKDGRRVEFTATSVSDLKKYIAELE 51 (68) Q Consensus 1 mtl~~~L~eA~~A~h~L~t----------------------------G-~~vv~v~~~gr~V~Yt~An~~~L~~YI~~L~ 51 (68) =-|..-+..|.+++-..+- | ....|=|.+|++++|...| +|.-|...|+ T Consensus 20 ~lL~~iI~~a~~~i~~~l~~~~~~~~~iP~~l~~Iv~evavkryNR~g~EG~~S~SeeG~S~sf~~~~--df~~y~~~l~ 97 (113) T protein:vir:94 20 DLLTDIISDVQARVLAYVNQDGLVQSELPNGLDFVIKDVTIRIYNKIGDEGKESSSEGNVSNTWDTPA--DLSEYSDVLD 97 (113) T ss_pred hHHHHHHHHHHHHHHHHhCCccchhhhhhhHHHHHHHHHHHHHhcccCCccceeeecCceeeeecCcc--chhhHHHHHH Confidence 1233344455554433222 1 2234566799999997766 5888888888 Q ss_pred HHhCCCCCCCCCcccc Q lcl|Aclame:pro 52 VQTGMTQRRRGPAGFY 67 (68) Q Consensus 52 ~~lg~~~~rR~Pag~~ 67 (68) +-......+.+.++|+ T Consensus 98 ~~~~~~~~~~~g~rF~ 113 (113) T protein:vir:94 98 VYRKSYKRRSAGMRFI 113 (113) T ss_pred HHHhhccCCCCCceeC Confidence 8877666666678777 No 6 >protein:vir:95774 Length: 115 # NCBI annotation: hypothetical protein # Family: family:all:372 # MgeID: mge:1578 # MgeName: SMP # Cross-refs: genbank:acc:YP_950592;genbank:gi:119953787;genbank:GeneID:5076844 Probab=26.10 E-value=1.5 Score=19.69 Aligned_cols=66 Identities=21% Similarity=0.271 Sum_probs=40.2 Q ss_pred CcHHHHHHHHHHHHHHHh-----------------------hC-CeeEEEEcCCeEEEeeccchHHHHHHHHHHHHHhCC Q lcl|Aclame:pro 1 MTRQEELAAARAALHDLM-----------------------TG-KRVATVQKDGRRVEFTATSVSDLKKYIAELEVQTGM 56 (68) Q Consensus 1 mtl~~~L~eA~~A~h~L~-----------------------tG-~~vv~v~~~gr~V~Yt~An~~~L~~YI~~L~~~lg~ 56 (68) =-|+.-+..|++++-..+ .| ....|-|.+|++++| ..|-.++.-|...|++-++. T Consensus 24 ~lL~~ii~~a~~~i~~~l~~~~iP~~L~~Iv~ev~vkryNR~g~EG~~S~S~eG~S~tf-~~nD~~f~eY~~~l~~~~~~ 102 (115) T protein:vir:95 24 KLLEDLVEDAETYFKLLTSSAVVDSKYHFMIEAVVYKLYGRKGSEGVTSETVDGYSVTY-QEWDNLFKPYMAILNKDFGL 102 (115) T ss_pred HHHHHHHHHHHHHHHHhcCchhcchhHHHHHHHHHHHHhcCCCccccceeecCceeeec-cccccccchhHHHHHHHHhc Confidence 112333334444433221 12 234667789999999 55667788899999887765 Q ss_pred CCCC--CCCcccc Q lcl|Aclame:pro 57 TQRR--RGPAGFY 67 (68) Q Consensus 57 ~~~r--R~Pag~~ 67 (68) .... ++-++|+ T Consensus 103 ~~~~~~~G~v~Fl 115 (115) T protein:vir:95 103 DGSVREKGKVMFL 115 (115) T ss_pred cCCccCCcceeeC Confidence 5443 4568888 No 7 >protein:vir:105776 Length: 133 # NCBI annotation: gp11 # Family: family:all:10997 # MgeID: mge:1501 # MgeName: ES18 # Cross-refs: genbank:acc:YP_224149;genbank:gi:62362224;genbank:GeneID:3342529 Probab=18.35 E-value=3.2 Score=17.83 Aligned_cols=68 Identities=18% Similarity=0.155 Sum_probs=39.9 Q ss_pred CcHHHHHH----HH--------HHHHHHHhhCCeeEEEEc----CCeEEEeeccc--hHHHHHHHHHHHHH-----h-CC Q lcl|Aclame:pro 1 MTRQEELA----AA--------RAALHDLMTGKRVATVQK----DGRRVEFTATS--VSDLKKYIAELEVQ-----T-GM 56 (68) Q Consensus 1 mtl~~~L~----eA--------~~A~h~L~tG~~vv~v~~----~gr~V~Yt~An--~~~L~~YI~~L~~~-----l-g~ 56 (68) -++++.|+ |+ -.++-.+..|.+.++=|. -+|+.+|...+ ..+|..-+..|... | .. T Consensus 31 nsi~~cLdagY~e~tq~LI~lya~~LlA~~~g~R~IsSQ~APSGASrSF~Y~~~~~~~~~l~~~L~~lD~~gCt~~Lip~ 110 (133) T protein:vir:10 31 NSIQECLDAHYPPATALLIQSYLLGLMALGQGDRYISSQTAPNGASRSFRYQSFADRWKGALSLLRGADKFRCANGLIPP 110 (133) T ss_pred hhHHHHHhCCCCHHHHHHHHHHHHHHHhhccCCceeecccCCccccccccccCCCccHHHHHHHHHhhhhccccccccCC Confidence 22222221 22 235556667777666543 34999999987 66677777777643 2 22 Q ss_pred CCCCCCCccccC Q lcl|Aclame:pro 57 TQRRRGPAGFYV 68 (68) Q Consensus 57 ~~~rR~Pag~~~ 68 (68) ....+.|+|||. T Consensus 111 d~~~~a~vG~f~ 122 (133) T protein:vir:10 111 DPTNTAFAGIWI 122 (133) T ss_pred Cccccccceeee Confidence 334566788887 No 8 >protein:vir:96750 Length: 176 # NCBI annotation: putative phage-related protein # Family: family:all:3872 # MgeID: mge:1628 # MgeName: VP882 # Cross-refs: genbank:acc:YP_001039816;genbank:gi:126010851;genbank:GeneID:5076260 Probab=15.67 E-value=3.9 Score=17.36 Aligned_cols=65 Identities=12% Similarity=0.185 Sum_probs=34.5 Q ss_pred CcHHHHHHHHHHHHHHHhhCCee---EEEEcCCeEEEeeccchHHHHHHH----HHHHHHhCCCCCCCCCccccC Q lcl|Aclame:pro 1 MTRQEELAAARAALHDLMTGKRV---ATVQKDGRRVEFTATSVSDLKKYI----AELEVQTGMTQRRRGPAGFYV 68 (68) Q Consensus 1 mtl~~~L~eA~~A~h~L~tG~~v---v~v~~~gr~V~Yt~An~~~L~~YI----~~L~~~lg~~~~rR~Pag~~~ 68 (68) ---.-.-.-+.+|..+.+-|+.- -+.+-|||++.|++ |++|...= .++.++. ...++|+|.|=.| T Consensus 100 ~D~Rsha~~~LdAIeAvLe~RAt~dQ~~y~IngR~L~rtp--I~eLlkLR~~yr~e~arE~-~~s~~~~~~g~~v 171 (176) T protein:vir:96 100 VDARSHAKRMLDAIEATLEKRATRDQQSYEIEGRRLDRIP--IPELLKLRDRYRREHQREL-EQAGLRPRRQSFI 171 (176) T ss_pred CCCchHHHHHHHHHHHHHhccccccceeeEecCeeeeccC--HHHHHHHHHHHHHHHHHHh-HhhcCCCCCCcee Confidence 01111111222334444445444 55667999999986 66776543 4444433 3446676777666 No 9 >protein:vir:6378 Length: 346 # NCBI annotation: capsid protein E # Family: family:all:1021 # MgeID: mge:133 # MgeName: BcepNazgul # Cross-refs: genbank:acc:NP_918991;genbank:gi:34610166;genbank:GeneID:2559600 Probab=12.59 E-value=5 Score=16.75 Aligned_cols=63 Identities=11% Similarity=0.079 Sum_probs=32.2 Q ss_pred CcHHHHHH--------HH---------HHHHHHHhhCCeeE--------EEEcC---CeEEEeeccc---------hHHH Q lcl|Aclame:pro 1 MTRQEELA--------AA---------RAALHDLMTGKRVA--------TVQKD---GRRVEFTATS---------VSDL 43 (68) Q Consensus 1 mtl~~~L~--------eA---------~~A~h~L~tG~~vv--------~v~~~---gr~V~Yt~An---------~~~L 43 (68) ++.++++. +. -++...|.+|+-.+ .|++| +..++.|.+. +++| T Consensus 102 ~~~~~~~~~~i~~~~~~l~~~i~~~~E~m~~~al~~gki~~~g~~~~~~~vdfg~~~~~~~~lt~~~~W~~~~adp~~di 181 (346) T protein:vir:63 102 MSLQERFQAVVADSQLEQRQRIENRIEWMCAMATIYGYVDVVGEAFPMQRVDFGRDPALTVQLTGGAAWDQATSDPLGNI 181 (346) T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeeCCceeEEEEeeCCCccceeeecccccCCCCCCCHHHHH Confidence 33333221 11 12344555554221 23332 1234444332 7889 Q ss_pred HHHHHHHHHHhCCCCCCCCCccccC Q lcl|Aclame:pro 44 KKYIAELEVQTGMTQRRRGPAGFYV 68 (68) Q Consensus 44 ~~YI~~L~~~lg~~~~rR~Pag~~~ 68 (68) .+++..++...|. .|..++| T Consensus 182 ~~~~~~~~~~~g~-----~~~~~i~ 201 (346) T protein:vir:63 182 QTMRTTAWKKSNS-----TITRLTM 201 (346) T ss_pred HHHHHHHHHccCC-----ceEEEEE Confidence 9999999888773 3666666 No 10 >protein:vir:106596 Length: 128 # NCBI annotation: ORF042 # Family: family:all:372 # MgeID: mge:1557 # MgeName: 187 # Cross-refs: genbank:acc:YP_239495;genbank:gi:66395254;genbank:GeneID:4555750 Probab=11.20 E-value=5.7 Score=16.43 Aligned_cols=63 Identities=21% Similarity=0.312 Sum_probs=36.4 Q ss_pred CcHHHHHHHHHHHHHHHhhCC---------------------------eeEEEEcCCeEEEeeccchHHHHHHHHHHHHH Q lcl|Aclame:pro 1 MTRQEELAAARAALHDLMTGK---------------------------RVATVQKDGRRVEFTATSVSDLKKYIAELEVQ 53 (68) Q Consensus 1 mtl~~~L~eA~~A~h~L~tG~---------------------------~vv~v~~~gr~V~Yt~An~~~L~~YI~~L~~~ 53 (68) =-|+.-+.+|.+++-. -+|. ...|=|.+|.|++|.. .++.-|...|++- T Consensus 38 ~lL~~lI~~a~~~i~~-~l~~~~~~iP~~L~~Iv~evaVkryNR~g~EG~~S~SeeG~S~tf~d---nd~~~Y~~~L~~y 113 (128) T protein:vir:10 38 KQLNSIINNVAAELLS-RLPVDTISIPDKLQFIVVEVSTKRYNRIGAEGMSTDSQDGRSNTFER---NDFEEYQSIIDAL 113 (128) T ss_pred hHHHHHHHHHHHHHHH-HcCCChhhhhhhHHHHHHHHHHHHhcccCccCcceeeeCceeeeecc---CCcchhHHHHHHH Confidence 1234444555544332 2221 2345667999999954 4666676666666 Q ss_pred hCC-CCCCCCCcccc Q lcl|Aclame:pro 54 TGM-TQRRRGPAGFY 67 (68) Q Consensus 54 lg~-~~~rR~Pag~~ 67 (68) +.. ....++-++|| T Consensus 114 ~~~~~~~~kG~v~F~ 128 (128) T protein:vir:10 114 YPKLDSSERGSVNFY 128 (128) T ss_pred HhhccCCCCCceeeC Confidence 543 33456778999 Done!