Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : PegLeg | Genbank acc : NC_021299

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 10) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 138

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	18	lcl\|NC_021299.1_cdsid_YP_008050950.1	HHsearch (proba=100.00%)
Portal	15	lcl\|NC_021299.1_cdsid_YP_008050947.1	HHsearch (proba=100.00%)
TermL	14	lcl\|NC_021299.1_cdsid_YP_008050946.1	Blast (e-value=1e-113)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	19	lcl\|NC_021299.1_cdsid_YP_008050951.1	HHsearch (proba=100.00%)
Hc1	20	lcl\|NC_021299.1_cdsid_YP_008050952.1	HHsearch (proba=100.00%)
Ne1	21	lcl\|NC_021299.1_cdsid_YP_008050953.1	HHsearch (proba=100.00%)
Tc1	22	lcl\|NC_021299.1_cdsid_YP_008050954.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:99075 protein:vir:102605 protein:vir:105822	Wildcat Llij PMC	45 % 19 % 19 %
Portal	protein:vir:99072 protein:vir:2500 protein:vir:98444	Wildcat TM4 VWB	39 % 24 % 17 %
TermL	protein:vir:99071 protein:vir:2499 protein:vir:8098	Wildcat TM4 Che9c	43 % 28 % 28 %
Ad1	protein:vir:99002 protein:vir:9576 protein:vir:98481	Wildcat SM1 VWB	40 % 21 % 20 %
Hc1	protein:vir:99003 protein:vir:107669 protein:vir:79639	Wildcat T1 TLS	40 % 22 % 21 %
Ne1	protein:vir:99004	Wildcat	36 %
Tc1	protein:vir:99005 protein:vir:98426 protein:vir:8107	Wildcat VWB Che9c	38 % 20 % 16 %