Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : ENT90 | Genbank acc : NC_019932

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 9) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 60

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	19	lcl\|NC_019932.1_cdsid_YP_007238029.1	HHsearch (proba=100.00%)
Portal	28	lcl\|NC_019932.1_cdsid_YP_007238038.1	HHsearch (proba=100.00%)
TermL	23	lcl\|NC_019932.1_cdsid_YP_007238033.1	Blast (e-value=0)
MTP	53	lcl\|NC_019932.1_cdsid_YP_007238063.1	Blast (e-value=2e-61)
Sheath	54	lcl\|NC_019932.1_cdsid_YP_007238064.1	HHsearch (proba=100.00%)
Ad1	17	lcl\|NC_019932.1_cdsid_YP_007238027.1	HHsearch (proba=100.00%)
Hc1	NOT FOUND
Ne1	8	lcl\|NC_019932.1_cdsid_YP_007238018.1	HHsearch (proba=100.00%)
Tc1	10	lcl\|NC_019932.1_cdsid_YP_007238020.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Tc1<->Ad1	7	4
Ne1<->Ad1	9	4

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:5694 protein:vir:2016 protein:vir:6061	L-413C P2 WPhi	74 % 74 % 73 %
Portal	protein:vir:2013 protein:vir:6058 protein:vir:5691	P2 WPhi L-413C	69 % 69 % 69 %
TermL	protein:vir:98555 protein:vir:2014 protein:vir:6059	PSP3 P2 WPhi	72 % 71 % 71 %
MTP	protein:vir:2036 protein:vir:6080 protein:vir:5712	P2 WPhi L-413C	66 % 66 % 65 %
Sheath	protein:vir:1845 protein:vir:98553 protein:vir:6079	186 PSP3 WPhi	80 % 79 % 78 %
Ad1	protein:vir:1831 protein:vir:98558 protein:vir:2018	186 PSP3 P2	51 % 49 % 49 %
Ne1	protein:vir:1838 protein:vir:98557 protein:vir:2026	186 PSP3 P2	65 % 61 % 45 %
Tc1	protein:vir:2025 protein:vir:5702 protein:vir:98561	P2 L-413C PSP3	59 % 58 % 57 %