BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|NC_019932.1_cdsid_YP_007238033.1 [gene=G184_gp54] [protein=terminase ATPase subunit] [protein_id=YP_007238033.1] [location=10472..12235] (587 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|4395|lcl|protein:vir:98555 Length: 589 # NCBI annotation: gp3... 902 0.0 gi|18685|lcl|protein:vir:5692 Length: 590 # NCBI annotation: gpP... 883 0.0 gi|16979|lcl|protein:vir:6059 Length: 590 # NCBI annotation: gpP... 883 0.0 gi|17332|lcl|protein:vir:2014 Length: 590 # NCBI annotation: gpP... 882 0.0 gi|11877|lcl|protein:vir:79128 Length: 593 # NCBI annotation: te... 763 0.0 gi|10934|lcl|protein:vir:78195 Length: 601 # NCBI annotation: gp... 730 0.0 gi|9890|lcl|protein:vir:103970 Length: 601 # NCBI annotation: ph... 729 0.0 gi|11926|lcl|protein:vir:79177 Length: 589 # NCBI annotation: gp... 729 0.0 gi|15673|lcl|protein:vir:1151 Length: 594 # NCBI annotation: pre... 715 0.0 gi|2172|lcl|protein:vir:100329 Length: 605 # NCBI annotation: te... 667 0.0 gi|10658|lcl|protein:vir:268 Length: 605 # NCBI annotation: puta... 463 e-132 gi|16385|lcl|protein:vir:3744 Length: 607 # NCBI annotation: orf... 437 e-124 gi|19904|lcl|protein:vir:3781 Length: 607 # NCBI annotation: ter... 437 e-124 gi|2683|lcl|protein:vir:98854 Length: 603 # NCBI annotation: hyp... 427 e-121 gi|11523|lcl|protein:vir:78781 Length: 604 # NCBI annotation: pu... 424 e-120 gi|13742|lcl|protein:vir:1826 Length: 248 # NCBI annotation: W p... 150 5e-38 gi|10609|lcl|protein:vir:106508 Length: 492 # NCBI annotation: P... 40 7e-05 gi|17903|lcl|protein:vir:1080 Length: 604 # NCBI annotation: ter... 40 9e-05 gi|1545|lcl|protein:vir:100880 Length: 630 # NCBI annotation: pu... 34 0.004 gi|3997|lcl|protein:vir:100199 Length: 629 # NCBI annotation: pu... 34 0.004 gi|17412|lcl|protein:vir:2682 Length: 563 # NCBI annotation: ter... 33 0.008 gi|11420|lcl|protein:vir:78630 Length: 563 # NCBI annotation: pu... 33 0.008 gi|3108|lcl|protein:vir:94427 Length: 563 # NCBI annotation: ORF... 33 0.008 gi|2221|lcl|protein:vir:93883 Length: 563 # NCBI annotation: ORF... 33 0.008 gi|8807|lcl|protein:vir:96981 Length: 563 # NCBI annotation: ORF... 33 0.012 gi|14327|lcl|protein:vir:9358 Length: 453 # NCBI annotation: ter... 30 0.061 gi|26461|lcl|protein:vir:573 Length: 589 # NCBI annotation: unkn... 30 0.099 gi|830|lcl|protein:vir:93598 Length: 553 # NCBI annotation: puta... 28 0.44 gi|15201|lcl|protein:vir:7028 Length: 631 # NCBI annotation: lar... 26 1.6 gi|291|lcl|protein:vir:3608 Length: 462 # NCBI annotation: TerL ... 25 3.7 gi|3763|lcl|protein:vir:107694 Length: 527 # NCBI annotation: pu... 24 3.7 gi|13633|lcl|protein:vir:3963 Length: 462 # NCBI annotation: put... 24 3.9 gi|17621|lcl|protein:vir:816 Length: 568 # NCBI annotation: hypo... 23 7.2 gi|25680|lcl|protein:vir:10116 Length: 568 # NCBI annotation: hy... 23 7.2 gi|51|lcl|protein:vir:3295 Length: 568 # NCBI annotation: putati... 23 7.2 gi|26240|lcl|protein:vir:2763 Length: 568 # NCBI annotation: hyp... 23 7.2 gi|25849|lcl|protein:vir:9949 Length: 568 # NCBI annotation: hyp... 23 7.2 gi|1476|lcl|protein:vir:104436 Length: 568 # NCBI annotation: pu... 23 7.2 >gi|4395|lcl|protein:vir:98555 Length: 589 # NCBI annotation: gp3 # Family: family:all:169 # MgeID: mge:1533 # MgeName: PSP3 # Cross-refs: genbank:acc:NP_958058;genbank:gi:41057355;genbank:GeneID :2744226 Length = 589 Score = 902 bits (2330), Expect = 0.0, Method: Compositional matrix adjust. Identities = 427/584 (73%), Positives = 486/584 (83%), Gaps = 1/584 (0%) Query: 4 TPTTTISDPRRQAALLYWQGYSVRQIAETLSIKTPTVQSWKLRDAWEDVAPISRVEASME 63 T TT + DPRRQA+LLYWQG+SV QIAE L +K PTVQSWK RD W+ +APISRVE+S+E Sbjct: 5 TDTTLLHDPRRQASLLYWQGFSVPQIAEMLQVKRPTVQSWKQRDGWDGIAPISRVESSLE 64 Query: 64 ARLIQLILKEVKGNGDYKEIDALGRQIERLARVERYRSSGNEADLNPNVRNRNKGERQPV 123 ARLIQLI K K GD+KEID LGRQIERLARV RY +GNEADLNPNV NRNKGER+ Sbjct: 65 ARLIQLIAKPQKSGGDFKEIDLLGRQIERLARVNRYSQTGNEADLNPNVANRNKGERKRP 124 Query: 124 VKNVFSDEQAEKLTGLFMDNCFEYQLNWHKAGLDHRIRNILKSRQIGATFYFAREALIDA 183 KN FSDE KL +F D FEYQL W++AGL HRIR+ILKSRQIGATFYF+REAL+ A Sbjct: 125 KKNFFSDEAVAKLEEIFFDQSFEYQLQWYRAGLAHRIRDILKSRQIGATFYFSREALLRA 184 Query: 184 LTTGRNQIFLSASKAQAHVFKNYIIDFARQVDVDLKGDPIVLPN-GARLIFLGTNVRTAQ 242 L TG NQIFLSASK QA+VF+ YII FAR VDVDL GDPIV+ N GA+LIFLGTN TAQ Sbjct: 185 LKTGHNQIFLSASKTQAYVFREYIIQFARLVDVDLTGDPIVIGNNGAKLIFLGTNSNTAQ 244 Query: 243 SYTGNLYLDEYFWIPKFQELRKVASGMSLHKKWRTTYFSTPSSLSHSAYPFWSGELFNKG 302 S+ G+LY+DE FWIP FQ+LRKVASGM+ K R+TYFSTPS+L+H AYPFWSGELFNKG Sbjct: 245 SHNGDLYVDEIFWIPNFQKLRKVASGMASQKHLRSTYFSTPSTLAHGAYPFWSGELFNKG 304 Query: 303 RRSKADRIEIDLSHTHLAKGALCGDGQWRQIVTVEDALTGGCNLFDLDQLQLEYSPSEYQ 362 R S ADRIEID+SH+ LA G LC DGQWRQIVT+EDAL GGC LFDLDQL+ E S +++ Sbjct: 305 RASAADRIEIDISHSALAGGLLCADGQWRQIVTIEDALAGGCTLFDLDQLRRENSDEDFK 364 Query: 363 NLLMCEFVDDEASVFPFAELQTCMIDSLEEWSDFNPYLPRPFDYRPVWIGYDPSHTGDSA 422 NL MCEFVDD+ASVFPF ELQ CM+D +E W DF P+ PF RPVWIGYDPSHTGDSA Sbjct: 365 NLFMCEFVDDKASVFPFEELQRCMVDVMETWEDFAPFADHPFGSRPVWIGYDPSHTGDSA 424 Query: 423 GCAVIAPPLVAGGKFRVLERHQWRGMDFAAQAKSIEDLTKKYTVEYIGVDATGIGQGVFQ 482 GC V+APP+V+GGKFR+LERHQW+GMDFAAQA+ I LT+KY VEYIG+DATG+G GVFQ Sbjct: 425 GCVVLAPPVVSGGKFRMLERHQWKGMDFAAQAEGIRRLTEKYNVEYIGIDATGLGLGVFQ 484 Query: 483 LVRQFYPAAREIRYSPEVKTAMVLKAKDTISSGRLEYDAGQTDITQSFMAIRKTMTASGN 542 LVR FYPAAR IRY+PE+KTAMVLKAKDTI G LEYDAG TD+TQSFM+IRKTMT+SG Sbjct: 485 LVRSFYPAARGIRYTPEMKTAMVLKAKDTIRRGCLEYDAGATDVTQSFMSIRKTMTSSGR 544 Query: 543 RSTYEASRSEDASHADVAWAIMHALLNEPLTAASGGANPSILEF 586 +TYEASR+E+ASHAD+AWA MHALLNEPL+A SG SILEF Sbjct: 545 SATYEASRTEEASHADIAWATMHALLNEPLSAGSGMQPKSILEF 588 >gi|18685|lcl|protein:vir:5692 Length: 590 # NCBI annotation: gpP # Family: family:all:169 # MgeID: mge:120 # MgeName: L-413C # Cross-refs: genbank:acc:NP_839851;genbank:gi:30065706;genbank:GeneID :1260600 Length = 590 Score = 883 bits (2282), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/586 (71%), Positives = 481/586 (82%), Gaps = 2/586 (0%) Query: 4 TPTTTISDPRRQAALLYWQGYSVRQIAETLSIKTPTVQSWKLRDAWEDVAPISRVEASME 63 T TT + DPRRQAALLYWQG+SV QIA L +K PTVQSWK RD W+ VAPISRVE S+E Sbjct: 5 TDTTLLHDPRRQAALLYWQGFSVPQIAAMLQMKRPTVQSWKQRDGWDSVAPISRVEMSLE 64 Query: 64 ARLIQLILKEVKGNGDYKEIDALGRQIERLARVERYRSSGNEADLNPNVRNRNKGERQPV 123 ARL QLI+K K GD+KEID LGRQIERLARV RY +GNEADLNPNV NRNKG R+ Sbjct: 65 ARLTQLIIKPQKTGGDFKEIDLLGRQIERLARVNRYSQTGNEADLNPNVANRNKGGRRKP 124 Query: 124 VKNVFSDEQAEKLTGLFMDNCFEYQLNWHKAGLDHRIRNILKSRQIGATFYFAREALIDA 183 KN FSDE EKL +F + FEYQL+W++AGL+HRIR+ILKSRQIGATFYF+REAL+ A Sbjct: 125 KKNFFSDEAIEKLEQIFFEQSFEYQLHWYRAGLEHRIRDILKSRQIGATFYFSREALLRA 184 Query: 184 LTTGRNQIFLSASKAQAHVFKNYIIDFARQVDVDLKGDPIVLPN-GARLIFLGTNVRTAQ 242 L TG NQIFLSASK QA+VF+ YII FAR VDVDL GDPIVL N GA+LIFLGTN TAQ Sbjct: 185 LKTGHNQIFLSASKTQAYVFREYIIAFARLVDVDLTGDPIVLGNNGAKLIFLGTNSNTAQ 244 Query: 243 SYTGNLYLDEYFWIPKFQELRKVASGMSLHKKWRTTYFSTPSSLSHSAYPFWSGELFNKG 302 S+ G+LY+DE FWIP FQ LRKVASGM+ R+TYFSTPS+L+H AYPFWSGELFN+G Sbjct: 245 SHNGDLYVDEIFWIPNFQVLRKVASGMASQSHLRSTYFSTPSTLAHDAYPFWSGELFNRG 304 Query: 303 RRSKADRIEIDLSHTHLAKGALCGDGQWRQIVTVEDALTGGCNLFDLDQLQLEYSPSEYQ 362 R S A+R+EID+SH LA G LC DGQWRQIVT+EDAL GGC LFD++QL+ E S +++ Sbjct: 305 RASAAERVEIDVSHNALAGGLLCADGQWRQIVTIEDALKGGCTLFDIEQLKRENSADDFK 364 Query: 363 NLLMCEFVDDEASVFPFAELQTCMIDSLEEWSDFNPYLPRPFDYRPVWIGYDPSHTGDSA 422 NL MCEFVDD+ASVFPF ELQ CM+D+LEEW D+ P+ PF RPVWIGYDPSH GDSA Sbjct: 365 NLFMCEFVDDKASVFPFEELQRCMVDTLEEWEDYAPFAANPFGSRPVWIGYDPSHRGDSA 424 Query: 423 GCAVIAPPLVAGGKFRVLERHQWRGMDFAAQAKSIEDLTKKYTVEYIGVDATGIGQGVFQ 482 GC V+APP+VAGGKFR+LERHQW+GMDFA QA+SI LT+KY VEYIG+DATG+G GVFQ Sbjct: 425 GCVVLAPPVVAGGKFRILERHQWKGMDFATQAESIRKLTEKYNVEYIGIDATGLGVGVFQ 484 Query: 483 LVRQFYPAAREIRYSPEVKTAMVLKAKDTISSGRLEYDAGQTDITQSFMAIRKTMTASGN 542 LVR FYPAAR+IRY+PE+KTAMVLKAKD I G LEYD TDIT SFMAIRKTMT+SG Sbjct: 485 LVRSFYPAARDIRYTPEMKTAMVLKAKDVIRRGCLEYDVSATDITSSFMAIRKTMTSSGR 544 Query: 543 RSTYEASRSEDASHADVAWAIMHALLNEPLTAA-SGGANPSILEFY 587 +TYEASRSE+ASHAD+AWA MHALLNEPLTA S +ILEFY Sbjct: 545 SATYEASRSEEASHADLAWATMHALLNEPLTAGISTPLTSTILEFY 590 >gi|16979|lcl|protein:vir:6059 Length: 590 # NCBI annotation: gpP # Family: family:all:169 # MgeID: mge:126 # MgeName: WPhi # Cross-refs: genbank:acc:NP_878200;genbank:gi:33438899;genbank:GeneID :1457734 Length = 590 Score = 883 bits (2282), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/586 (71%), Positives = 481/586 (82%), Gaps = 2/586 (0%) Query: 4 TPTTTISDPRRQAALLYWQGYSVRQIAETLSIKTPTVQSWKLRDAWEDVAPISRVEASME 63 T TT + DPRRQAALLYWQG+SV QIA L +K PTVQSWK RD W+ VAPISRVE S+E Sbjct: 5 TDTTLLHDPRRQAALLYWQGFSVPQIAAMLQMKRPTVQSWKQRDGWDSVAPISRVEMSLE 64 Query: 64 ARLIQLILKEVKGNGDYKEIDALGRQIERLARVERYRSSGNEADLNPNVRNRNKGERQPV 123 ARL QLI+K K GD+KEID LGRQIERLARV RY +GNEADLNPNV NRNKG R+ Sbjct: 65 ARLTQLIIKPQKTGGDFKEIDLLGRQIERLARVNRYSQTGNEADLNPNVANRNKGGRRKP 124 Query: 124 VKNVFSDEQAEKLTGLFMDNCFEYQLNWHKAGLDHRIRNILKSRQIGATFYFAREALIDA 183 KN FSDE EKL +F + FEYQL+W++AGL+HRIR+ILKSRQIGATFYF+REAL+ A Sbjct: 125 KKNFFSDEAIEKLEQIFFEQSFEYQLHWYRAGLEHRIRDILKSRQIGATFYFSREALLRA 184 Query: 184 LTTGRNQIFLSASKAQAHVFKNYIIDFARQVDVDLKGDPIVLPN-GARLIFLGTNVRTAQ 242 L TG NQIFLSASK QA+VF+ YII FAR VDVDL GDPIVL N GA+LIFLGTN TAQ Sbjct: 185 LKTGHNQIFLSASKTQAYVFREYIIAFARLVDVDLTGDPIVLGNNGAKLIFLGTNSNTAQ 244 Query: 243 SYTGNLYLDEYFWIPKFQELRKVASGMSLHKKWRTTYFSTPSSLSHSAYPFWSGELFNKG 302 S+ G+LY+DE FWIP FQ LRKVASGM+ R+TYFSTPS+L+H AYPFWSGELFN+G Sbjct: 245 SHNGDLYVDEIFWIPNFQVLRKVASGMASQSHLRSTYFSTPSTLAHDAYPFWSGELFNRG 304 Query: 303 RRSKADRIEIDLSHTHLAKGALCGDGQWRQIVTVEDALTGGCNLFDLDQLQLEYSPSEYQ 362 R S A+R+EID+SH LA G LC DGQWRQIVT+EDAL GGC LFD++QL+ E S +++ Sbjct: 305 RASAAERVEIDVSHNALAGGLLCADGQWRQIVTIEDALKGGCTLFDIEQLKRENSADDFK 364 Query: 363 NLLMCEFVDDEASVFPFAELQTCMIDSLEEWSDFNPYLPRPFDYRPVWIGYDPSHTGDSA 422 NL MCEFVDD+ASVFPF ELQ CM+D+LEEW D+ P+ PF RPVWIGYDPSH GDSA Sbjct: 365 NLFMCEFVDDKASVFPFEELQRCMVDTLEEWEDYAPFAANPFGSRPVWIGYDPSHRGDSA 424 Query: 423 GCAVIAPPLVAGGKFRVLERHQWRGMDFAAQAKSIEDLTKKYTVEYIGVDATGIGQGVFQ 482 GC V+APP+VAGGKFR+LERHQW+GMDFA QA+SI LT+KY VEYIG+DATG+G GVFQ Sbjct: 425 GCVVLAPPVVAGGKFRILERHQWKGMDFATQAESIRKLTEKYNVEYIGIDATGLGVGVFQ 484 Query: 483 LVRQFYPAAREIRYSPEVKTAMVLKAKDTISSGRLEYDAGQTDITQSFMAIRKTMTASGN 542 LVR FYPAAR+IRY+PE+KTAMVLKAKD I G LEYD TDIT SFMAIRKTMT+SG Sbjct: 485 LVRSFYPAARDIRYTPEMKTAMVLKAKDVIRRGCLEYDVSATDITSSFMAIRKTMTSSGR 544 Query: 543 RSTYEASRSEDASHADVAWAIMHALLNEPLTAA-SGGANPSILEFY 587 +TYEASRSE+ASHAD+AWA MHALLNEPLTA S +ILEFY Sbjct: 545 SATYEASRSEEASHADLAWATMHALLNEPLTAGISTPLTSTILEFY 590 >gi|17332|lcl|protein:vir:2014 Length: 590 # NCBI annotation: gpP # Family: family:all:169 # MgeID: mge:315 # MgeName: P2 # Cross-refs: genbank:acc:NP_046758;genbank:gi:9630329;genbank:GeneID: 1261531 Length = 590 Score = 882 bits (2278), Expect = 0.0, Method: Compositional matrix adjust. Identities = 420/586 (71%), Positives = 481/586 (82%), Gaps = 2/586 (0%) Query: 4 TPTTTISDPRRQAALLYWQGYSVRQIAETLSIKTPTVQSWKLRDAWEDVAPISRVEASME 63 T TT + DPRRQAALLYWQG+SV QIA L +K PTVQSWK RD W+ VAPISRVE S+E Sbjct: 5 TDTTLLHDPRRQAALLYWQGFSVPQIAAMLQMKRPTVQSWKQRDGWDSVAPISRVEMSLE 64 Query: 64 ARLIQLILKEVKGNGDYKEIDALGRQIERLARVERYRSSGNEADLNPNVRNRNKGERQPV 123 ARL QLI+K K GD+KEID LGRQIERLARV RY +GNEADLNPNV NRNKG R+ Sbjct: 65 ARLTQLIIKPQKTGGDFKEIDLLGRQIERLARVNRYSQTGNEADLNPNVANRNKGGRRKP 124 Query: 124 VKNVFSDEQAEKLTGLFMDNCFEYQLNWHKAGLDHRIRNILKSRQIGATFYFAREALIDA 183 KN FSDE EKL +F + F+YQL+W++AGL+HRIR+ILKSRQIGATFYF+REAL+ A Sbjct: 125 KKNFFSDEAIEKLEQIFFEQSFDYQLHWYRAGLEHRIRDILKSRQIGATFYFSREALLRA 184 Query: 184 LTTGRNQIFLSASKAQAHVFKNYIIDFARQVDVDLKGDPIVL-PNGARLIFLGTNVRTAQ 242 L TG NQIFLSASK QA+VF+ YII FAR VDVDL GDPIVL NGA+LIFLGTN TAQ Sbjct: 185 LKTGHNQIFLSASKTQAYVFREYIIAFARLVDVDLTGDPIVLGNNGAKLIFLGTNSNTAQ 244 Query: 243 SYTGNLYLDEYFWIPKFQELRKVASGMSLHKKWRTTYFSTPSSLSHSAYPFWSGELFNKG 302 S+ G+LY+DE FWIP FQ LRKVASGM+ R+TYFSTPS+L+H AYPFWSGELFN+G Sbjct: 245 SHNGDLYVDEIFWIPNFQVLRKVASGMASQSHLRSTYFSTPSTLAHDAYPFWSGELFNRG 304 Query: 303 RRSKADRIEIDLSHTHLAKGALCGDGQWRQIVTVEDALTGGCNLFDLDQLQLEYSPSEYQ 362 R S A+R+EID+SH LA G LC DGQWRQIVT+EDAL GGC LFD++QL+ E S +++ Sbjct: 305 RASAAERVEIDVSHNALAGGLLCADGQWRQIVTIEDALKGGCTLFDIEQLKRENSADDFK 364 Query: 363 NLLMCEFVDDEASVFPFAELQTCMIDSLEEWSDFNPYLPRPFDYRPVWIGYDPSHTGDSA 422 NL MCEFVDD+ASVFPF ELQ CM+D+LEEW D+ P+ PF RPVWIGYDPSH GDSA Sbjct: 365 NLFMCEFVDDKASVFPFEELQRCMVDTLEEWEDYAPFAANPFGSRPVWIGYDPSHRGDSA 424 Query: 423 GCAVIAPPLVAGGKFRVLERHQWRGMDFAAQAKSIEDLTKKYTVEYIGVDATGIGQGVFQ 482 GC V+APP+VAGGKFR+LERHQW+GMDFA QA+SI LT+KY VEYIG+DATG+G GVFQ Sbjct: 425 GCVVLAPPVVAGGKFRILERHQWKGMDFATQAESIRKLTEKYNVEYIGIDATGLGVGVFQ 484 Query: 483 LVRQFYPAAREIRYSPEVKTAMVLKAKDTISSGRLEYDAGQTDITQSFMAIRKTMTASGN 542 LVR FYPAAR+IRY+PE+KTAMVLKAKD I G LEYD TDIT SFMAIRKTMT+SG Sbjct: 485 LVRSFYPAARDIRYTPEMKTAMVLKAKDVIRRGCLEYDVSATDITSSFMAIRKTMTSSGR 544 Query: 543 RSTYEASRSEDASHADVAWAIMHALLNEPLTAA-SGGANPSILEFY 587 +TYEASRSE+ASHAD+AWA MHALLNEPLTA S +ILEFY Sbjct: 545 SATYEASRSEEASHADLAWATMHALLNEPLTAGISTPLTSTILEFY 590 >gi|11877|lcl|protein:vir:79128 Length: 593 # NCBI annotation: terminase # Family: family:all:169 # MgeID: mge:1863 # MgeName: RSA1 # Cross-refs: genbank:acc:YP_001165255;genbank:gi:145708080;genbank:Ge neID:5247139 Length = 593 Score = 763 bits (1969), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/592 (63%), Positives = 441/592 (74%), Gaps = 9/592 (1%) Query: 2 NMTPTTTIS-----DPRRQAALLYWQGYSVRQIAETLSIKTPTVQSWKLRDAWEDVAPIS 56 + P ++S DPRR A LYWQGY V +IAE L +K TV SWK RD W+ + Sbjct: 3 TLPPIASLSFDPEKDPRRIAGTLYWQGYWVARIAEMLGVKPVTVHSWKRRDGWDAADAVE 62 Query: 57 RVEASMEARLIQLILKEVKGNGDYKEIDALGRQIERLARVERYRSSGNEADLNPNVRNRN 116 RV S+E R+ QL+ KEVK DYKEID LGRQ+ER+ARV RY +SGNE DLNP V NRN Sbjct: 63 RVANSIEERMAQLVAKEVKEGRDYKEIDLLGRQMERMARVRRYEASGNETDLNPKVANRN 122 Query: 117 KGERQPVVKNVFSDEQAEKLTGLFMDNCFEYQLNWHKAGLDHRIRNILKSRQIGATFYFA 176 KG R +N S E+ +L F D+ F+YQ W++AG RIRN+LKSRQIGAT+YFA Sbjct: 123 KGPRSKPERNAISPEEQTQLLEAFRDSMFDYQRVWYEAGQVERIRNLLKSRQIGATWYFA 182 Query: 177 REALIDALTTGRNQIFLSASKAQAHVFKNYIIDFARQ-VDVDLKGDPIVLPNGARLIFLG 235 REA IDALTTGRNQIFLSASKAQAHVFK YII FA+ ++LKGDP+VLPNGA L FLG Sbjct: 183 REAFIDALTTGRNQIFLSASKAQAHVFKQYIIQFAKDAAGIELKGDPMVLPNGATLYFLG 242 Query: 236 TNVRTAQSYTGNLYLDEYFWIPKFQELRKVASGMSLHKKWRTTYFSTPSSLSHSAYPFWS 295 TN RTAQSY GNLY DEYFW+P+FQELRKVASGM++HK WR TYFSTPSSLSH AYPFWS Sbjct: 243 TNARTAQSYHGNLYFDEYFWVPRFQELRKVASGMAIHKHWRQTYFSTPSSLSHEAYPFWS 302 Query: 296 GELFNKGRRSKADRIEIDLSHTHLAKGALCGDGQWRQIVTVEDALTGGCNLFDLDQLQLE 355 G LFN+G ++K +I++DLSH L G C DGQWRQIVTVEDAL GGCNLFDLDQL+LE Sbjct: 303 GALFNRG-KAKDKQIKLDLSHAALRDGMRCADGQWRQIVTVEDALRGGCNLFDLDQLRLE 361 Query: 356 YSPSEYQNLLMCEFVDDEASVFPFAELQTCMIDSLEEWSDFNPYLPRPFDYRPVWIGYDP 415 YS ++ NLLMC F+DD ASVFP A L M+DS E W DF P+ PRPF RPVW+GYDP Sbjct: 362 YSELDFANLLMCVFIDDNASVFPLAMLMRGMVDSWEVWEDFRPFAPRPFGNRPVWVGYDP 421 Query: 416 S-HTGDSAGCAVIAPPLVAGGKFRVLERHQWRGMDFAAQAKSIEDLTKKYTVEYIGVDAT 474 + GDSA V+APPLV GGKFRVLERHQ+RG+D+ QA +I + ++Y V Y+G+D T Sbjct: 422 NGGGGDSAALVVVAPPLVPGGKFRVLERHQFRGIDYEEQAGAIRRVAERYDVAYVGIDRT 481 Query: 475 GIGQGVFQLVRQFYPAAREIRYSPEVKTAMVLKAKDTISSGRLEYDAGQTDITQSFMAIR 534 GIG VF+LV++F P A YS +VKTA+VLKA D IS GRLE+DAG TD SFM+I+ Sbjct: 482 GIGDAVFRLVQKFRPDAEGFTYSVDVKTALVLKAHDVISKGRLEFDAGWTDFAASFMSIK 541 Query: 535 KTMTASGNRSTYEASRSEDASHADVAWAIMHALLNEPLTAASGGANPSILEF 586 KT TA+G R TY+A RSED SHAD+AWA MHAL +EPL + N SILE Sbjct: 542 KTTTAAGGRVTYQAGRSEDTSHADLAWACMHALSHEPLEGVT-TTNTSILEI 592 >gi|10934|lcl|protein:vir:78195 Length: 601 # NCBI annotation: gp4, phage terminase, ATPase subunit # Family: family:all:169 # MgeID: mge:1848 # MgeName: phiE12-2 # Cross-refs: genbank:acc:YP_001111154;genbank:gi:134288710;genbank:Ge neID:4960655 Length = 601 Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/585 (59%), Positives = 437/585 (74%), Gaps = 5/585 (0%) Query: 5 PTTTISDPRRQAALLYWQGYSVRQIAETLSIKTPTVQSWKLRDAWEDVAPISRVEASMEA 64 P +D R+ A LYWQG+ + IA L IK TV SW R+ W+D P+ R+EAS+E Sbjct: 19 PHQLENDVRKVARTLYWQGWRIASIARHLDIKPATVASWCRREKWKDATPVERIEASLEV 78 Query: 65 RLIQLILKEVKGNGDYKEIDALGRQIERLARVERYRSSGNEADLNPNVRNRNKGERQPVV 124 RL+ LI KE K DYKEID LGRQ+ERLARV +Y +G E+DLNP + +RN G ++ Sbjct: 79 RLMVLIAKEKKDGADYKEIDLLGRQVERLARVRKYDETGKESDLNPKIASRNAGPKRRAP 138 Query: 125 KNVFSDEQAEKLTGLFMDNCFEYQLNWHKAGLDHRIRNILKSRQIGATFYFAREALIDAL 184 +N SDEQ +++ F D+ F+YQ W++ G D R RNILKSRQIGAT+YFAREAL+DAL Sbjct: 139 RNEISDEQHKRIIEAFRDSLFDYQKVWYRNG-DQRTRNILKSRQIGATWYFAREALVDAL 197 Query: 185 TTGRNQIFLSASKAQAHVFKNYIIDFARQV-DVDLKGDPIVLPNGARLIFLGTNVRTAQS 243 T RNQIFLSASKAQAHVFK YI FAR D++L GDPI+LP+GA L FLGTN RTAQS Sbjct: 198 DTDRNQIFLSASKAQAHVFKQYITQFARAAADIELTGDPIILPSGATLYFLGTNARTAQS 257 Query: 244 YTGNLYLDEYFWIPKFQELRKVASGMSLHKKWRTTYFSTPSSLSHSAYPFWSGELFNKGR 303 Y GN Y DEYFW+PKF+EL KVASGM++HK+WR TYFSTPSS++H AY FWSG N+GR Sbjct: 258 YHGNFYFDEYFWVPKFRELNKVASGMAMHKRWRKTYFSTPSSVTHEAYAFWSGAHANRGR 317 Query: 304 RSKADRIEIDLSHTHLAKGALCGDGQWRQIVTVEDALTGGCNLFDLDQLQLEYSPSEYQN 363 + +RI+ID SH L +G LC D QWRQIVTV DA+ GGC+LFD+D+L+ EYS E+ N Sbjct: 318 -AAGERIQIDTSHEALVRGMLCEDAQWRQIVTVLDAMAGGCDLFDIDELRREYSAEEFAN 376 Query: 364 LLMCEFVDDEASVFPFAELQTCMIDSLEEWSD-FNPYLPRPFDYRPVWIGYDPSHTGDSA 422 LLMC+F+DD SVF ++LQ CM+DS EEW+D F+P L RPF YR VW+GYDP+ TGDSA Sbjct: 377 LLMCQFIDDSLSVFKLSDLQRCMVDSWEEWADDFSPLLLRPFGYREVWVGYDPALTGDSA 436 Query: 423 GCAVIAPPLVAGGKFRVLERHQWRGMDFAAQAKSIEDLTKKYTVEYIGVDATGIGQGVFQ 482 G V+APP V G FRVLERHQ+RG DF QA +IE +T++Y V YI +D TG+GQGV+Q Sbjct: 437 GLVVVAPPRVDDGAFRVLERHQFRGNDFEEQAAAIEAITQRYNVGYIAIDTTGMGQGVYQ 496 Query: 483 LVRQFYPAAREIRYSPEVKTAMVLKAKDTISSGRLEYDAGQTDITQSFMAIRKTMTASGN 542 LVR+F+PAA + YSPEVKT +VLK + + +GRL++DAG TD+ +FMAI++TMTASG Sbjct: 497 LVRKFFPAAVALNYSPEVKTRLVLKGQSVVRNGRLQFDAGWTDLAAAFMAIKQTMTASGR 556 Query: 543 RSTYEASRSEDASHADVAWAIMHALLNEPLTAASGGANPSILEFY 587 ++TY A R+++ HAD+AWA +HA+ EPL A G + S EFY Sbjct: 557 QATYTAGRTDETGHADLAWACLHAIDREPL-AGGGIHSSSFTEFY 600 >gi|9890|lcl|protein:vir:103970 Length: 601 # NCBI annotation: phage terminase ATPase subunit # Family: family:all:169 # MgeID: mge:1665 # MgeName: phi52237 # Cross-refs: genbank:acc:YP_293751;genbank:gi:72537721;genbank:GeneID :3608097 Length = 601 Score = 729 bits (1883), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/585 (59%), Positives = 437/585 (74%), Gaps = 5/585 (0%) Query: 5 PTTTISDPRRQAALLYWQGYSVRQIAETLSIKTPTVQSWKLRDAWEDVAPISRVEASMEA 64 P +D R+ A LYWQG+ + IA L IK TV SW R+ W+D P+ R+EAS+E Sbjct: 19 PHQLENDVRKVARTLYWQGWRIASIARHLDIKPATVASWCRREKWKDATPVERIEASLEV 78 Query: 65 RLIQLILKEVKGNGDYKEIDALGRQIERLARVERYRSSGNEADLNPNVRNRNKGERQPVV 124 R++ LI KE K DYKEID LGRQ+ERLARV +Y +G E+DLNP + +RN G ++ Sbjct: 79 RMMVLIAKEKKDGADYKEIDLLGRQVERLARVRKYDETGKESDLNPKIASRNAGPKRRAP 138 Query: 125 KNVFSDEQAEKLTGLFMDNCFEYQLNWHKAGLDHRIRNILKSRQIGATFYFAREALIDAL 184 +N SDEQ +++ F D+ F+YQ W++ G D R RNILKSRQIGAT+YFAREAL+DAL Sbjct: 139 RNEISDEQHKRIIEAFRDSLFDYQKVWYRNG-DQRTRNILKSRQIGATWYFAREALVDAL 197 Query: 185 TTGRNQIFLSASKAQAHVFKNYIIDFAR-QVDVDLKGDPIVLPNGARLIFLGTNVRTAQS 243 T RNQIFLSASKAQAHVFK YI FAR D++L GDPI+LP+GA L FLGTN RTAQS Sbjct: 198 DTDRNQIFLSASKAQAHVFKQYITQFARGAADIELTGDPIILPSGATLYFLGTNARTAQS 257 Query: 244 YTGNLYLDEYFWIPKFQELRKVASGMSLHKKWRTTYFSTPSSLSHSAYPFWSGELFNKGR 303 Y GN Y DEYFW+PKF+EL KVASGM++HK+WR TYFSTPSS++H AY FWSG N+GR Sbjct: 258 YHGNFYFDEYFWVPKFRELNKVASGMAMHKRWRKTYFSTPSSVTHEAYAFWSGAHANRGR 317 Query: 304 RSKADRIEIDLSHTHLAKGALCGDGQWRQIVTVEDALTGGCNLFDLDQLQLEYSPSEYQN 363 + +RI+ID SH L +G LC D QWRQIVTV DA+ GGC+LFD+D+L+ EYS E+ N Sbjct: 318 -AAGERIQIDTSHEALVRGMLCEDAQWRQIVTVLDAMAGGCDLFDIDELRREYSAEEFAN 376 Query: 364 LLMCEFVDDEASVFPFAELQTCMIDSLEEWSD-FNPYLPRPFDYRPVWIGYDPSHTGDSA 422 LLMC+F+DD SVF ++LQ CM+DS EEW+D F+P L RPF YR VW+GYDP+ TGDSA Sbjct: 377 LLMCQFIDDSLSVFKLSDLQRCMVDSWEEWADDFSPLLLRPFGYREVWVGYDPALTGDSA 436 Query: 423 GCAVIAPPLVAGGKFRVLERHQWRGMDFAAQAKSIEDLTKKYTVEYIGVDATGIGQGVFQ 482 G V+APP V G FRVLERHQ+RG DF QA +IE +T++Y V YI +D TG+GQGV+Q Sbjct: 437 GLVVVAPPRVDDGAFRVLERHQFRGNDFEEQAAAIEAITQRYNVGYIAIDTTGMGQGVYQ 496 Query: 483 LVRQFYPAAREIRYSPEVKTAMVLKAKDTISSGRLEYDAGQTDITQSFMAIRKTMTASGN 542 LVR+F+PAA + YSPEVKT +VLK + + +GRL++DAG TD+ +FMAI++TMTASG Sbjct: 497 LVRKFFPAAVALNYSPEVKTRLVLKGQSVVRNGRLQFDAGWTDLAAAFMAIKQTMTASGR 556 Query: 543 RSTYEASRSEDASHADVAWAIMHALLNEPLTAASGGANPSILEFY 587 ++TY A R+++ HAD+AWA +HA+ EPL A G + S EFY Sbjct: 557 QATYTAGRTDETGHADLAWACLHAIDREPL-AGGGIHSSSFTEFY 600 >gi|11926|lcl|protein:vir:79177 Length: 589 # NCBI annotation: gp4, phage terminase, ATPase subunit # Family: family:all:169 # MgeID: mge:1866 # MgeName: phiE202 # Cross-refs: genbank:acc:YP_001111035;genbank:gi:134288784;genbank:Ge neID:4960696 Length = 589 Score = 729 bits (1882), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/585 (59%), Positives = 436/585 (74%), Gaps = 5/585 (0%) Query: 5 PTTTISDPRRQAALLYWQGYSVRQIAETLSIKTPTVQSWKLRDAWEDVAPISRVEASMEA 64 P +D R+ A LYWQG+ + IA L IK TV SW R+ W+D P+ R+EAS+E Sbjct: 7 PHQLENDVRKVARTLYWQGWRIASIARHLDIKPATVASWCRREKWKDATPVERIEASLEV 66 Query: 65 RLIQLILKEVKGNGDYKEIDALGRQIERLARVERYRSSGNEADLNPNVRNRNKGERQPVV 124 R++ LI KE K DYKEID LGRQ+ERLARV +Y +G E+DLNP + +RN G ++ Sbjct: 67 RMMVLIAKEKKDGADYKEIDLLGRQVERLARVRKYDETGKESDLNPKIASRNAGPKRRAP 126 Query: 125 KNVFSDEQAEKLTGLFMDNCFEYQLNWHKAGLDHRIRNILKSRQIGATFYFAREALIDAL 184 +N SDEQ +++ F D+ F+YQ W++ G D R RNILKSRQIGAT+YFAREAL+DAL Sbjct: 127 RNEISDEQHKRIIEAFRDSLFDYQKVWYRNG-DQRTRNILKSRQIGATWYFAREALVDAL 185 Query: 185 TTGRNQIFLSASKAQAHVFKNYIIDFARQV-DVDLKGDPIVLPNGARLIFLGTNVRTAQS 243 T RNQIFLSASKAQAHVFK YI FAR DV+L GDPI+LP+GA L FLGTN RTAQS Sbjct: 186 DTDRNQIFLSASKAQAHVFKQYITQFARDAADVELTGDPIILPSGATLYFLGTNARTAQS 245 Query: 244 YTGNLYLDEYFWIPKFQELRKVASGMSLHKKWRTTYFSTPSSLSHSAYPFWSGELFNKGR 303 Y GN Y DEYFW+PKF+EL KVASGM++HK+WR TYFSTPSS++H A+ FWSG N+GR Sbjct: 246 YHGNFYFDEYFWVPKFRELNKVASGMAMHKRWRKTYFSTPSSVTHEAFAFWSGAHANRGR 305 Query: 304 RSKADRIEIDLSHTHLAKGALCGDGQWRQIVTVEDALTGGCNLFDLDQLQLEYSPSEYQN 363 + +RI+ID SH L +G LC D QWRQIVTV DA+ GGCNLFD+D+L+ EYS E+ N Sbjct: 306 -AAGERIQIDTSHEALVRGMLCEDAQWRQIVTVLDAMAGGCNLFDIDELRREYSAEEFAN 364 Query: 364 LLMCEFVDDEASVFPFAELQTCMIDSLEEWSD-FNPYLPRPFDYRPVWIGYDPSHTGDSA 422 LLMC F+DD SVF ++LQ CM+DS EEW+D F+P L RPF +R VW+GYDP+ TGDSA Sbjct: 365 LLMCHFIDDSLSVFKLSDLQRCMVDSWEEWADDFSPLLLRPFGHREVWVGYDPALTGDSA 424 Query: 423 GCAVIAPPLVAGGKFRVLERHQWRGMDFAAQAKSIEDLTKKYTVEYIGVDATGIGQGVFQ 482 G V+APP V G FRVLERHQ+RG DF QA +IE +T++Y V YI +D TG+GQGV+Q Sbjct: 425 GLVVVAPPRVDDGAFRVLERHQFRGNDFEEQAAAIEAITQRYNVGYIAIDTTGMGQGVYQ 484 Query: 483 LVRQFYPAAREIRYSPEVKTAMVLKAKDTISSGRLEYDAGQTDITQSFMAIRKTMTASGN 542 LVR+F+PAA + YSPEVKT +VLK + + +GRL++DAG TD+ +FMAI++TMTASG Sbjct: 485 LVRKFFPAAVALNYSPEVKTRLVLKGQSVVRNGRLQFDAGWTDLAAAFMAIKQTMTASGR 544 Query: 543 RSTYEASRSEDASHADVAWAIMHALLNEPLTAASGGANPSILEFY 587 ++TY A R+E+ HAD+AWA +HA+ EPL A G + S EFY Sbjct: 545 QATYTAGRTEETGHADLAWACLHAIDREPL-AGGGIHSSSFTEFY 588 >gi|15673|lcl|protein:vir:1151 Length: 594 # NCBI annotation: predicted DNA-dependent ATPase terminase subunit # Family: family:all:169 # MgeID: mge:24 # MgeName: phi CTX # Cross-refs: genbank:acc:NP_490600;genbank:gi:17313220;genbank:GeneID :927317 Length = 594 Score = 715 bits (1846), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/589 (59%), Positives = 431/589 (73%), Gaps = 5/589 (0%) Query: 1 MNMTPTTTISDPRRQAALLYWQGYSVRQIAETLSIKTPTVQSWKLRDAWEDVAPISRVEA 60 MN I D RRQA LYW G+ V IA+ L K T+ SWK RD W+ + R+ Sbjct: 8 MNAAVEIPIRDNRRQAKFLYWMGWRVCDIADHLGEKDKTLHSWKDRDGWDRADSVERIGG 67 Query: 61 SMEARLIQLILKEVKGNGDYKEIDALGRQIERLARVERYRSSGNEADLNPNVRNRNKGER 120 ++EARL+QLILK+ K GDYKEID L RQ+ER AR++RY+ G E DLNP + RN+G + Sbjct: 68 ALEARLVQLILKDGKTGGDYKEIDLLHRQLERQARIQRYQGGGTETDLNPELAKRNEGPK 127 Query: 121 QPVVKNVFSDEQAEKLTGLFMDNCFEYQLNWHKAGLDHRIRNILKSRQIGATFYFAREAL 180 + +N S+E EKL F+D CF+YQ +W++AG + R R ILKSRQIGATFYFAREAL Sbjct: 128 RKPKRNDISEELTEKLVEAFLDGCFDYQKDWYRAG-NQRTRVILKSRQIGATFYFAREAL 186 Query: 181 IDALTTGRNQIFLSASKAQAHVFKNYIIDFARQ-VDVDLKGDPIVLPNGARLIFLGTNVR 239 IDAL TGRNQIFLSASKAQAH+FK YI FAR V V+LKGDPI+LPNGA L FLGTN R Sbjct: 187 IDALETGRNQIFLSASKAQAHIFKAYIQAFARDAVGVELKGDPIILPNGAELHFLGTNAR 246 Query: 240 TAQSYTGNLYLDEYFWIPKFQELRKVASGMSLHKKWRTTYFSTPSSLSHSAYPFWSGELF 299 TAQ Y GN Y DE+FW KF+EL KVASGM++ K++R TYFSTPSS++H AY FW+GE F Sbjct: 247 TAQGYHGNFYFDEFFWTFKFKELNKVASGMAMQKRYRRTYFSTPSSMAHEAYTFWTGERF 306 Query: 300 NKGRRSKADRIEIDLSHTHLAKGALCGDGQWRQIVTVEDALTGGCNLFDLDQLQLEYSPS 359 NKG+ + ADRI+ID+SH L +G LC D WRQIVT+ DA GC+LFD+D+L+LEY Sbjct: 307 NKGKPA-ADRIKIDVSHDALQQGRLCEDRIWRQIVTILDAEARGCDLFDIDELRLEYDAE 365 Query: 360 EYQNLLMCEFVDDEASVFPFAELQTCMIDSLEEWS-DFNPYLPRPFDYRPVWIGYDPSHT 418 +QNLLMC+FVDD AS+FP LQ CM+DS + WS D+ P+ RPF R VW+GYDP+ T Sbjct: 366 AFQNLLMCQFVDDGASIFPLTMLQPCMVDSWDLWSEDYKPFALRPFGDRQVWLGYDPAET 425 Query: 419 GDSAGCAVIAPPLVAGGKFRVLERHQWRGMDFAAQAKSIEDLTKKYTVEYIGVDATGIGQ 478 GD+AG V+APP V GGKFRVLERHQ+RG DFA QA+ I +T++Y V YIGVD TG+G Sbjct: 426 GDTAGLVVVAPPAVPGGKFRVLERHQFRGKDFAEQAEFIRKVTQRYWVTYIGVDTTGMGS 485 Query: 479 GVFQLVRQFYPAAREIRYSPEVKTAMVLKAKDTISSGRLEYDAGQTDITQSFMAIRKTMT 538 GV QLVRQF+P R YSPEVKT +V+KA I +GRLE+DAG TD+ Q+ MAIRKT+T Sbjct: 486 GVAQLVRQFFPGVRTFSYSPEVKTQLVMKAWSVIKNGRLEFDAGWTDLAQALMAIRKTIT 545 Query: 539 ASGNRSTYEASRSEDASHADVAWAIMHALLNEPLTAASGGANPSILEFY 587 A G + TY A R+++ HAD+AWA+ HAL NEPL + AN +E + Sbjct: 546 AGGRQFTYTAGRNDNTGHADLAWALFHALQNEPLEGQT-PANTGRMEIF 593 >gi|2172|lcl|protein:vir:100329 Length: 605 # NCBI annotation: terminase ATPase subunit # Family: family:all:169 # MgeID: mge:1484 # MgeName: phi-MhaA1-PHL101 # Cross-refs: genbank:acc:YP_655470;genbank:gi:109289938;genbank:GeneI D:4157372 Length = 605 Score = 667 bits (1721), Expect = 0.0, Method: Compositional matrix adjust. Identities = 313/565 (55%), Positives = 417/565 (73%), Gaps = 6/565 (1%) Query: 13 RRQAALLYWQGYSVRQIAETLSIKTPTVQSWKLRDAWEDVAPISRVEASMEARLIQLILK 72 +R+A YW GY+V +I+ L+I T+ SWK R+ W++++P+ RVEA++E+RL LI+K Sbjct: 26 KREAQSKYWAGYTVTEISRQLNIPVSTIASWKKREKWDEISPVGRVEATLESRLNLLIMK 85 Query: 73 EVKGNGDYKEIDALGRQIERLARVERYRSSG-NEADLNPNVRNRNKGERQPVVKNVFSDE 131 E K N DYKE+DAL R +E AR+++Y + G NEADLNPN++NRNKG+R+ +N S+E Sbjct: 86 ESKNNNDYKEMDALRRLLESTARIKKYSNGGGNEADLNPNIKNRNKGDRKKPEQNAISEE 145 Query: 132 QAEKLTGLFMDNCFEYQLNWHKAGLDHRIRNILKSRQIGATFYFAREALIDALTTGRNQI 191 QAE L F+D F YQ WH+AGL HRIRNILKSRQIGAT+YFA EAL+DAL TGRNQI Sbjct: 146 QAELLINGFLDGMFHYQKKWHEAGLTHRIRNILKSRQIGATYYFAHEALVDALVTGRNQI 205 Query: 192 FLSASKAQAHVFKNYIIDFARQV-DVDLKGDPIVLPNGARLIFLGTNVRTAQSYTGNLYL 250 F+SASK QA F+ YI+ +A++V DV+LKG+ I LPN ++LIFLGTN +TAQSY GNLY Sbjct: 206 FISASKKQALQFRAYIVAYAKRVADVELKGETITLPNESQLIFLGTNSKTAQSYHGNLYF 265 Query: 251 DEYFWIPKFQELRKVASGMSLHKKWRTTYFSTPSSLSHSAYPFWSGELFNKGRRSKADRI 310 DE FW+ +F+E+RKVA+GM+ K++R TYFSTPSS++HSAY WSG+LFN+ +R KA+++ Sbjct: 266 DEIFWVNRFEEIRKVAAGMASQKQYRITYFSTPSSITHSAYLLWSGKLFNR-KRPKAEQV 324 Query: 311 EIDLSHTHLAKGALCGDGQWRQIVTVEDALTGGCNLFDLDQLQLEYSPSEYQNLLMCEFV 370 EID+SH +L G CGDGQWRQIV + DA GGCNLFD++QL+LE SP E++ L MCEF+ Sbjct: 325 EIDISHANLKNGKKCGDGQWRQIVNIYDAEAGGCNLFDIEQLKLENSPDEFEQLFMCEFI 384 Query: 371 DDEASVFPFAELQTCMIDSLEEWSD--FNPYLPRPFDYRPVWIGYDPSHTGDSAGCAVIA 428 DD SVF F +Q C++DS+E W D F RPF + VW+GYDPS+TGD + VIA Sbjct: 385 DDNQSVFKFTMMQRCLVDSMEVWRDYVFTDGYQRPFGNKEVWVGYDPSYTGDRSALVVIA 444 Query: 429 PPLVAGGKFRVLERHQWRGMDFAAQAKSIEDLTKKYTVEYIGVDATGIGQGVFQLVRQFY 488 PP V GGKFR+LE ++G DFA QA I + KY V + +D TG+G GV+++V++ Sbjct: 445 PPKVDGGKFRLLEYRTFKGADFAEQAAEIVAICAKYNVTRLAIDTTGLGVGVYEIVKKER 504 Query: 489 PAAREIRYSPEVKTAMVLKAKDTISSGRLEYDAGQ-TDITQSFMAIRKTMTASGNRSTYE 547 P A + Y+ E+K+ MVLK D IS GR E+D+ ++ SFMAI+K +T SG + TY Sbjct: 505 PDAVALTYNVELKSKMVLKGLDIISKGRFEFDSMHAVEVGASFMAIKKQITNSGRQVTYV 564 Query: 548 ASRSEDASHADVAWAIMHALLNEPL 572 A RSE+ASHAD+AWA + +NEP Sbjct: 565 ADRSEEASHADLAWACLQVFINEPF 589 >gi|10658|lcl|protein:vir:268 Length: 605 # NCBI annotation: putative terminase, ATPase subunit # Family: family:all:169 # MgeID: mge:7 # MgeName: K139 # Cross-refs: genbank:acc:NP_536648;genbank:gi:17975126;genbank:GeneID :929082 Length = 605 Score = 463 bits (1192), Expect = e-132, Method: Compositional matrix adjust. Identities = 257/595 (43%), Positives = 355/595 (59%), Gaps = 46/595 (7%) Query: 13 RRQAALLYWQGYSVRQIAETLSIKTP-TVQSWKLRDAWEDVAPISRVEASMEARLIQLIL 71 R+ A LY + ++ R+IA+ L++ + + W + W D+ ++ ++ R+ L+ Sbjct: 8 RQAARALYLKAWTPREIADELNLNSDRIIYYWADKFGWRDMLREQTIDEAIANRIQTLLE 67 Query: 72 KEVKGNGDYKEIDALGRQIERLARVERYRSSGNEADLNPN----------VRNRNKGE-- 119 E N ++D L R I ++++ R++ E PN N G Sbjct: 68 VE---NPSKPQLDMLDRLINHHVKLKKLRAT--EQPTQPNEAGTVSAQSGAHNSKSGSPK 122 Query: 120 ------------------RQPVVKNVFSDEQAEKLTGLFMDNCFEYQLNWHKAGLDHRIR 161 ++ VKN S E E L+ D+ F YQ + L R R Sbjct: 123 AESGTQTGDSGKQSAPSGKRKKVKNDVS-EITEADFKLWHDSLFAYQHT-MRNNLHQRTR 180 Query: 162 NILKSRQIGATFYFAREALIDALTTGRNQIFLSASKAQAHVFKNYIIDFARQ-VDVDLKG 220 NILKSRQIGAT+YFA EAL A+ TG NQIFLSAS+AQA VF+ YI+ A++ + +++ G Sbjct: 181 NILKSRQIGATYYFAGEALEQAILTGDNQIFLSASRAQADVFRRYIVAIAKEFLGIEITG 240 Query: 221 DPIVLPNGARLIFLGTNVRTAQSYTGNLYLDEYFWIPKFQELRKVASGMSLHKKWRTTYF 280 +P L NGA L +L TN +TAQSY G++Y+DEYFWI KF EL KVAS M+ HKKWR TYF Sbjct: 241 NPSTLSNGAELHYLSTNGKTAQSYHGHVYIDEYFWIGKFDELNKVASAMATHKKWRKTYF 300 Query: 281 STPSSLSHSAYPFWSGELFNKGRRSKADRIEIDLSHTHLAKGALCGDGQWRQIVTVEDAL 340 STPSS H AY FW+GE + +G ++ IE G LC D QWR +VT+EDA Sbjct: 301 STPSSKMHPAYSFWTGEKW-RGDKTTRKNIEFPTFDELRDGGRLCPDKQWRYVVTIEDAA 359 Query: 341 TGGCNLFDLDQLQLEYSPSEYQNLLMCEFVDDEASVFPFAELQTCMIDSLEEWSDFNPYL 400 GGC+LFD+++L+ EYS +++ NL MC FVD +S+F F +++ CM+DS + W D+ P Sbjct: 360 KGGCDLFDIEELREEYSETDFNNLFMCVFVDGASSIFEFNKIERCMVDS-DIWQDYKPNA 418 Query: 401 PRPFDYRPVWIGYDPSHTGDSAGCAVIAPPLVAGGKFRVLERHQWRGMDFAAQAKSIEDL 460 RPF R VW+GYDPS T D+A V+APP+VA KFRVLE+H WRG+ F QA I + Sbjct: 419 ARPFGSREVWLGYDPSRTRDNAVLMVVAPPIVAVEKFRVLEKHTWRGLSFQHQASEISKV 478 Query: 461 TKKYTVEYIGVDATGIGQGVFQLVRQFYPAARE---IRYSPEVKTAMVLKAKDTISSGRL 517 +++ V Y+G+D TGIG GV L+ +P RE I YS E K +V+K D I RL Sbjct: 479 FERFNVTYLGIDITGIGAGVHDLLVNKHP--RETVAIHYSNENKNRLVMKMIDIIDGNRL 536 Query: 518 EYDAGQTDITQSFMAIRKTMTASGNRSTYEASRSEDASHADVAWAIMHALLNEPL 572 ++DAG + +FMAI++ T SGN T++A RSE A HAD WA+ HAL+NEPL Sbjct: 537 QFDAGMKETAMAFMAIKRVATNSGNMMTFKAERSEQAGHADDFWALSHALINEPL 591 >gi|16385|lcl|protein:vir:3744 Length: 607 # NCBI annotation: orf15 # Family: family:all:169 # MgeID: mge:79 # MgeName: HP1 # Cross-refs: genbank:acc:NP_043485;genbank:gi:9628620;genbank:GeneID: 1261142 Length = 607 Score = 437 bits (1125), Expect = e-124, Method: Compositional matrix adjust. Identities = 243/575 (42%), Positives = 351/575 (61%), Gaps = 21/575 (3%) Query: 16 AALLYWQGYSVRQIAETLSIKTPT-VQSWKLRDAWEDVAPISRVEASMEARLIQLILKEV 74 A LY + Y+ ++IAE L + + + W + W ++ S +E + R+I L +E Sbjct: 22 AKFLYLKKYTPKEIAEELGLNSRRPIYYWAEKYNWRNLLSESGIEELIALRIITLTEREN 81 Query: 75 KGNGDYKEIDAL-----GRQIERLARVERY--RSSGNEADLNPNVR------NRNKGERQ 121 K + + KE++AL + +R A V + +S+ N AD++ N R + ++ +++ Sbjct: 82 KSDQEIKELEALIDKDIQYKKQRAATVAKVTAKSAVNSADVSGNERAFADSGDGDERKKK 141 Query: 122 PVVKNVFSDEQAEKLTGLFMDNCFEYQLNWHKAGLDHRIRNILKSRQIGATFYFAREALI 181 VKN S E + F+D+ F+YQ + ++ H +RNILKSRQIGAT+YF+ EAL Sbjct: 142 KRVKNDISHVTPE-MCQPFIDSLFDYQKHI-RSNKHHDVRNILKSRQIGATYYFSFEALE 199 Query: 182 DALTTGRNQIFLSASKAQAHVFKNYIIDFARQ-VDVDLKGDPIVLPNGARLIFLGTNVRT 240 DA+ +G NQIFLSASK QA +FKNYI+ AR+ V+L G+PI+L NGA L FL TN T Sbjct: 200 DAIFSGDNQIFLSASKRQAEIFKNYIVKMAREYFGVELTGNPIILSNGAELHFLSTNKNT 259 Query: 241 AQSYTGNLYLDEYFWIPKFQELRKVASGMSLHKKWRTTYFSTPSSLSHSAYPFWSGELFN 300 +Q +G++Y DEY WI FQ VAS M+ H+KWR TYFSTPSS H +Y FWSG+ + Sbjct: 260 SQGNSGHVYGDEYAWIRDFQRFDDVASAMATHEKWRETYFSTPSSKFHESYSFWSGDNWR 319 Query: 301 KGRRSKADRIEIDLSHTHLAKGALCGDGQWRQIVTVEDALTGGCN-LFDLDQLQLEYSPS 359 G K + G LC DGQWR +VT+EDAL GG + LF++++L+ YS Sbjct: 320 DGD-PKRKNVPFPTFAELRDGGRLCPDGQWRYVVTIEDALKGGADKLFNIEKLKQRYSKY 378 Query: 360 EYQNLLMCEFVDDEASVFPFAELQTCMIDSLEEWSDFNPYLPRPFDYRPVWIGYDPSHTG 419 + L MC ++DD S+F +L C +D + +W DFNP RPF R VW G+DP+H+G Sbjct: 379 AFNQLYMCIWIDDADSIFNVKQLLKCGVD-IAKWKDFNPKADRPFGDREVWGGFDPAHSG 437 Query: 420 DSAGCAVIAPPLVAGGKFRVLERHQWRGMDFAAQAKSIEDLTKKYTVEYIGVDATGIGQG 479 D A +IAPP + G K+R+L R+QW G+ + QA I L +KY + YIG+DATG+G G Sbjct: 438 DGASFVIIAPPALPGEKYRMLARYQWHGLSYVYQANQIRALYEKYNMTYIGIDATGVGYG 497 Query: 480 VFQLVRQF-YPAAREIRYSPEVKTAMVLKAKDTISSGRLEYDAGQTDITQSFMAIRKTMT 538 V++LV++F AA I Y+PE KT MVLK D + G++E+ + DI SF+ I+ T Sbjct: 498 VYELVKEFARRAATAIIYNPESKTGMVLKVHDLVEHGQIEWSESELDIVPSFLMIKHQST 557 Query: 539 ASGNRSTYEASRSEDASHADVAWAIMHALLNEPLT 573 SGN T+ A R+ HADV +AI +A+ + L+ Sbjct: 558 KSGNTMTFTAERTVKTQHADVFFAICNAINKKSLS 592 >gi|19904|lcl|protein:vir:3781 Length: 607 # NCBI annotation: terminase # Family: family:all:169 # MgeID: mge:328 # MgeName: HP2 # Cross-refs: genbank:acc:NP_536821;genbank:gi:17981830;genbank:GeneID :929209 Length = 607 Score = 437 bits (1125), Expect = e-124, Method: Compositional matrix adjust. Identities = 244/575 (42%), Positives = 348/575 (60%), Gaps = 21/575 (3%) Query: 16 AALLYWQGYSVRQIAETLSIK-TPTVQSWKLRDAWEDVAPISRVEASMEARLIQLILKEV 74 A LY + Y+ ++IAE L + T + W + W ++ S +E + R+I L +E Sbjct: 22 AKFLYLKKYTPKEIAEELGLNSTRPIYYWAEKYNWRNLISESGIEELIALRIITLTEREN 81 Query: 75 KGNGDYKEIDAL-----GRQIERLARVERY--RSSGNEADLNPNVR------NRNKGERQ 121 K + + KE++AL + +R A V + +S+ N AD++ + R + ++ +++ Sbjct: 82 KSDQEIKELEALIDKDIQYKKQRAATVAKVTAKSAVNSADVSSSDRSFADSGDGDEHKKK 141 Query: 122 PVVKNVFSDEQAEKLTGLFMDNCFEYQLNWHKAGLDHRIRNILKSRQIGATFYFAREALI 181 VKN S E + F+D+ F+YQ + +A H +RNILKSRQIGAT+YF+ EAL Sbjct: 142 KRVKNDISHVSPE-MCQPFIDSLFDYQKHI-RANKHHDVRNILKSRQIGATYYFSFEALE 199 Query: 182 DALTTGRNQIFLSASKAQAHVFKNYIIDFARQ-VDVDLKGDPIVLPNGARLIFLGTNVRT 240 DA+ +G NQIFLSASK QA +FKNYI+ AR+ V+L G+PI+L NGA L FL TN T Sbjct: 200 DAIFSGDNQIFLSASKRQAEIFKNYIVKMAREYFGVELTGNPIILSNGAELHFLSTNKNT 259 Query: 241 AQSYTGNLYLDEYFWIPKFQELRKVASGMSLHKKWRTTYFSTPSSLSHSAYPFWSGELFN 300 +Q +G++Y DEY WI FQ VAS M+ H KWR TYFSTPSS H +Y FWSG+ + Sbjct: 260 SQGNSGHVYGDEYAWIRDFQRFNDVASAMATHAKWRETYFSTPSSKFHESYSFWSGDNWR 319 Query: 301 KGRRSKADRIEIDLSHTHLAKGALCGDGQWRQIVTVEDALTGGC-NLFDLDQLQLEYSPS 359 G K + G LC DGQWR +VT+EDAL GG LF++++L+ YS Sbjct: 320 DGD-PKRKNVPFPTFAELRDGGRLCPDGQWRYVVTIEDALKGGAGTLFNIEKLKQRYSKY 378 Query: 360 EYQNLLMCEFVDDEASVFPFAELQTCMIDSLEEWSDFNPYLPRPFDYRPVWIGYDPSHTG 419 + L MC ++DD S+F +L C +D + +W DFNP RPF R VW G+DP+H+G Sbjct: 379 AFNQLYMCVWIDDADSIFTVHQLLKCGVD-ISKWKDFNPKADRPFGDREVWGGFDPAHSG 437 Query: 420 DSAGCAVIAPPLVAGGKFRVLERHQWRGMDFAAQAKSIEDLTKKYTVEYIGVDATGIGQG 479 D A +IAPP + K+RVL R+QW G+ + QA I L +KY + YIG+DATG+G G Sbjct: 438 DGASFVIIAPPALPSEKYRVLARYQWNGLSYVYQANQIRALYEKYNMTYIGIDATGVGYG 497 Query: 480 VFQLVRQF-YPAAREIRYSPEVKTAMVLKAKDTISSGRLEYDAGQTDITQSFMAIRKTMT 538 V++LV++F AA I Y+PE KT MVLK D + G++E+ + DI SF+ I+ T Sbjct: 498 VYELVKEFARRAATAIIYNPESKTGMVLKVHDLVEHGQIEWSESELDIVPSFLMIKHQST 557 Query: 539 ASGNRSTYEASRSEDASHADVAWAIMHALLNEPLT 573 SGN T+ A R+ HADV +AI +A+ + L+ Sbjct: 558 KSGNTMTFTAERTVKTQHADVFFAICNAINKKSLS 592 >gi|2683|lcl|protein:vir:98854 Length: 603 # NCBI annotation: hypothetical protein # Family: family:all:169 # MgeID: mge:1495 # MgeName: F108 # Cross-refs: genbank:acc:YP_654730;genbank:gi:109302915;genbank:GeneI D:4156059 Length = 603 Score = 427 bits (1099), Expect = e-121, Method: Compositional matrix adjust. Identities = 243/577 (42%), Positives = 346/577 (59%), Gaps = 25/577 (4%) Query: 16 AALLYWQGYSVRQIAETLSIKTP-TVQSWKLRDAWEDVAPISRVEASMEARLIQLILKEV 74 A LY + ++ +IA+ LS+ + + W + W ++ + +E + R+I L +E Sbjct: 21 AKFLYLKKWTPNEIAKELSLNSARPIYYWAEKYNWRNLINENGIEELIALRIITLTEREN 80 Query: 75 KGNGDYKEIDAL-GRQIE-RLARVERYRSS-----------GNEADLNPNVRNRNKGERQ 121 K + + KE++AL + IE + R ++ +S+ G+ AD NK + + Sbjct: 81 KTDQEIKELEALIDKDIEYKKQRAKKAQSAQKSAVTLSESFGDFADSGHGNDGDNKKKSK 140 Query: 122 PVVKNVFSDEQAEKLTGLFMDNCFEYQLNWHKAGLDHRIRNILKSRQIGATFYFAREALI 181 KN S E + F+D+ F+YQ + +A H +RNILKSRQIGAT+YFA EAL Sbjct: 141 KRAKNDISHVTPE-MVQPFIDSLFDYQKHC-RANKHHSVRNILKSRQIGATYYFAFEALE 198 Query: 182 DALTTGRNQIFLSASKAQAHVFKNYIIDFARQ-VDVDLKGDPIVLPNGARLIFLGTNVRT 240 DA+ TG NQIFLSASK QA +FK YII AR DV+LKG PI+L NGA L FL TN T Sbjct: 199 DAIFTGDNQIFLSASKRQAEIFKTYIIKMARAYFDVELKGSPIILSNGAELHFLATNANT 258 Query: 241 AQSYTGNLYLDEYFWIPKFQELRKVASGMSLHKKWRTTYFSTPSSLSHSAYPFWSGELFN 300 +Q +G++Y DEY WI F+ V+S M+ HK WR TYFSTPSS H +Y FWSG+++ Sbjct: 259 SQGNSGHVYGDEYAWIRDFERFNTVSSAMATHKHWRETYFSTPSSKFHPSYAFWSGDMWK 318 Query: 301 KGRRSKADRIEIDLSHTHLAKGALCGDGQWRQIVTVEDALTGGCN-LFDLDQLQLEYSPS 359 +G +A+ + G C DG WR ++T+EDAL GG LFD+D L+ +YS Sbjct: 319 EGDPKRANVVFPSFEELRDG-GRFCPDGTWRYVITIEDALKGGAGVLFDIDALKQKYSKY 377 Query: 360 EYQNLLMCEFVDDEASVFPFAELQTCMIDSLEEWSDFNPYLPRPFDYRPVWIGYDPSHTG 419 + L MC +VDD S+F +L C +D + +W D NP RPF R VW GYDP+H+G Sbjct: 378 AFAQLFMCVWVDDADSIFNIKKLLKCGVD-IAKWKDHNPNDARPFGAREVWGGYDPAHSG 436 Query: 420 DSAGCAVIAPPLVAGGKFRVLERHQWRGMDFAAQAKSIEDLTKKYTVEYIGVDATGIGQG 479 D A ++APP + K+RVL R+QW G+ + QA I+ L +KY + YIG+DATG+G G Sbjct: 437 DGASFVIVAPPALLKEKYRVLARYQWNGLSYKYQAAQIKQLFEKYNMTYIGIDATGVGYG 496 Query: 480 VFQLVRQFYPAARE---IRYSPEVKTAMVLKAKDTISSGRLEYDAGQTDITQSFMAIRKT 536 V++ V++F A R+ + Y+PE KT MVLK D + ++E+D + DI SF+ I+ T Sbjct: 497 VYEQVKEF--AGRKAVPLVYNPESKTEMVLKVHDLVEHEQIEWDENERDIVPSFLMIKHT 554 Query: 537 MTASGNRSTYEASRSEDASHADVAWAIMHALLNEPLT 573 T SGN T+ A R+ HADV +AI +A+ N+ LT Sbjct: 555 STKSGNTMTFVAERTVKTQHADVFFAIANAINNKSLT 591 >gi|11523|lcl|protein:vir:78781 Length: 604 # NCBI annotation: putative terminase large subunit # Family: family:all:169 # MgeID: mge:1857 # MgeName: phiO18P # Cross-refs: genbank:acc:YP_001285645;genbank:gi:148727151;genbank:Ge neID:5220131 Length = 604 Score = 424 bits (1090), Expect = e-120, Method: Compositional matrix adjust. Identities = 241/583 (41%), Positives = 342/583 (58%), Gaps = 28/583 (4%) Query: 13 RRQAALLYWQGYSVRQIAETLSIKTP-TVQSWKLRDAWEDVAPISRVEASMEARLIQLIL 71 R A LY + ++ ++I + L + + + W + W D+ VE ++ R+ L+ Sbjct: 8 RNAAKGLYLKRWTPQEIKDELGLNSCRIIYYWAEKLGWRDLLTEEAVEDAINRRVQVLLH 67 Query: 72 KEVKGNGDYKEIDAL-GRQI----------ERLARVERYRSSGNEADLNPNVRNRNKGER 120 +E K G+ +E+D L G + ER ++ R+ G+E + R N Sbjct: 68 REKKTPGEQEELDRLIGHHVSLKEKALKWAEREQALKAQRAEGSEPGPSRGKREHNSQGG 127 Query: 121 QPVVKNVFSDEQAEKLTG----LFMDNCFEYQLNWHKAGLDH---RIRNILKSRQIGATF 173 + + LT ++ F YQL +A D R RNILKSRQIG T+ Sbjct: 128 GGRKGGKKAKNEIGHLTADDFTEWLGTLFGYQLRVREAKNDPALPRTRNILKSRQIGMTY 187 Query: 174 YFAREALIDALTTGRNQIFLSASKAQAHVFKNYIIDFARQ-VDVDLKGDPIVLPNGARLI 232 YFA EAL DA+ TG NQIFLSA++AQA VF++YI A+ + V L G+PIVL NGA L Sbjct: 188 YFAGEALEDAILTGGNQIFLSATRAQAEVFRSYICKIAQTFLGVTLTGNPIVLSNGAELH 247 Query: 233 FLGTNVRTAQSYTGNLYLDEYFWIPKFQELRKVASGMSLHKKWRTTYFSTPSSLSHSAYP 292 F TN +AQS +GN+Y+DEYFWIP F++L VAS M+ WR TYFSTPSS H AY Sbjct: 248 FCSTNSNSAQSRSGNVYIDEYFWIPNFEKLSDVASAMATQSHWRKTYFSTPSSKVHEAYR 307 Query: 293 FWSGELFNKGRRSKADRIEIDLSHTHLAK--GALCGDGQWRQIVTVEDALTGGCNLFDLD 350 FW+G+ + KG+R R+ ID + G +C D QWR ++T+EDA+ GC+L D++ Sbjct: 308 FWTGDRW-KGQRPS--RVAIDFPGEDDLRDGGRICPDRQWRYVITIEDAIRLGCHLIDIE 364 Query: 351 QLQLEYSPSEYQNLLMCEFVDDEASVFPFAELQTCMIDSLEEWSDFNPYLPRPFDYRPVW 410 +L+ EY + L MC F+DD SVF F +++ +D W D+ P P PF R VW Sbjct: 365 ELKDEYPEEVFDRLYMCRFIDDALSVFKFQDMERAGVDPTR-WEDYKPGRPDPFGRREVW 423 Query: 411 IGYDPSHTGDSAGCAVIAPPLVAGGKFRVLERHQWRGMDFAAQAKSIEDLTKKYTVEYIG 470 +GYDPS T D+A V+APP VAG +FRVLE+H WRG++F QA+ IE + KK+ V Y+G Sbjct: 424 MGYDPSRTRDNATLVVVAPPTVAGERFRVLEKHYWRGLNFQYQAQEIERIAKKFRVTYLG 483 Query: 471 VDATGIGQGVFQLVRQ-FYPAAREIRYSPEVKTAMVLKAKDTISSGRLEYDAGQTDITQS 529 VD +GIG GV+ L++ F I YS E K+ +VLK D + + R+E+D+ DI + Sbjct: 484 VDVSGIGAGVYDLLKPVFKGVCHPINYSIESKSRLVLKMIDVVEANRIEWDSSDRDIPLA 543 Query: 530 FMAIRKTMTASGNRSTYEASRSEDASHADVAWAIMHALLNEPL 572 F+AI+++ T G + T+ A+R HADV +AI HA+ NEPL Sbjct: 544 FLAIKRSTTGGG-QMTFRAARDNVTGHADVFFAIAHAVANEPL 585 >gi|13742|lcl|protein:vir:1826 Length: 248 # NCBI annotation: W protein # Family: family:all:169 # MgeID: mge:324 # MgeName: 186 # Cross-refs: genbank:acc:NP_052250;genbank:gi:9634057;genbank:GeneID: 1262463 Length = 248 Score = 150 bits (378), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 88/247 (35%), Positives = 136/247 (55%), Gaps = 14/247 (5%) Query: 125 KNVFSDEQAEKLTGLFMDNCFEYQLNWHKAGLDHRIRNILKSRQIGATFYFAREALIDAL 184 NVFS Q + + + ++ F+YQ W + G + R+I KSRQIGAT F+REAL+DAL Sbjct: 3 NNVFSQSQIQAMADILHNDSFDYQATWLRVGKLNIDRSITKSRQIGATQLFSREALLDAL 62 Query: 185 TTGRNQIFLSASKAQAHVFKNYIIDFARQVDVDL--KGDPIVLPNGARLIFLGTNVRTAQ 242 TTG N ++ + + A V Y+ + + +V V L G + L +GA + F+G A Sbjct: 63 TTGDNHVWFAHTIEHARVALMYMSNLSARVGVSLTSNGHSLQLDDGAVISFVGEESHCA- 121 Query: 243 SYTGNLYLDEYFWIPKFQELRKVASGMSLHKKWRTTYFSTPSSLSHSAYPFWSGELFNKG 302 + GN+YLDE+ W KVA+G++ HK+ T F++PS ++ A+ W+G Sbjct: 122 ALAGNVYLDEFGWFNNPLRAAKVAAGIACHKRHSLTMFTSPSD-NYDAFRVWNGTT---- 176 Query: 303 RRSKADRIEIDLSHTHLAKGALCGDGQWRQIVTVEDALTGGCNLFDLDQLQLEYSPSEYQ 362 RR + + + C DG WRQ VT++ A GCNLF D+++ EYS +Y+ Sbjct: 177 RRHRPSPL------INTGDSVFCTDGVWRQSVTLDAACQRGCNLFAPDEIKHEYSDDDYR 230 Query: 363 NLLMCEF 369 L C++ Sbjct: 231 LLFGCDW 237 >gi|10609|lcl|protein:vir:106508 Length: 492 # NCBI annotation: Pas60 # Family: family:all:144 # MgeID: mge:1680 # MgeName: phiAsp2 # Cross-refs: genbank:acc:YP_024846;genbank:gi:48697461;genbank:GeneID :2846165 Length = 492 Score = 40.0 bits (92), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 42/172 (24%), Positives = 67/172 (38%), Gaps = 42/172 (24%) Query: 330 WRQIVTVEDALTGGC---NLFDLDQLQLEYSPSEYQNLLMCEF-VDDEASVFPFAELQTC 385 W + VT+E+A+ G D + Q + + N ++ EF DE SV P A L+ Sbjct: 220 WTRHVTLEEAIASGRISRAWADQRRSQWGSDSAVFHNRVLGEFHASDEDSVIPLAWLEAA 279 Query: 386 MIDSLEEWSDFNPYLPRPFDYRPVWIGYDPSHTGDSAGCAVIAPPLVAGGKFRVLERHQW 445 +E W +++ RP P+W G D GD A R W Sbjct: 280 ----IERWHEWD-RQGRPSPGGPLWTGVDVGRGGDETVLAA---------------RDGW 319 Query: 446 RGMDFAAQAKSIEDLTKKYTVEYIG----------VDATGIGQGVFQLVRQF 487 A ++E ++ T+ +G +D G+G GVF +R+ Sbjct: 320 --------AVTLETNRRRDTMATVGLIQAREGRAIIDVIGLGAGVFDRLREL 363 >gi|17903|lcl|protein:vir:1080 Length: 604 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:21 # MgeName: bIL309 # Cross-refs: genbank:acc:NP_076734;genbank:gi:13095844;genbank:GeneID :920385 Length = 604 Score = 39.7 bits (91), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 17/92 (18%) Query: 397 NPYLP---------RPFDY--RPVWIGYDPSHTGDSAGCAVIAPPLVAGGKFRVLERHQW 445 N YLP FDY R V+IG+D S T D A + P +G KF L +H W Sbjct: 352 NAYLPLDLVQDAIVDEFDYFGRDVFIGFDYSQTNDDTSLAFVFPH--SGSKFH-LYQHSW 408 Query: 446 RGMDFAAQAKSIEDLTKKYTVEYIGVDATGIG 477 + A+A SIE ++ ++Y V G Sbjct: 409 IPI---AKAGSIEAKEQRDNIDYRAVQEKGFA 437 >gi|1545|lcl|protein:vir:100880 Length: 630 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1473 # MgeName: Lc-Nu # Cross-refs: genbank:acc:YP_358760;genbank:gi:78000026;genbank:GeneID :3726151 Length = 630 Score = 34.3 bits (77), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 9/80 (11%) Query: 407 RPVWIGYDPSHTGDSAGCAVIAPPLVAGGKFRVLERHQWRGMDFAAQAKSIEDLTKKYTV 466 R V+IG+D S T D+ I P +++H + AQAK+IE +K+ + Sbjct: 396 RDVFIGFDGSQTNDNTSFGFIYPYTDHDKHMFHVQQHSFIPF---AQAKTIEAKSKQDGL 452 Query: 467 EYIG------VDATGIGQGV 480 +Y+ VD T + GV Sbjct: 453 DYLKLQDEGFVDITNLASGV 472 >gi|3997|lcl|protein:vir:100199 Length: 629 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1524 # MgeName: phi AT3 # Cross-refs: genbank:acc:YP_025027;genbank:gi:48697260;genbank:GeneID :2948297 Length = 629 Score = 34.3 bits (77), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 9/80 (11%) Query: 407 RPVWIGYDPSHTGDSAGCAVIAPPLVAGGKFRVLERHQWRGMDFAAQAKSIEDLTKKYTV 466 R V+IG+D S T D+ I P +++H + AQAK+IE +K+ + Sbjct: 395 RDVFIGFDGSQTNDNTSFGFIYPYTDHDKHMFHVQQHSFIPF---AQAKTIEAKSKQDGL 451 Query: 467 EYIG------VDATGIGQGV 480 +Y+ VD T + GV Sbjct: 452 DYLKLQDEGFVDITNLASGV 471 >gi|17412|lcl|protein:vir:2682 Length: 563 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:57 # MgeName: phiSLT # Cross-refs: genbank:acc:NP_075501;genbank:gi:12719430;genbank:GeneID :920187 Length = 563 Score = 33.5 bits (75), Expect = 0.008, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 49/110 (44%), Gaps = 26/110 (23%) Query: 347 FDLDQLQLEY-----SPSEYQNLLMCEFV----DDEASVFPFAELQ-TCMIDSLEEWSDF 396 DLD+++ E+ +P+E + + F +DE S + LQ I SL+E Sbjct: 297 IDLDEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFIDYPTLQKNNEIISLDE---- 352 Query: 397 NPYLPRPFDYRPVWIGYDPSHTGD-SAGCAVIAPPLVAGGKFRVLERHQW 445 + RP IGYD S T D +A CA A + GK VL H W Sbjct: 353 -------LEGRPCTIGYDLSETEDFTAACATFA---LDNGKVAVL-THSW 391 >gi|11420|lcl|protein:vir:78630 Length: 563 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1855 # MgeName: tp310-2 # Cross-refs: genbank:acc:YP_001429940;genbank:gi:156603994;genbank:Ge neID:5525376 Length = 563 Score = 33.1 bits (74), Expect = 0.008, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 49/110 (44%), Gaps = 26/110 (23%) Query: 347 FDLDQLQLEY-----SPSEYQNLLMCEFV----DDEASVFPFAELQ-TCMIDSLEEWSDF 396 +LD+++ E+ +P+E + + F +DE S + LQ I SLEE Sbjct: 297 INLDEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFIDYPTLQKNNEIVSLEE---- 352 Query: 397 NPYLPRPFDYRPVWIGYDPSHTGD-SAGCAVIAPPLVAGGKFRVLERHQW 445 + RP IGYD S T D +A CA A + GK VL H W Sbjct: 353 -------LEGRPCTIGYDLSETEDFTAACATFA---LDNGKVAVLS-HSW 391 >gi|3108|lcl|protein:vir:94427 Length: 563 # NCBI annotation: ORF005 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1506 # MgeName: 47 # Cross-refs: genbank:acc:YP_240002;genbank:gi:66395661;genbank:GeneID :5133087 Length = 563 Score = 33.1 bits (74), Expect = 0.008, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 49/110 (44%), Gaps = 26/110 (23%) Query: 347 FDLDQLQLEY-----SPSEYQNLLMCEFV----DDEASVFPFAELQ-TCMIDSLEEWSDF 396 +LD+++ E+ +P+E + + F +DE S + LQ I SLEE Sbjct: 297 INLDEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFIDYPTLQKNNEIVSLEE---- 352 Query: 397 NPYLPRPFDYRPVWIGYDPSHTGD-SAGCAVIAPPLVAGGKFRVLERHQW 445 + RP IGYD S T D +A CA A + GK VL H W Sbjct: 353 -------LEGRPCTIGYDLSETEDFTAACATFA---LDNGKVAVLS-HSW 391 >gi|2221|lcl|protein:vir:93883 Length: 563 # NCBI annotation: ORF005 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1485 # MgeName: 3A # Cross-refs: genbank:acc:YP_239935;genbank:gi:66395593;genbank:GeneID :5130949 Length = 563 Score = 33.1 bits (74), Expect = 0.008, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 49/110 (44%), Gaps = 26/110 (23%) Query: 347 FDLDQLQLEY-----SPSEYQNLLMCEFV----DDEASVFPFAELQ-TCMIDSLEEWSDF 396 +LD+++ E+ +P+E + + F +DE S + LQ I SLEE Sbjct: 297 INLDEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFIDYPTLQKNNEIVSLEE---- 352 Query: 397 NPYLPRPFDYRPVWIGYDPSHTGD-SAGCAVIAPPLVAGGKFRVLERHQW 445 + RP IGYD S T D +A CA A + GK VL H W Sbjct: 353 -------LEGRPCTIGYDLSETEDFTAACATFA---LDNGKVAVLS-HSW 391 >gi|8807|lcl|protein:vir:96981 Length: 563 # NCBI annotation: ORF003 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1643 # MgeName: 42e # Cross-refs: genbank:acc:YP_239856;genbank:gi:66395511;genbank:GeneID :5133014 Length = 563 Score = 32.7 bits (73), Expect = 0.012, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 48/110 (43%), Gaps = 26/110 (23%) Query: 347 FDLDQLQLEY-----SPSEYQNLLMCEFV----DDEASVFPFAELQTCM-IDSLEEWSDF 396 DLD+++ E+ +P E + + F +DE S + LQ I SL+E Sbjct: 297 IDLDEMKEEWEKAKRTPDERGDFITKRFNIFANNDEMSFIDYPTLQKNNDIISLDE---- 352 Query: 397 NPYLPRPFDYRPVWIGYDPSHTGD-SAGCAVIAPPLVAGGKFRVLERHQW 445 + RP IGYD S T D +A CA A + GK VL H W Sbjct: 353 -------LEGRPCTIGYDLSETEDFTAACATFA---LDNGKVAVL-THSW 391 >gi|14327|lcl|protein:vir:9358 Length: 453 # NCBI annotation: terminase-large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:166 # MgeName: phi 12 # Cross-refs: genbank:acc:NP_803336;genbank:gi:29028647;genbank:GeneID :1258090 Length = 453 Score = 30.4 bits (67), Expect = 0.061, Method: Compositional matrix adjust. Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 5/40 (12%) Query: 407 RPVWIGYDPSHTGD-SAGCAVIAPPLVAGGKFRVLERHQW 445 RP IGYD S T D +A CA A + GK VL H W Sbjct: 246 RPCTIGYDLSETEDFTAACATFA---LDNGKVAVL-THSW 281 >gi|26461|lcl|protein:vir:573 Length: 589 # NCBI annotation: unknown # Family: family:all:4926 # MgeID: mge:13 # MgeName: SPBc2 # Cross-refs: genbank:acc:NP_046608;genbank:gi:9630181;genbank:GeneID: 1261423 Length = 589 Score = 29.6 bits (65), Expect = 0.099, Method: Compositional matrix adjust. Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%) Query: 451 AAQAKSIEDLTKKYTVEYIGVDATGIGQGVFQ-LVRQFYPAAREIRYSP 498 QA I + + Y +YI +D IG GV+ L + Y R Y P Sbjct: 391 GTQATRIRQIYEDYDCDYIVLDTQSIGLGVYDALCQPLYDKERAKEYEP 439 >gi|830|lcl|protein:vir:93598 Length: 553 # NCBI annotation: putative large subunit terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:157 # MgeName: phi 4795 # Cross-refs: genbank:acc:YP_001449292;genbank:gi:157166040;goa:Q6H9U9 ;interpro:IPR001453;interpro:IPR005021;uniprot:Q6H9U9;ge nbank:GeneID:5580420 Length = 553 Score = 27.7 bits (60), Expect = 0.44, Method: Compositional matrix adjust. Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%) Query: 431 LVAGGKFRVLERHQWRGMDFAAQAKSIEDLTKKYTVEYIGVDATGIGQGVFQLVRQFYP 489 VA G ++ R G D A A+ + + + +E+IG+D +G+GQ + L P Sbjct: 404 FVACGDMTIVRR---VGDDTAEVAEYVRRIHEAELLEHIGIDPSGVGQILDSLAEAGIP 459 >gi|15201|lcl|protein:vir:7028 Length: 631 # NCBI annotation: large terminase subunit # Family: family:all:697 # MgeID: mge:141 # MgeName: SP6 # Cross-refs: genbank:acc:NP_853601;genbank:gi:31711683;genbank:GeneID :1481809 Length = 631 Score = 25.8 bits (55), Expect = 1.6, Method: Compositional matrix adjust. Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 6/34 (17%) Query: 400 LPRPFDYRPV---WIGYDPS---HTGDSAGCAVI 427 +PRP+++RP+ + DP+ GD G A++ Sbjct: 369 VPRPYEWRPIQRRLMYIDPAGGGKNGDETGVAIV 402 >gi|291|lcl|protein:vir:3608 Length: 462 # NCBI annotation: TerL # Family: family:all:144 # MgeID: mge:74 # MgeName: TP901-1 # Cross-refs: genbank:acc:NP_112694;genbank:gi:13786562;genbank:GeneID :921033 Length = 462 Score = 24.6 bits (52), Expect = 3.7, Method: Compositional matrix adjust. Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 1/35 (2%) Query: 393 WSDFNPYLPRPFDYRPVWIGYDPSHTGDSAGCAVI 427 +S+F Y R +Y+ +W D + TG C+++ Sbjct: 282 YSEFQTYNARS-EYKKIWNYCDTADTGKDYLCSIV 315 >gi|3763|lcl|protein:vir:107694 Length: 527 # NCBI annotation: putative terminase large subunit # Family: family:all:144 # MgeID: mge:1518 # MgeName: T1 # Cross-refs: genbank:acc:YP_003892;genbank:gi:45686309;genbank:GeneID :2773034 Length = 527 Score = 24.3 bits (51), Expect = 3.7, Method: Compositional matrix adjust. Identities = 9/28 (32%), Positives = 14/28 (50%) Query: 146 EYQLNWHKAGLDHRIRNILKSRQIGATF 173 ++Q NWH L H + I+ R+ F Sbjct: 43 QFQPNWHHLYLCHEVEEIIAGRRGNTIF 70 >gi|13633|lcl|protein:vir:3963 Length: 462 # NCBI annotation: putative terminase large subunit # Family: family:all:144 # MgeID: mge:83 # MgeName: ul36 # Cross-refs: genbank:acc:NP_663671;genbank:gi:21716108;genbank:GeneID :951204 Length = 462 Score = 24.3 bits (51), Expect = 3.9, Method: Compositional matrix adjust. Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 1/35 (2%) Query: 393 WSDFNPYLPRPFDYRPVWIGYDPSHTGDSAGCAVI 427 +S+F Y R +Y+ +W D + TG C+++ Sbjct: 282 YSEFQTYNARS-EYKKIWNYCDTADTGKDYLCSIV 315 >gi|17621|lcl|protein:vir:816 Length: 568 # NCBI annotation: hypothetical protein # Family: family:all:147 # MgeID: mge:16 # MgeName: VT2-Sa # Cross-refs: genbank:acc:NP_050549;genbank:gi:9633446;genbank:GeneID: 1262208 Length = 568 Score = 23.5 bits (49), Expect = 7.2, Method: Compositional matrix adjust. Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 1/47 (2%) Query: 444 QWRG-MDFAAQAKSIEDLTKKYTVEYIGVDATGIGQGVFQLVRQFYP 489 W G +D A I + + Y ++G + G V +R+ YP Sbjct: 411 HWFGHLDAELFAHLISQVCRMYNNAFVGPERNNHGHAVILKLRELYP 457 >gi|25680|lcl|protein:vir:10116 Length: 568 # NCBI annotation: hypothetical protein # Family: family:all:147 # MgeID: mge:180 # MgeName: Stx2 converting bacteriophage II # Cross-refs: genbank:acc:NP_859246;genbank:gi:32171173;genbank:GeneID :2653342 Length = 568 Score = 23.5 bits (49), Expect = 7.2, Method: Compositional matrix adjust. Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 1/47 (2%) Query: 444 QWRG-MDFAAQAKSIEDLTKKYTVEYIGVDATGIGQGVFQLVRQFYP 489 W G +D A I + + Y ++G + G V +R+ YP Sbjct: 411 HWFGHLDAELFAHLISQVCRMYNNAFVGPERNNHGHAVILKLRELYP 457 >gi|51|lcl|protein:vir:3295 Length: 568 # NCBI annotation: putative large subunit terminase # Family: family:all:147 # MgeID: mge:66 # MgeName: 933W # Cross-refs: genbank:acc:NP_049511;genbank:gi:9632517;genbank:GeneID: 1262002 Length = 568 Score = 23.5 bits (49), Expect = 7.2, Method: Compositional matrix adjust. Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 1/47 (2%) Query: 444 QWRG-MDFAAQAKSIEDLTKKYTVEYIGVDATGIGQGVFQLVRQFYP 489 W G +D A I + + Y ++G + G V +R+ YP Sbjct: 411 HWFGHLDAELFAHLISQVCRMYNNAFVGPERNNHGHAVILKLRELYP 457 >gi|26240|lcl|protein:vir:2763 Length: 568 # NCBI annotation: hypothetical protein # Family: family:all:147 # MgeID: mge:59 # MgeName: Stx2 converting bacteriophage I # Cross-refs: genbank:acc:NP_612880;genbank:gi:20065962;genbank:GeneID :935714 Length = 568 Score = 23.5 bits (49), Expect = 7.2, Method: Compositional matrix adjust. Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 1/47 (2%) Query: 444 QWRG-MDFAAQAKSIEDLTKKYTVEYIGVDATGIGQGVFQLVRQFYP 489 W G +D A I + + Y ++G + G V +R+ YP Sbjct: 411 HWFGHLDAELFAHLISQVCRMYNNAFVGPERNNHGHAVILKLRELYP 457 >gi|25849|lcl|protein:vir:9949 Length: 568 # NCBI annotation: hypothetical protein # Family: family:all:147 # MgeID: mge:179 # MgeName: Stx1 converting bacteriophage # Cross-refs: genbank:acc:NP_859079;genbank:gi:32171001;genbank:GeneID :2653280 Length = 568 Score = 23.5 bits (49), Expect = 7.2, Method: Compositional matrix adjust. Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 1/47 (2%) Query: 444 QWRG-MDFAAQAKSIEDLTKKYTVEYIGVDATGIGQGVFQLVRQFYP 489 W G +D A I + + Y ++G + G V +R+ YP Sbjct: 411 HWFGHLDAELFAHLISQVCRMYNNAFVGPERNNHGHAVILKLRELYP 457 >gi|1476|lcl|protein:vir:104436 Length: 568 # NCBI annotation: putative terminase large subunit # Family: family:all:147 # MgeID: mge:1471 # MgeName: 86 # Cross-refs: genbank:acc:YP_794060;genbank:gi:116222005;genbank:GeneI D:4397501 Length = 568 Score = 23.5 bits (49), Expect = 7.2, Method: Compositional matrix adjust. Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 1/47 (2%) Query: 444 QWRG-MDFAAQAKSIEDLTKKYTVEYIGVDATGIGQGVFQLVRQFYP 489 W G +D A I + + Y ++G + G V +R+ YP Sbjct: 411 HWFGHLDAELFAHLISQVCRMYNNAFVGPERNNHGHAVILKLRELYP 457 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.319 0.134 0.402 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 273,411 Number of Sequences: 514 Number of extensions: 12694 Number of successful extensions: 124 Number of sequences better than 100.0: 43 Number of HSP's better than 100.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 13 Number of HSP's that attempted gapping in prelim test: 32 Number of HSP's gapped (non-prelim): 43 length of query: 587 length of database: 206,069 effective HSP length: 77 effective length of query: 510 effective length of database: 166,491 effective search space: 84910410 effective search space used: 84910410 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 40 (20.0 bits)