Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phiR1-RT | Genbank acc : NC_019909

Category to which the Query Phage was assigned : Myoviridae of Type2 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 262

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	176	lcl\|NC_019909.1_cdsid_YP_007236009.1	HHsearch (proba=100.00%)
Portal	171	lcl\|NC_019909.1_cdsid_YP_007236004.1	HHsearch (proba=100.00%)
TermL	168	lcl\|NC_019909.1_cdsid_YP_007236001.1	Blast (e-value=1e-167)
MTP	170	lcl\|NC_019909.1_cdsid_YP_007236003.1	Blast (e-value=5e-78)
Sheath	169	lcl\|NC_019909.1_cdsid_YP_007236002.1	HHsearch (proba=100.00%)
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	161	lcl\|NC_019909.1_cdsid_YP_007235994.1	HHsearch (proba=100.00%)
Hc2	162	lcl\|NC_019909.1_cdsid_YP_007235995.1	HHsearch (proba=100.00%)
Tc2	164	lcl\|NC_019909.1_cdsid_YP_007235997.1	HHsearch (proba=100.00%)
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:6901 protein:vir:103463 protein:vir:7214	RB69 RB32 T4	74 % 73 % 73 %
Portal	protein:vir:108049 protein:vir:103458 protein:vir:7208	JS98 RB32 T4	73 % 71 % 70 %
TermL	protein:vir:108053 protein:vir:103455 protein:vir:7202	JS98 RB32 T4	61 % 59 % 59 %
MTP	protein:vir:108048 protein:vir:98264 protein:vir:101188	JS98 RB43 44RR2.8t	76 % 70 % 69 %
Sheath	protein:vir:108052 protein:vir:103456 protein:vir:7206	JS98 RB32 T4	77 % 70 % 70 %
Ad2	protein:vir:7198 protein:vir:103451 protein:vir:6889	T4 RB32 RB69	73 % 72 % 71 %
Hc2	protein:vir:107937 protein:vir:103452 protein:vir:7199	JS98 RB32 T4	75 % 68 % 68 %
Tc2	protein:vir:107931 protein:vir:103453 protein:vir:7200	JS98 RB32 T4	67 % 53 % 53 %