Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Enc34 | Genbank acc : NC_019524

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 6) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster.

Number of sequences analyzed : 80

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	16	lcl\|NC_019524.1_cdsid_YP_007007015.1	HHsearch (proba=100.00%)
Portal	13	lcl\|NC_019524.1_cdsid_YP_007007012.1	HHsearch (proba=100.00%)
TermL	11	lcl\|NC_019524.1_cdsid_YP_007007010.1	Blast (e-value=0)
MTP	21	lcl\|NC_019524.1_cdsid_YP_007007020.1	Blast (e-value=2e-48)
Sheath	NOT FOUND
Ad1	12	lcl\|NC_019524.1_cdsid_YP_007007011.1	HHsearch (proba=99.91%)
Hc1	18	lcl\|NC_019524.1_cdsid_YP_007007017.1	HHsearch (proba=100.00%)
Ne1	19	lcl\|NC_019524.1_cdsid_YP_007007018.1	HHsearch (proba=100.00%)
Tc1	20	lcl\|NC_019524.1_cdsid_YP_007007019.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Ad1<->Hc1	6	2
Tc1<->Ad1	8	4
Ne1<->Ad1	7	3

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:6378 protein:vir:393 protein:vir:3424	BcepNazgul N15 lambda	40 % 28 % 27 %
Portal	protein:vir:6382 protein:vir:3420 protein:vir:389	BcepNazgul lambda N15	48 % 35 % 35 %
TermL	protein:vir:6384 protein:vir:79539 protein:vir:96700	BcepNazgul cdtI VP882	57 % 38 % 21 %
MTP	protein:vir:6373 protein:vir:79254 protein:vir:99223	BcepNazgul Phage MP22 DMS3	37 % 19 % 18 %
Ad1	protein:vir:6383 protein:vir:388 protein:vir:3419	BcepNazgul N15 lambda	44 % 29 % 26 %
Hc1	protein:vir:6376	BcepNazgul	32 %
Ne1	protein:vir:6375 protein:vir:3427 protein:vir:396	BcepNazgul lambda N15	48 % 17 % 14 %
Tc1	protein:vir:6374	BcepNazgul	44 %