Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 16 lcl|NC_019524.1_cdsid_YP_007007015.1 HHsearch (proba=100.00%)
Portal 13 lcl|NC_019524.1_cdsid_YP_007007012.1 HHsearch (proba=100.00%)
TermL 11 lcl|NC_019524.1_cdsid_YP_007007010.1 Blast (e-value=0)
MTP 21 lcl|NC_019524.1_cdsid_YP_007007020.1 Blast (e-value=2e-48)
Sheath NOT FOUND
Ad1 12 lcl|NC_019524.1_cdsid_YP_007007011.1 HHsearch (proba=99.91%)
Hc1 18 lcl|NC_019524.1_cdsid_YP_007007017.1 HHsearch (proba=100.00%)
Ne1 19 lcl|NC_019524.1_cdsid_YP_007007018.1 HHsearch (proba=100.00%)
Tc1 20 lcl|NC_019524.1_cdsid_YP_007007019.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.



Proteins Superfamilies Observed Intergene Distance Expected Intergene Distance
Ad1<->Hc1 6 2
Tc1<->Ad1 8 4
Ne1<->Ad1 7 3


Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:6378
protein:vir:393
protein:vir:3424
BcepNazgul
N15
lambda
40 %
28 %
27 %
Portal protein:vir:6382
protein:vir:3420
protein:vir:389
BcepNazgul
lambda
N15
48 %
35 %
35 %
TermL protein:vir:6384
protein:vir:79539
protein:vir:96700
BcepNazgul
cdtI
VP882
57 %
38 %
21 %
MTP protein:vir:6373
protein:vir:79254
protein:vir:99223
BcepNazgul
Phage MP22
DMS3
37 %
19 %
18 %
Ad1 protein:vir:6383
protein:vir:388
protein:vir:3419
BcepNazgul
N15
lambda
44 %
29 %
26 %
Hc1 protein:vir:6376BcepNazgul32 %
Ne1 protein:vir:6375
protein:vir:3427
protein:vir:396
BcepNazgul
lambda
N15
48 %
17 %
14 %
Tc1 protein:vir:6374BcepNazgul44 %