Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : PAU | Genbank acc : NC_019521

Category to which the Query Phage was assigned : Myoviridae of Type2 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 295

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	149	lcl\|NC_019521.1_cdsid_YP_007006763.1	HHsearch (proba=98.56%)
Portal	140	lcl\|NC_019521.1_cdsid_YP_007006754.1	HHsearch (proba=100.00%)
TermL	80	lcl\|NC_019521.1_cdsid_YP_007006694.1	Blast (e-value=1e-57)
MTP	NOT FOUND
Sheath	83	lcl\|NC_019521.1_cdsid_YP_007006697.1	HHsearch (proba=100.00%)
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	256	lcl\|NC_019521.1_cdsid_YP_007006870.1	HHsearch (proba=100.00%)
Hc2	81	lcl\|NC_019521.1_cdsid_YP_007006695.1	HHsearch (proba=100.00%)
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Ad2<->Hc2	175	2

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:98143 protein:vir:104549 protein:vir:106286	RB43 P-SSM4 Aeh1	20 % 21 % 19 %
Portal	protein:vir:104892 protein:vir:106999 protein:vir:98265	P-SSM2 S-PM2 RB43	21 % 20 % 20 %
TermL	protein:vir:5662 protein:vir:104946 protein:vir:108053	KVP40 P-SSM2 JS98	26 % 26 % 25 %
Sheath	protein:vir:104858 protein:vir:5663 protein:vir:106984	P-SSM2 KVP40 S-PM2	17 % 17 % 16 %
Ad2	protein:vir:107900 protein:vir:103004 protein:vir:104585	JS98 Syn9 P-SSM4	20 % 20 % 20 %
Hc2	protein:vir:103005 protein:vir:98258 protein:vir:104739	Syn9 RB43 P-SSM2	20 % 20 % 20 %