Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 147 lcl|NC_019452.1_cdsid_YP_007002787.1 HHsearch (proba=100.00%)
Portal 152 lcl|NC_019452.1_cdsid_YP_007002792.1 HHsearch (proba=100.00%)
TermL 157 lcl|NC_019452.1_cdsid_YP_007002797.1 Blast (e-value=1e-78)
MTP 153 lcl|NC_019452.1_cdsid_YP_007002793.1 Blast (e-value=3e-17)
Sheath 156 lcl|NC_019452.1_cdsid_YP_007002796.1 HHsearch (proba=100.00%)
Ad1 NOT FOUND
Hc1 NOT FOUND
Ne1 NOT FOUND
Tc1 NOT FOUND
Ad2 163 lcl|NC_019452.1_cdsid_YP_007002803.1 HHsearch (proba=100.00%)
Hc2 160 lcl|NC_019452.1_cdsid_YP_007002800.1 HHsearch (proba=100.00%)
Tc2 159 lcl|NC_019452.1_cdsid_YP_007002799.1 HHsearch (proba=100.00%)
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.



Proteins Superfamilies Observed Intergene Distance Expected Intergene Distance
Ad2<->Hc2 3 2
Tc2<->Ad2 4 3


Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:104915
protein:vir:103181
protein:vir:104549
P-SSM2
Syn9
P-SSM4
40 %
39 %
39 %
Portal protein:vir:104500
protein:vir:103177
protein:vir:106282
P-SSM4
Syn9
Aeh1
37 %
37 %
34 %
TermL protein:vir:104536
protein:vir:106989
protein:vir:103169
P-SSM4
S-PM2
Syn9
33 %
33 %
32 %
MTP protein:vir:104771
protein:vir:104504
protein:vir:106918
P-SSM2
P-SSM4
S-PM2
29 %
29 %
29 %
Sheath protein:vir:104477
protein:vir:80984
protein:vir:6594
P-SSM4
Phi1
RB49
31 %
30 %
30 %
Ad2 protein:vir:104694
protein:vir:106985
protein:vir:103004
P-SSM2
S-PM2
Syn9
36 %
30 %
29 %
Hc2 protein:vir:104739
protein:vir:106986
protein:vir:103005
P-SSM2
S-PM2
Syn9
33 %
32 %
31 %
Tc2 protein:vir:106402
protein:vir:98260
protein:vir:107931
Aeh1
RB43
JS98
22 %
22 %
21 %