Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : KF-1 | Genbank acc : NC_019420

Category to which the Query Phage was assigned : Podoviridae of Type3 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 48

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	47	lcl\|NC_019420.1_cdsid_YP_006990477.1	HHsearch (proba=100.00%)
Portal	38	lcl\|NC_019420.1_cdsid_YP_006990468.1	HHsearch (proba=100.00%)
TermL	2	lcl\|NC_019420.1_cdsid_YP_006990432.1	Blast (e-value=5e-42)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	45	lcl\|NC_019420.1_cdsid_YP_006990475.1	HHsearch (proba=97.95%)
Hc3	42	lcl\|NC_019420.1_cdsid_YP_006990472.1	HHsearch (proba=100.00%)
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Ad3<->Hc3	3	2

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:93696 protein:vir:105610 protein:vir:104439	Bcep22 F116 86	20 % 19 % 16 %
Portal	protein:vir:105619 protein:vir:10117 protein:vir:9950	F116 Stx2 converting bacteriophage II Stx1 converting bacteriophage	15 % 15 % 15 %
TermL	protein:vir:105593 protein:vir:93626 protein:vir:104436	F116 Bcep22 86	28 % 27 % 24 %
Ad3	protein:vir:5111 protein:vir:3302 protein:vir:2779	PBC5 933W Stx2 converting bacteriophage I	24 % 21 % 21 %
Hc3	protein:vir:93631 protein:vir:5120 protein:vir:105563	Bcep22 PBC5 F116	21 % 21 % 20 %