Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 62 lcl|NC_018283.1_cdsid_YP_006561146.1 HHsearch (proba=100.00%)
Portal 65 lcl|NC_018283.1_cdsid_YP_006561149.1 HHsearch (proba=100.00%)
TermL 67 lcl|NC_018283.1_cdsid_YP_006561151.1 Blast (e-value=0)
MTP 57 lcl|NC_018283.1_cdsid_YP_006561141.1 Blast (e-value=1e-45)
Sheath NOT FOUND
Ad1 66 lcl|NC_018283.1_cdsid_YP_006561150.1 HHsearch (proba=99.91%)
Hc1 60 lcl|NC_018283.1_cdsid_YP_006561144.1 HHsearch (proba=99.96%)
Ne1 59 lcl|NC_018283.1_cdsid_YP_006561143.1 HHsearch (proba=100.00%)
Tc1 58 lcl|NC_018283.1_cdsid_YP_006561142.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.



Proteins Superfamilies Observed Intergene Distance Expected Intergene Distance
Ad1<->Hc1 6 2
Tc1<->Ad1 8 4
Ne1<->Ad1 7 3


Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:6378
protein:vir:393
protein:vir:3424
BcepNazgul
N15
lambda
48 %
28 %
28 %
Portal protein:vir:6382
protein:vir:389
protein:vir:3420
BcepNazgul
N15
lambda
56 %
35 %
35 %
TermL protein:vir:6384
protein:vir:79539
protein:vir:10320
BcepNazgul
cdtI
VHML
60 %
42 %
23 %
MTP protein:vir:6373
protein:vir:99223
protein:vir:79254
BcepNazgul
DMS3
Phage MP22
37 %
22 %
21 %
Ad1 protein:vir:6383
protein:vir:3419
protein:vir:388
BcepNazgul
lambda
N15
50 %
38 %
37 %
Hc1 protein:vir:6376BcepNazgul33 %
Ne1 protein:vir:6375
protein:vir:396
protein:vir:3427
BcepNazgul
N15
lambda
46 %
19 %
18 %
Tc1 protein:vir:6374
protein:vir:79571
protein:vir:3428
BcepNazgul
cdtI
lambda
32 %
16 %
16 %