Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 30 lcl|NC_017984.1_cdsid_YP_006383780.1 HHsearch (proba=100.00%)
Portal 17 lcl|NC_017984.1_cdsid_YP_006383767.1 HHsearch (proba=100.00%)
TermL 16 lcl|NC_017984.1_cdsid_YP_006383766.1 Blast (e-value=1e-123)
MTP NOT FOUND
Sheath 40 lcl|NC_017984.1_cdsid_YP_006383790.1 HHsearch (proba=100.00%)
Ad1 32 lcl|NC_017984.1_cdsid_YP_006383782.1 HHsearch (proba=100.00%)
Hc1 38 lcl|NC_017984.1_cdsid_YP_006383788.1 HHsearch (proba=100.00%)
Ne1 35 lcl|NC_017984.1_cdsid_YP_006383785.1 HHsearch (proba=100.00%)
Tc1 39 lcl|NC_017984.1_cdsid_YP_006383789.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.



Proteins Superfamilies Observed Intergene Distance Expected Intergene Distance
Ad1<->Hc1 6 2
Ne1<->Hc1 3 2
Tc1<->Ad1 7 4
Ne1<->Tc1 4 2


Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:106734
protein:vir:78558
protein:vir:94070
Bcep1
BcepNY3
OP2
38 %
37 %
37 %
Portal protein:vir:101541
protein:vir:3648
protein:vir:78589
Bcep43
Bcep781
BcepNY3
35 %
35 %
35 %
TermL protein:vir:105705
protein:vir:96782
protein:vir:95761
ES18
phiHSIC
SMP
53 %
45 %
27 %
Sheath protein:vir:106730
protein:vir:78611
protein:vir:101576
Bcep1
BcepNY3
Bcep43
32 %
31 %
31 %
Ad1 protein:vir:94064
protein:vir:101559
protein:vir:3639
OP2
Bcep43
Bcep781
38 %
31 %
31 %
Hc1 protein:vir:78609
protein:vir:106729
protein:vir:101560
BcepNY3
Bcep1
Bcep43
23 %
23 %
22 %
Ne1 protein:vir:101563
protein:vir:78607
protein:vir:106728
Bcep43
BcepNY3
Bcep1
35 %
34 %
34 %
Tc1 protein:vir:94061
protein:vir:5259
protein:vir:78612
OP2
Aaphi23
BcepNY3
23 %
19 %
17 %