Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : AP22 | Genbank acc : NC_017984

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 7) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 89

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	30	lcl\|NC_017984.1_cdsid_YP_006383780.1	HHsearch (proba=100.00%)
Portal	17	lcl\|NC_017984.1_cdsid_YP_006383767.1	HHsearch (proba=100.00%)
TermL	16	lcl\|NC_017984.1_cdsid_YP_006383766.1	Blast (e-value=1e-123)
MTP	NOT FOUND
Sheath	40	lcl\|NC_017984.1_cdsid_YP_006383790.1	HHsearch (proba=100.00%)
Ad1	32	lcl\|NC_017984.1_cdsid_YP_006383782.1	HHsearch (proba=100.00%)
Hc1	38	lcl\|NC_017984.1_cdsid_YP_006383788.1	HHsearch (proba=100.00%)
Ne1	35	lcl\|NC_017984.1_cdsid_YP_006383785.1	HHsearch (proba=100.00%)
Tc1	39	lcl\|NC_017984.1_cdsid_YP_006383789.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Ad1<->Hc1	6	2
Ne1<->Hc1	3	2
Tc1<->Ad1	7	4
Ne1<->Tc1	4	2

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:106734 protein:vir:78558 protein:vir:94070	Bcep1 BcepNY3 OP2	38 % 37 % 37 %
Portal	protein:vir:101541 protein:vir:3648 protein:vir:78589	Bcep43 Bcep781 BcepNY3	35 % 35 % 35 %
TermL	protein:vir:105705 protein:vir:96782 protein:vir:95761	ES18 phiHSIC SMP	53 % 45 % 27 %
Sheath	protein:vir:106730 protein:vir:78611 protein:vir:101576	Bcep1 BcepNY3 Bcep43	32 % 31 % 31 %
Ad1	protein:vir:94064 protein:vir:101559 protein:vir:3639	OP2 Bcep43 Bcep781	38 % 31 % 31 %
Hc1	protein:vir:78609 protein:vir:106729 protein:vir:101560	BcepNY3 Bcep1 Bcep43	23 % 23 % 22 %
Ne1	protein:vir:101563 protein:vir:78607 protein:vir:106728	Bcep43 BcepNY3 Bcep1	35 % 34 % 34 %
Tc1	protein:vir:94061 protein:vir:5259 protein:vir:78612	OP2 Aaphi23 BcepNY3	23 % 19 % 17 %