Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : vB_XveM_DIBBI | Genbank acc : NC_017981

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 7) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster.

Number of sequences analyzed : 81

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	9	lcl\|NC_017981.1_cdsid_YP_006383616.1	HHsearch (proba=100.00%)
Portal	5	lcl\|NC_017981.1_cdsid_YP_006383612.1	HHsearch (proba=100.00%)
TermL	4	lcl\|NC_017981.1_cdsid_YP_006383611.1	Blast (e-value=1e-172)
MTP	NOT FOUND
Sheath	16	lcl\|NC_017981.1_cdsid_YP_006383623.1	HHsearch (proba=100.00%)
Ad1	12	lcl\|NC_017981.1_cdsid_YP_006383619.1	HHsearch (proba=100.00%)
Hc1	14	lcl\|NC_017981.1_cdsid_YP_006383621.1	HHsearch (proba=100.00%)
Ne1	13	lcl\|NC_017981.1_cdsid_YP_006383620.1	HHsearch (proba=100.00%)
Tc1	15	lcl\|NC_017981.1_cdsid_YP_006383622.1	HHsearch (proba=99.57%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:79642 protein:vir:107687 protein:vir:104342	TLS T1 RTP	48 % 47 % 41 %
Portal	protein:vir:79647 protein:vir:104338 protein:vir:107662	TLS RTP T1	39 % 38 % 35 %
TermL	protein:vir:107694 protein:vir:79648 protein:vir:104336	T1 TLS RTP	55 % 53 % 48 %
Sheath	protein:vir:95263 protein:vir:80052 protein:vir:5260	Felix 01 B054 Aaphi23	23 % 23 % 22 %
Ad1	protein:vir:99570 protein:vir:107702 protein:vir:79640	BcepF1 T1 TLS	28 % 27 % 27 %
Hc1	protein:vir:95261 protein:vir:5258 protein:vir:96107	Felix 01 Aaphi23 F8	27 % 21 % 13 %
Ne1	protein:vir:96105 protein:vir:99546 protein:vir:78607	F8 BcepF1 BcepNY3	28 % 25 % 25 %
Tc1	protein:vir:5259 protein:vir:78612 protein:vir:101569	Aaphi23 BcepNY3 Bcep43	20 % 16 % 15 %