Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : PBC1 | Genbank acc : NC_017976

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 1) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 50

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	8	lcl\|NC_017976.1_cdsid_YP_006383461.1	HHsearch (proba=100.00%)
Portal	5	lcl\|NC_017976.1_cdsid_YP_006383458.1	HHsearch (proba=100.00%)
TermL	2	lcl\|NC_017976.1_cdsid_YP_006383455.1	Blast (e-value=1e-163)
MTP	14	lcl\|NC_017976.1_cdsid_YP_006383467.1	Blast (e-value=3e-23)
Sheath	NOT FOUND
Ad1	10	lcl\|NC_017976.1_cdsid_YP_006383463.1	HHsearch (proba=100.00%)
Hc1	11	lcl\|NC_017976.1_cdsid_YP_006383464.1	HHsearch (proba=100.00%)
Ne1	12	lcl\|NC_017976.1_cdsid_YP_006383465.1	HHsearch (proba=100.00%)
Tc1	13	lcl\|NC_017976.1_cdsid_YP_006383466.1	HHsearch (proba=99.89%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:98871 protein:vir:94528 protein:vir:4786	BCJA1c phiJL-1 MM1	66 % 47 % 40 %
Portal	protein:vir:80959 protein:vir:38 protein:vir:9815	A500 A118 315.4	38 % 38 % 34 %
TermL	protein:vir:3027 protein:vir:9814 protein:vir:78869	PhiNIH1.1 315.4 A006	68 % 65 % 56 %
MTP	protein:vir:1579 protein:vir:98876 protein:vir:80923	phig1e BCJA1c A500	38 % 36 % 36 %
Ad1	protein:vir:43 protein:vir:80967 protein:vir:98900	A118 A500 BCJA1c	35 % 34 % 27 %
Hc1	protein:vir:80934 protein:vir:44 protein:vir:1582	A500 A118 phig1e	26 % 25 % 24 %
Ne1	protein:vir:80970 protein:vir:45 protein:vir:98892	A500 A118 BCJA1c	29 % 28 % 27 %
Tc1	protein:vir:9824 protein:vir:3037 protein:vir:4791	315.4 PhiNIH1.1 MM1	20 % 20 % 19 %