Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : SFP10 | Genbank acc : NC_016073

Category to which the Query Phage was assigned : Myoviridae of Type2 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 201

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	142	lcl\|NC_016073.1_cdsid_YP_004895313.1	HHsearch (proba=100.00%)
Portal	147	lcl\|NC_016073.1_cdsid_YP_004895318.1	HHsearch (proba=100.00%)
TermL	151	lcl\|NC_016073.1_cdsid_YP_004895322.1	Blast (e-value=4e-82)
MTP	148	lcl\|NC_016073.1_cdsid_YP_004895319.1	Blast (e-value=3e-17)
Sheath	150	lcl\|NC_016073.1_cdsid_YP_004895321.1	HHsearch (proba=100.00%)
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	156	lcl\|NC_016073.1_cdsid_YP_004895327.1	HHsearch (proba=100.00%)
Hc2	154	lcl\|NC_016073.1_cdsid_YP_004895325.1	HHsearch (proba=100.00%)
Tc2	153	lcl\|NC_016073.1_cdsid_YP_004895324.1	HHsearch (proba=100.00%)
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:104915 protein:vir:103181 protein:vir:104549	P-SSM2 Syn9 P-SSM4	41 % 39 % 39 %
Portal	protein:vir:103177 protein:vir:104500 protein:vir:106282	Syn9 P-SSM4 Aeh1	37 % 36 % 34 %
TermL	protein:vir:104536 protein:vir:106989 protein:vir:103169	P-SSM4 S-PM2 Syn9	34 % 34 % 33 %
MTP	protein:vir:104771 protein:vir:104504 protein:vir:106918	P-SSM2 P-SSM4 S-PM2	29 % 29 % 29 %
Sheath	protein:vir:80984 protein:vir:104477 protein:vir:6594	Phi1 P-SSM4 RB49	31 % 31 % 30 %
Ad2	protein:vir:104694 protein:vir:106985 protein:vir:103004	P-SSM2 S-PM2 Syn9	36 % 30 % 29 %
Hc2	protein:vir:104739 protein:vir:106986 protein:vir:103005	P-SSM2 S-PM2 Syn9	33 % 32 % 31 %
Tc2	protein:vir:106402 protein:vir:98260 protein:vir:107931	Aeh1 RB43 JS98	23 % 22 % 21 %