Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : S-CRM01 | Genbank acc : NC_015569

Category to which the Query Phage was assigned : Myoviridae of Type2 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster.

Number of sequences analyzed : 297

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	44	lcl\|NC_015569.1_cdsid_YP_004508477.1	HHsearch (proba=100.00%)
Portal	38	lcl\|NC_015569.1_cdsid_YP_004508471.1	HHsearch (proba=100.00%)
TermL	35	lcl\|NC_015569.1_cdsid_YP_004508468.1	Blast (e-value=0)
MTP	37	lcl\|NC_015569.1_cdsid_YP_004508470.1	Blast (e-value=2e-43)
Sheath	36	lcl\|NC_015569.1_cdsid_YP_004508469.1	HHsearch (proba=100.00%)
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	29	lcl\|NC_015569.1_cdsid_YP_004508462.1	HHsearch (proba=100.00%)
Hc2	30	lcl\|NC_015569.1_cdsid_YP_004508463.1	HHsearch (proba=100.00%)
Tc2	31	lcl\|NC_015569.1_cdsid_YP_004508464.1	HHsearch (proba=100.00%)
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:104915 protein:vir:103181 protein:vir:106998	P-SSM2 Syn9 S-PM2	64 % 62 % 61 %
Portal	protein:vir:104892 protein:vir:103177 protein:vir:104500	P-SSM2 Syn9 P-SSM4	51 % 51 % 50 %
TermL	protein:vir:106989 protein:vir:104946 protein:vir:104536	S-PM2 P-SSM2 P-SSM4	62 % 61 % 59 %
MTP	protein:vir:104771 protein:vir:103176 protein:vir:104504	P-SSM2 Syn9 P-SSM4	44 % 43 % 41 %
Sheath	protein:vir:104477 protein:vir:104858 protein:vir:106984	P-SSM4 P-SSM2 S-PM2	39 % 38 % 37 %
Ad2	protein:vir:104694 protein:vir:106985 protein:vir:81013	P-SSM2 S-PM2 Phi1	35 % 32 % 31 %
Hc2	protein:vir:104476 protein:vir:6890 protein:vir:100535	P-SSM4 RB69 25	30 % 30 % 30 %
Tc2	protein:vir:103006 protein:vir:104695 protein:vir:104479	Syn9 P-SSM2 P-SSM4	45 % 43 % 42 %