Query lcl|NC_015569.1_cdsid_YP_004508462.1 [gene=gp13] [protein=neck protein] [protein_id=YP_004508462.1] [location=32612..33757] Match_columns 381 No_of_seqs 56 out of 65 Neff 4.1 Searched_HMMs 1612 Date Thu Nov 7 15:31:37 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_29 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_29_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:104694 Length: 281 100.0 7E-124 4E-127 695.9 25.0 270 3-381 1-281 (281) 2 protein:vir:106428 Length: 306 100.0 2E-119 1E-122 671.5 25.8 250 1-381 2-306 (306) 3 protein:vir:103004 Length: 268 100.0 6E-120 4E-123 674.2 16.9 265 1-381 1-268 (268) 4 protein:vir:103451 Length: 309 100.0 1E-117 6E-121 661.9 22.9 253 1-381 1-309 (309) 5 protein:vir:107900 Length: 311 100.0 1E-117 6E-121 662.0 21.9 253 1-381 1-311 (311) 6 protein:vir:7198 Length: 309 # 100.0 1E-117 9E-121 661.1 22.2 253 1-381 1-309 (309) 7 protein:vir:5657 Length: 307 # 100.0 2E-117 1E-120 660.9 22.0 250 1-381 1-307 (307) 8 protein:vir:81013 Length: 310 100.0 3E-116 2E-119 653.7 23.6 251 1-380 1-310 (310) 9 protein:vir:6589 Length: 310 # 100.0 3E-116 2E-119 653.7 23.6 251 1-380 1-310 (310) 10 protein:vir:6889 Length: 308 # 100.0 3E-116 2E-119 654.0 22.6 252 1-381 1-308 (308) 11 protein:vir:104585 Length: 268 100.0 9E-118 5E-121 662.3 14.2 265 1-381 1-268 (268) 12 protein:vir:98189 Length: 307 100.0 4E-115 3E-118 647.5 22.7 250 3-380 1-307 (307) 13 protein:vir:106985 Length: 276 100.0 2E-116 1E-119 654.5 11.5 268 3-381 1-276 (276) 14 protein:vir:101153 Length: 307 100.0 5E-114 3E-117 641.8 22.8 250 1-381 1-307 (307) 15 protein:vir:101857 Length: 307 100.0 5E-114 3E-117 641.8 22.8 250 1-381 1-307 (307) 16 protein:vir:100534 Length: 314 100.0 2E-113 1E-116 638.8 23.6 250 1-381 1-314 (314) 17 protein:vir:98189 Length: 307 99.1 2.8E-14 1.7E-17 94.9 3.8 217 146-381 1-276 (307) 18 protein:vir:104694 Length: 281 99.1 2.8E-13 1.7E-16 89.4 9.1 224 137-381 1-278 (281) 19 protein:vir:106985 Length: 276 99.1 3.2E-13 2E-16 89.1 8.9 194 137-381 1-244 (276) 20 protein:vir:104585 Length: 268 99.1 1.2E-13 7.2E-17 91.5 4.3 194 137-381 1-236 (268) 21 protein:vir:101857 Length: 307 99.0 7.8E-14 4.8E-17 92.4 1.9 237 1-345 17-307 (307) 22 protein:vir:101153 Length: 307 99.0 7.8E-14 4.8E-17 92.4 1.9 237 1-345 17-307 (307) 23 protein:vir:81013 Length: 310 99.0 1E-12 6.3E-16 86.3 5.0 266 1-377 18-310 (310) 24 protein:vir:6589 Length: 310 # 99.0 1E-12 6.3E-16 86.3 5.0 266 1-377 18-310 (310) 25 protein:vir:103004 Length: 268 98.9 5.5E-13 3.4E-16 87.8 2.0 195 137-381 1-231 (268) 26 protein:vir:6889 Length: 308 # 98.9 5.3E-13 3.3E-16 87.9 0.2 269 1-377 18-308 (308) 27 protein:vir:100534 Length: 314 98.3 7.8E-11 4.8E-14 76.0 -1.9 257 1-377 17-314 (314) 28 protein:vir:5657 Length: 307 # 98.3 1.7E-09 1E-12 68.7 4.9 233 1-349 18-307 (307) 29 protein:vir:103451 Length: 309 98.1 1.6E-09 9.7E-13 68.9 1.7 265 1-373 18-309 (309) 30 protein:vir:7198 Length: 309 # 97.9 4.7E-09 2.9E-12 66.2 0.2 269 1-377 18-309 (309) 31 protein:vir:107900 Length: 311 97.4 1.9E-08 1.2E-11 62.9 -3.1 265 1-377 17-311 (311) 32 protein:vir:106428 Length: 306 96.2 6.8E-07 4.2E-10 54.4 -3.2 196 1-238 19-306 (306) 33 protein:vir:1780 Length: 67 # 56.3 0.13 8.2E-05 25.4 3.9 62 1-66 1-67 (67) No 1 >protein:vir:104694 Length: 281 # NCBI annotation: T4-like neck protein # Family: family:all:1103 # MgeID: mge:1630 # MgeName: P-SSM2 # Cross-refs: genbank:acc:YP_214352;genbank:gi:61805992;genbank:GeneID:3294213 Probab=100.00 E-value=6.5e-124 Score=695.94 Aligned_cols=270 Identities=35% Similarity=0.636 Sum_probs=245.4 Q ss_pred CCCCCCHHHHHHHHHHhcCCceEEEeecHHHHHHHHHHHHHHhhhccccCcccceeEEEEecccccCc----------ce Q lcl|NC_015569. 3 IASPQNRKEFKEYILHKLGKPVLEINVADEQIDLAINDAFQYFHEREHFNGTERVFYRLRVEQPLLDF----------FE 72 (381) Q Consensus 3 ~~~~~s~~~lkd~ilrrLGaPvl~inv~d~Qi~d~I~~al~~f~Ey~H~dG~~~~~~~~~~~~~d~~~----------f~ 72 (381) ||+|+||+|||||||||||||||||||||+|||||||||||||||| ||||++|+|++|++|+||+++ |+ T Consensus 1 ma~p~s~~eLkdyiLRrLGAPii~InVtd~Qi~DcId~Alely~Ey-HydG~~k~y~~~~i~~d~~~~g~~d~~~~~~~a 79 (281) T protein:vir:10 1 MAKPASRQQLIDYCLRKLGAPVLEINLDDDQIDDSVDDAIQLFNER-HFDGVERMFLKYKITQADLDRGRAKGTDGVGIV 79 (281) T ss_pred CCCCCCHHHHHHHHHHhcCCceEEEEcCHHHHHHHHHHHHHHhhhh-cccccccceEEEEechhhhhcceeeecCcceeE Confidence 9999999999999999999999999999999999999999999999 999999999999999999854 79 Q ss_pred eeeeeecccceeeeccceeeeeccccccccccccccccceeecccceecCCcceeEEeeEEEEecccEEeccceEEEEEe Q lcl|NC_015569. 73 TARLQETAQSAVPQVPGAGAVDQLTLVTPGTNYTPTTDGSETRSNQPTAPANSGVTGTGLTVNWGESRTVSGGLVSVSIY 152 (381) Q Consensus 73 ~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ny~~~p~~~~v~~v~~~~~~~~~~~~~~~~f~~~~~ 152 (381) +|+|+||+++ |+|+||++|+ +++||+++|| +|.|+.+++... |.++ T Consensus 80 vt~i~~t~~~----~~G~at~~w~-----------------~~~ny~~~p~--~v~G~~~~~g~~-s~~~---------- 125 (281) T protein:vir:10 80 TTTATSTNIA----GYGTTTSSWY-----------------ETSNFLQVPD--SVVGIEKIFKFD-TSTI---------- 125 (281) T ss_pred EEeeeccccc----cccccccchh-----------------hcccceecCc--cceeeeeecccc-cccc---------- Confidence 9999999876 7888887776 6789999996 466655544422 2133 Q ss_pred eccccceecceeEEecCCCCcceeEcceeeeeEEeeecceeecCCeEEcCCCceeEEEEEEecCccccccCceeeehhhh Q lcl|NC_015569. 153 SAGEGYSVGDQVIISGGNNDAVFQVTAVKDQTPLYGVEIVEQQRNWITLPDDVIGVTKVFKVGSSSNLMTGGVIPAAFFT 232 (381) Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~eyhydg~~~~y~~~~~~~~~~~~nyi~Lpd~V~~VtkI~r~~~ss~~~~gg~a~~~~ft 232 (381) .+|.|+++| T Consensus 126 ---------------------------------------------------------------------~~~~f~~~y-- 134 (281) T protein:vir:10 126 ---------------------------------------------------------------------SGGMFSIKY-- 134 (281) T ss_pred ---------------------------------------------------------------------Ccceeecch-- Confidence 334455555 Q ss_pred hhhhhhhcccCccccchHHHHHHHHHHHHHHHHHhcCCcceeEccCCCeEEEEEccc-ccCCCEEEEEEEeccCCccccc Q lcl|NC_015569. 233 NPFLNGGFSNSGGMQFDLVSWYTMQEYLNTLNFLLRPPVVFNFNQRTHRLHIHSNTT-LRLGDYLLMECSVKPSPDVYPD 311 (381) Q Consensus 233 ~~~ln~~~~~~~~~g~~L~~y~~~~qY~~~l~~~l~~~~~f~fN~~t~rL~i~~d~~-~~~gd~lviE~y~k~~Pd~~~~ 311 (381) |.|||+.|+++++ +|++|+|++||+++++++|++.++||||++++||+++.||. ..+|+++++||||+.+|+++++ T Consensus 135 q~~lndly~~~~~---~L~~y~m~~qyl~~~d~v~n~~~~~~~n~~~drL~~d~d~~~~~~d~~~~~~~y~~~dP~~~~~ 211 (281) T protein:vir:10 135 QLFLNDLYNFNSV---ELLQYSMVKSYLEDIDFLLTTDKQVRFNKRQDRLYLDIDWGAESLDNFLVLDCYRALDPTSFTQ 211 (281) T ss_pred hhhhhhhccCCch---hhhhhhhhhhhhhhhHhhcCCCceEEEeeeCCeEEEEEecccccCCCceEEeeeeccCCccccc Confidence 7788888888864 89999999999999999999999999999999999999984 6799999999999999999999 Q ss_pred cccchHHHHHHHHHHHHHHhHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHHhhcCCCceeeeC Q lcl|NC_015569. 312 IWNDMWLKKYATALVKYQWGVNLTKHTDVKLPGGITLNGEMIYNEAKQEIAEIIQKFAMDWADPVLDLVG 381 (381) Q Consensus 312 vYNd~WlKdYATALvK~~wGqNL~KfqG~qLPGGVTlnG~~I~~EA~~Eie~LeEeL~~~~~~Pp~~mmG 381 (381) +|||||||||||||+|++|||||+|||||||||||||||+||++||++|+|+|||||+++|++||++||| T Consensus 212 ~YNnrWvKdYaTAL~K~~wGq~L~K~qG~qLPGGvTvnG~~i~eeA~~E~e~L~eel~~~~~~pP~dmiG 281 (281) T protein:vir:10 212 VYNDPFLKLYLTALMKRQWGQNLIKFRGVKLPGGIELNGREIFDDAERDIESLRSRMASEYELPPYDFVG 281 (281) T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHhhccCCCcccccC Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 No 2 >protein:vir:106428 Length: 306 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:1474 # MgeName: Aeh1 # Cross-refs: genbank:acc:NP_944100;genbank:gi:38640144;genbank:GeneID:2658189 Probab=100.00 E-value=1.9e-119 Score=671.50 Aligned_cols=250 Identities=27% Similarity=0.415 Sum_probs=228.0 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEeecHHHHHHHHHHHHHHhhhccccCcccceeEEEEecccccCcceeeeeeecc Q lcl|NC_015569. 1 MSIASPQNRKEFKEYILHKLGKPVLEINVADEQIDLAINDAFQYFHEREHFNGTERVFYRLRVEQPLLDFFETARLQETA 80 (381) Q Consensus 1 m~~~~~~s~~~lkd~ilrrLGaPvl~inv~d~Qi~d~I~~al~~f~Ey~H~dG~~~~~~~~~~~~~d~~~f~~~~i~~~~ 80 (381) ||+++|+||+|||||||||||||||+|||||+||+||||||||||+|| ||||++|+|++|++|||+. T Consensus 2 Ms~~~~~s~~eLkdyiLRrLGAPii~IeVtd~Qi~DcIdrAlely~Ey-HydG~~k~y~~~~i~ed~~------------ 68 (306) T protein:vir:10 2 MSNNFVRNPRELKDLILRRLGAPVIQVEVTEDHIYDSIGRALELYKEY-HHDGLNKAYLSVKLNQEQA------------ 68 (306) T ss_pred CCccCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHHhhh-hccccccceEEEEechhcc------------ Confidence 999999999999999999999999999999999999999999999999 9999999999999998753 Q ss_pred cceeeeccceeeeeccccccccccccccccceeecccceecCCcceeEEeeEEEEecccEEeccceEEEEEeecccccee Q lcl|NC_015569. 81 QSAVPQVPGAGAVDQLTLVTPGTNYTPTTDGSETRSNQPTAPANSGVTGTGLTVNWGESRTVSGGLVSVSIYSAGEGYSV 160 (381) Q Consensus 81 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ny~~~p~~~~v~~v~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 160 (381) T Consensus 69 -------------------------------------------------------------------------------- 68 (306) T protein:vir:10 69 -------------------------------------------------------------------------------- 68 (306) T ss_pred -------------------------------------------------------------------------------- Confidence Q ss_pred cceeEEecCCCCcceeEcceeeeeEEeeecceeecCCeEEc-CCCceeEEEEEEecCccccccCceeeehhhhhhhhhhh Q lcl|NC_015569. 161 GDQVIISGGNNDAVFQVTAVKDQTPLYGVEIVEQQRNWITL-PDDVIGVTKVFKVGSSSNLMTGGVIPAAFFTNPFLNGG 239 (381) Q Consensus 161 ~~~~~~~~~~~~~eyhydg~~~~y~~~~~~~~~~~~nyi~L-pd~V~~VtkI~r~~~ss~~~~gg~a~~~~ft~~~ln~~ 239 (381) ++|||++ ||+|++|+||+|.++++..+++|.+.++||++|++ +. T Consensus 69 ----------------------------------~~g~~d~~~~~v~aVtkI~r~~~g~~~tm~Gna~~~~~q~FL~-~l 113 (306) T protein:vir:10 69 ----------------------------------ATGYIDISAYPVFAITKIIRHKSMMWGGLGGGATLNFFTDFLT-TL 113 (306) T ss_pred ----------------------------------cCCeEecCCccceeeeeeeccCcceeeeccccccccchhhhhh-hh Confidence 2226666 66899999999999999999999999999887754 33 Q ss_pred c--------ccCccccchHHHHHHHHHHHHHHHHHhcCCcceeEccCCCeEEEEEcccccCCCEEEEEEEeccC------ Q lcl|NC_015569. 240 F--------SNSGGMQFDLVSWYTMQEYLNTLNFLLRPPVVFNFNQRTHRLHIHSNTTLRLGDYLLMECSVKPS------ 305 (381) Q Consensus 240 ~--------~~~~~~g~~L~~y~~~~qY~~~l~~~l~~~~~f~fN~~t~rL~i~~d~~~~~gd~lviE~y~k~~------ 305 (381) + ..+++||++|+||+|++|||++|++||+|.|+||||+++++|+|.+| ++++|.|++|+|+|++ T Consensus 114 ~~~~~~~~~~g~~~~g~dL~yy~~~~sy~~~lq~ml~p~pDf~~n~~~~ql~i~~n--f~~~D~l~~e~~~ks~~~v~~~ 191 (306) T protein:vir:10 114 GGGPQGISYHGPFGALGNIGFFAQFQSYQNMMMDQLDPLPDYWLDPVNGVVQLTGN--FRENDVIIMEVHIQNFVELEKS 191 (306) T ss_pred cccccchhhccchhhhhhhhHHHHHHHHHHHHHHHhccccceeEcCCcceEEEEEe--ecCCcEEEEEeecccccccchh Confidence 2 12456678999999999999999999999999999999999999997 6689999999998863 Q ss_pred ----------------------------------------CccccccccchHHHHHHHHHHHHHHhHHHHHhcCCcCCCc Q lcl|NC_015569. 306 ----------------------------------------PDVYPDIWNDMWLKKYATALVKYQWGVNLTKHTDVKLPGG 345 (381) Q Consensus 306 ----------------------------------------Pd~~~~vYNd~WlKdYATALvK~~wGqNL~KfqG~qLPGG 345 (381) |..++++|||||||||||||+|++|||||+|||||||||| T Consensus 192 ~~~~~g~g~~~~~~~~~~~~~~~~np~~~l~~~~~g~~~~~~~~~~~YNnrWvKdYaTAL~K~~wGq~L~K~qG~qLPGG 271 (306) T protein:vir:10 192 VRGVAGAGIVAGGPTSADNKDKWMNPYSRMPSNVAGRARSEFPDQGVYNVRWVKDYATTLTKEVWGEILAKHQGMSLPGG 271 (306) T ss_pred hhcccccccccCCccccchhhhhccchhhhccccccccCCCcccccccchhHHHHHHHHHHHHHHHHHHHHhCCccCCCc Confidence 3345788999999999999999999999999999999999 Q ss_pred eeecHHHHHHHHHHHHHHHHHHHHhhcCCCceeeeC Q lcl|NC_015569. 346 ITLNGEMIYNEAKQEIAEIIQKFAMDWADPVLDLVG 381 (381) Q Consensus 346 VTlnG~~I~~EA~~Eie~LeEeL~~~~~~Pp~~mmG 381 (381) |||||+||++||++|+|+|||||+++|+ ||.++|| T Consensus 272 VTvdG~~i~eeA~~E~e~LreEL~~~~~-~ppi~mg 306 (306) T protein:vir:10 272 VTVDGTRLVEEARQEKEVLRQELLLLEE-PLPILMG 306 (306) T ss_pred eeecHHHHHHHHHHHHHHHHHHhhhccC-CCccccC Confidence 9999999999999999999999999987 5555888 No 3 >protein:vir:103004 Length: 268 # NCBI annotation: gp109 # Family: family:all:1103 # MgeID: mge:1583 # MgeName: Syn9 # Cross-refs: genbank:acc:YP_717776;genbank:gi:113200738;genbank:GeneID:4239008 Probab=100.00 E-value=6e-120 Score=674.19 Aligned_cols=265 Identities=29% Similarity=0.598 Sum_probs=249.1 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEeecHHHHHHHHHHHHHHhhhccccCcccceeEEEEecccccCcceeeeeeecc Q lcl|NC_015569. 1 MSIASPQNRKEFKEYILHKLGKPVLEINVADEQIDLAINDAFQYFHEREHFNGTERVFYRLRVEQPLLDFFETARLQETA 80 (381) Q Consensus 1 m~~~~~~s~~~lkd~ilrrLGaPvl~inv~d~Qi~d~I~~al~~f~Ey~H~dG~~~~~~~~~~~~~d~~~f~~~~i~~~~ 80 (381) ||+|+|+||+|||||||||||||||+|||||+|||||||||||||||| ||||++|+|++|++|+|+++ T Consensus 1 Ms~~~~~s~~eLkdyiLRrLGaPii~InVtd~Qi~DcId~Alelf~Ey-HydG~~k~y~~~~it~~~~~----------- 68 (268) T protein:vir:10 1 MSATRPASKTELKNYALRRLGYPAIDINVCDEQLDDLVEEAIDYFQEY-HYNGSYQSMMKIEVTDAIKT----------- 68 (268) T ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhh-hccchhcceEEEEechHHhh----------- Confidence 999999999999999999999999999999999999999999999999 99999999999999999863 Q ss_pred cceeeeccceeeeeccccccccccccccccceeecccceecCCcceeEEeeEEEEecccEEeccceEEEEEeecccccee Q lcl|NC_015569. 81 QSAVPQVPGAGAVDQLTLVTPGTNYTPTTDGSETRSNQPTAPANSGVTGTGLTVNWGESRTVSGGLVSVSIYSAGEGYSV 160 (381) Q Consensus 81 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ny~~~p~~~~v~~v~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 160 (381) .|+..+|+|+++|+|+++|+ T Consensus 69 ~g~~~t~~g~~~~~~~~~fi------------------------------------------------------------ 88 (268) T protein:vir:10 69 AAQSTTQQGSTNWYENNNYV------------------------------------------------------------ 88 (268) T ss_pred hhhhcccCccccccccccce------------------------------------------------------------ Confidence 46777888887777777776 Q ss_pred cceeEEecCCCCcceeEcceeeeeEEeeecceeecCCeEEcCCCceeEEEEEEecCccccccCceeeehhhhhhhhhhhc Q lcl|NC_015569. 161 GDQVIISGGNNDAVFQVTAVKDQTPLYGVEIVEQQRNWITLPDDVIGVTKVFKVGSSSNLMTGGVIPAAFFTNPFLNGGF 240 (381) Q Consensus 161 ~~~~~~~~~~~~~eyhydg~~~~y~~~~~~~~~~~~nyi~Lpd~V~~VtkI~r~~~ss~~~~gg~a~~~~ft~~~ln~~~ 240 (381) .+||+|++|++||...+++..+++|+|...| |++||+.+ T Consensus 89 ---------------------------------------~~pp~v~gv~~vf~~~~~~~~~~~n~~~~~~--q~~lnd~~ 127 (268) T protein:vir:10 89 ---------------------------------------SLPPGVLGVNHVYTNIGASSVVPGNIFNIKY--QIFLNDIY 127 (268) T ss_pred ---------------------------------------ecCCceeehhhhhhcccccccccccccccch--hhhhcchh Confidence 1699999999999877788888999999999 99999998 Q ss_pred ccCccccchHHHHHHHHHHHHHHHHHhcC--CcceeEccCCCeEEEEEccc-ccCCCEEEEEEEeccCCccccccccchH Q lcl|NC_015569. 241 SNSGGMQFDLVSWYTMQEYLNTLNFLLRP--PVVFNFNQRTHRLHIHSNTT-LRLGDYLLMECSVKPSPDVYPDIWNDMW 317 (381) Q Consensus 241 ~~~~~~g~~L~~y~~~~qY~~~l~~~l~~--~~~f~fN~~t~rL~i~~d~~-~~~gd~lviE~y~k~~Pd~~~~vYNd~W 317 (381) +.++ +.|+.|+|+++|+++++++++. .++++||.+++|||++.||. ..++|++++||+++.+|++++++||||| T Consensus 128 ~~~~---g~il~y~~~~~~l~~~~~~~~s~~~~~~~~~~~~~rly~d~d~~~~~~~~~~~i~~~~~~dP~~~~~~YNn~W 204 (268) T protein:vir:10 128 AMTH---GQILHYFMTSQYLETLDWVTNSQANRRVKFNEHQARLYLDFDWDTLQAGDFIMVDLTMRQDPDEYTGMYNDAW 204 (268) T ss_pred hhhH---HhhhhhhhccceeehhhhhhcccCccceEEEeeeceeEEeeccCCcccchhhhhHhhcccCCchhhhhhhhhH Confidence 8765 3799999999999999999884 47899999999999999995 5699999999999999999999999999 Q ss_pred HHHHHHHHHHHHHhHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHHhhcCCCceeeeC Q lcl|NC_015569. 318 LKKYATALVKYQWGVNLTKHTDVKLPGGITLNGEMIYNEAKQEIAEIIQKFAMDWADPVLDLVG 381 (381) Q Consensus 318 lKdYATALvK~~wGqNL~KfqG~qLPGGVTlnG~~I~~EA~~Eie~LeEeL~~~~~~Pp~~mmG 381 (381) ||||||||+|++|||||+|||||||||||||||+||++||++|+|+|||||++++++||++||| T Consensus 205 vKdYatAL~K~~wGq~L~K~qG~qLPGGvTlnG~~i~eeA~~E~e~L~eel~~~~~~Pp~~liG 268 (268) T protein:vir:10 205 LKDYVEALFQQQWGRNLSKYDGIQMLGGVTLNGRQILEDASQFKKDLEENIRKEYELPPMDLIG 268 (268) T ss_pred HHHHHHHHHHHHHHHHHHHhcCccCCCceeeCHHHHHHHHHHHHHHHHHHHHhhcCCCcceecC Confidence 9999999999999999999999999999999999999999999999999999999999999999 No 4 >protein:vir:103451 Length: 309 # NCBI annotation: neck protein # Family: family:all:1103 # MgeID: mge:1542 # MgeName: RB32 # Cross-refs: genbank:acc:YP_803103;genbank:gi:116326383;genbank:GeneID:4405480 Probab=100.00 E-value=1e-117 Score=661.93 Aligned_cols=253 Identities=29% Similarity=0.486 Sum_probs=233.2 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEeecHHHHHHHHHHHHHHhhhccccCcccceeEEEEecccccCcceeeeeeecc Q lcl|NC_015569. 1 MSIASPQNRKEFKEYILHKLGKPVLEINVADEQIDLAINDAFQYFHEREHFNGTERVFYRLRVEQPLLDFFETARLQETA 80 (381) Q Consensus 1 m~~~~~~s~~~lkd~ilrrLGaPvl~inv~d~Qi~d~I~~al~~f~Ey~H~dG~~~~~~~~~~~~~d~~~f~~~~i~~~~ 80 (381) ||+++|+||+|||||||||||||||||||||||||||||||||||||| ||||++|+|++|++|+|| T Consensus 1 ms~~~~~s~~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~Alqly~Ey-HydG~~k~y~~~~i~~de------------- 66 (309) T protein:vir:10 1 MSGYNSQNPKELKDVILRRLGAPIINVELTPDQIYDCIQRALELYGEY-HFDGLNKGFHVFYVGDDE------------- 66 (309) T ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhh-hccccccceEEEEeCchh------------- Confidence 999999999999999999999999999999999999999999999999 999999999999999633 Q ss_pred cceeeeccceeeeeccccccccccccccccceeecccceecCCcceeEEeeEEEEecccEEeccceEEEEEeecccccee Q lcl|NC_015569. 81 QSAVPQVPGAGAVDQLTLVTPGTNYTPTTDGSETRSNQPTAPANSGVTGTGLTVNWGESRTVSGGLVSVSIYSAGEGYSV 160 (381) Q Consensus 81 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ny~~~p~~~~v~~v~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 160 (381) T Consensus 67 -------------------------------------------------------------------------------- 66 (309) T protein:vir:10 67 -------------------------------------------------------------------------------- 66 (309) T ss_pred -------------------------------------------------------------------------------- Confidence Q ss_pred cceeEEecCCCCcceeEcceeeeeEEeeecceeecCCeEEc-CCCceeEEEEEEecCccccccCceeeehhhhhhhh--- Q lcl|NC_015569. 161 GDQVIISGGNNDAVFQVTAVKDQTPLYGVEIVEQQRNWITL-PDDVIGVTKVFKVGSSSNLMTGGVIPAAFFTNPFL--- 236 (381) Q Consensus 161 ~~~~~~~~~~~~~eyhydg~~~~y~~~~~~~~~~~~nyi~L-pd~V~~VtkI~r~~~ss~~~~gg~a~~~~ft~~~l--- 236 (381) ++.++|||++ |++|++|++|+|+++++..+++|.++|+||++|++ T Consensus 67 -------------------------------~~~~~gv~d~~~~~v~avt~i~~t~~gs~~s~dg~aty~w~~dfi~g~~ 115 (309) T protein:vir:10 67 -------------------------------EKYKTGVFDLRGSNVFAVTRILRTNVGSITSMDGNATYPWFTDFLLGMA 115 (309) T ss_pred -------------------------------hhhccceeeccCcchhhhhhhhhcccccccccCcccccccccchhhhhh Confidence 2345678888 67999999999999999999999999999999997 Q ss_pred --hhhcc-------cCccccchHHHHHHHHHHHHHHHHHhcCCcceeEccCCCeEEEEEcccccCCCEEEEEEEec---- Q lcl|NC_015569. 237 --NGGFS-------NSGGMQFDLVSWYTMQEYLNTLNFLLRPPVVFNFNQRTHRLHIHSNTTLRLGDYLLMECSVK---- 303 (381) Q Consensus 237 --n~~~~-------~~~~~g~~L~~y~~~~qY~~~l~~~l~~~~~f~fN~~t~rL~i~~d~~~~~gd~lviE~y~k---- 303 (381) +++++ .++++|++|+||++++||+++|++||+|.|+||||++++||++.+| ++++|+|++|+|+| T Consensus 116 ~v~g~~~~s~~~~~~pn~~g~dl~y~~~l~sy~~m~~d~l~~~pd~~yN~~~~~l~i~gn--~~~~~~i~~e~~~k~y~d 193 (309) T protein:vir:10 116 GINGGMGTSCNRFYGPNAFGADLGYFTQLTSYMGMMQDMLSPIPDFWFNSANEQLKVMGN--FQKYDLIIVESWTKSYID 193 (309) T ss_pred hhhcccccccccccCcccceehhHHHHhHHHHHHHHHHHhcccCCceeccccceEEEEEe--eecCceEEEEEecchhcc Confidence 33322 2378889999999999999999999999999999999999999997 77898888888666 Q ss_pred ---------------------------------------cCCccccccccchHHHHHHHHHHHHHHhHHHHHhcCCcCCC Q lcl|NC_015569. 304 ---------------------------------------PSPDVYPDIWNDMWLKKYATALVKYQWGVNLTKHTDVKLPG 344 (381) Q Consensus 304 ---------------------------------------~~Pd~~~~vYNd~WlKdYATALvK~~wGqNL~KfqG~qLPG 344 (381) .+|++++++|||||||||||||+|++|||||+||||||||| T Consensus 194 ~~~~v~~~~g~~~~~~~d~~~~~~~~~~~~~~l~~~~r~~dp~~~~~~YNn~WvKdYaTAL~K~~wGqnL~K~qG~qLPG 273 (309) T protein:vir:10 194 TNKMVGNTVGYGTVGPQDSWSLSERYNNPDHNLVGRVVGQDPDVKQGAYNNRWVKDYATALAKELNGQILARHQGMMLPG 273 (309) T ss_pred cchhhccccccccccCcccccccccccccchhhhcceeccCCcchhhhcchhHHHHHHHHHHHHHHHHHHHHhCCccCCC Confidence 56667789999999999999999999999999999999999 Q ss_pred ceeecHHHHHHHHHHHHHHHHHHHHhhcCCCceeeeC Q lcl|NC_015569. 345 GITLNGEMIYNEAKQEIAEIIQKFAMDWADPVLDLVG 381 (381) Q Consensus 345 GVTlnG~~I~~EA~~Eie~LeEeL~~~~~~Pp~~mmG 381 (381) ||||||+|||+||++|+|+|||||++ ..+|+.++|| T Consensus 274 GVTlnG~~i~eeA~~E~e~LreeL~~-l~pP~~~i~G 309 (309) T protein:vir:10 274 GVTIDGQRLIEEARLEKEALREELYL-LDPPFGIFVG 309 (309) T ss_pred ceeecHHHHHHHHHHHHHHHHHHHHh-ccCCcccccC Confidence 99999999999999999999999998 4778888999 No 5 >protein:vir:107900 Length: 311 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:2002 # MgeName: JS98 # Cross-refs: genbank:acc:YP_001595289;genbank:gi:161622595;genbank:GeneID:5783619 Probab=100.00 E-value=1e-117 Score=661.97 Aligned_cols=253 Identities=26% Similarity=0.456 Sum_probs=232.3 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEeecHHHHHHHHHHHHHHhhhccccCcccceeEEEEecccccCcceeeeeeecc Q lcl|NC_015569. 1 MSIASPQNRKEFKEYILHKLGKPVLEINVADEQIDLAINDAFQYFHEREHFNGTERVFYRLRVEQPLLDFFETARLQETA 80 (381) Q Consensus 1 m~~~~~~s~~~lkd~ilrrLGaPvl~inv~d~Qi~d~I~~al~~f~Ey~H~dG~~~~~~~~~~~~~d~~~f~~~~i~~~~ 80 (381) |+ ++|+||+|||||||||||||||||||||+||+||||||||||||| ||||++|+|++|++|+||+..| T Consensus 1 MA-~~~~s~~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~ALely~Ey-HydG~~k~y~~~~it~dd~~~~--------- 69 (311) T protein:vir:10 1 MA-SESYNPKQLKDAILRRLGAPITNIEVTTDQVYDCIQRALELYGEY-HYNGYNKGYQAFYIGHDDEEKF--------- 69 (311) T ss_pred CC-CCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhh-hccccccceEEEEecchhhhhc--------- Confidence 44 499999999999999999999999999999999999999999999 9999999999999998765443 Q ss_pred cceeeeccceeeeeccccccccccccccccceeecccceecCCcceeEEeeEEEEecccEEeccceEEEEEeecccccee Q lcl|NC_015569. 81 QSAVPQVPGAGAVDQLTLVTPGTNYTPTTDGSETRSNQPTAPANSGVTGTGLTVNWGESRTVSGGLVSVSIYSAGEGYSV 160 (381) Q Consensus 81 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ny~~~p~~~~v~~v~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 160 (381) T Consensus 70 -------------------------------------------------------------------------------- 69 (311) T protein:vir:10 70 -------------------------------------------------------------------------------- 69 (311) T ss_pred -------------------------------------------------------------------------------- Confidence Q ss_pred cceeEEecCCCCcceeEcceeeeeEEeeecceeecCCeEEcCC-CceeEEEEEEecCccccccCceeeehhhhhhhhh-- Q lcl|NC_015569. 161 GDQVIISGGNNDAVFQVTAVKDQTPLYGVEIVEQQRNWITLPD-DVIGVTKVFKVGSSSNLMTGGVIPAAFFTNPFLN-- 237 (381) Q Consensus 161 ~~~~~~~~~~~~~eyhydg~~~~y~~~~~~~~~~~~nyi~Lpd-~V~~VtkI~r~~~ss~~~~gg~a~~~~ft~~~ln-- 237 (381) ++|||+|++ +|++||+|+|.++++..+++|.++|+||+++++. T Consensus 70 ----------------------------------~~g~~d~~~~~v~avt~i~~t~~gs~~s~dg~atY~w~~d~v~G~~ 115 (311) T protein:vir:10 70 ----------------------------------RNGVFDLKGRNIFAVTQILRTNVGSLTSMDGQATYPWFTDFVLGLA 115 (311) T ss_pred ----------------------------------cCCceecCCcchhHHHHhhccccccccCCCCcccccccCchhhhhh Confidence 456778886 8999999999999999999999999999999973 Q ss_pred h---hc------ccCccccchHHHHHHHHHHHHHHHHHhcCCcceeEccCCCeEEEEEcccccCCCEEEEEEEeccC--- Q lcl|NC_015569. 238 G---GF------SNSGGMQFDLVSWYTMQEYLNTLNFLLRPPVVFNFNQRTHRLHIHSNTTLRLGDYLLMECSVKPS--- 305 (381) Q Consensus 238 ~---~~------~~~~~~g~~L~~y~~~~qY~~~l~~~l~~~~~f~fN~~t~rL~i~~d~~~~~gd~lviE~y~k~~--- 305 (381) + +. ..+++||++|++|++++||+++|+++|+|.|+||||++|++|+|.+| |++||+|++|||+|+. T Consensus 116 ~v~g~~~s~~~~~g~n~fg~~lgyf~~l~~Y~~~l~dl~~p~~d~~yn~~t~~l~i~gn--f~~g~~i~~e~~~k~~~~v 193 (311) T protein:vir:10 116 GINGGLGSSCNSFGPNAFGADLGYFTQLMQYRSMMQDLLVPLPDYWYNDATEQLKVMGN--FVKGDFIVIEVYTRSFNGV 193 (311) T ss_pred hhhccccccccccccccccchHHHHHHHHHHHHHHHHhhccccccccccccceEEEeec--cccccEEEEEEeccccccc Confidence 2 21 12488899999999999999999999999999999999999999998 7789999999998864 Q ss_pred -------------------------------------------CccccccccchHHHHHHHHHHHHHHhHHHHHhcCCcC Q lcl|NC_015569. 306 -------------------------------------------PDVYPDIWNDMWLKKYATALVKYQWGVNLTKHTDVKL 342 (381) Q Consensus 306 -------------------------------------------Pd~~~~vYNd~WlKdYATALvK~~wGqNL~KfqG~qL 342 (381) |++++++|||||||||||||+|++|||||+||||||| T Consensus 194 ~~~v~~~~~~~~~~~~~~~d~~~~~~~~~n~~~~l~~~rag~dp~~~~~~YNnrWvKdYaTALvK~~wGq~L~K~qG~qL 273 (311) T protein:vir:10 194 DSMVGNTAGYGYASGGCDENEWSPGAIWDNPARRISGMRAGEDLGLQDGAYNNRWVKDYATALVKEVNGNILAKHQGMQL 273 (311) T ss_pred hhhhhhhhhhhcccccccccccccchhhcccccccccceeecCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCccC Confidence 4455788999999999999999999999999999999 Q ss_pred CCceeecHHHHHHHHHHHHHHHHHHHHhhcCCCceeeeC Q lcl|NC_015569. 343 PGGITLNGEMIYNEAKQEIAEIIQKFAMDWADPVLDLVG 381 (381) Q Consensus 343 PGGVTlnG~~I~~EA~~Eie~LeEeL~~~~~~Pp~~mmG 381 (381) ||||||||+||++||++|+|||||||.+ +++||++||| T Consensus 274 PGGvTlnG~~i~eeA~~E~e~LreEl~~-~~~Pp~~liG 311 (311) T protein:vir:10 274 AGGTTVDGIRLIEEARLEKERLREELDL-LDPPTPILIG 311 (311) T ss_pred CCceeecHHHHHHHHHHHHHHHHHHHhh-cCCCchhccC Confidence 9999999999999999999999999976 8999999999 No 6 >protein:vir:7198 Length: 309 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:142 # MgeName: T4 # Cross-refs: genbank:acc:NP_049772;genbank:gi:9632587;genbank:GeneID:1258809 Probab=100.00 E-value=1.5e-117 Score=661.12 Aligned_cols=253 Identities=30% Similarity=0.483 Sum_probs=233.1 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEeecHHHHHHHHHHHHHHhhhccccCcccceeEEEEecccccCcceeeeeeecc Q lcl|NC_015569. 1 MSIASPQNRKEFKEYILHKLGKPVLEINVADEQIDLAINDAFQYFHEREHFNGTERVFYRLRVEQPLLDFFETARLQETA 80 (381) Q Consensus 1 m~~~~~~s~~~lkd~ilrrLGaPvl~inv~d~Qi~d~I~~al~~f~Ey~H~dG~~~~~~~~~~~~~d~~~f~~~~i~~~~ 80 (381) ||+++|+||+|||||||||||||||||||||||||||||||||||||| ||||++|+|++|++|+|| T Consensus 1 m~~~~p~s~~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~Alqly~Ey-HydG~~k~yl~~~i~~de------------- 66 (309) T protein:vir:71 1 MSGYNPQNPKELKDVILRRLGAPIINVELTPDQIYDCIQRALELYGEY-HFDGLNKGFHVFYVGDDE------------- 66 (309) T ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhh-hccccccceEEEEeCchh------------- Confidence 999999999999999999999999999999999999999999999999 999999999999999632 Q ss_pred cceeeeccceeeeeccccccccccccccccceeecccceecCCcceeEEeeEEEEecccEEeccceEEEEEeecccccee Q lcl|NC_015569. 81 QSAVPQVPGAGAVDQLTLVTPGTNYTPTTDGSETRSNQPTAPANSGVTGTGLTVNWGESRTVSGGLVSVSIYSAGEGYSV 160 (381) Q Consensus 81 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ny~~~p~~~~v~~v~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 160 (381) T Consensus 67 -------------------------------------------------------------------------------- 66 (309) T protein:vir:71 67 -------------------------------------------------------------------------------- 66 (309) T ss_pred -------------------------------------------------------------------------------- Confidence Q ss_pred cceeEEecCCCCcceeEcceeeeeEEeeecceeecCCeEEcC-CCceeEEEEEEecCccccccCceeeehhhhhhhh--- Q lcl|NC_015569. 161 GDQVIISGGNNDAVFQVTAVKDQTPLYGVEIVEQQRNWITLP-DDVIGVTKVFKVGSSSNLMTGGVIPAAFFTNPFL--- 236 (381) Q Consensus 161 ~~~~~~~~~~~~~eyhydg~~~~y~~~~~~~~~~~~nyi~Lp-d~V~~VtkI~r~~~ss~~~~gg~a~~~~ft~~~l--- 236 (381) ++.++|||+++ ++|++||+|+|.++++.++++|.++++||++|++ T Consensus 67 -------------------------------~~~~~gv~d~~~~~v~aVt~i~~t~~gs~~t~dg~aty~w~~dfi~g~~ 115 (309) T protein:vir:71 67 -------------------------------ERYKTGVFDLRGSNVFAVTRILRTNIGSITSMDGNATYPWFTDFLLGMA 115 (309) T ss_pred -------------------------------hhhcccceecCCcchhhhhhhhcCCcccccccCcccccccccchhhhhh Confidence 34467788895 5999999999999999999999999999999997 Q ss_pred --hhhc--c-----cCccccchHHHHHHHHHHHHHHHHHhcCCcceeEccCCCeEEEEEcccccCCCEEEEEEEeccC-- Q lcl|NC_015569. 237 --NGGF--S-----NSGGMQFDLVSWYTMQEYLNTLNFLLRPPVVFNFNQRTHRLHIHSNTTLRLGDYLLMECSVKPS-- 305 (381) Q Consensus 237 --n~~~--~-----~~~~~g~~L~~y~~~~qY~~~l~~~l~~~~~f~fN~~t~rL~i~~d~~~~~gd~lviE~y~k~~-- 305 (381) ++++ + .++++|++|+||++++||+++|+++|+|.|+||||++++||++.+| ++++|+|++|+++|++ T Consensus 116 gi~g~~~~s~~~~~~pn~fg~dl~Y~~~l~sy~~m~qd~l~~~pd~~~N~~~~~l~i~gn--f~~~~~i~~e~~~k~y~d 193 (309) T protein:vir:71 116 GINGGMGTSCNRFYGPNAFGADLGYFTQLTSYMGMMQDMLSPIPDFWFNSANEQLKVMGN--FQKYDLIIVESWTKSYID 193 (309) T ss_pred hhhcccccccccccccchhhhhhHHHHHHHHHHHHHHHHhcccCCcccccccceEEEEEe--eeecceEEEEEeeccccc Confidence 2322 2 2478889999999999999999999999999999999999999997 7788999998887754 Q ss_pred -----------------------------------------CccccccccchHHHHHHHHHHHHHHhHHHHHhcCCcCCC Q lcl|NC_015569. 306 -----------------------------------------PDVYPDIWNDMWLKKYATALVKYQWGVNLTKHTDVKLPG 344 (381) Q Consensus 306 -----------------------------------------Pd~~~~vYNd~WlKdYATALvK~~wGqNL~KfqG~qLPG 344 (381) |++++++|||||||||||||+|++|||||+||||||||| T Consensus 194 ~~~~v~~~~g~~~~~~~d~~~~~~~y~~~~~~l~~~~r~~dp~~~~~~YNn~WvKdYaTAL~K~~wGqnL~K~qG~qLPG 273 (309) T protein:vir:71 194 TNKMVGNTVGYGTVGPQDSWSLSERYNNPDHNLVGRVVGQDPNVKQGAYNNRWVKDYATALAKELNGQILARHQGMMLPG 273 (309) T ss_pred cchhhhcchhhccccccccccceehhcccchhhhcceeccCCcchhhhcchhHHHHHHHHHHHHHHHHHHHHhCCccCCC Confidence 445588899999999999999999999999999999999 Q ss_pred ceeecHHHHHHHHHHHHHHHHHHHHhhcCCCceeeeC Q lcl|NC_015569. 345 GITLNGEMIYNEAKQEIAEIIQKFAMDWADPVLDLVG 381 (381) Q Consensus 345 GVTlnG~~I~~EA~~Eie~LeEeL~~~~~~Pp~~mmG 381 (381) ||||||+||++||++|+|+|||||++++ +|+.++|| T Consensus 274 GVTlnG~~i~eeA~~E~e~LreeL~~~~-pP~d~i~g 309 (309) T protein:vir:71 274 GVTIDGQRLIEEARLEKEALREELYLLD-PPFGILVG 309 (309) T ss_pred ceeecHHHHHHHHHHHHHHHHHHHhhcc-CCCcceeC Confidence 9999999999999999999999999987 68888999 No 7 >protein:vir:5657 Length: 307 # NCBI annotation: gp13 # Family: family:all:1103 # MgeID: mge:119 # MgeName: KVP40 # Cross-refs: genbank:acc:NP_899596;genbank:gi:34419583;genbank:GeneID:2545698 Probab=100.00 E-value=1.6e-117 Score=660.95 Aligned_cols=250 Identities=28% Similarity=0.482 Sum_probs=231.0 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEeecHHHHHHHHHHHHHHhhhccccCcccceeEEEEecccccCcceeeeeeecc Q lcl|NC_015569. 1 MSIASPQNRKEFKEYILHKLGKPVLEINVADEQIDLAINDAFQYFHEREHFNGTERVFYRLRVEQPLLDFFETARLQETA 80 (381) Q Consensus 1 m~~~~~~s~~~lkd~ilrrLGaPvl~inv~d~Qi~d~I~~al~~f~Ey~H~dG~~~~~~~~~~~~~d~~~f~~~~i~~~~ 80 (381) ||+++|+||+|||||||||||||||||||||+||+||||||||||||| ||||++|+|++|++|| T Consensus 1 m~~~~~~s~~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~Alqly~Ey-HydG~~k~y~~~~vte--------------- 64 (307) T protein:vir:56 1 MQAYNATSPREMKDLILRRLGAPIVNVEVSEDQVYDCISRALELYIEY-HPDGVNKTYSIISLSE--------------- 64 (307) T ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhh-hccccccceEEEEech--------------- Confidence 999999999999999999999999999999999999999999999999 9999999999999885 Q ss_pred cceeeeccceeeeeccccccccccccccccceeecccceecCCcceeEEeeEEEEecccEEeccceEEEEEeecccccee Q lcl|NC_015569. 81 QSAVPQVPGAGAVDQLTLVTPGTNYTPTTDGSETRSNQPTAPANSGVTGTGLTVNWGESRTVSGGLVSVSIYSAGEGYSV 160 (381) Q Consensus 81 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ny~~~p~~~~v~~v~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 160 (381) T Consensus 65 -------------------------------------------------------------------------------- 64 (307) T protein:vir:56 65 -------------------------------------------------------------------------------- 64 (307) T ss_pred -------------------------------------------------------------------------------- Confidence Q ss_pred cceeEEecCCCCcceeEcceeeeeEEeeecceeecCCeEEcCCCceeEEEEEEecCccccccCceeeehhhhhhhhh--- Q lcl|NC_015569. 161 GDQVIISGGNNDAVFQVTAVKDQTPLYGVEIVEQQRNWITLPDDVIGVTKVFKVGSSSNLMTGGVIPAAFFTNPFLN--- 237 (381) Q Consensus 161 ~~~~~~~~~~~~~eyhydg~~~~y~~~~~~~~~~~~nyi~Lpd~V~~VtkI~r~~~ss~~~~gg~a~~~~ft~~~ln--- 237 (381) ++.++|||++|++|++|++|+|.+ ++..+++|.++++||++|++. T Consensus 65 -------------------------------~~~~~G~~d~~~~v~avt~Iirt~-~s~~t~dg~aty~w~tdfi~~~~g 112 (307) T protein:vir:56 65 -------------------------------EQAQTGIIDLDIPATAITKILRAE-SSFFTMDGNATYSWFSDFLQGLAG 112 (307) T ss_pred -------------------------------hhccCCeEecCcchhhhhhhhccC-cccccCCCccccCccccceecccc Confidence 344578899999999999999998 888889999999999999972 Q ss_pred --hhcc-----cCccccchHHHHHHHHHHHHHHHHHhcCCcceeEccCCCeEEEEEcccccCCCEEEEEEEec------- Q lcl|NC_015569. 238 --GGFS-----NSGGMQFDLVSWYTMQEYLNTLNFLLRPPVVFNFNQRTHRLHIHSNTTLRLGDYLLMECSVK------- 303 (381) Q Consensus 238 --~~~~-----~~~~~g~~L~~y~~~~qY~~~l~~~l~~~~~f~fN~~t~rL~i~~d~~~~~gd~lviE~y~k------- 303 (381) ++.+ .+.+++++|++|++++||+++|+++|+|.|+||||++|+||++.++ +++||++++|||++ T Consensus 113 v~g~~~~~~~~~~~~~~~~l~y~~~~~sy~~~l~d~~~p~~d~~yn~~~~qL~~~~n--~~~g~~~ive~~~~s~~~~~~ 190 (307) T protein:vir:56 113 GPGAGSCNSYHQGMLGQGSLSDYWNLMSYKNMLTDLLSPEYDYWYNGVNKQLRINAN--LSAGELIVVEAFVPSALLVSE 190 (307) T ss_pred cccccceeeecccccchhhhhHHHHHHHHHHHHHhhcccccceeecCcceeeeeeee--eccCCeEEEEeeccchhhhhh Confidence 3322 2344457899999999999999999999999999999999999998 66899999999996 Q ss_pred --------------------------------------cCCccccc--cccchHHHHHHHHHHHHHHhHHHHHhcCCcCC Q lcl|NC_015569. 304 --------------------------------------PSPDVYPD--IWNDMWLKKYATALVKYQWGVNLTKHTDVKLP 343 (381) Q Consensus 304 --------------------------------------~~Pd~~~~--vYNd~WlKdYATALvK~~wGqNL~KfqG~qLP 343 (381) .+|+.+++ +|||||||||||||+|++|||||+|||||||| T Consensus 191 ~~~~~~~~~~~~~r~y~~~~~~~~~~n~~~~~~~~~~~~dp~~~t~~~~YNn~WvKdYaTALvK~~wGqnL~K~qG~qLP 270 (307) T protein:vir:56 191 SATGIIGNKAATIGSYEDTTAQERWDDPYSILRQNNTIGNPNQFAEQNAYSVRWVKDMATAMTKQMNGVILKKHQGLQLP 270 (307) T ss_pred hhhhhcceeeecCcccccCCchhhccCcceeeeccccccCCcccccccccchhHHHHHHHHHHHHHHHHHHHHhCCccCC Confidence 35767775 99999999999999999999999999999999 Q ss_pred CceeecHHHHHHHHHHHHHHHHHHHHhhcCCCceeeeC Q lcl|NC_015569. 344 GGITLNGEMIYNEAKQEIAEIIQKFAMDWADPVLDLVG 381 (381) Q Consensus 344 GGVTlnG~~I~~EA~~Eie~LeEeL~~~~~~Pp~~mmG 381 (381) |||||||+||++||++|+|||||||++ +++||++||| T Consensus 271 GGVTlnG~~i~eeA~~E~e~LreEl~~-~~~P~~~liG 307 (307) T protein:vir:56 271 GGITIDGKEIYDEATQEIERLREELMS-LTVPLGVFMG 307 (307) T ss_pred CceeecHHHHHHHHHHHHHHHHHHHhh-ccCCchhhcC Confidence 999999999999999999999999998 8999999999 No 8 >protein:vir:81013 Length: 310 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:1888 # MgeName: Phi1 # Cross-refs: genbank:acc:YP_001469493;genbank:gi:157311450;genbank:GeneID:5602275 Probab=100.00 E-value=3.2e-116 Score=653.74 Aligned_cols=251 Identities=31% Similarity=0.509 Sum_probs=233.2 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEeecHHHHHHHHHHHHHHhhhccccCcccceeEEEEecccccCcceeeeeeecc Q lcl|NC_015569. 1 MSIASPQNRKEFKEYILHKLGKPVLEINVADEQIDLAINDAFQYFHEREHFNGTERVFYRLRVEQPLLDFFETARLQETA 80 (381) Q Consensus 1 m~~~~~~s~~~lkd~ilrrLGaPvl~inv~d~Qi~d~I~~al~~f~Ey~H~dG~~~~~~~~~~~~~d~~~f~~~~i~~~~ 80 (381) ||+++|+||+|||||||||||||||||||||+|||||||||||||||| ||||++|+|++|++|+| T Consensus 1 m~~~~~~s~~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~Alely~Ey-HydG~~k~yl~~~ited-------------- 65 (310) T protein:vir:81 1 MSGYVTNNPRELKDAILRRLGAPVINVEVTEDQIYDCIQRALELYGEY-HFDGVNKGYKVFRVSAE-------------- 65 (310) T ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhh-cccccccceEEEEechh-------------- Confidence 999999999999999999999999999999999999999999999999 99999999999999952 Q ss_pred cceeeeccceeeeeccccccccccccccccceeecccceecCCcceeEEeeEEEEecccEEeccceEEEEEeecccccee Q lcl|NC_015569. 81 QSAVPQVPGAGAVDQLTLVTPGTNYTPTTDGSETRSNQPTAPANSGVTGTGLTVNWGESRTVSGGLVSVSIYSAGEGYSV 160 (381) Q Consensus 81 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ny~~~p~~~~v~~v~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 160 (381) T Consensus 66 -------------------------------------------------------------------------------- 65 (310) T protein:vir:81 66 -------------------------------------------------------------------------------- 65 (310) T ss_pred -------------------------------------------------------------------------------- Confidence Q ss_pred cceeEEecCCCCcceeEcceeeeeEEeeecceeecCCeEEcCC-CceeEEEEEEecCccccccCceeeehhhhhhhh--- Q lcl|NC_015569. 161 GDQVIISGGNNDAVFQVTAVKDQTPLYGVEIVEQQRNWITLPD-DVIGVTKVFKVGSSSNLMTGGVIPAAFFTNPFL--- 236 (381) Q Consensus 161 ~~~~~~~~~~~~~eyhydg~~~~y~~~~~~~~~~~~nyi~Lpd-~V~~VtkI~r~~~ss~~~~gg~a~~~~ft~~~l--- 236 (381) +.++|||++|| +|++||+|+|.++++..+++|.++|+||+++++ T Consensus 66 --------------------------------~~~~g~~d~~d~~v~avt~i~~t~~g~~~t~dg~a~Y~~~~d~v~Gi~ 113 (310) T protein:vir:81 66 --------------------------------QAQHGVFDLSDSGVFAVTKIIRTNVGSAATMDGTAVYPWFTDFLLGLA 113 (310) T ss_pred --------------------------------hhcCCeeeeCCcceeeeehhhhccccccccccccccccccCceeeeec Confidence 34678889987 799999999999999999999999999999997 Q ss_pred --hhhc--c-----cCccccchHHHHHHHHHHHHHHHHHhcCCcceeEccCCCeEEEEEcccccCCCEEEEEEEeccCCc Q lcl|NC_015569. 237 --NGGF--S-----NSGGMQFDLVSWYTMQEYLNTLNFLLRPPVVFNFNQRTHRLHIHSNTTLRLGDYLLMECSVKPSPD 307 (381) Q Consensus 237 --n~~~--~-----~~~~~g~~L~~y~~~~qY~~~l~~~l~~~~~f~fN~~t~rL~i~~d~~~~~gd~lviE~y~k~~Pd 307 (381) ++++ + .++++|++|++|++++||+.+++++|+|.|+||||++++||+|.+| |++||+|++|||+|+.+| T Consensus 114 ~v~g~~~~~~~~~~~~~~~g~~l~y~~~l~~y~~~~q~~ln~lpdy~yn~~~~ql~i~~n--f~~gd~ii~e~~~ks~le 191 (310) T protein:vir:81 114 GVNGGLGSGCSKFYGPNAMGGDLGYFEQLMSYRATMQNMLNPLPDYWYNSANGQLKITGN--FREGDLIVVELYVKSYVD 191 (310) T ss_pred cccccccchhhhhccccccchhhhhhhHHHHHHHHHHHHhCcccccccCCccceeeeeee--cccCcEEEEEEEeecccC Confidence 2332 1 2468899999999999999999999999999999999999999998 668999999999999866 Q ss_pred cc----------------------------------------------cccccchHHHHHHHHHHHHHHhHHHHHhcCCc Q lcl|NC_015569. 308 VY----------------------------------------------PDIWNDMWLKKYATALVKYQWGVNLTKHTDVK 341 (381) Q Consensus 308 ~~----------------------------------------------~~vYNd~WlKdYATALvK~~wGqNL~KfqG~q 341 (381) +. +++|||||||||||||+|++|||||+|||||| T Consensus 192 ~~d~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YNnrWvKdYaTAL~K~~wGqnL~K~qG~q 271 (310) T protein:vir:81 192 VPDMIGAVAGYAHAGGCSTAGGISAVYDNPTAGLSGIVAGMGPISENKQGAYNNRWVKDMATAFTKEVWGSIMAKHQGLQ 271 (310) T ss_pred chhhhhcccceeEEcccCCccccccccccchhhhceeeeecccCCCccccccchhHHHHHHHHHHHHHHHHHHHHhCCcc Confidence 43 45699999999999999999999999999999 Q ss_pred CCCceeecHHHHHHHHHHHHHHHHHHHHhhcCCCceeee Q lcl|NC_015569. 342 LPGGITLNGEMIYNEAKQEIAEIIQKFAMDWADPVLDLV 380 (381) Q Consensus 342 LPGGVTlnG~~I~~EA~~Eie~LeEeL~~~~~~Pp~~mm 380 (381) |||||||||+||++||++|+|+|||||+.+.++|+++|| T Consensus 272 LPGGVTlnG~~i~eeA~~E~e~LreEl~~~~pP~~i~~~ 310 (310) T protein:vir:81 272 LPGGVTVDGIRIIEEARADIEKLRQELELLDPPFGILMI 310 (310) T ss_pred CCCceeecHHHHHHHHHHHHHHHHHHHHhhCCCCCeeeC Confidence 999999999999999999999999999999888889999 No 9 >protein:vir:6589 Length: 310 # NCBI annotation: neck protein # Family: family:all:1103 # MgeID: mge:139 # MgeName: RB49 # Cross-refs: genbank:acc:NP_891720;genbank:gi:33620666;genbank:GeneID:1725419 Probab=100.00 E-value=3.2e-116 Score=653.74 Aligned_cols=251 Identities=31% Similarity=0.509 Sum_probs=233.2 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEeecHHHHHHHHHHHHHHhhhccccCcccceeEEEEecccccCcceeeeeeecc Q lcl|NC_015569. 1 MSIASPQNRKEFKEYILHKLGKPVLEINVADEQIDLAINDAFQYFHEREHFNGTERVFYRLRVEQPLLDFFETARLQETA 80 (381) Q Consensus 1 m~~~~~~s~~~lkd~ilrrLGaPvl~inv~d~Qi~d~I~~al~~f~Ey~H~dG~~~~~~~~~~~~~d~~~f~~~~i~~~~ 80 (381) ||+++|+||+|||||||||||||||||||||+|||||||||||||||| ||||++|+|++|++|+| T Consensus 1 m~~~~~~s~~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~Alely~Ey-HydG~~k~yl~~~ited-------------- 65 (310) T protein:vir:65 1 MSGYVTNNPRELKDAILRRLGAPVINVEVTEDQIYDCIQRALELYGEY-HFDGVNKGYKVFRVSAE-------------- 65 (310) T ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhh-cccccccceEEEEechh-------------- Confidence 999999999999999999999999999999999999999999999999 99999999999999952 Q ss_pred cceeeeccceeeeeccccccccccccccccceeecccceecCCcceeEEeeEEEEecccEEeccceEEEEEeecccccee Q lcl|NC_015569. 81 QSAVPQVPGAGAVDQLTLVTPGTNYTPTTDGSETRSNQPTAPANSGVTGTGLTVNWGESRTVSGGLVSVSIYSAGEGYSV 160 (381) Q Consensus 81 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ny~~~p~~~~v~~v~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 160 (381) T Consensus 66 -------------------------------------------------------------------------------- 65 (310) T protein:vir:65 66 -------------------------------------------------------------------------------- 65 (310) T ss_pred -------------------------------------------------------------------------------- Confidence Q ss_pred cceeEEecCCCCcceeEcceeeeeEEeeecceeecCCeEEcCC-CceeEEEEEEecCccccccCceeeehhhhhhhh--- Q lcl|NC_015569. 161 GDQVIISGGNNDAVFQVTAVKDQTPLYGVEIVEQQRNWITLPD-DVIGVTKVFKVGSSSNLMTGGVIPAAFFTNPFL--- 236 (381) Q Consensus 161 ~~~~~~~~~~~~~eyhydg~~~~y~~~~~~~~~~~~nyi~Lpd-~V~~VtkI~r~~~ss~~~~gg~a~~~~ft~~~l--- 236 (381) +.++|||++|| +|++||+|+|.++++..+++|.++|+||+++++ T Consensus 66 --------------------------------~~~~g~~d~~d~~v~avt~i~~t~~g~~~t~dg~a~Y~~~~d~v~Gi~ 113 (310) T protein:vir:65 66 --------------------------------QAQHGVFDLSDSGVFAVTKIIRTNVGSAATMDGTAVYPWFTDFLLGLA 113 (310) T ss_pred --------------------------------hhcCCeeeeCCcceeeeehhhhccccccccccccccccccCceeeeec Confidence 34678889987 799999999999999999999999999999997 Q ss_pred --hhhc--c-----cCccccchHHHHHHHHHHHHHHHHHhcCCcceeEccCCCeEEEEEcccccCCCEEEEEEEeccCCc Q lcl|NC_015569. 237 --NGGF--S-----NSGGMQFDLVSWYTMQEYLNTLNFLLRPPVVFNFNQRTHRLHIHSNTTLRLGDYLLMECSVKPSPD 307 (381) Q Consensus 237 --n~~~--~-----~~~~~g~~L~~y~~~~qY~~~l~~~l~~~~~f~fN~~t~rL~i~~d~~~~~gd~lviE~y~k~~Pd 307 (381) ++++ + .++++|++|++|++++||+.+++++|+|.|+||||++++||+|.+| |++||+|++|||+|+.+| T Consensus 114 ~v~g~~~~~~~~~~~~~~~g~~l~y~~~l~~y~~~~q~~ln~lpdy~yn~~~~ql~i~~n--f~~gd~ii~e~~~ks~le 191 (310) T protein:vir:65 114 GVNGGLGSGCSKFYGPNAMGGDLGYFEQLMSYRATMQNMLNPLPDYWYNSANGQLKITGN--FREGDLIVVELYVKSYVD 191 (310) T ss_pred cccccccchhhhhccccccchhhhhhhHHHHHHHHHHHHhCcccccccCCccceeeeeee--cccCcEEEEEEEeecccC Confidence 2332 1 2468899999999999999999999999999999999999999998 668999999999999866 Q ss_pred cc----------------------------------------------cccccchHHHHHHHHHHHHHHhHHHHHhcCCc Q lcl|NC_015569. 308 VY----------------------------------------------PDIWNDMWLKKYATALVKYQWGVNLTKHTDVK 341 (381) Q Consensus 308 ~~----------------------------------------------~~vYNd~WlKdYATALvK~~wGqNL~KfqG~q 341 (381) +. +++|||||||||||||+|++|||||+|||||| T Consensus 192 ~~d~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YNnrWvKdYaTAL~K~~wGqnL~K~qG~q 271 (310) T protein:vir:65 192 VPDMIGAVAGYAHAGGCSTAGGISAVYDNPTAGLSGIVAGMGPISENKQGAYNNRWVKDMATAFTKEVWGSIMAKHQGLQ 271 (310) T ss_pred chhhhhcccceeEEcccCCccccccccccchhhhceeeeecccCCCccccccchhHHHHHHHHHHHHHHHHHHHHhCCcc Confidence 43 45699999999999999999999999999999 Q ss_pred CCCceeecHHHHHHHHHHHHHHHHHHHHhhcCCCceeee Q lcl|NC_015569. 342 LPGGITLNGEMIYNEAKQEIAEIIQKFAMDWADPVLDLV 380 (381) Q Consensus 342 LPGGVTlnG~~I~~EA~~Eie~LeEeL~~~~~~Pp~~mm 380 (381) |||||||||+||++||++|+|+|||||+.+.++|+++|| T Consensus 272 LPGGVTlnG~~i~eeA~~E~e~LreEl~~~~pP~~i~~~ 310 (310) T protein:vir:65 272 LPGGVTVDGIRIIEEARADIEKLRQELELLDPPFGILMI 310 (310) T ss_pred CCCceeecHHHHHHHHHHHHHHHHHHHHhhCCCCCeeeC Confidence 999999999999999999999999999999888889999 No 10 >protein:vir:6889 Length: 308 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:140 # MgeName: RB69 # Cross-refs: genbank:acc:NP_861865;genbank:gi:32453656;genbank:GeneID:1494291 Probab=100.00 E-value=2.9e-116 Score=653.97 Aligned_cols=252 Identities=29% Similarity=0.472 Sum_probs=232.4 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEeecHHHHHHHHHHHHHHhhhccccCcccceeEEEEecccccCcceeeeeeecc Q lcl|NC_015569. 1 MSIASPQNRKEFKEYILHKLGKPVLEINVADEQIDLAINDAFQYFHEREHFNGTERVFYRLRVEQPLLDFFETARLQETA 80 (381) Q Consensus 1 m~~~~~~s~~~lkd~ilrrLGaPvl~inv~d~Qi~d~I~~al~~f~Ey~H~dG~~~~~~~~~~~~~d~~~f~~~~i~~~~ 80 (381) ||+++|+||+|||||||||||||||||||||+|||||||||||||||| ||||++|+|++|++|+| T Consensus 1 m~~~~~~s~~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~Alely~Ey-HydG~~k~y~~~~i~~d-------------- 65 (308) T protein:vir:68 1 MSGYNAQNPKELKDVILRRLGAPIVNVELTTDQIYDCISRALELYGEY-HFDGLNKGFHVFFVDDE-------------- 65 (308) T ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhh-hccccccceEEEEeChh-------------- Confidence 999999999999999999999999999999999999999999999999 99999999999999953 Q ss_pred cceeeeccceeeeeccccccccccccccccceeecccceecCCcceeEEeeEEEEecccEEeccceEEEEEeecccccee Q lcl|NC_015569. 81 QSAVPQVPGAGAVDQLTLVTPGTNYTPTTDGSETRSNQPTAPANSGVTGTGLTVNWGESRTVSGGLVSVSIYSAGEGYSV 160 (381) Q Consensus 81 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ny~~~p~~~~v~~v~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 160 (381) T Consensus 66 -------------------------------------------------------------------------------- 65 (308) T protein:vir:68 66 -------------------------------------------------------------------------------- 65 (308) T ss_pred -------------------------------------------------------------------------------- Confidence Q ss_pred cceeEEecCCCCcceeEcceeeeeEEeeecceeecCCeEEcCC-CceeEEEEEEecCccccccCceeeehhhhhhhhh-- Q lcl|NC_015569. 161 GDQVIISGGNNDAVFQVTAVKDQTPLYGVEIVEQQRNWITLPD-DVIGVTKVFKVGSSSNLMTGGVIPAAFFTNPFLN-- 237 (381) Q Consensus 161 ~~~~~~~~~~~~~eyhydg~~~~y~~~~~~~~~~~~nyi~Lpd-~V~~VtkI~r~~~ss~~~~gg~a~~~~ft~~~ln-- 237 (381) ++.++|+|+||| +|++||+|+|.++++..++++.++|+||++|++. T Consensus 66 -------------------------------~~~k~g~f~~~d~~v~avT~i~rt~~gs~~t~dg~a~Y~~~~dfv~g~~ 114 (308) T protein:vir:68 66 -------------------------------EKYRHGVFDMRGSNVFAVTRIIRTNVGSITSMDGNATYPWFTDFLLGMA 114 (308) T ss_pred -------------------------------hhhccceeecCCccchhhhhhhhccccccccccccccccccCceeeeec Confidence 234677888986 8999999999999999999999999999999873 Q ss_pred ---hhc-------ccCccccchHHHHHHHHHHHHHHHHHhcCCcceeEccCCCeEEEEEcccccCCCEEEEEEEecc--- Q lcl|NC_015569. 238 ---GGF-------SNSGGMQFDLVSWYTMQEYLNTLNFLLRPPVVFNFNQRTHRLHIHSNTTLRLGDYLLMECSVKP--- 304 (381) Q Consensus 238 ---~~~-------~~~~~~g~~L~~y~~~~qY~~~l~~~l~~~~~f~fN~~t~rL~i~~d~~~~~gd~lviE~y~k~--- 304 (381) ++. ..++++|++|++|++++||+++|++||+|.|+||||+++++|+|.+| ++++|++++|+++|+ T Consensus 115 g~~g~~~~~~~~~~g~n~~g~~lgy~~~~~~Y~~~l~dl~~p~~~~~~n~~~~ql~i~~n--~~~~d~~i~e~~~ks~le 192 (308) T protein:vir:68 115 GVSGGMGSNCGKFYGPNAFGADLGYYSQLVSYMGMLQDMIAPLPDFWFNSANEQLKVMGN--FRQKDVIIVESYVRSYIE 192 (308) T ss_pred ccCcccccccchhcccccccchhhhHHHHHHHHHHHHHhcccccccccCCcceeEEEeee--eccCceEEEEEeeecccc Confidence 321 13577889999999999999999999999999999999999999998 557888888777774 Q ss_pred ----------------------------------------CCccccccccchHHHHHHHHHHHHHHhHHHHHhcCCcCCC Q lcl|NC_015569. 305 ----------------------------------------SPDVYPDIWNDMWLKKYATALVKYQWGVNLTKHTDVKLPG 344 (381) Q Consensus 305 ----------------------------------------~Pd~~~~vYNd~WlKdYATALvK~~wGqNL~KfqG~qLPG 344 (381) +|++++++|||||||||||||+|++|||||+||||||||| T Consensus 193 ~~~~v~n~~~y~~~~~rl~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~YNnrWvKdYaTAL~K~~wGqnL~K~qG~qLPG 272 (308) T protein:vir:68 193 THKMVGNTVGYGQVGPRDSWSISERYDNPDHNLVGRRVGEDPATKQGAYNNRWVKDYASALAKELNGQILAKHQGMMLPG 272 (308) T ss_pred cchhhccceeeeeecccccCccccccccchhhheeeeeccCCCccccccchhHHHHHHHHHHHHHHHHHHHHhCCccCCC Confidence 5666788899999999999999999999999999999999 Q ss_pred ceeecHHHHHHHHHHHHHHHHHHHHhhcCCCceeeeC Q lcl|NC_015569. 345 GITLNGEMIYNEAKQEIAEIIQKFAMDWADPVLDLVG 381 (381) Q Consensus 345 GVTlnG~~I~~EA~~Eie~LeEeL~~~~~~Pp~~mmG 381 (381) ||||||+||++||++|+|+|||||++++ +|+.++|| T Consensus 273 GvTlnG~~i~eeA~~E~e~LreEl~~~~-pP~~~i~g 308 (308) T protein:vir:68 273 GVTVDGVRLIEEARLEKEALREELYLLD-PPAGILVG 308 (308) T ss_pred ceeecHHHHHHHHHHHHHHHHHHHhhcc-CCCceeeC Confidence 9999999999999999999999999988 78888999 No 11 >protein:vir:104585 Length: 268 # NCBI annotation: gp13 # Family: family:all:1103 # MgeID: mge:1548 # MgeName: P-SSM4 # Cross-refs: genbank:acc:YP_214649;genbank:gi:61806290;genbank:GeneID:3294640 Probab=100.00 E-value=8.8e-118 Score=662.33 Aligned_cols=265 Identities=30% Similarity=0.622 Sum_probs=241.6 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEeecHHHHHHHHHHHHHHhhhccccCcccceeEEEEecccccCcceeeeeeecc Q lcl|NC_015569. 1 MSIASPQNRKEFKEYILHKLGKPVLEINVADEQIDLAINDAFQYFHEREHFNGTERVFYRLRVEQPLLDFFETARLQETA 80 (381) Q Consensus 1 m~~~~~~s~~~lkd~ilrrLGaPvl~inv~d~Qi~d~I~~al~~f~Ey~H~dG~~~~~~~~~~~~~d~~~f~~~~i~~~~ 80 (381) ||+|+|+||+|||||||||||||||||||||+||+||||||||||||| ||||++|+|++|++|+++ |++ T Consensus 1 m~~~~~~s~~eLkdyiLRrLGaPii~InVtd~Qi~DcId~Alely~Ey-HydG~~k~y~~f~vT~~~----------rt~ 69 (268) T protein:vir:10 1 MSATRPASKTELKDYALRRLGFPTIDINVATEQLDDLVEEAIDYYQEY-HYNGSFQTFMRIEVTEAI----------KTQ 69 (268) T ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhh-cccccccceEEEEechHH----------hhc Confidence 999999999999999999999999999999999999999999999999 999999999998887655 455 Q ss_pred cceeeeccceeeeeccccccccccccccccceeecccceecCCcceeEEeeEEEEecccEEeccceEEEEEeecccccee Q lcl|NC_015569. 81 QSAVPQVPGAGAVDQLTLVTPGTNYTPTTDGSETRSNQPTAPANSGVTGTGLTVNWGESRTVSGGLVSVSIYSAGEGYSV 160 (381) Q Consensus 81 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ny~~~p~~~~v~~v~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 160 (381) .+++ +|+|+ .+|+ T Consensus 70 ~~~~-t~~~t-------------------~~~~----------------------------------------------- 82 (268) T protein:vir:10 70 AKGF-TQEGS-------------------TPWY----------------------------------------------- 82 (268) T ss_pred cccc-ccccc-------------------cccc----------------------------------------------- Confidence 4444 33332 2233 Q ss_pred cceeEEecCCCCcceeEcceeeeeEEeeecceeecCCeEEcCCCceeEEEEEEecCccccccCceeeehhhhhhhhhhhc Q lcl|NC_015569. 161 GDQVIISGGNNDAVFQVTAVKDQTPLYGVEIVEQQRNWITLPDDVIGVTKVFKVGSSSNLMTGGVIPAAFFTNPFLNGGF 240 (381) Q Consensus 161 ~~~~~~~~~~~~~eyhydg~~~~y~~~~~~~~~~~~nyi~Lpd~V~~VtkI~r~~~ss~~~~gg~a~~~~ft~~~ln~~~ 240 (381) ++++||.+||+|++|++||..-+++..+++++|+..| |+++|+.+ T Consensus 83 ---------------------------------~~~nyi~~p~~~~Gv~~vf~~~~~~~~~~~nm~~~~~--q~~lnd~~ 127 (268) T protein:vir:10 83 ---------------------------------GQDNYVSTPPGTLGINHVYTNIGASSIVPGNIFNIKY--QIFLNDIY 127 (268) T ss_pred ---------------------------------CCCcceecCccccchhhhhccccccccccchhhcccc--hhhccccc Confidence 3345556899999999999887788888999999999 99999998 Q ss_pred ccCccccchHHHHHHHHHHHHHHHHHhcC--CcceeEccCCCeEEEEEccc-ccCCCEEEEEEEeccCCccccccccchH Q lcl|NC_015569. 241 SNSGGMQFDLVSWYTMQEYLNTLNFLLRP--PVVFNFNQRTHRLHIHSNTT-LRLGDYLLMECSVKPSPDVYPDIWNDMW 317 (381) Q Consensus 241 ~~~~~~g~~L~~y~~~~qY~~~l~~~l~~--~~~f~fN~~t~rL~i~~d~~-~~~gd~lviE~y~k~~Pd~~~~vYNd~W 317 (381) ++.+ .+|+.|++.+||+++++.+++. .++++||++++||+++.+|. ..++++++++|++..+|++++++||||| T Consensus 128 ~~~~---~~i~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~l~~~~~~~dp~~~~~~YNn~W 204 (268) T protein:vir:10 128 SMTH---GQILHYFLTSQYLETLDFVTNSQANRRVKWNEHSNRLYLDFDWDDLTVGDYIMVDMTMRQDPTTFTDMFNDNW 204 (268) T ss_pred cccc---eeEEEEEEeeeeecchhhhhccCCCcceeeecccCceeeeeeccCcccchhhhhhhhhccCCcccchhhhhhH Confidence 7664 5999999999999999999996 47899999999999999995 6689999999999999999999999999 Q ss_pred HHHHHHHHHHHHHhHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHHhhcCCCceeeeC Q lcl|NC_015569. 318 LKKYATALVKYQWGVNLTKHTDVKLPGGITLNGEMIYNEAKQEIAEIIQKFAMDWADPVLDLVG 381 (381) Q Consensus 318 lKdYATALvK~~wGqNL~KfqG~qLPGGVTlnG~~I~~EA~~Eie~LeEeL~~~~~~Pp~~mmG 381 (381) ||||||||+|++|||||+|||||||||||||||+||++||++|+|+|||||++++++||++||| T Consensus 205 vKdYaTAL~K~~wGq~L~K~qG~qLPGGvTvnG~~i~eea~~E~e~L~eel~~~~~~Pp~~liG 268 (268) T protein:vir:10 205 LKDYVEALFQQQWGRNLSKYDGIQMLGGVTLNGRQILEDASKFKEDLEKDIRDRYEIPPLDLIG 268 (268) T ss_pred HHHHHHHHHHHHHHHHHHHhcCccCCCceeecHHHHHHHHHHHHHHHHHHHHhhcCCCcccccC Confidence 9999999999999999999999999999999999999999999999999999999999999999 No 12 >protein:vir:98189 Length: 307 # NCBI annotation: gp13 head completion # Family: family:all:1103 # MgeID: mge:1667 # MgeName: RB43 # Cross-refs: genbank:acc:YP_239190;genbank:gi:66391665;genbank:GeneID:3416291 Probab=100.00 E-value=4.4e-115 Score=647.52 Aligned_cols=250 Identities=24% Similarity=0.393 Sum_probs=227.4 Q ss_pred CCCCCCHHHHHHHHHHhcCCceEEEeecHHHHHHHHHHHHHHhhhccccCcccceeEEEEeccccc---------Cccee Q lcl|NC_015569. 3 IASPQNRKEFKEYILHKLGKPVLEINVADEQIDLAINDAFQYFHEREHFNGTERVFYRLRVEQPLL---------DFFET 73 (381) Q Consensus 3 ~~~~~s~~~lkd~ilrrLGaPvl~inv~d~Qi~d~I~~al~~f~Ey~H~dG~~~~~~~~~~~~~d~---------~~f~~ 73 (381) |++ +||+|||||||||||||||||||||+|||||||||||||||| ||||++|+|++|++||||+ ++|+| T Consensus 1 m~t-~s~~eLKdyiLRrLGAPvi~InVtd~Qi~DcId~ALqly~Ey-HydG~~k~y~~~~i~~d~~~~~~~~~~~~v~aV 78 (307) T protein:vir:98 1 MIT-NNPEQLKDEILRRLGAPIIKIEITQDQIYDCIQRALDLYAEY-HYNGTNKSYIILTLGEDNPRNVFDLSKEHIFAV 78 (307) T ss_pred CCc-CCHHHHHHHHHHhcCCceeEEecCHHHHHHHHHHHHHHHHhh-hcccccceeEEEEecccccccceecCCchHhHH Confidence 666 999999999999999999999999999999999999999999 9999999999999999987 57999 Q ss_pred eeeeecccceeeeccceeeeeccccccccccccccccceeecccceecCCcceeEEeeEEEEecccEEeccceEEEEEee Q lcl|NC_015569. 74 ARLQETAQSAVPQVPGAGAVDQLTLVTPGTNYTPTTDGSETRSNQPTAPANSGVTGTGLTVNWGESRTVSGGLVSVSIYS 153 (381) Q Consensus 74 ~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ny~~~p~~~~v~~v~~~~~~~~~~~~~~~~f~~~~~~ 153 (381) |+|+|++.|++.+|||+|||+|++||++|++++++.. | T Consensus 79 T~iirt~~g~~~s~dg~aty~w~~d~~~g~~~~~~g~----------------------------------~-------- 116 (307) T protein:vir:98 79 TKVLRTNIGSLVSMDGTAVYPWFTDFLMGLTGGSLGG----------------------------------R-------- 116 (307) T ss_pred HHHhhcCccceecccccccccccCcceeecCCccccc----------------------------------c-------- Confidence 9999999999999999999999999998887752211 0 Q ss_pred ccccceecceeEEecCCCCcceeEcceeeeeEEeeecceeecCCeEEcCCCceeEEEEEEecCccccccCceeeehhhhh Q lcl|NC_015569. 154 AGEGYSVGDQVIISGGNNDAVFQVTAVKDQTPLYGVEIVEQQRNWITLPDDVIGVTKVFKVGSSSNLMTGGVIPAAFFTN 233 (381) Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~eyhydg~~~~y~~~~~~~~~~~~nyi~Lpd~V~~VtkI~r~~~ss~~~~gg~a~~~~ft~ 233 (381) | ..+++ T Consensus 117 ----------------------~-------------------------------~s~~~--------------------- 122 (307) T protein:vir:98 117 ----------------------C-------------------------------ASSVY--------------------- 122 (307) T ss_pred ----------------------c-------------------------------cccee--------------------- Confidence 0 01121 Q ss_pred hhhhhhcccCccccchHHHHHHHHHHHHHHHHHhcCCcceeEccCCCeEEEEEcccccCCCEEEEEEEeccCCcc----- Q lcl|NC_015569. 234 PFLNGGFSNSGGMQFDLVSWYTMQEYLNTLNFLLRPPVVFNFNQRTHRLHIHSNTTLRLGDYLLMECSVKPSPDV----- 308 (381) Q Consensus 234 ~~ln~~~~~~~~~g~~L~~y~~~~qY~~~l~~~l~~~~~f~fN~~t~rL~i~~d~~~~~gd~lviE~y~k~~Pd~----- 308 (381) ..+++|++|++|++++||+++|++||+|.|+||||++++||++.+| +++||+|++||++|+.+|+ T Consensus 123 --------g~n~~g~~l~yf~q~~~Y~~~l~dl~~p~~dy~yn~~~~~l~~~gn--~~~~d~i~~e~~~ks~ld~~~~i~ 192 (307) T protein:vir:98 123 --------GMNAYGADLGYFTQMMSYQRSMQELLAPLPDYWYNDDTGQFCVWGK--VNNGDIIVIEVMVRSFVDVPSAVG 192 (307) T ss_pred --------cCccccchHHHHHHHHHHHHHHHHhhccccceeecCcccceeeeec--cccCceEEEEEeecccccchHHhc Confidence 2345567999999999999999999999999999999999999998 7799999999999987653 Q ss_pred -------------------------------------------ccccccchHHHHHHHHHHHHHHhHHHHHhcCCcCCCc Q lcl|NC_015569. 309 -------------------------------------------YPDIWNDMWLKKYATALVKYQWGVNLTKHTDVKLPGG 345 (381) Q Consensus 309 -------------------------------------------~~~vYNd~WlKdYATALvK~~wGqNL~KfqG~qLPGG 345 (381) .+.+|||||||||||||+|++|||||+|||||||||| T Consensus 193 ~~~~y~~~~~~~~~d~~~~d~~~n~y~~~~~~yra~~~~~~~~~t~aYNnrWvKdYaTALvK~~wGq~L~K~qG~qLPGG 272 (307) T protein:vir:98 193 SVAGYATAGSNAVEDQSIADIYDNPYNAVVGGVRAGQGTTVTGGTSAYNNRWVKDYSTALVKEINGQILAKFQGMQLPGG 272 (307) T ss_pred ccccceeecccccccccchhhccchhhhhhcceeecCCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcCccCCCc Confidence 1347999999999999999999999999999999999 Q ss_pred eeecHHHHHHHHHHHHHHHHHHHHhhcCCCceeee Q lcl|NC_015569. 346 ITLNGEMIYNEAKQEIAEIIQKFAMDWADPVLDLV 380 (381) Q Consensus 346 VTlnG~~I~~EA~~Eie~LeEeL~~~~~~Pp~~mm 380 (381) |||||+|||+||++|+|+|||||+++|++||++|| T Consensus 273 VTlnG~~i~eeA~~E~e~LreEl~~~~~~ppi~mi 307 (307) T protein:vir:98 273 VAPDGTRLIQEAETKLQGLRDELISMSDAVPIIMV 307 (307) T ss_pred eeecHHHHHHHHHHHHHHHHHHHhhcCCCCccccC Confidence 99999999999999999999999999999999999 No 13 >protein:vir:106985 Length: 276 # NCBI annotation: neck protein gp13 # Family: family:all:1103 # MgeID: mge:1459 # MgeName: S-PM2 # Cross-refs: genbank:acc:YP_195127;genbank:gi:58532904;uniprot:Q5GQW0;genbank:GeneID:3260482 Probab=100.00 E-value=2.3e-116 Score=654.53 Aligned_cols=268 Identities=32% Similarity=0.560 Sum_probs=226.3 Q ss_pred CCCCCCHHHHHHHHHHhcCCceEEEeecHHHHHHHHHHHHHHhhhccccCcccceeEEEEecccccCcceeeeeeecccc Q lcl|NC_015569. 3 IASPQNRKEFKEYILHKLGKPVLEINVADEQIDLAINDAFQYFHEREHFNGTERVFYRLRVEQPLLDFFETARLQETAQS 82 (381) Q Consensus 3 ~~~~~s~~~lkd~ilrrLGaPvl~inv~d~Qi~d~I~~al~~f~Ey~H~dG~~~~~~~~~~~~~d~~~f~~~~i~~~~~~ 82 (381) ||+|+||+|||||||||||||||||||||+|||||||||||||||| ||||++|+|++|++|+||+.++.+ .+++++.| T Consensus 1 ma~p~s~~eLkdyiLRrLGaPii~InVtd~Qi~DcId~Alely~Ey-HydG~~k~y~~~~i~~dd~~~~~~-~~~~~~~~ 78 (276) T protein:vir:10 1 MAKPSSKQELIDYCKRQLGAPVLQINTDSAQDDDIIDQAIQYYHEY-HFDGIERMYLKHQFTADDVTRFTS-SDQLTTAP 78 (276) T ss_pred CCCCCCHHHHHHHHHHhcCCceEEEEcCHHHHHHHHHHHHHHhhhh-cccccccceEEEEechHHhhhhhh-hhhccccc Confidence 9999999999999999999999999999999999999999999999 999999999999999999999653 35666666 Q ss_pred eeeeccceeeeeccccccccccccccccceeecccceecCCcceeEEeeEEEEecccEEeccceEEEEEeeccccceecc Q lcl|NC_015569. 83 AVPQVPGAGAVDQLTLVTPGTNYTPTTDGSETRSNQPTAPANSGVTGTGLTVNWGESRTVSGGLVSVSIYSAGEGYSVGD 162 (381) Q Consensus 83 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ny~~~p~~~~v~~v~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 162 (381) ++.+|+|+++|+||+||+.|+++..+ +.|+++++|||++ T Consensus 79 s~~~~~g~~~Y~~~pd~v~gi~~v~~----------------------------g~s~~~g~n~f~~------------- 117 (276) T protein:vir:10 79 NNDDWENRNNYIQVPDAVIGISKVFG----------------------------VSSNFLRNNLFGL------------- 117 (276) T ss_pred ceeeeeccCcceecCcchhhhhhhcc----------------------------cCccccCCccccc------------- Confidence 66565555555555554444433311 1233444444443 Q ss_pred eeEEecCCCCcceeEcceeeeeEEeeecceeecCCeEEcCCCceeEEEEEEecCccccccCceeeehhhhhhhhhhhccc Q lcl|NC_015569. 163 QVIISGGNNDAVFQVTAVKDQTPLYGVEIVEQQRNWITLPDDVIGVTKVFKVGSSSNLMTGGVIPAAFFTNPFLNGGFSN 242 (381) Q Consensus 163 ~~~~~~~~~~~eyhydg~~~~y~~~~~~~~~~~~nyi~Lpd~V~~VtkI~r~~~ss~~~~gg~a~~~~ft~~~ln~~~~~ 242 (381) ++ |.+||+.++. T Consensus 118 ------------------------------------------------------------------~~--q~fl~d~~~~ 129 (276) T protein:vir:10 118 ------------------------------------------------------------------SN--QYYLMDLFSF 129 (276) T ss_pred ------------------------------------------------------------------cH--HHHHHHHhcc Confidence 33 3334444433 Q ss_pred Cccc-----cchHHHHHHHHHHHHHHHHHhcCCc--ceeEccCCCeEEEEEcc-cccCCCEEEEEEEeccCCcccccccc Q lcl|NC_015569. 243 SGGM-----QFDLVSWYTMQEYLNTLNFLLRPPV--VFNFNQRTHRLHIHSNT-TLRLGDYLLMECSVKPSPDVYPDIWN 314 (381) Q Consensus 243 ~~~~-----g~~L~~y~~~~qY~~~l~~~l~~~~--~f~fN~~t~rL~i~~d~-~~~~gd~lviE~y~k~~Pd~~~~vYN 314 (381) +.++ .+++++|.+++||.++++.+++... .|+||++++||+++.+| ....|.+++++|||..+|+.++++|| T Consensus 130 ~~~ql~~~g~~~~~dy~~ve~~~~~id~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~dP~~~~~~YN 209 (276) T protein:vir:10 130 STGSAFSFGNFDLTNYYMIKQHFETIDMIINTGSLIEYRFNKRQDRLYIDIDTSRIVEDQYLLIDCYRYLNPDDFTQVYD 209 (276) T ss_pred cccceeeccceeeeeEEEEEEEecccceeecCCceeEEeeeccCCccccccccccccCCHHHHhhcccccCCcccccccc Confidence 3222 3689999999999999999998775 66889999999999988 56789999999999999999999999 Q ss_pred chHHHHHHHHHHHHHHhHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHHhhcCCCceeeeC Q lcl|NC_015569. 315 DMWLKKYATALVKYQWGVNLTKHTDVKLPGGITLNGEMIYNEAKQEIAEIIQKFAMDWADPVLDLVG 381 (381) Q Consensus 315 d~WlKdYATALvK~~wGqNL~KfqG~qLPGGVTlnG~~I~~EA~~Eie~LeEeL~~~~~~Pp~~mmG 381 (381) |||||||||||+|++|||||+|||||||||||||||+||++||++|+|+|||||+++|++||++||| T Consensus 210 n~WvKdYaTAL~K~~wGq~L~K~qG~qLPGGvTvnG~~i~eeA~~E~e~L~eel~~~~~~Pp~~miG 276 (276) T protein:vir:10 210 DSFVKRYATALLKRQWGQNLIKYNSVQLPGGITLNGRQIWEDGNNEVRELESRMMTDYSLPPMDMIG 276 (276) T ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeeCHHHHHHHHHHHHHHHHHHHHhhcCCCceeecC Confidence 9999999999999999999999999999999999999999999999999999999999999999999 No 14 >protein:vir:101153 Length: 307 # NCBI annotation: neck protein # Family: family:all:1103 # MgeID: mge:1582 # MgeName: 44RR2.8t # Cross-refs: genbank:acc:NP_932504;genbank:gi:37651630;genbank:GeneID:2610646 Probab=100.00 E-value=4.9e-114 Score=641.79 Aligned_cols=250 Identities=26% Similarity=0.448 Sum_probs=230.3 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEeecHHHHHHHHHHHHHHhhhccccCcccceeEEEEecccccCcceeeeeeecc Q lcl|NC_015569. 1 MSIASPQNRKEFKEYILHKLGKPVLEINVADEQIDLAINDAFQYFHEREHFNGTERVFYRLRVEQPLLDFFETARLQETA 80 (381) Q Consensus 1 m~~~~~~s~~~lkd~ilrrLGaPvl~inv~d~Qi~d~I~~al~~f~Ey~H~dG~~~~~~~~~~~~~d~~~f~~~~i~~~~ 80 (381) |+ ++|+||+|||||||||||||||+||||||||+||||||||||||| ||||++|+|++|++|| T Consensus 1 m~-~~~~s~~eLkdyiLRrLGAPii~InVtd~Qi~DcId~Alely~Ey-HydG~~k~y~~~~ite--------------- 63 (307) T protein:vir:10 1 MS-YTCNNPLELKDAILRRLGAPIVHVEVTEEQVFDCISRALELYGEY-HYDGFHRTYATVVLTE--------------- 63 (307) T ss_pred CC-CCCCCHHHHHHHHHHhcCCceEEEEcCHHHHHHHHHHHHHHhhhh-cccccccceEEEEech--------------- Confidence 98 779999999999999999999999999999999999999999999 9999999999999885 Q ss_pred cceeeeccceeeeeccccccccccccccccceeecccceecCCcceeEEeeEEEEecccEEeccceEEEEEeecccccee Q lcl|NC_015569. 81 QSAVPQVPGAGAVDQLTLVTPGTNYTPTTDGSETRSNQPTAPANSGVTGTGLTVNWGESRTVSGGLVSVSIYSAGEGYSV 160 (381) Q Consensus 81 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ny~~~p~~~~v~~v~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 160 (381) T Consensus 64 -------------------------------------------------------------------------------- 63 (307) T protein:vir:10 64 -------------------------------------------------------------------------------- 63 (307) T ss_pred -------------------------------------------------------------------------------- Confidence Q ss_pred cceeEEecCCCCcceeEcceeeeeEEeeecceeecCCeEEcCC-CceeEEEEEEecCccccccCceeeehhhhhhhhh-- Q lcl|NC_015569. 161 GDQVIISGGNNDAVFQVTAVKDQTPLYGVEIVEQQRNWITLPD-DVIGVTKVFKVGSSSNLMTGGVIPAAFFTNPFLN-- 237 (381) Q Consensus 161 ~~~~~~~~~~~~~eyhydg~~~~y~~~~~~~~~~~~nyi~Lpd-~V~~VtkI~r~~~ss~~~~gg~a~~~~ft~~~ln-- 237 (381) ++.++|||+||| +|++||+|+|.++++..+++|.++|+||+++++. T Consensus 64 -------------------------------~~~~~g~~d~~d~~v~avt~iirt~~~~~~t~dG~a~y~w~~d~~~g~~ 112 (307) T protein:vir:10 64 -------------------------------QQAKTGIIDMKGGNVFAVTQVLRTNVGSIITMDGTAVYPWFTDFVMGMT 112 (307) T ss_pred -------------------------------hhccCCEEecCCcchhhhhhhhhhccccccccCcccccccccccceeec Confidence 344677899997 8999999999999999999999999999999862 Q ss_pred ---hhc----ccCccccchHHHHHHHHHHHHHHHHHhcCCcceeEccCCCeEEEEEcccccCCCEEEEEEEeccC----- Q lcl|NC_015569. 238 ---GGF----SNSGGMQFDLVSWYTMQEYLNTLNFLLRPPVVFNFNQRTHRLHIHSNTTLRLGDYLLMECSVKPS----- 305 (381) Q Consensus 238 ---~~~----~~~~~~g~~L~~y~~~~qY~~~l~~~l~~~~~f~fN~~t~rL~i~~d~~~~~gd~lviE~y~k~~----- 305 (381) ++. ..++++|++|++|++++||+.+|++||+|.|+||||++|++|+|.+| |++||+|++|+++|+. T Consensus 113 g~~~~~~~~~~~~n~~g~~l~y~t~l~sy~~~m~d~~~pl~d~~yn~~t~~l~i~~n--f~~~d~i~~e~~~k~yle~~~ 190 (307) T protein:vir:10 113 GASIGGQCKWYGPNAFGGDLGYFTQLMSYRSMMGDLLSPLPDFYYNSSSEMMKIAGQ--FKAGDLIVFEVYCKSYANVDT 190 (307) T ss_pred CCccceeeeeecccccccchhhhhHHHHHHHHHHhhcccccceeecCCceeEEEeee--ccCCceEEEEEEeccccchhh Confidence 221 23678999999999999999999999999999999999999999998 7789999999998874 Q ss_pred ----------------------------------------Ccccc--ccccchHHHHHHHHHHHHHHhHHHHHhcCCcCC Q lcl|NC_015569. 306 ----------------------------------------PDVYP--DIWNDMWLKKYATALVKYQWGVNLTKHTDVKLP 343 (381) Q Consensus 306 ----------------------------------------Pd~~~--~vYNd~WlKdYATALvK~~wGqNL~KfqG~qLP 343 (381) |+.++ ++|||||||||||||+|++|||||+|||||||| T Consensus 191 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~~YNn~WvKdYaTAL~K~~wGq~L~K~qG~qLP 270 (307) T protein:vir:10 191 MLAGTSAGYGFAMSCDGDEPSQSQLYGNPNLAGGAIYAGGSNGMLKDGAYNNRWVKDMSTAYVKELNGQVLAKHQGMQLP 270 (307) T ss_pred hhhcccccceEeeccccCCccchhhcCCchhhcccccccCccccccccccchhHHHHHHHHHHHHHHHHHHHHhCCccCC Confidence 33334 689999999999999999999999999999999 Q ss_pred CceeecHHHHHHHHHHHHHHHHHHHHhhcCCCceeeeC Q lcl|NC_015569. 344 GGITLNGEMIYNEAKQEIAEIIQKFAMDWADPVLDLVG 381 (381) Q Consensus 344 GGVTlnG~~I~~EA~~Eie~LeEeL~~~~~~Pp~~mmG 381 (381) |||||||+||++||++|+|+|||||+++|++||+ +|| T Consensus 271 GGvTldG~~i~eeA~~E~e~LreeL~~~~~~ppi-~mg 307 (307) T protein:vir:10 271 GGITIDGVRLIEEARIDIDKLRNELELLDAPPPI-IMG 307 (307) T ss_pred CceeecHHHHHHHHHHHHHHHHHHHhhcCCCCcc-ccC Confidence 9999999999999999999999999999997766 678 No 15 >protein:vir:101857 Length: 307 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:1580 # MgeName: 31 # Cross-refs: genbank:acc:YP_238876;genbank:gi:66391951;genbank:GeneID:3416684 Probab=100.00 E-value=4.9e-114 Score=641.79 Aligned_cols=250 Identities=26% Similarity=0.448 Sum_probs=230.3 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEeecHHHHHHHHHHHHHHhhhccccCcccceeEEEEecccccCcceeeeeeecc Q lcl|NC_015569. 1 MSIASPQNRKEFKEYILHKLGKPVLEINVADEQIDLAINDAFQYFHEREHFNGTERVFYRLRVEQPLLDFFETARLQETA 80 (381) Q Consensus 1 m~~~~~~s~~~lkd~ilrrLGaPvl~inv~d~Qi~d~I~~al~~f~Ey~H~dG~~~~~~~~~~~~~d~~~f~~~~i~~~~ 80 (381) |+ ++|+||+|||||||||||||||+||||||||+||||||||||||| ||||++|+|++|++|| T Consensus 1 m~-~~~~s~~eLkdyiLRrLGAPii~InVtd~Qi~DcId~Alely~Ey-HydG~~k~y~~~~ite--------------- 63 (307) T protein:vir:10 1 MS-YTCNNPLELKDAILRRLGAPIVHVEVTEEQVFDCISRALELYGEY-HYDGFHRTYATVVLTE--------------- 63 (307) T ss_pred CC-CCCCCHHHHHHHHHHhcCCceEEEEcCHHHHHHHHHHHHHHhhhh-cccccccceEEEEech--------------- Confidence 98 779999999999999999999999999999999999999999999 9999999999999885 Q ss_pred cceeeeccceeeeeccccccccccccccccceeecccceecCCcceeEEeeEEEEecccEEeccceEEEEEeecccccee Q lcl|NC_015569. 81 QSAVPQVPGAGAVDQLTLVTPGTNYTPTTDGSETRSNQPTAPANSGVTGTGLTVNWGESRTVSGGLVSVSIYSAGEGYSV 160 (381) Q Consensus 81 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ny~~~p~~~~v~~v~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 160 (381) T Consensus 64 -------------------------------------------------------------------------------- 63 (307) T protein:vir:10 64 -------------------------------------------------------------------------------- 63 (307) T ss_pred -------------------------------------------------------------------------------- Confidence Q ss_pred cceeEEecCCCCcceeEcceeeeeEEeeecceeecCCeEEcCC-CceeEEEEEEecCccccccCceeeehhhhhhhhh-- Q lcl|NC_015569. 161 GDQVIISGGNNDAVFQVTAVKDQTPLYGVEIVEQQRNWITLPD-DVIGVTKVFKVGSSSNLMTGGVIPAAFFTNPFLN-- 237 (381) Q Consensus 161 ~~~~~~~~~~~~~eyhydg~~~~y~~~~~~~~~~~~nyi~Lpd-~V~~VtkI~r~~~ss~~~~gg~a~~~~ft~~~ln-- 237 (381) ++.++|||+||| +|++||+|+|.++++..+++|.++|+||+++++. T Consensus 64 -------------------------------~~~~~g~~d~~d~~v~avt~iirt~~~~~~t~dG~a~y~w~~d~~~g~~ 112 (307) T protein:vir:10 64 -------------------------------QQAKTGIIDMKGGNVFAVTQVLRTNVGSIITMDGTAVYPWFTDFVMGMT 112 (307) T ss_pred -------------------------------hhccCCEEecCCcchhhhhhhhhhccccccccCcccccccccccceeec Confidence 344677899997 8999999999999999999999999999999862 Q ss_pred ---hhc----ccCccccchHHHHHHHHHHHHHHHHHhcCCcceeEccCCCeEEEEEcccccCCCEEEEEEEeccC----- Q lcl|NC_015569. 238 ---GGF----SNSGGMQFDLVSWYTMQEYLNTLNFLLRPPVVFNFNQRTHRLHIHSNTTLRLGDYLLMECSVKPS----- 305 (381) Q Consensus 238 ---~~~----~~~~~~g~~L~~y~~~~qY~~~l~~~l~~~~~f~fN~~t~rL~i~~d~~~~~gd~lviE~y~k~~----- 305 (381) ++. ..++++|++|++|++++||+.+|++||+|.|+||||++|++|+|.+| |++||+|++|+++|+. T Consensus 113 g~~~~~~~~~~~~n~~g~~l~y~t~l~sy~~~m~d~~~pl~d~~yn~~t~~l~i~~n--f~~~d~i~~e~~~k~yle~~~ 190 (307) T protein:vir:10 113 GASIGGQCKWYGPNAFGGDLGYFTQLMSYRSMMGDLLSPLPDFYYNSSSEMMKIAGQ--FKAGDLIVFEVYCKSYANVDT 190 (307) T ss_pred CCccceeeeeecccccccchhhhhHHHHHHHHHHhhcccccceeecCCceeEEEeee--ccCCceEEEEEEeccccchhh Confidence 221 23678999999999999999999999999999999999999999998 7789999999998874 Q ss_pred ----------------------------------------Ccccc--ccccchHHHHHHHHHHHHHHhHHHHHhcCCcCC Q lcl|NC_015569. 306 ----------------------------------------PDVYP--DIWNDMWLKKYATALVKYQWGVNLTKHTDVKLP 343 (381) Q Consensus 306 ----------------------------------------Pd~~~--~vYNd~WlKdYATALvK~~wGqNL~KfqG~qLP 343 (381) |+.++ ++|||||||||||||+|++|||||+|||||||| T Consensus 191 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~~YNn~WvKdYaTAL~K~~wGq~L~K~qG~qLP 270 (307) T protein:vir:10 191 MLAGTSAGYGFAMSCDGDEPSQSQLYGNPNLAGGAIYAGGSNGMLKDGAYNNRWVKDMSTAYVKELNGQVLAKHQGMQLP 270 (307) T ss_pred hhhcccccceEeeccccCCccchhhcCCchhhcccccccCccccccccccchhHHHHHHHHHHHHHHHHHHHHhCCccCC Confidence 33334 689999999999999999999999999999999 Q ss_pred CceeecHHHHHHHHHHHHHHHHHHHHhhcCCCceeeeC Q lcl|NC_015569. 344 GGITLNGEMIYNEAKQEIAEIIQKFAMDWADPVLDLVG 381 (381) Q Consensus 344 GGVTlnG~~I~~EA~~Eie~LeEeL~~~~~~Pp~~mmG 381 (381) |||||||+||++||++|+|+|||||+++|++||+ +|| T Consensus 271 GGvTldG~~i~eeA~~E~e~LreeL~~~~~~ppi-~mg 307 (307) T protein:vir:10 271 GGITIDGVRLIEEARIDIDKLRNELELLDAPPPI-IMG 307 (307) T ss_pred CceeecHHHHHHHHHHHHHHHHHHHhhcCCCCcc-ccC Confidence 9999999999999999999999999999997766 678 No 16 >protein:vir:100534 Length: 314 # NCBI annotation: gp13 head completion protein # Family: family:all:1103 # MgeID: mge:1488 # MgeName: 25 # Cross-refs: genbank:acc:YP_656375;genbank:gi:109290126;genbank:GeneID:4156512 Probab=100.00 E-value=1.7e-113 Score=638.79 Aligned_cols=250 Identities=27% Similarity=0.479 Sum_probs=225.7 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEeecHHHHHHHHHHHHHHhhhccccCcccceeEEEEecccccCcceeeeeeecc Q lcl|NC_015569. 1 MSIASPQNRKEFKEYILHKLGKPVLEINVADEQIDLAINDAFQYFHEREHFNGTERVFYRLRVEQPLLDFFETARLQETA 80 (381) Q Consensus 1 m~~~~~~s~~~lkd~ilrrLGaPvl~inv~d~Qi~d~I~~al~~f~Ey~H~dG~~~~~~~~~~~~~d~~~f~~~~i~~~~ 80 (381) |+ ++|+||+|||||||||||||||||||||||||||||||||||||| ||||++|+|++|++||| T Consensus 1 ma-~~~~s~~eLkdyiLRrLGAPvi~InVtddQI~DcId~ALqlf~Ey-HyDG~~k~yl~~~ite~-------------- 64 (314) T protein:vir:10 1 MS-YTTNNPLELKDAILRRLGAPIVHVEVTEQQVFDCISRALELYGEY-HYDGFHKTYATVVLTEE-------------- 64 (314) T ss_pred CC-CCCCCHHHHHHHHHHhcCCceEEEEcCHHHHHHHHHHHHHHhhhh-cccccccceEEEEechh-------------- Confidence 77 669999999999999999999999999999999999999999999 99999999999999853 Q ss_pred cceeeeccceeeeeccccccccccccccccceeecccceecCCcceeEEeeEEEEecccEEeccceEEEEEeecccccee Q lcl|NC_015569. 81 QSAVPQVPGAGAVDQLTLVTPGTNYTPTTDGSETRSNQPTAPANSGVTGTGLTVNWGESRTVSGGLVSVSIYSAGEGYSV 160 (381) Q Consensus 81 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ny~~~p~~~~v~~v~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 160 (381) T Consensus 65 -------------------------------------------------------------------------------- 64 (314) T protein:vir:10 65 -------------------------------------------------------------------------------- 64 (314) T ss_pred -------------------------------------------------------------------------------- Confidence Q ss_pred cceeEEecCCCCcceeEcceeeeeEEeeecceeecCCeEEcCC-CceeEEEEEEecCccccccCceeeehhhhhhhh--h Q lcl|NC_015569. 161 GDQVIISGGNNDAVFQVTAVKDQTPLYGVEIVEQQRNWITLPD-DVIGVTKVFKVGSSSNLMTGGVIPAAFFTNPFL--N 237 (381) Q Consensus 161 ~~~~~~~~~~~~~eyhydg~~~~y~~~~~~~~~~~~nyi~Lpd-~V~~VtkI~r~~~ss~~~~gg~a~~~~ft~~~l--n 237 (381) +.++|||+||+ +|++|++|+|.+++++.+++|.++|+||+++++ + T Consensus 65 --------------------------------~~k~g~~d~~~~~v~avt~i~rt~~~~~~~~~g~a~Y~~~~d~~lG~~ 112 (314) T protein:vir:10 65 --------------------------------QAKTGVISFAGGNVFAVTQVIRTNIGSIITMDGTAVYPWFTDFVMGMT 112 (314) T ss_pred --------------------------------hhcCCEEeeCCccceehhhhhhcccccccccCccccccccCceeeeec Confidence 34567778876 789999999999989999999999999999987 2 Q ss_pred hhc-------ccCccccchHHHHHHHHHHHHHHHHHhcCCcceeEccCCCeEEEEEcccccCCCEEEEEEEeccC----- Q lcl|NC_015569. 238 GGF-------SNSGGMQFDLVSWYTMQEYLNTLNFLLRPPVVFNFNQRTHRLHIHSNTTLRLGDYLLMECSVKPS----- 305 (381) Q Consensus 238 ~~~-------~~~~~~g~~L~~y~~~~qY~~~l~~~l~~~~~f~fN~~t~rL~i~~d~~~~~gd~lviE~y~k~~----- 305 (381) +++ ..+++||++|++|++++||+.+|++||+|.|+||||+.|++|+|.++ |+++|+|++|+++|+. T Consensus 113 ~~~~~~~~~~~~pn~fg~~~~yf~~~m~y~~ml~d~~~pl~d~~~n~~~~~l~i~~n--f~~~Dll~~e~~~k~~~~~d~ 190 (314) T protein:vir:10 113 GASIGGQCRWYGPNAFGADLGYFTQLMSYRDMMGDMLSPLPDFFFNSTTEMMRVAGK--LQKGDLLVFEVYCKSYANVDS 190 (314) T ss_pred ccccccccceeccccccchhHHHHHHHHHHHHHHhhhcccccccccCCcceEEEeec--ccCCcEEEEEEEeccccccch Confidence 221 13588899999999999999999999999999999999999999997 7789999999988663 Q ss_pred -----------------------------------Cc--------------cccccccchHHHHHHHHHHHHHHhHHHHH Q lcl|NC_015569. 306 -----------------------------------PD--------------VYPDIWNDMWLKKYATALVKYQWGVNLTK 336 (381) Q Consensus 306 -----------------------------------Pd--------------~~~~vYNd~WlKdYATALvK~~wGqNL~K 336 (381) |+ .++++|||||||||||||+|++|||||+| T Consensus 191 ~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~nP~~~~~~~~~g~~~~~~~~~~yNnrWvKdYaTALvK~~wGqnL~K 270 (314) T protein:vir:10 191 MLSGVDSTLSGTSAGYGFAMSDDDSVPSVAQKYANPNMSHGQIYAGQSNGMSKDNSYNNRWVKDMATAFVKELNGQVLAK 270 (314) T ss_pred hccccccccceeeeeceecccccccchhhhhhhcCcccccceeeeccccccccccccchhhHHHHHHHHHHHHHHHHHHH Confidence 43 23567999999999999999999999999 Q ss_pred hcCCcCCCceeecHHHHHHHHHHHHHHHHHHHHhhcCCCceeeeC Q lcl|NC_015569. 337 HTDVKLPGGITLNGEMIYNEAKQEIAEIIQKFAMDWADPVLDLVG 381 (381) Q Consensus 337 fqG~qLPGGVTlnG~~I~~EA~~Eie~LeEeL~~~~~~Pp~~mmG 381 (381) ||||||||||||||+|||+||++|+|+|||||+++|++||+ +|| T Consensus 271 ~qG~qLPGGVTldG~~l~eea~~E~e~Lreel~~~~~~pp~-~mg 314 (314) T protein:vir:10 271 HQGMQLPGGVTIDGIRLIEEARIDIDKLRQELELLDGPPPI-IMG 314 (314) T ss_pred hCCcccCCceeecHHHHHHHHHHHHHHHHHHHhhccCCCcc-ccC Confidence 99999999999999999999999999999999999986666 778 No 17 >protein:vir:98189 Length: 307 # NCBI annotation: gp13 head completion # Family: family:all:1103 # MgeID: mge:1667 # MgeName: RB43 # Cross-refs: genbank:acc:YP_239190;genbank:gi:66391665;genbank:GeneID:3416291 Probab=99.15 E-value=2.8e-14 Score=94.93 Aligned_cols=217 Identities=12% Similarity=0.104 Sum_probs=117.3 Q ss_pred eEEEEEeecccc---c---eecceeEEecCCC-------------CcceeEcceeeeeEEeeecceeecCCeEEcCCCce Q lcl|NC_015569. 146 LVSVSIYSAGEG---Y---SVGDQVIISGGNN-------------DAVFQVTAVKDQTPLYGVEIVEQQRNWITLPDDVI 206 (381) Q Consensus 146 ~f~~~~~~~~~~---~---~~~~~~~~~~~~~-------------~~eyhydg~~~~y~~~~~~~~~~~~nyi~Lpd~V~ 206 (381) ||. + +=+. | -.|--||=--=+. =+||||||++|+|+++++++++.+++|+..|++|+ T Consensus 1 m~t-~---s~~eLKdyiLRrLGAPvi~InVtd~Qi~DcId~ALqly~EyHydG~~k~y~~~~i~~d~~~~~~~~~~~~v~ 76 (307) T protein:vir:98 1 MIT-N---NPEQLKDEILRRLGAPIIKIEITQDQIYDCIQRALDLYAEYHYNGTNKSYIILTLGEDNPRNVFDLSKEHIF 76 (307) T ss_pred CCc-C---CHHHHHHHHHHhcCCceeEEecCHHHHHHHHHHHHHHHHhhhcccccceeEEEEecccccccceecCCchHh Confidence 332 1 1000 0 0111111000011 16999999999999999999999888877788999 Q ss_pred eEEEEEEecCccccccCceeeehhhhhhhhh------hhcccCccccchHHHHHHHHHHHHHHHHHhcCCcceeEccCCC Q lcl|NC_015569. 207 GVTKVFKVGSSSNLMTGGVIPAAFFTNPFLN------GGFSNSGGMQFDLVSWYTMQEYLNTLNFLLRPPVVFNFNQRTH 280 (381) Q Consensus 207 ~VtkI~r~~~ss~~~~gg~a~~~~ft~~~ln------~~~~~~~~~g~~L~~y~~~~qY~~~l~~~l~~~~~f~fN~~t~ 280 (381) +||||+|.++++.+++++.++|+||+++++. ++.++++.+| .-.|.--.+|...|....+ .-++ T Consensus 77 aVT~iirt~~g~~~s~dg~aty~w~~d~~~g~~~~~~g~~~~s~~~g--~n~~g~~l~yf~q~~~Y~~--------~l~d 146 (307) T protein:vir:98 77 AVTKVLRTNIGSLVSMDGTAVYPWFTDFLMGLTGGSLGGRCASSVYG--MNAYGADLGYFTQMMSYQR--------SMQE 146 (307) T ss_pred HHHHHhhcCccceecccccccccccCcceeecCCcccccccccceec--CccccchHHHHHHHHHHHH--------HHHH Confidence 9999999999999999999999999999873 3345556654 3444444555555554443 2333 Q ss_pred eEEEEEcc--cccCCCEEEEEEEeccCCccccccccchHHHHHHHHHH---------------------HHHHhHH-HHH Q lcl|NC_015569. 281 RLHIHSNT--TLRLGDYLLMECSVKPSPDVYPDIWNDMWLKKYATALV---------------------KYQWGVN-LTK 336 (381) Q Consensus 281 rL~i~~d~--~~~~gd~lviE~y~k~~Pd~~~~vYNd~WlKdYATALv---------------------K~~wGqN-L~K 336 (381) .|-=..|| +-..|++-+.=-+++-++-+ +..|+|.|..-.= +.+|--. ..- T Consensus 147 l~~p~~dy~yn~~~~~l~~~gn~~~~d~i~-----~e~~~ks~ld~~~~i~~~~~y~~~~~~~~~d~~~~d~~~n~y~~~ 221 (307) T protein:vir:98 147 LLAPLPDYWYNDDTGQFCVWGKVNNGDIIV-----IEVMVRSFVDVPSAVGSVAGYATAGSNAVEDQSIADIYDNPYNAV 221 (307) T ss_pred hhccccceeecCcccceeeeeccccCceEE-----EEEeecccccchHHhcccccceeecccccccccchhhccchhhhh Confidence 33222333 33356666665555555443 3344444432211 1111111 011 Q ss_pred hcCCcCCC--ce-----eecHHHHHHHHHHHHHHHHHHHHhhcCC---CceeeeC Q lcl|NC_015569. 337 HTDVKLPG--GI-----TLNGEMIYNEAKQEIAEIIQKFAMDWAD---PVLDLVG 381 (381) Q Consensus 337 fqG~qLPG--GV-----TlnG~~I~~EA~~Eie~LeEeL~~~~~~---Pp~~mmG 381 (381) ..+...+- .+ --|-+=+-+=|..-+++.--+.+.++.. |-++=+= T Consensus 222 ~~~yra~~~~~~~~~t~aYNnrWvKdYaTALvK~~wGq~L~K~qG~qLPGGVTln 276 (307) T protein:vir:98 222 VGGVRAGQGTTVTGGTSAYNNRWVKDYSTALVKEINGQILAKFQGMQLPGGVAPD 276 (307) T ss_pred hcceeecCCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcCccCCCceeec Confidence 11111111 11 1344555556666666666655554441 1111111 No 18 >protein:vir:104694 Length: 281 # NCBI annotation: T4-like neck protein # Family: family:all:1103 # MgeID: mge:1630 # MgeName: P-SSM2 # Cross-refs: genbank:acc:YP_214352;genbank:gi:61805992;genbank:GeneID:3294213 Probab=99.14 E-value=2.8e-13 Score=89.42 Aligned_cols=224 Identities=14% Similarity=0.087 Sum_probs=106.3 Q ss_pred cccEEeccceEEEEEeeccccceecceeEEecCCC-------------CcceeEcceeeeeEEeeecceeecCCeEEcCC Q lcl|NC_015569. 137 GESRTVSGGLVSVSIYSAGEGYSVGDQVIISGGNN-------------DAVFQVTAVKDQTPLYGVEIVEQQRNWITLPD 203 (381) Q Consensus 137 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~-------------~~eyhydg~~~~y~~~~~~~~~~~~nyi~Lpd 203 (381) |.+-.-...|-+.-.= -.|--||=--=+. =+||||||++|+|+++++++++.++++|++|+ T Consensus 1 ma~p~s~~eLkdyiLR------rLGAPii~InVtd~Qi~DcId~Alely~EyHydG~~k~y~~~~i~~d~~~~g~~d~~~ 74 (281) T protein:vir:10 1 MAKPASRQQLIDYCLR------KLGAPVLEINLDDDQIDDSVDDAIQLFNERHFDGVERMFLKYKITQADLDRGRAKGTD 74 (281) T ss_pred CCCCCCHHHHHHHHHH------hcCCceEEEEcCHHHHHHHHHHHHHHhhhhcccccccceEEEEechhhhhcceeeecC Confidence 2221100000000000 0111111000011 16999999999999999999999999999997 Q ss_pred -CceeEEEEEEecCccccccCceeeehhhh--hhhhh--------hhcccCccccchHHHHHHHHHHHHHHHHHhcCC-- Q lcl|NC_015569. 204 -DVIGVTKVFKVGSSSNLMTGGVIPAAFFT--NPFLN--------GGFSNSGGMQFDLVSWYTMQEYLNTLNFLLRPP-- 270 (381) Q Consensus 204 -~V~~VtkI~r~~~ss~~~~gg~a~~~~ft--~~~ln--------~~~~~~~~~g~~L~~y~~~~qY~~~l~~~l~~~-- 270 (381) .+++|++|.|.+++ |+|.|+++||+ ++++. ..+.+ ++++.++..|. .+|+..+.+++... T Consensus 75 ~~~~avt~i~~t~~~----~~G~at~~w~~~~ny~~~p~~v~G~~~~~g~-~s~~~~~~~f~--~~yq~~lndly~~~~~ 147 (281) T protein:vir:10 75 GVGIVTTTATSTNIA----GYGTTTSSWYETSNFLQVPDSVVGIEKIFKF-DTSTISGGMFS--IKYQLFLNDLYNFNSV 147 (281) T ss_pred cceeEEEeeeccccc----cccccccchhhcccceecCccceeeeeeccc-cccccCcceee--cchhhhhhhhccCCch Confidence 88999999986644 78999999998 33331 11222 22234555564 57888777775533 Q ss_pred --------------cceeEccCCCeEEEEEcccccCCCEEEEEEEeccCCcc---cccccc--ch--HHHHHHHHHHHHH Q lcl|NC_015569. 271 --------------VVFNFNQRTHRLHIHSNTTLRLGDYLLMECSVKPSPDV---YPDIWN--DM--WLKKYATALVKYQ 329 (381) Q Consensus 271 --------------~~f~fN~~t~rL~i~~d~~~~~gd~lviE~y~k~~Pd~---~~~vYN--d~--WlKdYATALvK~~ 329 (381) +++.+|+.. ++..|. .+|.|.+|+..+.-.++ --..|+ || .=.-|----+|+. T Consensus 148 ~L~~y~m~~qyl~~~d~v~n~~~---~~~~n~---~~drL~~d~d~~~~~~d~~~~~~~y~~~dP~~~~~~YNnrWvKdY 221 (281) T protein:vir:10 148 ELLQYSMVKSYLEDIDFLLTTDK---QVRFNK---RQDRLYLDIDWGAESLDNFLVLDCYRALDPTSFTQVYNDPFLKLY 221 (281) T ss_pred hhhhhhhhhhhhhhhHhhcCCCc---eEEEee---eCCeEEEEEecccccCCCceEEeeeeccCCcccccccchhHHHHH Confidence 233344433 233332 36899999944322221 111111 00 0001111122222 Q ss_pred HhHHHHHhc-CCcC--CCceeecHHHHHHHHHHHHHHHHHHHHhhcCCCcee----eeC Q lcl|NC_015569. 330 WGVNLTKHT-DVKL--PGGITLNGEMIYNEAKQEIAEIIQKFAMDWADPVLD----LVG 381 (381) Q Consensus 330 wGqNL~Kfq-G~qL--PGGVTlnG~~I~~EA~~Eie~LeEeL~~~~~~Pp~~----mmG 381 (381) ---|.|-+ |.-| =+|+.|=|= +-=++++-+|+-|+|...+-+.--.. =++ T Consensus 222 -aTAL~K~~wGq~L~K~qG~qLPGG-vTvnG~~i~eeA~~E~e~L~eel~~~~~~pP~d 278 (281) T protein:vir:10 222 -LTALMKRQWGQNLIKFRGVKLPGG-IELNGREIFDDAERDIESLRSRMASEYELPPYD 278 (281) T ss_pred -HHHHHHHHHHHHHHHhCCccCCCc-eeecHHHHHHHHHHHHHHHHHHHhhccCCCccc Confidence 22333332 1111 122222111 11245555555555544322211111 222 No 19 >protein:vir:106985 Length: 276 # NCBI annotation: neck protein gp13 # Family: family:all:1103 # MgeID: mge:1459 # MgeName: S-PM2 # Cross-refs: genbank:acc:YP_195127;genbank:gi:58532904;uniprot:Q5GQW0;genbank:GeneID:3260482 Probab=99.13 E-value=3.2e-13 Score=89.07 Aligned_cols=194 Identities=9% Similarity=0.067 Sum_probs=111.7 Q ss_pred cccEEeccceEEEEEeeccccceecceeEEecCCC-------------CcceeEcceeeeeEEeeecceeecCCeEEcCC Q lcl|NC_015569. 137 GESRTVSGGLVSVSIYSAGEGYSVGDQVIISGGNN-------------DAVFQVTAVKDQTPLYGVEIVEQQRNWITLPD 203 (381) Q Consensus 137 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~-------------~~eyhydg~~~~y~~~~~~~~~~~~nyi~Lpd 203 (381) |..---...|-+.-.= -.|--||=--=+. =+||||||++|+|+++++++++...+ T Consensus 1 ma~p~s~~eLkdyiLR------rLGaPii~InVtd~Qi~DcId~Alely~EyHydG~~k~y~~~~i~~dd~~~~------ 68 (276) T protein:vir:10 1 MAKPSSKQELIDYCKR------QLGAPVLQINTDSAQDDDIIDQAIQYYHEYHFDGIERMYLKHQFTADDVTRF------ 68 (276) T ss_pred CCCCCCHHHHHHHHHH------hcCCceEEEEcCHHHHHHHHHHHHHHhhhhcccccccceEEEEechHHhhhh------ Confidence 2110000000000000 0011111000011 16999999999999999999988774 Q ss_pred CceeEEEEEEecCccccccCceeeehhhhhhhhh--hhcc------cCccccchHHHHHHHHHHHHHHHHHhcCCcceeE Q lcl|NC_015569. 204 DVIGVTKVFKVGSSSNLMTGGVIPAAFFTNPFLN--GGFS------NSGGMQFDLVSWYTMQEYLNTLNFLLRPPVVFNF 275 (381) Q Consensus 204 ~V~~VtkI~r~~~ss~~~~gg~a~~~~ft~~~ln--~~~~------~~~~~g~~L~~y~~~~qY~~~l~~~l~~~~~f~f 275 (381) ++.+.+.+++++.++.+.++|.||+++++. +++. .+++|++++.+| ++++ | T Consensus 69 ----~~~~~~~~~~s~~~~~g~~~Y~~~pd~v~gi~~v~~g~s~~~g~n~f~~~~q~f--l~d~---------------~ 127 (276) T protein:vir:10 69 ----TSSDQLTTAPNNDDWENRNNYIQVPDAVIGISKVFGVSSNFLRNNLFGLSNQYY--LMDL---------------F 127 (276) T ss_pred ----hhhhhcccccceeeeeccCcceecCcchhhhhhhcccCccccCCccccccHHHH--HHHH---------------h Confidence 455778888999999999999999999873 2221 256677888888 2222 7 Q ss_pred ccCCCeEEEEEcccccCCCEEEEEEEeccCCcc------------------------ccccccchHHHHHHHHHHHHHHh Q lcl|NC_015569. 276 NQRTHRLHIHSNTTLRLGDYLLMECSVKPSPDV------------------------YPDIWNDMWLKKYATALVKYQWG 331 (381) Q Consensus 276 N~~t~rL~i~~d~~~~~gd~lviE~y~k~~Pd~------------------------~~~vYNd~WlKdYATALvK~~wG 331 (381) |..+++|++.++ ++.+|++++|+|.+. .|. .+.+|+|+|+- T Consensus 128 ~~~~~ql~~~g~--~~~~dy~~ve~~~~~-id~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~------------ 192 (276) T protein:vir:10 128 SFSTGSAFSFGN--FDLTNYYMIKQHFET-IDMIINTGSLIEYRFNKRQDRLYIDIDTSRIVEDQYLL------------ 192 (276) T ss_pred cccccceeeccc--eeeeeEEEEEEEecc-cceeecCCceeEEeeeccCCccccccccccccCCHHHH------------ Confidence 899999999998 668999999999976 221 12444555532 Q ss_pred HHHHHhcCCcCCCce--eecHHHHHHHHHHHHHHHHHHHHhhcCC---CceeeeC Q lcl|NC_015569. 332 VNLTKHTDVKLPGGI--TLNGEMIYNEAKQEIAEIIQKFAMDWAD---PVLDLVG 381 (381) Q Consensus 332 qNL~KfqG~qLPGGV--TlnG~~I~~EA~~Eie~LeEeL~~~~~~---Pp~~mmG 381 (381) +..++.. =|-+. --|-+=+-+=|..-.+++--+.+.++.. |-++=+= T Consensus 193 --~~~~r~~-dP~~~~~~YNn~WvKdYaTAL~K~~wGq~L~K~qG~qLPGGvTvn 244 (276) T protein:vir:10 193 --IDCYRYL-NPDDFTQVYDDSFVKRYATALLKRQWGQNLIKYNSVQLPGGITLN 244 (276) T ss_pred --hhccccc-CCcccccccchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeeC Confidence 2223211 23332 2355555566666666666555544431 1111111 No 20 >protein:vir:104585 Length: 268 # NCBI annotation: gp13 # Family: family:all:1103 # MgeID: mge:1548 # MgeName: P-SSM4 # Cross-refs: genbank:acc:YP_214649;genbank:gi:61806290;genbank:GeneID:3294640 Probab=99.08 E-value=1.2e-13 Score=91.50 Aligned_cols=194 Identities=9% Similarity=-0.024 Sum_probs=104.9 Q ss_pred cccEEeccceEEEEEeeccccc------eecceeEEecCCC-------------CcceeEcceeeeeEEeeecceeecCC Q lcl|NC_015569. 137 GESRTVSGGLVSVSIYSAGEGY------SVGDQVIISGGNN-------------DAVFQVTAVKDQTPLYGVEIVEQQRN 197 (381) Q Consensus 137 ~~~~~~~~~~f~~~~~~~~~~~------~~~~~~~~~~~~~-------------~~eyhydg~~~~y~~~~~~~~~~~~n 197 (381) |+.... .| -++. -.|--||=--=+. =+||||||++|+|++ T Consensus 1 m~~~~~-~s---------~~eLkdyiLRrLGaPii~InVtd~Qi~DcId~Alely~EyHydG~~k~y~~----------- 59 (268) T protein:vir:10 1 MSATRP-AS---------KTELKDYALRRLGFPTIDINVATEQLDDLVEEAIDYYQEYHYNGSFQTFMR----------- 59 (268) T ss_pred CCCCCC-CC---------HHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhcccccccceEE----------- Confidence 222111 01 0000 0111111100011 169999999999995 Q ss_pred eEEcCCCceeEEEEEEecCccccccCceeeehhhhhhhhhhhcccCccccchHHHHHHHHHHHHHHHHHhcCCcceeEcc Q lcl|NC_015569. 198 WITLPDDVIGVTKVFKVGSSSNLMTGGVIPAAFFTNPFLNGGFSNSGGMQFDLVSWYTMQEYLNTLNFLLRPPVVFNFNQ 277 (381) Q Consensus 198 yi~Lpd~V~~VtkI~r~~~ss~~~~gg~a~~~~ft~~~ln~~~~~~~~~g~~L~~y~~~~qY~~~l~~~l~~~~~f~fN~ 277 (381) ++||++.|.++++. ++++.++++|+++++. ...+++|+ +.+|.+++||+.++++||+|.|+||||+ T Consensus 60 --------f~vT~~~rt~~~~~-t~~~t~~~~~~~nyi~----~p~~~~Gv-~~vf~~~~~~~~~~~nm~~~~~q~~lnd 125 (268) T protein:vir:10 60 --------IEVTEAIKTQAKGF-TQEGSTPWYGQDNYVS----TPPGTLGI-NHVYTNIGASSIVPGNIFNIKYQIFLND 125 (268) T ss_pred --------EEechHHhhccccc-cccccccccCCCccee----cCccccch-hhhhccccccccccchhhcccchhhccc Confidence 46677778876665 6788888888777752 34567776 8999999999999999999999999998 Q ss_pred CCCeEEEEEcccccCCCEEEEEEEeccCCccc---------ccc---ccchHHHHHHHH--------HHHHHHhHHHHHh Q lcl|NC_015569. 278 RTHRLHIHSNTTLRLGDYLLMECSVKPSPDVY---------PDI---WNDMWLKKYATA--------LVKYQWGVNLTKH 337 (381) Q Consensus 278 ~t~rL~i~~d~~~~~gd~lviE~y~k~~Pd~~---------~~v---YNd~WlKdYATA--------LvK~~wGqNL~Kf 337 (381) .+. +..++++..+.+.+...++. .-. ..+||--+-... +++..-|.+-.-| T Consensus 126 ~~~---------~~~~~i~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~l~~~~~~~dp~~~ 196 (268) T protein:vir:10 126 IYS---------MTHGQILHYFLTSQYLETLDFVTNSQANRRVKWNEHSNRLYLDFDWDDLTVGDYIMVDMTMRQDPTTF 196 (268) T ss_pred ccc---------ccceeEEEEEEeeeeecchhhhhccCCCcceeeecccCceeeeeeccCcccchhhhhhhhhccCCccc Confidence 542 33455555555555544321 011 123322111100 3333333332222 Q ss_pred cCCcCCCceeecHHHHHHHHHHHHHHHHHHHHhhcCC---CceeeeC Q lcl|NC_015569. 338 TDVKLPGGITLNGEMIYNEAKQEIAEIIQKFAMDWAD---PVLDLVG 381 (381) Q Consensus 338 qG~qLPGGVTlnG~~I~~EA~~Eie~LeEeL~~~~~~---Pp~~mmG 381 (381) ++ --|-+=+-+=|..-++++--+.+.++.. |-++=+= T Consensus 197 ~~-------~YNn~WvKdYaTAL~K~~wGq~L~K~qG~qLPGGvTvn 236 (268) T protein:vir:10 197 TD-------MFNDNWLKDYVEALFQQQWGRNLSKYDGIQMLGGVTLN 236 (268) T ss_pred ch-------hhhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCceeec Confidence 21 2355555566666666666555544441 1111111 No 21 >protein:vir:101857 Length: 307 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:1580 # MgeName: 31 # Cross-refs: genbank:acc:YP_238876;genbank:gi:66391951;genbank:GeneID:3416684 Probab=99.04 E-value=7.8e-14 Score=92.44 Aligned_cols=237 Identities=12% Similarity=0.066 Sum_probs=147.7 Q ss_pred CCCCCCC-----CHHHHHHHHHHhc---C--------CceEEEeecHHHHHHHHHHHHHHhhhccccCcccceeEEEEec Q lcl|NC_015569. 1 MSIASPQ-----NRKEFKEYILHKL---G--------KPVLEINVADEQIDLAINDAFQYFHEREHFNGTERVFYRLRVE 64 (381) Q Consensus 1 m~~~~~~-----s~~~lkd~ilrrL---G--------aPvl~inv~d~Qi~d~I~~al~~f~Ey~H~dG~~~~~~~~~~~ 64 (381) +.+--|- +.+++-|-|-|-| + .--+.+.|++||+.+ . .+. T Consensus 17 RrLGAPii~InVtd~Qi~DcId~Alely~EyHydG~~k~y~~~~ite~~~~~--------------------g----~~d 72 (307) T protein:vir:10 17 RRLGAPIVHVEVTEEQVFDCISRALELYGEYHYDGFHRTYATVVLTEQQAKT--------------------G----IID 72 (307) T ss_pred HhcCCceEEEEcCHHHHHHHHHHHHHHhhhhcccccccceEEEEechhhccC--------------------C----EEe Confidence 3332221 2333333332222 1 123344445544321 1 122 Q ss_pred ccccCcceeeeeeecccceeeeccceeeeeccccccccccccccccceeecccceecCCcceeEEeeEEEEecccEEecc Q lcl|NC_015569. 65 QPLLDFFETARLQETAQSAVPQVPGAGAVDQLTLVTPGTNYTPTTDGSETRSNQPTAPANSGVTGTGLTVNWGESRTVSG 144 (381) Q Consensus 65 ~~d~~~f~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ny~~~p~~~~v~~v~~~~~~~~~~~~~~ 144 (381) =.|-++||||+|+||+.|++.+|+|+++|+||+||+.|++|.++..+... ..|+...+..+++++.|+++...+ T Consensus 73 ~~d~~v~avt~iirt~~~~~~t~dG~a~y~w~~d~~~g~~g~~~~~~~~~------~~~n~~g~~l~y~t~l~sy~~~m~ 146 (307) T protein:vir:10 73 MKGGNVFAVTQVLRTNVGSIITMDGTAVYPWFTDFVMGMTGASIGGQCKW------YGPNAFGGDLGYFTQLMSYRSMMG 146 (307) T ss_pred cCCcchhhhhhhhhhccccccccCcccccccccccceeecCCccceeeee------ecccccccchhhhhHHHHHHHHHH Confidence 24668999999999999999999999999999999999999987765443 567777788899999999999999 Q ss_pred ceEEEEEeeccccceecceeEEecCCCCcceeEcceeeeeEEeeecceeecCCeEEcCCCceeEEEEEEecCccccccCc Q lcl|NC_015569. 145 GLVSVSIYSAGEGYSVGDQVIISGGNNDAVFQVTAVKDQTPLYGVEIVEQQRNWITLPDDVIGVTKVFKVGSSSNLMTGG 224 (381) Q Consensus 145 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~eyhydg~~~~y~~~~~~~~~~~~nyi~Lpd~V~~VtkI~r~~~ss~~~~gg 224 (381) +||+-.- -|-|++. .+..+|. .++ T Consensus 147 d~~~pl~----------------------d~~yn~~-------------------------t~~l~i~-----~nf---- 170 (307) T protein:vir:10 147 DLLSPLP----------------------DFYYNSS-------------------------SEMMKIA-----GQF---- 170 (307) T ss_pred hhccccc----------------------ceeecCC-------------------------ceeEEEe-----eec---- Confidence 8886321 0112210 1111221 101 Q ss_pred eeeehhhhhhhhhhhcccCccccchHHHHHH-HHHHHHHHHHHhcCCcceeEccCCCeEEEEEcccccCCCEEEEEEEe- Q lcl|NC_015569. 225 VIPAAFFTNPFLNGGFSNSGGMQFDLVSWYT-MQEYLNTLNFLLRPPVVFNFNQRTHRLHIHSNTTLRLGDYLLMECSV- 302 (381) Q Consensus 225 ~a~~~~ft~~~ln~~~~~~~~~g~~L~~y~~-~~qY~~~l~~~l~~~~~f~fN~~t~rL~i~~d~~~~~gd~lviE~y~- 302 (381) . .++++.|++ ++||+++++++++....|+|+.+++|++++.. .+..++.++++||| T Consensus 171 ------------------~---~~d~i~~e~~~k~yle~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 228 (307) T protein:vir:10 171 ------------------K---AGDLIVFEVYCKSYANVDTMLAGTSAGYGFAMSCDGDEPSQS-QLYGNPNLAGGAIYA 228 (307) T ss_pred ------------------c---CCceEEEEEEeccccchhhhhhcccccceEeeccccCCccch-hhcCCchhhcccccc Confidence 1 135555555 79999999999999999999999999965431 45678999999999 Q ss_pred ---cc------CCccccccc---------------------------cchHHHHHHHHHHHHHHhHHHHHhcCCcCCCc Q lcl|NC_015569. 303 ---KP------SPDVYPDIW---------------------------NDMWLKKYATALVKYQWGVNLTKHTDVKLPGG 345 (381) Q Consensus 303 ---k~------~Pd~~~~vY---------------------------Nd~WlKdYATALvK~~wGqNL~KfqG~qLPGG 345 (381) .. +=+..=+-| |.+=+.+=|.+.+.+..=+-+.++.-.++-=| T Consensus 229 ~~p~~~t~~~~YNn~WvKdYaTAL~K~~wGq~L~K~qG~qLPGGvTldG~~i~eeA~~E~e~LreeL~~~~~~ppi~mg 307 (307) T protein:vir:10 229 GGSNGMLKDGAYNNRWVKDMSTAYVKELNGQVLAKHQGMQLPGGITIDGVRLIEEARIDIDKLRNELELLDAPPPIIMG 307 (307) T ss_pred cCccccccccccchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHhhcCCCCccccC Confidence 22 222212223 44555555555555555555555543333333 No 22 >protein:vir:101153 Length: 307 # NCBI annotation: neck protein # Family: family:all:1103 # MgeID: mge:1582 # MgeName: 44RR2.8t # Cross-refs: genbank:acc:NP_932504;genbank:gi:37651630;genbank:GeneID:2610646 Probab=99.04 E-value=7.8e-14 Score=92.44 Aligned_cols=237 Identities=12% Similarity=0.066 Sum_probs=147.7 Q ss_pred CCCCCCC-----CHHHHHHHHHHhc---C--------CceEEEeecHHHHHHHHHHHHHHhhhccccCcccceeEEEEec Q lcl|NC_015569. 1 MSIASPQ-----NRKEFKEYILHKL---G--------KPVLEINVADEQIDLAINDAFQYFHEREHFNGTERVFYRLRVE 64 (381) Q Consensus 1 m~~~~~~-----s~~~lkd~ilrrL---G--------aPvl~inv~d~Qi~d~I~~al~~f~Ey~H~dG~~~~~~~~~~~ 64 (381) +.+--|- +.+++-|-|-|-| + .--+.+.|++||+.+ . .+. T Consensus 17 RrLGAPii~InVtd~Qi~DcId~Alely~EyHydG~~k~y~~~~ite~~~~~--------------------g----~~d 72 (307) T protein:vir:10 17 RRLGAPIVHVEVTEEQVFDCISRALELYGEYHYDGFHRTYATVVLTEQQAKT--------------------G----IID 72 (307) T ss_pred HhcCCceEEEEcCHHHHHHHHHHHHHHhhhhcccccccceEEEEechhhccC--------------------C----EEe Confidence 3332221 2333333332222 1 123344445544321 1 122 Q ss_pred ccccCcceeeeeeecccceeeeccceeeeeccccccccccccccccceeecccceecCCcceeEEeeEEEEecccEEecc Q lcl|NC_015569. 65 QPLLDFFETARLQETAQSAVPQVPGAGAVDQLTLVTPGTNYTPTTDGSETRSNQPTAPANSGVTGTGLTVNWGESRTVSG 144 (381) Q Consensus 65 ~~d~~~f~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ny~~~p~~~~v~~v~~~~~~~~~~~~~~ 144 (381) =.|-++||||+|+||+.|++.+|+|+++|+||+||+.|++|.++..+... ..|+...+..+++++.|+++...+ T Consensus 73 ~~d~~v~avt~iirt~~~~~~t~dG~a~y~w~~d~~~g~~g~~~~~~~~~------~~~n~~g~~l~y~t~l~sy~~~m~ 146 (307) T protein:vir:10 73 MKGGNVFAVTQVLRTNVGSIITMDGTAVYPWFTDFVMGMTGASIGGQCKW------YGPNAFGGDLGYFTQLMSYRSMMG 146 (307) T ss_pred cCCcchhhhhhhhhhccccccccCcccccccccccceeecCCccceeeee------ecccccccchhhhhHHHHHHHHHH Confidence 24668999999999999999999999999999999999999987765443 567777788899999999999999 Q ss_pred ceEEEEEeeccccceecceeEEecCCCCcceeEcceeeeeEEeeecceeecCCeEEcCCCceeEEEEEEecCccccccCc Q lcl|NC_015569. 145 GLVSVSIYSAGEGYSVGDQVIISGGNNDAVFQVTAVKDQTPLYGVEIVEQQRNWITLPDDVIGVTKVFKVGSSSNLMTGG 224 (381) Q Consensus 145 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~eyhydg~~~~y~~~~~~~~~~~~nyi~Lpd~V~~VtkI~r~~~ss~~~~gg 224 (381) +||+-.- -|-|++. .+..+|. .++ T Consensus 147 d~~~pl~----------------------d~~yn~~-------------------------t~~l~i~-----~nf---- 170 (307) T protein:vir:10 147 DLLSPLP----------------------DFYYNSS-------------------------SEMMKIA-----GQF---- 170 (307) T ss_pred hhccccc----------------------ceeecCC-------------------------ceeEEEe-----eec---- Confidence 8886321 0112210 1111221 101 Q ss_pred eeeehhhhhhhhhhhcccCccccchHHHHHH-HHHHHHHHHHHhcCCcceeEccCCCeEEEEEcccccCCCEEEEEEEe- Q lcl|NC_015569. 225 VIPAAFFTNPFLNGGFSNSGGMQFDLVSWYT-MQEYLNTLNFLLRPPVVFNFNQRTHRLHIHSNTTLRLGDYLLMECSV- 302 (381) Q Consensus 225 ~a~~~~ft~~~ln~~~~~~~~~g~~L~~y~~-~~qY~~~l~~~l~~~~~f~fN~~t~rL~i~~d~~~~~gd~lviE~y~- 302 (381) . .++++.|++ ++||+++++++++....|+|+.+++|++++.. .+..++.++++||| T Consensus 171 ------------------~---~~d~i~~e~~~k~yle~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 228 (307) T protein:vir:10 171 ------------------K---AGDLIVFEVYCKSYANVDTMLAGTSAGYGFAMSCDGDEPSQS-QLYGNPNLAGGAIYA 228 (307) T ss_pred ------------------c---CCceEEEEEEeccccchhhhhhcccccceEeeccccCCccch-hhcCCchhhcccccc Confidence 1 135555555 79999999999999999999999999965431 45678999999999 Q ss_pred ---cc------CCccccccc---------------------------cchHHHHHHHHHHHHHHhHHHHHhcCCcCCCc Q lcl|NC_015569. 303 ---KP------SPDVYPDIW---------------------------NDMWLKKYATALVKYQWGVNLTKHTDVKLPGG 345 (381) Q Consensus 303 ---k~------~Pd~~~~vY---------------------------Nd~WlKdYATALvK~~wGqNL~KfqG~qLPGG 345 (381) .. +=+..=+-| |.+=+.+=|.+.+.+..=+-+.++.-.++-=| T Consensus 229 ~~p~~~t~~~~YNn~WvKdYaTAL~K~~wGq~L~K~qG~qLPGGvTldG~~i~eeA~~E~e~LreeL~~~~~~ppi~mg 307 (307) T protein:vir:10 229 GGSNGMLKDGAYNNRWVKDMSTAYVKELNGQVLAKHQGMQLPGGITIDGVRLIEEARIDIDKLRNELELLDAPPPIIMG 307 (307) T ss_pred cCccccccccccchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHhhcCCCCccccC Confidence 22 222212223 44555555555555555555555543333333 No 23 >protein:vir:81013 Length: 310 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:1888 # MgeName: Phi1 # Cross-refs: genbank:acc:YP_001469493;genbank:gi:157311450;genbank:GeneID:5602275 Probab=98.96 E-value=1e-12 Score=86.33 Aligned_cols=266 Identities=14% Similarity=0.089 Sum_probs=157.1 Q ss_pred CCCCCCC-----CHHHHHHHHHHhc---C--------CceEEEeecHHHHHHHHHHHHHHhhhccccCcccceeEEEEec Q lcl|NC_015569. 1 MSIASPQ-----NRKEFKEYILHKL---G--------KPVLEINVADEQIDLAINDAFQYFHEREHFNGTERVFYRLRVE 64 (381) Q Consensus 1 m~~~~~~-----s~~~lkd~ilrrL---G--------aPvl~inv~d~Qi~d~I~~al~~f~Ey~H~dG~~~~~~~~~~~ 64 (381) +.+--|- +.+++-|-|-|-| + .--+.+.|++||+. +. .+. T Consensus 18 RrLGAPvi~InVtd~Qi~DcId~Alely~EyHydG~~k~yl~~~ited~~~--------------------~g----~~d 73 (310) T protein:vir:81 18 RRLGAPVINVEVTEDQIYDCIQRALELYGEYHFDGVNKGYKVFRVSAEQAQ--------------------HG----VFD 73 (310) T ss_pred HhcCCceEEEecCHHHHHHHHHHHHHHhhhhcccccccceEEEEechhhhc--------------------CC----eee Confidence 2222221 2333333333222 1 23455556666541 11 123 Q ss_pred ccccCcceeeeeeecccceeeeccceeeeeccccccccccccccccceeecccceecCCcceeEEeeEEEEecccEEecc Q lcl|NC_015569. 65 QPLLDFFETARLQETAQSAVPQVPGAGAVDQLTLVTPGTNYTPTTDGSETRSNQPTAPANSGVTGTGLTVNWGESRTVSG 144 (381) Q Consensus 65 ~~d~~~f~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ny~~~p~~~~v~~v~~~~~~~~~~~~~~ 144 (381) -.|-++|++|+|+||++|++.+|||+++|+||+||+.|+++.++..+.-+++= ..|+.....+++++..+++|..-+ T Consensus 74 ~~d~~v~avt~i~~t~~g~~~t~dg~a~Y~~~~d~v~Gi~~v~g~~~~~~~~~---~~~~~~g~~l~y~~~l~~y~~~~q 150 (310) T protein:vir:81 74 LSDSGVFAVTKIIRTNVGSAATMDGTAVYPWFTDFLLGLAGVNGGLGSGCSKF---YGPNAMGGDLGYFEQLMSYRATMQ 150 (310) T ss_pred eCCcceeeeehhhhccccccccccccccccccCceeeeeccccccccchhhhh---ccccccchhhhhhhHHHHHHHHHH Confidence 34668999999999999999999999999999999999987665432222111 334444566778888888888888 Q ss_pred ceEEEEEeeccccceecceeEEecCCCCcceeEcceeeeeEEeeecceeecCCeEEcCCCceeEEEEEEecCccccccCc Q lcl|NC_015569. 145 GLVSVSIYSAGEGYSVGDQVIISGGNNDAVFQVTAVKDQTPLYGVEIVEQQRNWITLPDDVIGVTKVFKVGSSSNLMTGG 224 (381) Q Consensus 145 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~eyhydg~~~~y~~~~~~~~~~~~nyi~Lpd~V~~VtkI~r~~~ss~~~~gg 224 (381) .|||=+ --|+|+.++. ..||. .++.- T Consensus 151 ~~ln~l----------------------pdy~yn~~~~-------------------------ql~i~-----~nf~~-- 176 (310) T protein:vir:81 151 NMLNPL----------------------PDYWYNSANG-------------------------QLKIT-----GNFRE-- 176 (310) T ss_pred HHhCcc----------------------cccccCCccc-------------------------eeeee-----eeccc-- Confidence 887644 2345544221 12221 11111 Q ss_pred eeeehhhhhhhhhhhcccCccccchHHHHHH-HHHHHHHHHHHhcCCcceeEccCCCeEEEEEccc-ccCCCEEEEEEEe Q lcl|NC_015569. 225 VIPAAFFTNPFLNGGFSNSGGMQFDLVSWYT-MQEYLNTLNFLLRPPVVFNFNQRTHRLHIHSNTT-LRLGDYLLMECSV 302 (381) Q Consensus 225 ~a~~~~ft~~~ln~~~~~~~~~g~~L~~y~~-~~qY~~~l~~~l~~~~~f~fN~~t~rL~i~~d~~-~~~gd~lviE~y~ 302 (381) ++|+-+.+ ++||.++++++++....++|+.++++++++.+|+ .....+.+++|++ T Consensus 177 -----------------------gd~ii~e~~~ks~le~~d~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (310) T protein:vir:81 177 -----------------------GDLIVVELYVKSYVDVPDMIGAVAGYAHAGGCSTAGGISAVYDNPTAGLSGIVAGMG 233 (310) T ss_pred -----------------------CcEEEEEEEeecccCchhhhhcccceeEEcccCCccccccccccchhhhceeeeecc Confidence 12333332 6999999999999999999999999999999994 5688999999999 Q ss_pred ccCC---ccc----cccccchHHHH-HHHHHHHHHHhHHHHHhcCCcCCCc-eeecHHHHHHHHHHHHHHHHHHHHhhcC Q lcl|NC_015569. 303 KPSP---DVY----PDIWNDMWLKK-YATALVKYQWGVNLTKHTDVKLPGG-ITLNGEMIYNEAKQEIAEIIQKFAMDWA 373 (381) Q Consensus 303 k~~P---d~~----~~vYNd~WlKd-YATALvK~~wGqNL~KfqG~qLPGG-VTlnG~~I~~EA~~Eie~LeEeL~~~~~ 373 (381) ..+| +.+ =+-|--..+|+ |.-.|+|-+ |.-| =-|+.|=|= +-=++++=++.-++|+ + -+.---. T Consensus 234 ~~~~~~~~~YNnrWvKdYaTAL~K~~wGqnL~K~q-G~qL--PGGVTlnG~~i~eeA~~E~e~LreEl---~-~~~pP~~ 306 (310) T protein:vir:81 234 PISENKQGAYNNRWVKDMATAFTKEVWGSIMAKHQ-GLQL--PGGVTVDGIRIIEEARADIEKLRQEL---E-LLDPPFG 306 (310) T ss_pred cCCCccccccchhHHHHHHHHHHHHHHHHHHHHhC-CccC--CCceeecHHHHHHHHHHHHHHHHHHH---H-hhCCCCC Confidence 7432 222 34456666665 455566655 2222 235555443 2223444445555544 2 2222112 Q ss_pred CCce Q lcl|NC_015569. 374 DPVL 377 (381) Q Consensus 374 ~Pp~ 377 (381) .-.+ T Consensus 307 i~~~ 310 (310) T protein:vir:81 307 ILMI 310 (310) T ss_pred eeeC Confidence 2222 No 24 >protein:vir:6589 Length: 310 # NCBI annotation: neck protein # Family: family:all:1103 # MgeID: mge:139 # MgeName: RB49 # Cross-refs: genbank:acc:NP_891720;genbank:gi:33620666;genbank:GeneID:1725419 Probab=98.96 E-value=1e-12 Score=86.33 Aligned_cols=266 Identities=14% Similarity=0.089 Sum_probs=157.1 Q ss_pred CCCCCCC-----CHHHHHHHHHHhc---C--------CceEEEeecHHHHHHHHHHHHHHhhhccccCcccceeEEEEec Q lcl|NC_015569. 1 MSIASPQ-----NRKEFKEYILHKL---G--------KPVLEINVADEQIDLAINDAFQYFHEREHFNGTERVFYRLRVE 64 (381) Q Consensus 1 m~~~~~~-----s~~~lkd~ilrrL---G--------aPvl~inv~d~Qi~d~I~~al~~f~Ey~H~dG~~~~~~~~~~~ 64 (381) +.+--|- +.+++-|-|-|-| + .--+.+.|++||+. +. .+. T Consensus 18 RrLGAPvi~InVtd~Qi~DcId~Alely~EyHydG~~k~yl~~~ited~~~--------------------~g----~~d 73 (310) T protein:vir:65 18 RRLGAPVINVEVTEDQIYDCIQRALELYGEYHFDGVNKGYKVFRVSAEQAQ--------------------HG----VFD 73 (310) T ss_pred HhcCCceEEEecCHHHHHHHHHHHHHHhhhhcccccccceEEEEechhhhc--------------------CC----eee Confidence 2222221 2333333333222 1 23455556666541 11 123 Q ss_pred ccccCcceeeeeeecccceeeeccceeeeeccccccccccccccccceeecccceecCCcceeEEeeEEEEecccEEecc Q lcl|NC_015569. 65 QPLLDFFETARLQETAQSAVPQVPGAGAVDQLTLVTPGTNYTPTTDGSETRSNQPTAPANSGVTGTGLTVNWGESRTVSG 144 (381) Q Consensus 65 ~~d~~~f~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ny~~~p~~~~v~~v~~~~~~~~~~~~~~ 144 (381) -.|-++|++|+|+||++|++.+|||+++|+||+||+.|+++.++..+.-+++= ..|+.....+++++..+++|..-+ T Consensus 74 ~~d~~v~avt~i~~t~~g~~~t~dg~a~Y~~~~d~v~Gi~~v~g~~~~~~~~~---~~~~~~g~~l~y~~~l~~y~~~~q 150 (310) T protein:vir:65 74 LSDSGVFAVTKIIRTNVGSAATMDGTAVYPWFTDFLLGLAGVNGGLGSGCSKF---YGPNAMGGDLGYFEQLMSYRATMQ 150 (310) T ss_pred eCCcceeeeehhhhccccccccccccccccccCceeeeeccccccccchhhhh---ccccccchhhhhhhHHHHHHHHHH Confidence 34668999999999999999999999999999999999987665432222111 334444566778888888888888 Q ss_pred ceEEEEEeeccccceecceeEEecCCCCcceeEcceeeeeEEeeecceeecCCeEEcCCCceeEEEEEEecCccccccCc Q lcl|NC_015569. 145 GLVSVSIYSAGEGYSVGDQVIISGGNNDAVFQVTAVKDQTPLYGVEIVEQQRNWITLPDDVIGVTKVFKVGSSSNLMTGG 224 (381) Q Consensus 145 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~eyhydg~~~~y~~~~~~~~~~~~nyi~Lpd~V~~VtkI~r~~~ss~~~~gg 224 (381) .|||=+ --|+|+.++. ..||. .++.- T Consensus 151 ~~ln~l----------------------pdy~yn~~~~-------------------------ql~i~-----~nf~~-- 176 (310) T protein:vir:65 151 NMLNPL----------------------PDYWYNSANG-------------------------QLKIT-----GNFRE-- 176 (310) T ss_pred HHhCcc----------------------cccccCCccc-------------------------eeeee-----eeccc-- Confidence 887644 2345544221 12221 11111 Q ss_pred eeeehhhhhhhhhhhcccCccccchHHHHHH-HHHHHHHHHHHhcCCcceeEccCCCeEEEEEccc-ccCCCEEEEEEEe Q lcl|NC_015569. 225 VIPAAFFTNPFLNGGFSNSGGMQFDLVSWYT-MQEYLNTLNFLLRPPVVFNFNQRTHRLHIHSNTT-LRLGDYLLMECSV 302 (381) Q Consensus 225 ~a~~~~ft~~~ln~~~~~~~~~g~~L~~y~~-~~qY~~~l~~~l~~~~~f~fN~~t~rL~i~~d~~-~~~gd~lviE~y~ 302 (381) ++|+-+.+ ++||.++++++++....++|+.++++++++.+|+ .....+.+++|++ T Consensus 177 -----------------------gd~ii~e~~~ks~le~~d~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (310) T protein:vir:65 177 -----------------------GDLIVVELYVKSYVDVPDMIGAVAGYAHAGGCSTAGGISAVYDNPTAGLSGIVAGMG 233 (310) T ss_pred -----------------------CcEEEEEEEeecccCchhhhhcccceeEEcccCCccccccccccchhhhceeeeecc Confidence 12333332 6999999999999999999999999999999994 5688999999999 Q ss_pred ccCC---ccc----cccccchHHHH-HHHHHHHHHHhHHHHHhcCCcCCCc-eeecHHHHHHHHHHHHHHHHHHHHhhcC Q lcl|NC_015569. 303 KPSP---DVY----PDIWNDMWLKK-YATALVKYQWGVNLTKHTDVKLPGG-ITLNGEMIYNEAKQEIAEIIQKFAMDWA 373 (381) Q Consensus 303 k~~P---d~~----~~vYNd~WlKd-YATALvK~~wGqNL~KfqG~qLPGG-VTlnG~~I~~EA~~Eie~LeEeL~~~~~ 373 (381) ..+| +.+ =+-|--..+|+ |.-.|+|-+ |.-| =-|+.|=|= +-=++++=++.-++|+ + -+.---. T Consensus 234 ~~~~~~~~~YNnrWvKdYaTAL~K~~wGqnL~K~q-G~qL--PGGVTlnG~~i~eeA~~E~e~LreEl---~-~~~pP~~ 306 (310) T protein:vir:65 234 PISENKQGAYNNRWVKDMATAFTKEVWGSIMAKHQ-GLQL--PGGVTVDGIRIIEEARADIEKLRQEL---E-LLDPPFG 306 (310) T ss_pred cCCCccccccchhHHHHHHHHHHHHHHHHHHHHhC-CccC--CCceeecHHHHHHHHHHHHHHHHHHH---H-hhCCCCC Confidence 7432 222 34456666665 455566655 2222 235555443 2223444445555544 2 2222112 Q ss_pred CCce Q lcl|NC_015569. 374 DPVL 377 (381) Q Consensus 374 ~Pp~ 377 (381) .-.+ T Consensus 307 i~~~ 310 (310) T protein:vir:65 307 ILMI 310 (310) T ss_pred eeeC Confidence 2222 No 25 >protein:vir:103004 Length: 268 # NCBI annotation: gp109 # Family: family:all:1103 # MgeID: mge:1583 # MgeName: Syn9 # Cross-refs: genbank:acc:YP_717776;genbank:gi:113200738;genbank:GeneID:4239008 Probab=98.91 E-value=5.5e-13 Score=87.81 Aligned_cols=195 Identities=9% Similarity=-0.013 Sum_probs=117.2 Q ss_pred cccEEeccceEEEEEeeccccc------eecceeEEecCCC-------------CcceeEcceeeeeEEeeecceeecCC Q lcl|NC_015569. 137 GESRTVSGGLVSVSIYSAGEGY------SVGDQVIISGGNN-------------DAVFQVTAVKDQTPLYGVEIVEQQRN 197 (381) Q Consensus 137 ~~~~~~~~~~f~~~~~~~~~~~------~~~~~~~~~~~~~-------------~~eyhydg~~~~y~~~~~~~~~~~~n 197 (381) |+.... .| . ++. -.|--||=--=+. =+||||||++|+|+++++++++. T Consensus 1 Ms~~~~-~s--------~-~eLkdyiLRrLGaPii~InVtd~Qi~DcId~Alelf~EyHydG~~k~y~~~~it~~~~--- 67 (268) T protein:vir:10 1 MSATRP-AS--------K-TELKNYALRRLGYPAIDINVCDEQLDDLVEEAIDYFQEYHYNGSYQSMMKIEVTDAIK--- 67 (268) T ss_pred CCCCCC-CC--------H-HHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhhccchhcceEEEEechHHh--- Confidence 222111 00 0 000 0111111000011 16999999999999999998874 Q ss_pred eEEcCCCceeEEEEEEecCccccccCceeeehhhhhhhhhhhcccCccccchHHHHHHHHHHHHHHHHHhcCCcceeEcc Q lcl|NC_015569. 198 WITLPDDVIGVTKVFKVGSSSNLMTGGVIPAAFFTNPFLNGGFSNSGGMQFDLVSWYTMQEYLNTLNFLLRPPVVFNFNQ 277 (381) Q Consensus 198 yi~Lpd~V~~VtkI~r~~~ss~~~~gg~a~~~~ft~~~ln~~~~~~~~~g~~L~~y~~~~qY~~~l~~~l~~~~~f~fN~ 277 (381) +.++..+++|.++++|+++|+. -..+.+|+ +.+|.+++||..++..+|+|.+++|+|+ T Consensus 68 -----------------~~g~~~t~~g~~~~~~~~~fi~----~pp~v~gv-~~vf~~~~~~~~~~~n~~~~~~q~~lnd 125 (268) T protein:vir:10 68 -----------------TAAQSTTQQGSTNWYENNNYVS----LPPGVLGV-NHVYTNIGASSVVPGNIFNIKYQIFLND 125 (268) T ss_pred -----------------hhhhhcccCcccccccccccee----cCCceeeh-hhhhhcccccccccccccccchhhhhcc Confidence 2556778899999999999974 23455556 6889999999999999999999999999 Q ss_pred CCCeE--EEEEcccccCCCEEEEEEEe-ccCCccc------------cccccchHHHHHHHHHHHHHHhHHHHHhcCCcC Q lcl|NC_015569. 278 RTHRL--HIHSNTTLRLGDYLLMECSV-KPSPDVY------------PDIWNDMWLKKYATALVKYQWGVNLTKHTDVKL 342 (381) Q Consensus 278 ~t~rL--~i~~d~~~~~gd~lviE~y~-k~~Pd~~------------~~vYNd~WlKdYATALvK~~wGqNL~KfqG~qL 342 (381) .++.+ .|.+. ++.+|+|..+.+. +..++.. +.-|..++.-+|. +++. ....= T Consensus 126 ~~~~~~g~il~y--~~~~~~l~~~~~~~~s~~~~~~~~~~~~~rly~d~d~~~~~~~~~~--~i~~---------~~~~d 192 (268) T protein:vir:10 126 IYAMTHGQILHY--FMTSQYLETLDWVTNSQANRRVKFNEHQARLYLDFDWDTLQAGDFI--MVDL---------TMRQD 192 (268) T ss_pred hhhhhHHhhhhh--hhccceeehhhhhhcccCccceEEEeeeceeEEeeccCCcccchhh--hhHh---------hcccC Confidence 99988 66665 5678888888774 4444431 0112333333333 2222 22223 Q ss_pred CCce--eecHHHHHHHHHHHHHHHHHHHHhhcCCCceeeeC Q lcl|NC_015569. 343 PGGI--TLNGEMIYNEAKQEIAEIIQKFAMDWADPVLDLVG 381 (381) Q Consensus 343 PGGV--TlnG~~I~~EA~~Eie~LeEeL~~~~~~Pp~~mmG 381 (381) |... --|-+=+-+=|..-.+++--+.+.++.... |-| T Consensus 193 P~~~~~~YNn~WvKdYatAL~K~~wGq~L~K~qG~q--LPG 231 (268) T protein:vir:10 193 PDEYTGMYNDAWLKDYVEALFQQQWGRNLSKYDGIQ--MLG 231 (268) T ss_pred CchhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCcc--CCC Confidence 3322 234555555666666666666555444311 123 No 26 >protein:vir:6889 Length: 308 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:140 # MgeName: RB69 # Cross-refs: genbank:acc:NP_861865;genbank:gi:32453656;genbank:GeneID:1494291 Probab=98.86 E-value=5.3e-13 Score=87.86 Aligned_cols=269 Identities=14% Similarity=0.088 Sum_probs=138.8 Q ss_pred CCCCCCC-----CHHHHHHHHHHhcCCceEEEeecHHHHHHHHHHHHHHhhhccccCcccceeEE----E---Eeccccc Q lcl|NC_015569. 1 MSIASPQ-----NRKEFKEYILHKLGKPVLEINVADEQIDLAINDAFQYFHEREHFNGTERVFYR----L---RVEQPLL 68 (381) Q Consensus 1 m~~~~~~-----s~~~lkd~ilrrLGaPvl~inv~d~Qi~d~I~~al~~f~Ey~H~dG~~~~~~~----~---~~~~~d~ 68 (381) +.+--|- +.+++-|-| +++++-=-|+-.+= -..+.-+-++. . .+.-+|. T Consensus 18 RrLGAPvi~InVtd~Qi~DcI------------------d~Alely~EyHydG-~~k~y~~~~i~~d~~~k~g~f~~~d~ 78 (308) T protein:vir:68 18 RRLGAPIVNVELTTDQIYDCI------------------SRALELYGEYHFDG-LNKGFHVFFVDDEEKYRHGVFDMRGS 78 (308) T ss_pred HhcCCceEEEecCHHHHHHHH------------------HHHHHHhhhhhccc-cccceEEEEeChhhhhccceeecCCc Confidence 2222221 223333332 33333222221111 11111111111 1 1223678 Q ss_pred CcceeeeeeecccceeeeccceeeeeccccccccccccccccceeecccceecCCcceeEEeeEEEEecccEEeccceEE Q lcl|NC_015569. 69 DFFETARLQETAQSAVPQVPGAGAVDQLTLVTPGTNYTPTTDGSETRSNQPTAPANSGVTGTGLTVNWGESRTVSGGLVS 148 (381) Q Consensus 69 ~~f~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ny~~~p~~~~v~~v~~~~~~~~~~~~~~~~f~ 148 (381) ++|++|+|+|++.|++.+|||+|+|+|++||+.|++|.++.-+. +-+|+ ..|+...+.++.++..|+++.+.+.||+ T Consensus 79 ~v~avT~i~rt~~gs~~t~dg~a~Y~~~~dfv~g~~g~~g~~~~-~~~~~--~g~n~~g~~lgy~~~~~~Y~~~l~dl~~ 155 (308) T protein:vir:68 79 NVFAVTRIIRTNVGSITSMDGNATYPWFTDFLLGMAGVSGGMGS-NCGKF--YGPNAFGADLGYYSQLVSYMGMLQDMIA 155 (308) T ss_pred cchhhhhhhhccccccccccccccccccCceeeeecccCccccc-ccchh--cccccccchhhhHHHHHHHHHHHHHhcc Confidence 99999999999999999999999999999999999988873221 11122 3456677888999999999999998875 Q ss_pred EEEeeccccceecceeEEecCCCCcceeEcceeeeeEEeeecceeecCCeEEcCCCceeEEEEEEecCccccccCceeee Q lcl|NC_015569. 149 VSIYSAGEGYSVGDQVIISGGNNDAVFQVTAVKDQTPLYGVEIVEQQRNWITLPDDVIGVTKVFKVGSSSNLMTGGVIPA 228 (381) Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~eyhydg~~~~y~~~~~~~~~~~~nyi~Lpd~V~~VtkI~r~~~ss~~~~gg~a~~ 228 (381) -. .= |-|+. +.+..+|+ .++..+.. T Consensus 156 p~-----~~-----------------~~~n~-------------------------~~~ql~i~-----~n~~~~d~--- 180 (308) T protein:vir:68 156 PL-----PD-----------------FWFNS-------------------------ANEQLKVM-----GNFRQKDV--- 180 (308) T ss_pred cc-----cc-----------------cccCC-------------------------cceeEEEe-----eeeccCce--- Confidence 21 11 11211 11112221 11111111 Q ss_pred hhhhhhhhhhhcccCccccchHHHHHHHHHHHHHHHHHhcCCcceeEccCCCeEEEEEcccccCCCEEEEEEE------- Q lcl|NC_015569. 229 AFFTNPFLNGGFSNSGGMQFDLVSWYTMQEYLNTLNFLLRPPVVFNFNQRTHRLHIHSNTTLRLGDYLLMECS------- 301 (381) Q Consensus 229 ~~ft~~~ln~~~~~~~~~g~~L~~y~~~~qY~~~l~~~l~~~~~f~fN~~t~rL~i~~d~~~~~gd~lviE~y------- 301 (381) +.-+++++||+++.+++++. ++|+.+..||+++.++.....+.++++|| T Consensus 181 ---------------------~i~e~~~ks~le~~~~v~n~---~~y~~~~~rl~~~~~~~~~~~~~~l~~~~~~~~p~~ 236 (308) T protein:vir:68 181 ---------------------IIVESYVRSYIETHKMVGNT---VGYGQVGPRDSWSISERYDNPDHNLVGRRVGEDPAT 236 (308) T ss_pred ---------------------EEEEEeeecccccchhhccc---eeeeeecccccCccccccccchhhheeeeeccCCCc Confidence 22366799999999999987 78999999999999886656678888996 Q ss_pred -eccCCccccccccchHHHH-HHHHHHHHHHhHHHHHhcCCcCCCc-eeecHHHHHHHHHHHHHHHHHHHHhhcCCCce Q lcl|NC_015569. 302 -VKPSPDVYPDIWNDMWLKK-YATALVKYQWGVNLTKHTDVKLPGG-ITLNGEMIYNEAKQEIAEIIQKFAMDWADPVL 377 (381) Q Consensus 302 -~k~~Pd~~~~vYNd~WlKd-YATALvK~~wGqNL~KfqG~qLPGG-VTlnG~~I~~EA~~Eie~LeEeL~~~~~~Pp~ 377 (381) ...+=+..=+-|--..+|+ |.-.|+|-+ |.-| =-|+.|=|= +-=++++=++.-++|++-+- --...-.+ T Consensus 237 ~~~~YNnrWvKdYaTAL~K~~wGqnL~K~q-G~qL--PGGvTlnG~~i~eeA~~E~e~LreEl~~~~----pP~~~i~g 308 (308) T protein:vir:68 237 KQGAYNNRWVKDYASALAKELNGQILAKHQ-GMML--PGGVTVDGVRLIEEARLEKEALREELYLLD----PPAGILVG 308 (308) T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHhC-CccC--CCceeecHHHHHHHHHHHHHHHHHHHhhcc----CCCceeeC Confidence 2222222222233333332 222233332 1111 112222222 11122222222333322111 10010000 No 27 >protein:vir:100534 Length: 314 # NCBI annotation: gp13 head completion protein # Family: family:all:1103 # MgeID: mge:1488 # MgeName: 25 # Cross-refs: genbank:acc:YP_656375;genbank:gi:109290126;genbank:GeneID:4156512 Probab=98.32 E-value=7.8e-11 Score=76.01 Aligned_cols=257 Identities=14% Similarity=0.118 Sum_probs=122.3 Q ss_pred CCCCCCC-----CHHHHHHHHHHhc---C--------CceEEEeecHHHHHHHHHHHHHHhhhccccCcccceeEEEEec Q lcl|NC_015569. 1 MSIASPQ-----NRKEFKEYILHKL---G--------KPVLEINVADEQIDLAINDAFQYFHEREHFNGTERVFYRLRVE 64 (381) Q Consensus 1 m~~~~~~-----s~~~lkd~ilrrL---G--------aPvl~inv~d~Qi~d~I~~al~~f~Ey~H~dG~~~~~~~~~~~ 64 (381) +.+--|- +.+++-|-|-|-| + .--+.+.|+|||+.+ | + +.+ T Consensus 17 RrLGAPvi~InVtddQI~DcId~ALqlf~EyHyDG~~k~yl~~~ite~~~k~----------------g----~--~d~- 73 (314) T protein:vir:10 17 RRLGAPIVHVEVTEQQVFDCISRALELYGEYHYDGFHKTYATVVLTEEQAKT----------------G----V--ISF- 73 (314) T ss_pred HhcCCceEEEEcCHHHHHHHHHHHHHHhhhhcccccccceEEEEechhhhcC----------------C----E--Eee- Confidence 2222221 2233333332221 1 123444555554321 1 1 122 Q ss_pred ccccCcceeeeeeecccceeeeccceeeeeccccccccccccccccceeecccceecCCcceeEEeeEEEEecccEEecc Q lcl|NC_015569. 65 QPLLDFFETARLQETAQSAVPQVPGAGAVDQLTLVTPGTNYTPTTDGSETRSNQPTAPANSGVTGTGLTVNWGESRTVSG 144 (381) Q Consensus 65 ~~d~~~f~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ny~~~p~~~~v~~v~~~~~~~~~~~~~~ 144 (381) .+.++|++|+|+|++.++..+|+|+|+|+||+||+.|+++.++..+..+ +.|+...+..++++..|.+|.+.+ T Consensus 74 -~~~~v~avt~i~rt~~~~~~~~~g~a~Y~~~~d~~lG~~~~~~~~~~~~------~~pn~fg~~~~yf~~~m~y~~ml~ 146 (314) T protein:vir:10 74 -AGGNVFAVTQVIRTNIGSIITMDGTAVYPWFTDFVMGMTGASIGGQCRW------YGPNAFGADLGYFTQLMSYRDMMG 146 (314) T ss_pred -CCccceehhhhhhcccccccccCccccccccCceeeeecccccccccce------eccccccchhHHHHHHHHHHHHHH Confidence 2467899999999999999999999999999999999999998766433 555766677788999999999999 Q ss_pred ceEEEEEeeccccceecceeEEecCCCCcceeEcceeeeeEEeeecceeecCCeEEcCC-CceeEEEEEEecCccccccC Q lcl|NC_015569. 145 GLVSVSIYSAGEGYSVGDQVIISGGNNDAVFQVTAVKDQTPLYGVEIVEQQRNWITLPD-DVIGVTKVFKVGSSSNLMTG 223 (381) Q Consensus 145 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~eyhydg~~~~y~~~~~~~~~~~~nyi~Lpd-~V~~VtkI~r~~~ss~~~~g 223 (381) +||+ +||| --..+++.+++. ++ T Consensus 147 d~~~---------------------------------------------------pl~d~~~n~~~~~l~i~--~n---- 169 (314) T protein:vir:10 147 DMLS---------------------------------------------------PLPDFFFNSTTEMMRVA--GK---- 169 (314) T ss_pred hhhc---------------------------------------------------ccccccccCCcceEEEe--ec---- Confidence 9987 1222 111122222210 00 Q ss_pred ceeeehhhhhhhhhhhcccCccccchHHHHHHHHHHHHHHHHHhcCCcceeEccCCCeEEEEEcccccCCCEEEEEEEe- Q lcl|NC_015569. 224 GVIPAAFFTNPFLNGGFSNSGGMQFDLVSWYTMQEYLNTLNFLLRPPVVFNFNQRTHRLHIHSNTTLRLGDYLLMECSV- 302 (381) Q Consensus 224 g~a~~~~ft~~~ln~~~~~~~~~g~~L~~y~~~~qY~~~l~~~l~~~~~f~fN~~t~rL~i~~d~~~~~gd~lviE~y~- 302 (381) +. ..||+.|.+..||.++++++++....++|....+..+ +++.++.++.+|++ T Consensus 170 ------------------f~---~~Dll~~e~~~k~~~~~d~~~~~~~~~~~~~~~g~~~-----~~~~d~~~~~~~~~~ 223 (314) T protein:vir:10 170 ------------------LQ---KGDLLVFEVYCKSYANVDSMLSGVDSTLSGTSAGYGF-----AMSDDDSVPSVAQKY 223 (314) T ss_pred ------------------cc---CCcEEEEEEEeccccccchhccccccccceeeeecee-----cccccccchhhhhhh Confidence 00 1245555666666666666665444444443333221 12222222222221 Q ss_pred ---------------------ccCCccccccccchHHHH-HHHHHHHHHHhHHHHHhcCCcCCCc-eeecHHHHHHHHHH Q lcl|NC_015569. 303 ---------------------KPSPDVYPDIWNDMWLKK-YATALVKYQWGVNLTKHTDVKLPGG-ITLNGEMIYNEAKQ 359 (381) Q Consensus 303 ---------------------k~~Pd~~~~vYNd~WlKd-YATALvK~~wGqNL~KfqG~qLPGG-VTlnG~~I~~EA~~ 359 (381) -.+=+-.=+-|--..+|+ |.-.|+|-+- .-| =-|+.|=|= +-=++++=++.-++ T Consensus 224 ~nP~~~~~~~~~g~~~~~~~~~~yNnrWvKdYaTALvK~~wGqnL~K~qG-~qL--PGGVTldG~~l~eea~~E~e~Lre 300 (314) T protein:vir:10 224 ANPNMSHGQIYAGQSNGMSKDNSYNNRWVKDMATAFVKELNGQVLAKHQG-MQL--PGGVTIDGIRLIEEARIDIDKLRQ 300 (314) T ss_pred cCcccccceeeeccccccccccccchhhHHHHHHHHHHHHHHHHHHHhCC-ccc--CCceeecHHHHHHHHHHHHHHHHH Confidence 011111112233333333 3333443321 111 123333222 11122222222222 Q ss_pred HHHHHHHHHHhhcCCCce Q lcl|NC_015569. 360 EIAEIIQKFAMDWADPVL 377 (381) Q Consensus 360 Eie~LeEeL~~~~~~Pp~ 377 (381) |++-+ .++- +.-.+ T Consensus 301 el~~~-~~~p---p~~mg 314 (314) T protein:vir:10 301 ELELL-DGPP---PIIMG 314 (314) T ss_pred HHhhc-cCCC---ccccC Confidence 22221 1111 11111 No 28 >protein:vir:5657 Length: 307 # NCBI annotation: gp13 # Family: family:all:1103 # MgeID: mge:119 # MgeName: KVP40 # Cross-refs: genbank:acc:NP_899596;genbank:gi:34419583;genbank:GeneID:2545698 Probab=98.30 E-value=1.7e-09 Score=68.70 Aligned_cols=233 Identities=11% Similarity=0.076 Sum_probs=134.7 Q ss_pred CCCCCCC-----CHHHHHHHHHHhc---C--------CceEEEeecHHHHHHHHHHHHHHhhhccccCcccceeEEEEec Q lcl|NC_015569. 1 MSIASPQ-----NRKEFKEYILHKL---G--------KPVLEINVADEQIDLAINDAFQYFHEREHFNGTERVFYRLRVE 64 (381) Q Consensus 1 m~~~~~~-----s~~~lkd~ilrrL---G--------aPvl~inv~d~Qi~d~I~~al~~f~Ey~H~dG~~~~~~~~~~~ 64 (381) +.+--|- +.+++-|-|-|-| + .--+.+.|+|||+.+ .+ +.+ T Consensus 18 RrLGAPvi~InVtd~Qi~DcId~Alqly~EyHydG~~k~y~~~~vte~~~~~--------------------G~--~d~- 74 (307) T protein:vir:56 18 RRLGAPIVNVEVSEDQVYDCISRALELYIEYHPDGVNKTYSIISLSEEQAQT--------------------GI--IDL- 74 (307) T ss_pred HhcCCceEEEecCHHHHHHHHHHHHHHhhhhhccccccceEEEEechhhccC--------------------Ce--Eec- Confidence 2222221 2233333332222 1 223445555554321 11 223 Q ss_pred ccccCcceeeeeeecccceeeeccceeeeeccccccccccccccccceeecccceecCC-cceeEEeeEEEEecccEEec Q lcl|NC_015569. 65 QPLLDFFETARLQETAQSAVPQVPGAGAVDQLTLVTPGTNYTPTTDGSETRSNQPTAPA-NSGVTGTGLTVNWGESRTVS 143 (381) Q Consensus 65 ~~d~~~f~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ny~~~p~-~~~v~~v~~~~~~~~~~~~~ 143 (381) ++ ++|++|+|+|++ ++..+|||+|+|+||+||++|++|.++.++.. .+|+ ..+...+++++..++++.+. T Consensus 75 -~~-~v~avt~Iirt~-~s~~t~dg~aty~w~tdfi~~~~gv~g~~~~~------~~~~~~~~~~~l~y~~~~~sy~~~l 145 (307) T protein:vir:56 75 -DI-PATAITKILRAE-SSFFTMDGNATYSWFSDFLQGLAGGPGAGSCN------SYHQGMLGQGSLSDYWNLMSYKNML 145 (307) T ss_pred -Cc-chhhhhhhhccC-cccccCCCccccCccccceeccccccccccee------eecccccchhhhhHHHHHHHHHHHH Confidence 23 799999999999 99999999999999999999999999885544 4775 55566778899999999998 Q ss_pred cceEEEEEeeccccceecceeEEecCCCCcceeEcceeeeeEEeeecceeecCCeEEcCCCceeEEEEEEecCccccccC Q lcl|NC_015569. 144 GGLVSVSIYSAGEGYSVGDQVIISGGNNDAVFQVTAVKDQTPLYGVEIVEQQRNWITLPDDVIGVTKVFKVGSSSNLMTG 223 (381) Q Consensus 144 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~eyhydg~~~~y~~~~~~~~~~~~nyi~Lpd~V~~VtkI~r~~~ss~~~~g 223 (381) ++||+-.- -|-|++.+..- ++ ..+. T Consensus 146 ~d~~~p~~----------------------d~~yn~~~~qL-------------------------~~-----~~n~--- 170 (307) T protein:vir:56 146 TDLLSPEY----------------------DYWYNGVNKQL-------------------------RI-----NANL--- 170 (307) T ss_pred Hhhccccc----------------------ceeecCcceee-------------------------ee-----eeee--- Confidence 88886431 23343322111 01 0000 Q ss_pred ceeeehhhhhhhhhhhcccCccccchHHHHHHHHHHHHHHHHHhcCCcceeEccCC-CeEEEEEccc-ccCCCEEEEEE- Q lcl|NC_015569. 224 GVIPAAFFTNPFLNGGFSNSGGMQFDLVSWYTMQEYLNTLNFLLRPPVVFNFNQRT-HRLHIHSNTT-LRLGDYLLMEC- 300 (381) Q Consensus 224 g~a~~~~ft~~~ln~~~~~~~~~g~~L~~y~~~~qY~~~l~~~l~~~~~f~fN~~t-~rL~i~~d~~-~~~gd~lviE~- 300 (381) ..+++.++..|.+.+.+++.....+++|.+. +||+++.+|. +..+.+++++| T Consensus 171 -------------------------~~g~~~ive~~~~s~~~~~~~~~~~~~~~~~~~r~y~~~~~~~~~~n~~~~~~~~ 225 (307) T protein:vir:56 171 -------------------------SAGELIVVEAFVPSALLVSESATGIIGNKAATIGSYEDTTAQERWDDPYSILRQN 225 (307) T ss_pred -------------------------ccCCeEEEEeeccchhhhhhhhhhhcceeeecCcccccCCchhhccCcceeeecc Confidence 1123335556666666677777778888875 6999998874 56788877654 Q ss_pred ---Eec-------cCCccccccc---------------------------cchHHHHHHHHHHHHHHhHHHHHhcCCcCC Q lcl|NC_015569. 301 ---SVK-------PSPDVYPDIW---------------------------NDMWLKKYATALVKYQWGVNLTKHTDVKLP 343 (381) Q Consensus 301 ---y~k-------~~Pd~~~~vY---------------------------Nd~WlKdYATALvK~~wGqNL~KfqG~qLP 343 (381) -.. .+=+..=+-| |.+=+.+=|.+.+.+.-=+-+. +.+| T Consensus 226 ~~~~dp~~~t~~~~YNn~WvKdYaTALvK~~wGqnL~K~qG~qLPGGVTlnG~~i~eeA~~E~e~LreEl~~----~~~P 301 (307) T protein:vir:56 226 NTIGNPNQFAEQNAYSVRWVKDMATAMTKQMNGVILKKHQGLQLPGGITIDGKEIYDEATQEIERLREELMS----LTVP 301 (307) T ss_pred ccccCCcccccccccchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHhh----ccCC Confidence 211 1112111223 4444555555554444433321 4455 Q ss_pred Cceeec Q lcl|NC_015569. 344 GGITLN 349 (381) Q Consensus 344 GGVTln 349 (381) -++-+- T Consensus 302 ~~~liG 307 (307) T protein:vir:56 302 LGVFMG 307 (307) T ss_pred chhhcC Confidence 554333 No 29 >protein:vir:103451 Length: 309 # NCBI annotation: neck protein # Family: family:all:1103 # MgeID: mge:1542 # MgeName: RB32 # Cross-refs: genbank:acc:YP_803103;genbank:gi:116326383;genbank:GeneID:4405480 Probab=98.15 E-value=1.6e-09 Score=68.86 Aligned_cols=265 Identities=13% Similarity=0.092 Sum_probs=136.5 Q ss_pred CCCCCCC-----CHHHHHHHHHHhcCCceEEEeecHHHHHHHHHHHHHH--------hhhccccCcccceeEEEEecccc Q lcl|NC_015569. 1 MSIASPQ-----NRKEFKEYILHKLGKPVLEINVADEQIDLAINDAFQY--------FHEREHFNGTERVFYRLRVEQPL 67 (381) Q Consensus 1 m~~~~~~-----s~~~lkd~ilrrLGaPvl~inv~d~Qi~d~I~~al~~--------f~Ey~H~dG~~~~~~~~~~~~~d 67 (381) +.+--|- +.+++-|-| +++|+-=-|+ |.-+ |.+--+..+.+=.+.-.+ T Consensus 18 RrLGAPvi~InVtd~Qi~DcI------------------d~Alqly~EyHydG~~k~y~~~-~i~~de~~~~~gv~d~~~ 78 (309) T protein:vir:10 18 RRLGAPIINVELTPDQIYDCI------------------QRALELYGEYHFDGLNKGFHVF-YVGDDEEKYKTGVFDLRG 78 (309) T ss_pred HhcCCceEEEecCHHHHHHHH------------------HHHHHHhhhhhccccccceEEE-EeCchhhhhccceeeccC Confidence 2222221 233333333 2233222221 1111 111112222222233346 Q ss_pred cCcceeeeeeecccceeeeccceeeeeccccccccccccccccceeecccceecCCcceeEEeeEEEEecccEEeccceE Q lcl|NC_015569. 68 LDFFETARLQETAQSAVPQVPGAGAVDQLTLVTPGTNYTPTTDGSETRSNQPTAPANSGVTGTGLTVNWGESRTVSGGLV 147 (381) Q Consensus 68 ~~~f~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ny~~~p~~~~v~~v~~~~~~~~~~~~~~~~f 147 (381) .++|++|+|+|++.|+..+|+|+|+|+|++||+.|+++.+++. .++++-..||+...+.+++++..++++-..+.|| T Consensus 79 ~~v~avt~i~~t~~gs~~s~dg~aty~w~~dfi~g~~~v~g~~---~~s~~~~~~pn~~g~dl~y~~~l~sy~~m~~d~l 155 (309) T protein:vir:10 79 SNVFAVTRILRTNVGSITSMDGNATYPWFTDFLLGMAGINGGM---GTSCNRFYGPNAFGADLGYFTQLTSYMGMMQDML 155 (309) T ss_pred cchhhhhhhhhcccccccccCcccccccccchhhhhhhhhccc---ccccccccCcccceehhHHHHhHHHHHHHHHHHh Confidence 7899999999999999999999999999999999999865432 2344455888888888899999888887777777 Q ss_pred EEEEeeccccceecceeEEecCCCCcceeEcceeeeeEEeeecceeecCCeEEcCCCceeEEEEEEecCccccccCceee Q lcl|NC_015569. 148 SVSIYSAGEGYSVGDQVIISGGNNDAVFQVTAVKDQTPLYGVEIVEQQRNWITLPDDVIGVTKVFKVGSSSNLMTGGVIP 227 (381) Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~eyhydg~~~~y~~~~~~~~~~~~nyi~Lpd~V~~VtkI~r~~~ss~~~~gg~a~ 227 (381) +.. --|+|+..++..... .++..++. T Consensus 156 ~~~----------------------pd~~yN~~~~~l~i~------------------------------gn~~~~~~-- 181 (309) T protein:vir:10 156 SPI----------------------PDFWFNSANEQLKVM------------------------------GNFQKYDL-- 181 (309) T ss_pred ccc----------------------CCceeccccceEEEE------------------------------EeeecCce-- Confidence 642 123444332211110 00111111 Q ss_pred ehhhhhhhhhhhcccCccccchHHHHHHHHHHHHHHHHHhcCCcceeEccCCCeEEEEEcccccCCCEEEEEE------- Q lcl|NC_015569. 228 AAFFTNPFLNGGFSNSGGMQFDLVSWYTMQEYLNTLNFLLRPPVVFNFNQRTHRLHIHSNTTLRLGDYLLMEC------- 300 (381) Q Consensus 228 ~~~ft~~~ln~~~~~~~~~g~~L~~y~~~~qY~~~l~~~l~~~~~f~fN~~t~rL~i~~d~~~~~gd~lviE~------- 300 (381) +..+.++++|++ ++++.+.-..++|+.+++++++...|. ..+.++++| T Consensus 182 ----------------------i~~e~~~k~y~d-~~~~v~~~~g~~~~~~~d~~~~~~~~~--~~~~~l~~~~r~~dp~ 236 (309) T protein:vir:10 182 ----------------------IIVESWTKSYID-TNKMVGNTVGYGTVGPQDSWSLSERYN--NPDHNLVGRVVGQDPD 236 (309) T ss_pred ----------------------EEEEEecchhcc-cchhhccccccccccCccccccccccc--ccchhhhcceeccCCc Confidence 223334566663 444445556777778888888877653 357888888 Q ss_pred -----EeccCCccccccccchHHHH-HHHHHHHHHHhHHHHHhcCCcCCCc-eeecHHHHHHHHHHHHHHHHHHHHhhcC Q lcl|NC_015569. 301 -----SVKPSPDVYPDIWNDMWLKK-YATALVKYQWGVNLTKHTDVKLPGG-ITLNGEMIYNEAKQEIAEIIQKFAMDWA 373 (381) Q Consensus 301 -----y~k~~Pd~~~~vYNd~WlKd-YATALvK~~wGqNL~KfqG~qLPGG-VTlnG~~I~~EA~~Eie~LeEeL~~~~~ 373 (381) |.-.-.-+ |--..+|+ |.-.|+|-+ |.-| =-|+.|=|= +-=++++=++.-++|+..|..=+--.=. T Consensus 237 ~~~~~YNn~WvKd----YaTAL~K~~wGqnL~K~q-G~qL--PGGVTlnG~~i~eeA~~E~e~LreeL~~l~pP~~~i~G 309 (309) T protein:vir:10 237 VKQGAYNNRWVKD----YATALAKELNGQILARHQ-GMML--PGGVTIDGQRLIEEARLEKEALREELYLLDPPFGIFVG 309 (309) T ss_pred chhhhcchhHHHH----HHHHHHHHHHHHHHHHhC-CccC--CCceeecHHHHHHHHHHHHHHHHHHHHhccCCcccccC Confidence 54444333 33334443 333444443 1111 123333332 1223333333334443322111111111 No 30 >protein:vir:7198 Length: 309 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:142 # MgeName: T4 # Cross-refs: genbank:acc:NP_049772;genbank:gi:9632587;genbank:GeneID:1258809 Probab=97.90 E-value=4.7e-09 Score=66.25 Aligned_cols=269 Identities=14% Similarity=0.100 Sum_probs=131.4 Q ss_pred CCCCCCC-----CHHHHHHHHHHhcCCceEEEeecHHHHHHHHHHHHHH--------hhhccccCcccceeEEEEecccc Q lcl|NC_015569. 1 MSIASPQ-----NRKEFKEYILHKLGKPVLEINVADEQIDLAINDAFQY--------FHEREHFNGTERVFYRLRVEQPL 67 (381) Q Consensus 1 m~~~~~~-----s~~~lkd~ilrrLGaPvl~inv~d~Qi~d~I~~al~~--------f~Ey~H~dG~~~~~~~~~~~~~d 67 (381) +.+--|- +.+++-|-|- ++|+-=-|+ |.-+ |.+--++.+.+=.+.--+ T Consensus 18 RrLGAPvi~InVtd~Qi~DcId------------------~Alqly~EyHydG~~k~yl~~-~i~~de~~~~~gv~d~~~ 78 (309) T protein:vir:71 18 RRLGAPIINVELTPDQIYDCIQ------------------RALELYGEYHFDGLNKGFHVF-YVGDDEERYKTGVFDLRG 78 (309) T ss_pred HhcCCceEEEecCHHHHHHHHH------------------HHHHHhhhhhccccccceEEE-EeCchhhhhcccceecCC Confidence 2222221 2333333332 222222221 1111 111112222222222235 Q ss_pred cCcceeeeeeecccceeeeccceeeeeccccccccccccccccceeecccceecCCcceeEEeeEEEEecccEEeccceE Q lcl|NC_015569. 68 LDFFETARLQETAQSAVPQVPGAGAVDQLTLVTPGTNYTPTTDGSETRSNQPTAPANSGVTGTGLTVNWGESRTVSGGLV 147 (381) Q Consensus 68 ~~~f~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ny~~~p~~~~v~~v~~~~~~~~~~~~~~~~f 147 (381) -++||||+|+||+.|++.+|+|+|+|+|++||+.|++|.+++ ..++++-..||+...+.+++++..++++-..+.|| T Consensus 79 ~~v~aVt~i~~t~~gs~~t~dg~aty~w~~dfi~g~~gi~g~---~~~s~~~~~~pn~fg~dl~Y~~~l~sy~~m~qd~l 155 (309) T protein:vir:71 79 SNVFAVTRILRTNIGSITSMDGNATYPWFTDFLLGMAGINGG---MGTSCNRFYGPNAFGADLGYFTQLTSYMGMMQDML 155 (309) T ss_pred cchhhhhhhhcCCcccccccCcccccccccchhhhhhhhhcc---cccccccccccchhhhhhHHHHHHHHHHHHHHHHh Confidence 578999999999999999999999999999999999885532 12333444788888888899999999888888888 Q ss_pred EEEEeeccccceecceeEEecCCCCcceeEcceeeeeEEeeecceeecCCeEEcCCCceeEEEEEEecCccccccCceee Q lcl|NC_015569. 148 SVSIYSAGEGYSVGDQVIISGGNNDAVFQVTAVKDQTPLYGVEIVEQQRNWITLPDDVIGVTKVFKVGSSSNLMTGGVIP 227 (381) Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~eyhydg~~~~y~~~~~~~~~~~~nyi~Lpd~V~~VtkI~r~~~ss~~~~gg~a~ 227 (381) +.. --|+|+..++.. +|. .++..++. T Consensus 156 ~~~----------------------pd~~~N~~~~~l-------------------------~i~-----gnf~~~~~-- 181 (309) T protein:vir:71 156 SPI----------------------PDFWFNSANEQL-------------------------KVM-----GNFQKYDL-- 181 (309) T ss_pred ccc----------------------CCcccccccceE-------------------------EEE-----Eeeeecce-- Confidence 754 123333322111 110 00111111 Q ss_pred ehhhhhhhhhhhcccCccccchHHHHHHHHHHHHHHHHHhcCCcceeEccCCCeEEEEEcccccCCCEEEEEEEe----c Q lcl|NC_015569. 228 AAFFTNPFLNGGFSNSGGMQFDLVSWYTMQEYLNTLNFLLRPPVVFNFNQRTHRLHIHSNTTLRLGDYLLMECSV----K 303 (381) Q Consensus 228 ~~~ft~~~ln~~~~~~~~~g~~L~~y~~~~qY~~~l~~~l~~~~~f~fN~~t~rL~i~~d~~~~~gd~lviE~y~----k 303 (381) +..+.++++|.+ ++++.+.-..|+|+.+++++++...|. ..+.++++|+| - T Consensus 182 ----------------------i~~e~~~k~y~d-~~~~v~~~~g~~~~~~~d~~~~~~~y~--~~~~~l~~~~r~~dp~ 236 (309) T protein:vir:71 182 ----------------------IIVESWTKSYID-TNKMVGNTVGYGTVGPQDSWSLSERYN--NPDHNLVGRVVGQDPN 236 (309) T ss_pred ----------------------EEEEEeeccccc-cchhhhcchhhccccccccccceehhc--ccchhhhcceeccCCc Confidence 122333455553 334444456677777788888877763 35778888876 1 Q ss_pred ----cCCccccccccchHHHH-HHHHHHHHHHhHHHHHhcCCcCCCc-eeecHHHHHHHHHHHHHHHHHHHHhhcCCCce Q lcl|NC_015569. 304 ----PSPDVYPDIWNDMWLKK-YATALVKYQWGVNLTKHTDVKLPGG-ITLNGEMIYNEAKQEIAEIIQKFAMDWADPVL 377 (381) Q Consensus 304 ----~~Pd~~~~vYNd~WlKd-YATALvK~~wGqNL~KfqG~qLPGG-VTlnG~~I~~EA~~Eie~LeEeL~~~~~~Pp~ 377 (381) .+=+..=+-|--..+|+ |.-.|+|-+ |.-| =-|+.|=|= +-=++++=++.-++|+.-+- .-...-.+ T Consensus 237 ~~~~~YNn~WvKdYaTAL~K~~wGqnL~K~q-G~qL--PGGVTlnG~~i~eeA~~E~e~LreeL~~~~----pP~d~i~g 309 (309) T protein:vir:71 237 VKQGAYNNRWVKDYATALAKELNGQILARHQ-GMML--PGGVTIDGQRLIEEARLEKEALREELYLLD----PPFGILVG 309 (309) T ss_pred chhhhcchhHHHHHHHHHHHHHHHHHHHHhC-CccC--CCceeecHHHHHHHHHHHHHHHHHHHhhcc----CCCcceeC Confidence 11111112233334443 333344433 1111 123333322 11123333333333333211 11111111 No 31 >protein:vir:107900 Length: 311 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:2002 # MgeName: JS98 # Cross-refs: genbank:acc:YP_001595289;genbank:gi:161622595;genbank:GeneID:5783619 Probab=97.39 E-value=1.9e-08 Score=62.93 Aligned_cols=265 Identities=12% Similarity=0.105 Sum_probs=132.3 Q ss_pred CCCCCCC-----CHHHHHHHHHHhc---C--------CceEEEeecHHHHHHHHHHHHHHhhhccccCcccceeEEEEec Q lcl|NC_015569. 1 MSIASPQ-----NRKEFKEYILHKL---G--------KPVLEINVADEQIDLAINDAFQYFHEREHFNGTERVFYRLRVE 64 (381) Q Consensus 1 m~~~~~~-----s~~~lkd~ilrrL---G--------aPvl~inv~d~Qi~d~I~~al~~f~Ey~H~dG~~~~~~~~~~~ 64 (381) +.+--|- +.+++-|-|-|-| + .--+.+.|+++.++ .|. +| .+. T Consensus 17 RrLGAPvi~InVtd~Qi~DcId~ALely~EyHydG~~k~y~~~~it~dd~~--------~~~-----~g--------~~d 75 (311) T protein:vir:10 17 RRLGAPITNIEVTTDQVYDCIQRALELYGEYHYNGYNKGYQAFYIGHDDEE--------KFR-----NG--------VFD 75 (311) T ss_pred HhcCCceEEEecCHHHHHHHHHHHHHHhhhhhccccccceEEEEecchhhh--------hcc-----CC--------cee Confidence 2222221 2333333332222 1 12233333333221 111 01 112 Q ss_pred ccccCcceeeeeeecccceeeeccceeeeeccccccccccccccccceeecccceecCCcceeEEeeEEEEecccEEecc Q lcl|NC_015569. 65 QPLLDFFETARLQETAQSAVPQVPGAGAVDQLTLVTPGTNYTPTTDGSETRSNQPTAPANSGVTGTGLTVNWGESRTVSG 144 (381) Q Consensus 65 ~~d~~~f~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ny~~~p~~~~v~~v~~~~~~~~~~~~~~ 144 (381) -.+.++|++|+|+|++.|++.+|+|+|+|+||+||+.|+++-+++....+ |+ ..|+...+.+++++..++++.+.+ T Consensus 76 ~~~~~v~avt~i~~t~~gs~~s~dg~atY~w~~d~v~G~~~v~g~~~s~~--~~--~g~n~fg~~lgyf~~l~~Y~~~l~ 151 (311) T protein:vir:10 76 LKGRNIFAVTQILRTNVGSLTSMDGQATYPWFTDFVLGLAGINGGLGSSC--NS--FGPNAFGADLGYFTQLMQYRSMMQ 151 (311) T ss_pred cCCcchhHHHHhhccccccccCCCCcccccccCchhhhhhhhhccccccc--cc--cccccccchHHHHHHHHHHHHHHH Confidence 23567899999999999999999999999999999999998544433222 21 445655566677777778877777 Q ss_pred ceEEEEEeeccccceecceeEEecCCCCcceeEcceeeeeEEeeecceeecCCeEEcCCCceeEEEEEEecCccccccCc Q lcl|NC_015569. 145 GLVSVSIYSAGEGYSVGDQVIISGGNNDAVFQVTAVKDQTPLYGVEIVEQQRNWITLPDDVIGVTKVFKVGSSSNLMTGG 224 (381) Q Consensus 145 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~eyhydg~~~~y~~~~~~~~~~~~nyi~Lpd~V~~VtkI~r~~~ss~~~~gg 224 (381) .|||=- --|-|++++ +..|| .+++. T Consensus 152 dl~~p~----------------------~d~~yn~~t-------------------------~~l~i-----~gnf~--- 176 (311) T protein:vir:10 152 DLLVPL----------------------PDYWYNDAT-------------------------EQLKV-----MGNFV--- 176 (311) T ss_pred Hhhccc----------------------ccccccccc-------------------------ceEEE-----eeccc--- Confidence 776411 012222211 11111 01111 Q ss_pred eeeehhhhhhhhhhhcccCccccchHHHHHHHHHHHHHHHHHhcCCcce---eEccCCCeEEEEEcccccCCCEEEEEEE Q lcl|NC_015569. 225 VIPAAFFTNPFLNGGFSNSGGMQFDLVSWYTMQEYLNTLNFLLRPPVVF---NFNQRTHRLHIHSNTTLRLGDYLLMECS 301 (381) Q Consensus 225 ~a~~~~ft~~~ln~~~~~~~~~g~~L~~y~~~~qY~~~l~~~l~~~~~f---~fN~~t~rL~i~~d~~~~~gd~lviE~y 301 (381) .++++.+.+..++.++++.+.+....+ .++.++++++++.+|. +-..+++|| T Consensus 177 ----------------------~g~~i~~e~~~k~~~~v~~~v~~~~~~~~~~~~~~~d~~~~~~~~~---n~~~~l~~~ 231 (311) T protein:vir:10 177 ----------------------KGDFIVIEVYTRSFNGVDSMVGNTAGYGYASGGCDENEWSPGAIWD---NPARRISGM 231 (311) T ss_pred ----------------------cccEEEEEEeccccccchhhhhhhhhhhcccccccccccccchhhc---ccccccccc Confidence 123444444555566666666555544 4677889999988874 456778888 Q ss_pred ---------eccCCccccccccchHHHH-HHHHHHHHHHhHHHHHhcCCcCCCc-eeecHHHHHHHHHHHHHHHHHHHHh Q lcl|NC_015569. 302 ---------VKPSPDVYPDIWNDMWLKK-YATALVKYQWGVNLTKHTDVKLPGG-ITLNGEMIYNEAKQEIAEIIQKFAM 370 (381) Q Consensus 302 ---------~k~~Pd~~~~vYNd~WlKd-YATALvK~~wGqNL~KfqG~qLPGG-VTlnG~~I~~EA~~Eie~LeEeL~~ 370 (381) .-.+=+..=+-|--..+|+ |.-.|+|-+ |.-| =-|+.|=|= +-=++++=++.-++|+..++--... T Consensus 232 rag~dp~~~~~~YNnrWvKdYaTALvK~~wGq~L~K~q-G~qL--PGGvTlnG~~i~eeA~~E~e~LreEl~~~~~Pp~~ 308 (311) T protein:vir:10 232 RAGEDLGLQDGAYNNRWVKDYATALVKEVNGNILAKHQ-GMQL--AGGTTVDGIRLIEEARLEKERLREELDLLDPPTPI 308 (311) T ss_pred eeecCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHhc-CccC--CCceeecHHHHHHHHHHHHHHHHHHHhhcCCCchh Confidence 2223332223344444544 333444443 2111 123333332 1223333344444444332222222 Q ss_pred hcCCCce Q lcl|NC_015569. 371 DWADPVL 377 (381) Q Consensus 371 ~~~~Pp~ 377 (381) . .+ T Consensus 309 l----iG 311 (311) T protein:vir:10 309 L----IG 311 (311) T ss_pred c----cC Confidence 2 11 No 32 >protein:vir:106428 Length: 306 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:1474 # MgeName: Aeh1 # Cross-refs: genbank:acc:NP_944100;genbank:gi:38640144;genbank:GeneID:2658189 Probab=96.17 E-value=6.8e-07 Score=54.41 Aligned_cols=196 Identities=15% Similarity=0.170 Sum_probs=85.4 Q ss_pred CCCCCCC-----CHHHHHHHHHHhc-----------CCceEEEeecHHHHHHHHHHHHHHhhhccccCcccceeEEEEec Q lcl|NC_015569. 1 MSIASPQ-----NRKEFKEYILHKL-----------GKPVLEINVADEQIDLAINDAFQYFHEREHFNGTERVFYRLRVE 64 (381) Q Consensus 1 m~~~~~~-----s~~~lkd~ilrrL-----------GaPvl~inv~d~Qi~d~I~~al~~f~Ey~H~dG~~~~~~~~~~~ 64 (381) +.+--|- +.+++-|-|-|-| -.--+.+.|++||+. +| |. .+ T Consensus 19 RrLGAPii~IeVtd~Qi~DcIdrAlely~EyHydG~~k~y~~~~i~ed~~~----------------~g----~~--d~- 75 (306) T protein:vir:10 19 RRLGAPVIQVEVTEDHIYDSIGRALELYKEYHHDGLNKAYLSVKLNQEQAA----------------TG----YI--DI- 75 (306) T ss_pred HhcCCceEEEecCHHHHHHHHHHHHHHHhhhhccccccceEEEEechhccc----------------CC----eE--ec- Confidence 3322221 2333333333322 234566777887731 12 11 11 Q ss_pred ccccCcceeeeeeecccceeeeccceeeeeccccccccccccccccceeecccc---------------------eecCC Q lcl|NC_015569. 65 QPLLDFFETARLQETAQSAVPQVPGAGAVDQLTLVTPGTNYTPTTDGSETRSNQ---------------------PTAPA 123 (381) Q Consensus 65 ~~d~~~f~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ny---------------------~~~p~ 123 (381) .+-++|+||+|+|+++|++.+|+|+++|+|+++|++++.+.++++++.-.+-| -|.|+ T Consensus 76 -~~~~v~aVtkI~r~~~g~~~tm~Gna~~~~~q~FL~~l~~~~~~~~~~g~~~~g~dL~yy~~~~sy~~~lq~ml~p~pD 154 (306) T protein:vir:10 76 -SAYPVFAITKIIRHKSMMWGGLGGGATLNFFTDFLTTLGGGPQGISYHGPFGALGNIGFFAQFQSYQNMMMDQLDPLPD 154 (306) T ss_pred -CCccceeeeeeeccCcceeeeccccccccchhhhhhhhcccccchhhccchhhhhhhhHHHHHHHHHHHHHHHhccccc Confidence 24479999999999999999999999999999999999999998766532211 12332 Q ss_pred c--ceeEEe-eEEEEecccEEeccceEE--EEEee---------ccccceecceeEEecCCCCcceeEcceeee------ Q lcl|NC_015569. 124 N--SGVTGT-GLTVNWGESRTVSGGLVS--VSIYS---------AGEGYSVGDQVIISGGNNDAVFQVTAVKDQ------ 183 (381) Q Consensus 124 ~--~~v~~v-~~~~~~~~~~~~~~~~f~--~~~~~---------~~~~~~~~~~~~~~~~~~~~eyhydg~~~~------ 183 (381) . ..+++. ....|+-+.-.+ .++ +|+|- +|.|++.|.+-. .+..+.|+--++. T Consensus 155 f~~n~~~~ql~i~~nf~~~D~l---~~e~~~ks~~~v~~~~~~~~g~g~~~~~~~~-----~~~~~~~~np~~~l~~~~~ 226 (306) T protein:vir:10 155 YWLDPVNGVVQLTGNFRENDVI---IMEVHIQNFVELEKSVRGVAGAGIVAGGPTS-----ADNKDKWMNPYSRMPSNVA 226 (306) T ss_pred eeEcCCcceEEEEEeecCCcEE---EEEeecccccccchhhhcccccccccCCccc-----cchhhhhccchhhhccccc Confidence 1 012122 233333322111 122 22221 355655433211 1111222211111 Q ss_pred ------------e--------EEeeecc-ee---ecCCeEEcCCCcee---------EEEE--EEecCccccccCceeee Q lcl|NC_015569. 184 ------------T--------PLYGVEI-VE---QQRNWITLPDDVIG---------VTKV--FKVGSSSNLMTGGVIPA 228 (381) Q Consensus 184 ------------y--------~~~~~~~-~~---~~~nyi~Lpd~V~~---------VtkI--~r~~~ss~~~~gg~a~~ 228 (381) | .+.-+.+ |- .|.+=..||-.|.- -.++ +|....+.-.. T Consensus 227 g~~~~~~~~~~~YNnrWvKdYaTAL~K~~wGq~L~K~qG~qLPGGVTvdG~~i~eeA~~E~e~LreEL~~~~~~------ 300 (306) T protein:vir:10 227 GRARSEFPDQGVYNVRWVKDYATTLTKEVWGEILAKHQGMSLPGGVTVDGTRLVEEARQEKEVLRQELLLLEEP------ 300 (306) T ss_pred cccCCCcccccccchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHhhhccCC------ Confidence 1 1110000 00 13344556654320 0011 11111110000 Q ss_pred hhhhhhhhhh Q lcl|NC_015569. 229 AFFTNPFLNG 238 (381) Q Consensus 229 ~~ft~~~ln~ 238 (381) -+++.| T Consensus 301 ----ppi~mg 306 (306) T protein:vir:10 301 ----LPILMG 306 (306) T ss_pred ----CccccC Confidence 111222 No 33 >protein:vir:1780 Length: 67 # NCBI annotation: tail protein B # Family: family:all:824 # MgeID: mge:38 # MgeName: P60 # Cross-refs: genbank:acc:NP_570346;genbank:gi:18640505;genbank:GeneID:932718 Probab=56.33 E-value=0.13 Score=25.39 Aligned_cols=62 Identities=18% Similarity=0.269 Sum_probs=44.0 Q ss_pred CCCCCCCCHHHHHHHHHHhcC-CceEEEeecHHHH---HHHHHHHHHH-hhhccccCcccceeEEEEeccc Q lcl|NC_015569. 1 MSIASPQNRKEFKEYILHKLG-KPVLEINVADEQI---DLAINDAFQY-FHEREHFNGTERVFYRLRVEQP 66 (381) Q Consensus 1 m~~~~~~s~~~lkd~ilrrLG-aPvl~inv~d~Qi---~d~I~~al~~-f~Ey~H~dG~~~~~~~~~~~~~ 66 (381) |.--...+.-+-++.|||..| +||..++.+.-.+ ....+++-+. -.|=|||| +++ .+++|.| T Consensus 1 ~~~~~~~teLdAVN~~L~aIGesPV~sld~~npdva~a~~iL~~v~~~vqseGW~FN-te~---~~~ltPd 67 (67) T protein:vir:17 1 MAPIKRTSELDALNVKMTNIGQQPIVNINNTNPQVALAKTVLNQVTSDVLTEGWIFN-REL---DYPLTPQ 67 (67) T ss_pred CCCccccchhhHHHHHHHhhCccccccccCCCccHHHHHHHHHHHHHHHhhCCceee-ccC---ceeecCC Confidence 666677788888999999999 6999998765443 3344444332 25668998 444 7788988 Done!