Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phiEt88 | Genbank acc : NC_015295

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 7) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 68

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	9	lcl\|NC_015295.1_cdsid_YP_004327312.1	HHsearch (proba=100.00%)
Portal	5	lcl\|NC_015295.1_cdsid_YP_004327308.1	HHsearch (proba=100.00%)
TermL	4	lcl\|NC_015295.1_cdsid_YP_004327307.1	Blast (e-value=1e-179)
MTP	NOT FOUND
Sheath	15	lcl\|NC_015295.1_cdsid_YP_004327318.1	HHsearch (proba=100.00%)
Ad1	11	lcl\|NC_015295.1_cdsid_YP_004327314.1	HHsearch (proba=100.00%)
Hc1	13	lcl\|NC_015295.1_cdsid_YP_004327316.1	HHsearch (proba=100.00%)
Ne1	12	lcl\|NC_015295.1_cdsid_YP_004327315.1	HHsearch (proba=100.00%)
Tc1	14	lcl\|NC_015295.1_cdsid_YP_004327317.1	HHsearch (proba=99.94%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:79642 protein:vir:107687 protein:vir:103285	TLS T1 JK06	49 % 48 % 40 %
Portal	protein:vir:104338 protein:vir:79647 protein:vir:107662	RTP TLS T1	39 % 38 % 35 %
TermL	protein:vir:107694 protein:vir:79648 protein:vir:104336	T1 TLS RTP	57 % 54 % 46 %
Sheath	protein:vir:95263 protein:vir:5260 protein:vir:80052	Felix 01 Aaphi23 B054	25 % 23 % 21 %
Ad1	protein:vir:107702 protein:vir:104344 protein:vir:79640	T1 RTP TLS	34 % 33 % 30 %
Hc1	protein:vir:95261 protein:vir:5258 protein:vir:99571	Felix 01 Aaphi23 BcepF1	27 % 25 % 17 %
Ne1	protein:vir:96105 protein:vir:5257 protein:vir:99546	F8 Aaphi23 BcepF1	32 % 31 % 30 %
Tc1	protein:vir:80105 protein:vir:5259 protein:vir:78612	B054 Aaphi23 BcepNY3	15 % 16 % 18 %