Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 186 lcl|NC_014595.1_cdsid_YP_003934811.1 HHsearch (proba=100.00%)
Portal 181 lcl|NC_014595.1_cdsid_YP_003934806.1 HHsearch (proba=100.00%)
TermL 178 lcl|NC_014595.1_cdsid_YP_003934803.1 Blast (e-value=0)
MTP 180 lcl|NC_014595.1_cdsid_YP_003934805.1 Blast (e-value=4e-90)
Sheath 179 lcl|NC_014595.1_cdsid_YP_003934804.1 HHsearch (proba=100.00%)
Ad1 NOT FOUND
Hc1 NOT FOUND
Ne1 NOT FOUND
Tc1 NOT FOUND
Ad2 173 lcl|NC_014595.1_cdsid_YP_003934798.1 HHsearch (proba=100.00%)
Hc2 175 lcl|NC_014595.1_cdsid_YP_003934800.1 HHsearch (proba=100.00%)
Tc2 176 lcl|NC_014595.1_cdsid_YP_003934801.1 HHsearch (proba=100.00%)
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:107947
protein:vir:7214
protein:vir:103463
JS98
T4
RB32
98 %
84 %
83 %
Portal protein:vir:108049
protein:vir:103458
protein:vir:7208
JS98
RB32
T4
88 %
75 %
75 %
TermL protein:vir:108053
protein:vir:6893
protein:vir:103455
JS98
RB69
RB32
87 %
84 %
81 %
MTP protein:vir:108048
protein:vir:6895
protein:vir:98264
JS98
RB69
RB43
92 %
74 %
73 %
Sheath protein:vir:108052
protein:vir:103456
protein:vir:7206
JS98
RB32
T4
90 %
72 %
71 %
Ad2 protein:vir:107900
protein:vir:7198
protein:vir:103451
JS98
T4
RB32
89 %
64 %
63 %
Hc2 protein:vir:107937
protein:vir:103452
protein:vir:7199
JS98
RB32
T4
75 %
65 %
65 %
Tc2 protein:vir:107931
protein:vir:6891
protein:vir:81023
JS98
RB69
Phi1
81 %
58 %
57 %