Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phiEf11 | Genbank acc : NC_013696

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 1) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster.

Number of sequences analyzed : 65

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	10	lcl\|NC_013696.1_cdsid_YP_003358800.1	HHsearch (proba=100.00%)
Portal	3	lcl\|NC_013696.1_cdsid_YP_003358793.1	HHsearch (proba=100.00%)
TermL	2	lcl\|NC_013696.1_cdsid_YP_003358792.1	Blast (e-value=2e-38)
MTP	15	lcl\|NC_013696.1_cdsid_YP_003358805.1	Blast (e-value=1e-50)
Sheath	NOT FOUND
Ad1	11	lcl\|NC_013696.1_cdsid_YP_003358801.1	HHsearch (proba=100.00%)
Hc1	12	lcl\|NC_013696.1_cdsid_YP_003358802.1	HHsearch (proba=100.00%)
Ne1	13	lcl\|NC_013696.1_cdsid_YP_003358803.1	HHsearch (proba=100.00%)
Tc1	14	lcl\|NC_013696.1_cdsid_YP_003358804.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:106590 protein:vir:96490 protein:vir:4902	Lj965 2972 Sfi11	50 % 29 % 29 %
Portal	protein:vir:9922 protein:vir:2732 protein:vir:96494	315.6 O1205 2972	41 % 30 % 29 %
TermL	protein:vir:106508 protein:vir:96067 protein:vir:80678	phiAsp2 F8 PA6	24 % 19 % 18 %
MTP	protein:vir:3973 protein:vir:3619 protein:vir:745	ul36 TP901-1 Tuc2009	57 % 57 % 57 %
Ad1	protein:vir:3970 protein:vir:741 protein:vir:3615	ul36 Tuc2009 TP901-1	49 % 48 % 47 %
Hc1	protein:vir:742 protein:vir:3971 protein:vir:3616	Tuc2009 ul36 TP901-1	59 % 58 % 57 %
Ne1	protein:vir:743 protein:vir:98409 protein:vir:3617	Tuc2009 ul36 TP901-1	48 % 44 % 43 %
Tc1	protein:vir:3618 protein:vir:744 protein:vir:3972	TP901-1 Tuc2009 ul36	71 % 70 % 67 %