Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Angel | Genbank acc : NC_012788

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 10) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 61

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	7	lcl\|NC_012788.1_cdsid_YP_002941865.1	HHsearch (proba=100.00%)
Portal	3	lcl\|NC_012788.1_cdsid_YP_002941861.1	HHsearch (proba=100.00%)
TermL	2	lcl\|NC_012788.1_cdsid_YP_002941860.1	Blast (e-value=0)
MTP	13	lcl\|NC_012788.1_cdsid_YP_002941871.1	Blast (e-value=1e-116)
Sheath	NOT FOUND
Ad1	9	lcl\|NC_012788.1_cdsid_YP_002941867.1	HHsearch (proba=100.00%)
Hc1	10	lcl\|NC_012788.1_cdsid_YP_002941868.1	HHsearch (proba=100.00%)
Ne1	11	lcl\|NC_012788.1_cdsid_YP_002941869.1	HHsearch (proba=100.00%)
Tc1	12	lcl\|NC_012788.1_cdsid_YP_002941870.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:99920 protein:vir:8187 protein:vir:80684	Halo Che9d PA6	97 % 45 % 34 %
Portal	protein:vir:99916 protein:vir:8184 protein:vir:80680	Halo Che9d PA6	98 % 51 % 25 %
TermL	protein:vir:99915 protein:vir:2499 protein:vir:8315	Halo TM4 Corndog	100 % 58 % 35 %
MTP	protein:vir:99926 protein:vir:2509 protein:vir:9765	Halo TM4 315.3	99 % 61 % 27 %
Ad1	protein:vir:99922 protein:vir:8189 protein:vir:80668	Halo Che9d PA6	96 % 43 % 43 %
Hc1	protein:vir:99923 protein:vir:2506 protein:vir:8190	Halo TM4 Che9d	98 % 45 % 26 %
Ne1	protein:vir:99924 protein:vir:2507 protein:vir:9763	Halo TM4 315.3	95 % 35 % 26 %
Tc1	protein:vir:99925 protein:vir:2508 protein:vir:98426	Halo TM4 VWB	98 % 40 % 21 %