Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 73 lcl|NC_011421.1_cdsid_YP_002300349.1 HHsearch (proba=100.00%)
Portal 70 lcl|NC_011421.1_cdsid_YP_002300346.1 HHsearch (proba=100.00%)
TermL 54 lcl|NC_011421.1_cdsid_YP_002300330.1 Blast (e-value=5e-99)
MTP 81 lcl|NC_011421.1_cdsid_YP_002300357.1 Blast (e-value=4e-32)
Sheath 80 lcl|NC_011421.1_cdsid_YP_002300356.1 HHsearch (proba=100.00%)
Ad1 75 lcl|NC_011421.1_cdsid_YP_002300351.1 HHsearch (proba=99.31%)
Hc1 48 lcl|NC_011421.1_cdsid_YP_002300324.1 HHsearch (proba=72.71%)
Ne1 NOT FOUND
Tc1 NOT FOUND
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matched obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.





Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:99311
protein:vir:95603
protein:vir:96666
K
G1
Twort
29 %
29 %
28 %
Portal protein:vir:63755
protein:vir:80796
protein:vir:80644
P100
phiEF24C
A511
38 %
37 %
37 %
TermL protein:vir:99333
protein:vir:95547
protein:vir:80755
K
G1
phiEF24C
34 %
34 %
32 %
MTP protein:vir:80620
protein:vir:99300
protein:vir:95739
A511
K
G1
45 %
45 %
45 %
Sheath protein:vir:80488
protein:vir:63742
protein:vir:80779
A511
P100
phiEF24C
30 %
30 %
28 %
Ad1 protein:vir:80320
protein:vir:101652
protein:vir:7857
phi644-2
244
CJW1
11 %
17 %
17 %
Hc1 protein:vir:102607
protein:vir:105824
protein:vir:7992
Llij
PMC
Che8
24 %
24 %
24 %