Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 22 lcl|NC_010392.1_cdsid_YP_001700607.1 HHsearch (proba=100.00%)
Portal 25 lcl|NC_010392.1_cdsid_YP_001700610.1 HHsearch (proba=100.00%)
TermL 27 lcl|NC_010392.1_cdsid_YP_001700612.1 Blast (e-value=0)
MTP NOT FOUND
Sheath NOT FOUND
Ad1 26 lcl|NC_010392.1_cdsid_YP_001700611.1 HHsearch (proba=99.93%)
Hc1 20 lcl|NC_010392.1_cdsid_YP_001700605.1 HHsearch (proba=100.00%)
Ne1 19 lcl|NC_010392.1_cdsid_YP_001700604.1 HHsearch (proba=100.00%)
Tc1 17 lcl|NC_010392.1_cdsid_YP_001700602.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.



Proteins Superfamilies Observed Intergene Distance Expected Intergene Distance
Ad1<->Hc1 6 2
Tc1<->Ad1 9 4
Ne1<->Ad1 7 3


Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:3424
protein:vir:393
protein:vir:6378
lambda
N15
BcepNazgul
61 %
60 %
27 %
Portal protein:vir:389
protein:vir:3420
protein:vir:6382
N15
lambda
BcepNazgul
62 %
60 %
32 %
TermL protein:vir:387
protein:vir:3418
protein:vir:10320
N15
lambda
VHML
65 %
65 %
30 %
Ad1 protein:vir:388
protein:vir:3419
protein:vir:6383
N15
lambda
BcepNazgul
72 %
70 %
34 %
Hc1 protein:vir:395
protein:vir:3426
protein:vir:80382
N15
lambda
BcepGomr
58 %
56 %
15 %
Ne1 protein:vir:79555
protein:vir:396
protein:vir:3427
cdtI
N15
lambda
80 %
55 %
53 %
Tc1 protein:vir:79571
protein:vir:397
protein:vir:3428
cdtI
N15
lambda
68 %
55 %
50 %