Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Gifsy-1 | Genbank acc : NC_010392

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 6) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 58

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	22	lcl\|NC_010392.1_cdsid_YP_001700607.1	HHsearch (proba=100.00%)
Portal	25	lcl\|NC_010392.1_cdsid_YP_001700610.1	HHsearch (proba=100.00%)
TermL	27	lcl\|NC_010392.1_cdsid_YP_001700612.1	Blast (e-value=0)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	26	lcl\|NC_010392.1_cdsid_YP_001700611.1	HHsearch (proba=99.93%)
Hc1	20	lcl\|NC_010392.1_cdsid_YP_001700605.1	HHsearch (proba=100.00%)
Ne1	19	lcl\|NC_010392.1_cdsid_YP_001700604.1	HHsearch (proba=100.00%)
Tc1	17	lcl\|NC_010392.1_cdsid_YP_001700602.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Ad1<->Hc1	6	2
Tc1<->Ad1	9	4
Ne1<->Ad1	7	3

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:3424 protein:vir:393 protein:vir:6378	lambda N15 BcepNazgul	61 % 60 % 27 %
Portal	protein:vir:389 protein:vir:3420 protein:vir:6382	N15 lambda BcepNazgul	62 % 60 % 32 %
TermL	protein:vir:387 protein:vir:3418 protein:vir:10320	N15 lambda VHML	65 % 65 % 30 %
Ad1	protein:vir:388 protein:vir:3419 protein:vir:6383	N15 lambda BcepNazgul	72 % 70 % 34 %
Hc1	protein:vir:395 protein:vir:3426 protein:vir:80382	N15 lambda BcepGomr	58 % 56 % 15 %
Ne1	protein:vir:79555 protein:vir:396 protein:vir:3427	cdtI N15 lambda	80 % 55 % 53 %
Tc1	protein:vir:79571 protein:vir:397 protein:vir:3428	cdtI N15 lambda	68 % 55 % 50 %